BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF1905
(107 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11862909|dbj|BAA95693.2| hypothetical protein [Bacteroid... 131 9e-30
gi|143949|gb|AAA22911.1| putative 124 1e-27
gi|7798614|dbj|BAA95637.1| hypothetical protein [Bacteroide... 121 1e-26
gi|37812496|gb|AAR04098.1| transposase [Bacteroides fragilis] 121 1e-26
gi|7798591|dbj|BAA95632.1| hypothetical protein [Bacteroide... 121 1e-26
gi|112180279|gb|ABI13776.1| Tp614 [Bacteroides fragilis] 120 2e-26
gi|33468437|emb|CAD89785.1| TnpIS [Bacteroides ovatus] 120 2e-26
gi|37812493|gb|AAR04096.1| transposase [Bacteroides fragilis] 120 2e-26
gi|50841412|gb|AAT84070.1| transposase [Bacteroides fragili... 120 2e-26
gi|7798616|dbj|BAA95639.1| hypothetical protein [Bacteroide... 119 5e-26
gi|50841414|gb|AAT84071.1| transposase [Bacteroides fragilis] 119 6e-26
gi|150004163|ref|YP_001298907.1| transposase [Bacteroides v... 114 2e-24
gi|150004161|ref|YP_001298905.1| transposase [Bacteroides v... 81 2e-14
gi|156860441|gb|EDO53872.1| hypothetical protein BACUNI_024... 81 2e-14
gi|440391|emb|CAA54267.1| unnamed protein product [Bacteroi... 70 4e-11
gi|91217365|ref|ZP_01254325.1| transposase [Psychroflexus t... 55 9e-07
gi|91218433|ref|ZP_01255375.1| hypothetical protein P700755... 53 7e-06
>gi|11862909|dbj|BAA95693.2| hypothetical protein [Bacteroides fragilis]
Length = 428
Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/87 (72%), Positives = 71/87 (81%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W+ LPKSFMAEN VFL+LTA+IRNFYK +MQ ++K FGLK TSRIKTFVFKFI+VPAK
Sbjct: 342 WDRLPKSFMAENTVFLLLTALIRNFYKAIMQRIEVKKFGLKETSRIKTFVFKFISVPAKW 401
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
IKTARQ +LNIYT HAYA FK G
Sbjct: 402 IKTARQCVLNIYTDNHAYAEAFKTSSG 428
>gi|143949|gb|AAA22911.1| putative
Length = 430
Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/100 (58%), Positives = 79/100 (79%)
Query: 8 RKSLMPNEHTNICWNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIK 67
++ + + + + WN LPKSFMA+N VFL++TA+IRNFYK +MQ FGL+ TSRIK
Sbjct: 331 KERIFDDMNNDFGWNRLPKSFMAQNTVFLLMTALIRNFYKAIMQRLKTHEFGLRATSRIK 390
Query: 68 TFVFKFITVPAKRIKTARQNMLNIYTSQHAYASIFKFDFG 107
TFVFKFI+VPAK IKT+R+++LNIY+ +AYA++FK DFG
Sbjct: 391 TFVFKFISVPAKWIKTSRRHVLNIYSDNNAYANLFKTDFG 430
>gi|7798614|dbj|BAA95637.1| hypothetical protein [Bacteroides fragilis]
Length = 429
Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/87 (68%), Positives = 68/87 (78%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W+ LPKSFMAEN VFL+LTA+I NFYK +M D KAFGLK TSRIK FVF+FI+VPAK
Sbjct: 343 WSRLPKSFMAENTVFLLLTALIHNFYKTIMSRLDTKAFGLKKTSRIKAFVFRFISVPAKW 402
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I TARQ +LNIYT AYA FK +FG
Sbjct: 403 IMTARQYVLNIYTENRAYAKPFKTEFG 429
>gi|37812496|gb|AAR04098.1| transposase [Bacteroides fragilis]
Length = 428
Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/87 (64%), Positives = 71/87 (81%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W+ LPKSFMAEN VFL+LTA+IRNFYK ++ D+K FGL TSRIK FVF+F++VPAK
Sbjct: 342 WDRLPKSFMAENTVFLLLTALIRNFYKAIIHRLDVKRFGLNATSRIKAFVFRFVSVPAKW 401
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I+T+R+ +LNIYT +AYA IF+ DFG
Sbjct: 402 IRTSRRYVLNIYTCNNAYADIFQTDFG 428
>gi|7798591|dbj|BAA95632.1| hypothetical protein [Bacteroides fragilis]
Length = 428
Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/87 (64%), Positives = 71/87 (81%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W+ LPKSFMAEN VFL+LTA+IRNFYK ++ D+K FGL TSRIK FVF+F++VPAK
Sbjct: 342 WDRLPKSFMAENTVFLLLTALIRNFYKAIIHRLDVKRFGLNATSRIKAFVFRFVSVPAKW 401
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I+T+R+ +LNIYT +AYA IF+ DFG
Sbjct: 402 IRTSRRYVLNIYTCNNAYADIFQTDFG 428
>gi|112180279|gb|ABI13776.1| Tp614 [Bacteroides fragilis]
Length = 429
Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 67/87 (77%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
WN LPKSFM+EN VFL+LTA+I NFYK ++ D KAFGLK TSRIK FVF FI+VPAK
Sbjct: 343 WNRLPKSFMSENTVFLLLTALIHNFYKTIISKLDTKAFGLKETSRIKAFVFSFISVPAKW 402
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I TARQ +LNIYT AYA FK +FG
Sbjct: 403 IMTARQYVLNIYTENRAYARPFKTEFG 429
>gi|33468437|emb|CAD89785.1| TnpIS [Bacteroides ovatus]
Length = 409
Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/87 (63%), Positives = 71/87 (81%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W+ LPKSFMAEN VFL+LTA+IRNFYK+++Q D+K FG TSRIK FVF+F++VPAK
Sbjct: 323 WSRLPKSFMAENTVFLLLTALIRNFYKVIIQRLDVKRFGPNKTSRIKAFVFRFVSVPAKW 382
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I+T+R +LNIYT +AYA +F+ DFG
Sbjct: 383 IRTSRWYVLNIYTCNNAYADVFQTDFG 409
>gi|37812493|gb|AAR04096.1| transposase [Bacteroides fragilis]
Length = 428
Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/87 (64%), Positives = 70/87 (80%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W LPKSFMAEN VFL+LTA+I NFYK +MQ D++ FGLK TSRI+TFVFKFI+VPAK
Sbjct: 342 WKRLPKSFMAENTVFLLLTALIHNFYKAIMQKLDVRKFGLKTTSRIRTFVFKFISVPAKW 401
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I+T+R+ +LNIYT +AYA +F+ G
Sbjct: 402 IRTSRRYLLNIYTGNNAYAELFQTGHG 428
>gi|50841412|gb|AAT84070.1| transposase [Bacteroides fragilis]
gi|112180282|gb|ABI13778.1| Tp614 [Bacteroides fragilis]
gi|112180285|gb|ABI13780.1| Tp614 [Bacteroides fragilis]
Length = 429
Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 67/87 (77%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
WN LPKSFM+EN VFL+LTA+I NFYK ++ D KAFGLK TSRIK FVF FI+VPAK
Sbjct: 343 WNRLPKSFMSENTVFLLLTALIHNFYKTIISKLDTKAFGLKETSRIKAFVFSFISVPAKW 402
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I TARQ +LNIYT AYA FK +FG
Sbjct: 403 IMTARQYVLNIYTENRAYARPFKTEFG 429
>gi|7798616|dbj|BAA95639.1| hypothetical protein [Bacteroides fragilis]
Length = 429
Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 66/87 (75%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
WN LPKSFM+EN VFL+LTA+I NFYK ++ D KAFGLK TSRIK FVF FI+VPAK
Sbjct: 343 WNRLPKSFMSENTVFLLLTALIHNFYKTIISKLDTKAFGLKETSRIKAFVFSFISVPAKW 402
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I TARQ +LNIYT AYA FK FG
Sbjct: 403 IMTARQYVLNIYTENRAYARPFKTGFG 429
>gi|50841414|gb|AAT84071.1| transposase [Bacteroides fragilis]
Length = 429
Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 66/87 (75%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
WN LPKSFM+EN VFL+LTA+I NFYK ++ D KAFGLK TSRIK FVF FI+VPAK
Sbjct: 343 WNRLPKSFMSENTVFLLLTALIHNFYKTIISKLDTKAFGLKETSRIKAFVFSFISVPAKW 402
Query: 81 IKTARQNMLNIYTSQHAYASIFKFDFG 107
I TARQ +LNIYT AYA FK FG
Sbjct: 403 IMTARQYVLNIYTENRAYARPFKTGFG 429
>gi|150004163|ref|YP_001298907.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|154493768|ref|ZP_02033088.1| hypothetical protein PARMER_03110 [Parabacteroides merdae ATCC
43184]
gi|149932587|gb|ABR39285.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|154086518|gb|EDN85563.1| hypothetical protein PARMER_03110 [Parabacteroides merdae ATCC
43184]
gi|156860437|gb|EDO53868.1| hypothetical protein BACUNI_02489 [Bacteroides uniformis ATCC 8492]
Length = 429
Score = 114 bits (284), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/100 (53%), Positives = 75/100 (75%)
Query: 8 RKSLMPNEHTNICWNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIK 67
++ ++ + + W HLPKSFMAENAV+L++TA+IRNFYK +++ ++K FGL +SRIK
Sbjct: 330 KERILDDMNNGFGWKHLPKSFMAENAVYLLMTALIRNFYKTIIRKLNVKDFGLSISSRIK 389
Query: 68 TFVFKFITVPAKRIKTARQNMLNIYTSQHAYASIFKFDFG 107
TFVFK+I+V AK I+T+R +LNIYT AY F+ DFG
Sbjct: 390 TFVFKYISVAAKWIRTSRTYVLNIYTENPAYKIAFQQDFG 429
>gi|150004161|ref|YP_001298905.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|154493771|ref|ZP_02033091.1| hypothetical protein PARMER_03113 [Parabacteroides merdae ATCC
43184]
gi|149932585|gb|ABR39283.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|154086521|gb|EDN85566.1| hypothetical protein PARMER_03113 [Parabacteroides merdae ATCC
43184]
Length = 401
Score = 81.3 bits (199), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 8 RKSLMPNEHTNICWNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIK 67
++ ++ + + W HLPKSFMAENAV+L++TA+IRNFYK +++ ++K FGL +SRIK
Sbjct: 330 KERILDDMNNGFGWKHLPKSFMAENAVYLLMTALIRNFYKTIIRKLNVKDFGLSISSRIK 389
Query: 68 TFVFK 72
TFVFK
Sbjct: 390 TFVFK 394
>gi|156860441|gb|EDO53872.1| hypothetical protein BACUNI_02493 [Bacteroides uniformis ATCC 8492]
Length = 401
Score = 81.3 bits (199), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 8 RKSLMPNEHTNICWNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIK 67
++ ++ + + W HLPKSFMAENAV+L++TA+IRNFYK +++ ++K FGL +SRIK
Sbjct: 330 KERILDDMNNGFGWKHLPKSFMAENAVYLLMTALIRNFYKTIIRKLNVKDFGLSISSRIK 389
Query: 68 TFVFK 72
TFVFK
Sbjct: 390 TFVFK 394
>gi|440391|emb|CAA54267.1| unnamed protein product [Bacteroides thetaiotaomicron]
Length = 213
Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQ---DEDIKAFGLKHTSRIKTFVFKFITVP 77
W LPKSF+AE L+A R +LL + K + TSRIK FVFK+++V
Sbjct: 127 WKRLPKSFLAEK---YGLSADDRTDKELLQNHYPQNECKGIRTQQTSRIKAFVFKYVSVV 183
Query: 78 AKRIKTARQNMLNIYTSQHAYASIFK 103
AK IKT+R +MLNIYT AY ++FK
Sbjct: 184 AKWIKTSRMHMLNIYTGNRAYENVFK 209
>gi|91217365|ref|ZP_01254325.1| transposase [Psychroflexus torquis ATCC 700755]
gi|91184473|gb|EAS70856.1| transposase [Psychroflexus torquis ATCC 700755]
Length = 426
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W +P SF+ +N F+I+TAMI+NFY + + T+RIK FVF+FI V K
Sbjct: 345 WKRMPFSFLNQNNTFMIVTAMIKNFYTYFVGLVSKVFDNISPTTRIKRFVFRFINVAGKW 404
Query: 81 IKTARQNMLNIYT 93
+ +R +L +Y+
Sbjct: 405 VHQSRGWVLKLYS 417
>gi|91218433|ref|ZP_01255375.1| hypothetical protein P700755_07382 [Psychroflexus torquis ATCC
700755]
gi|91183424|gb|EAS69825.1| hypothetical protein P700755_07382 [Psychroflexus torquis ATCC
700755]
Length = 292
Score = 52.8 bits (125), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 21 WNHLPKSFMAENAVFLILTAMIRNFYKLLMQDEDIKAFGLKHTSRIKTFVFKFITVPAKR 80
W +P SF+ +N F+I+TA+I+NFY + + T+R+K FVF+FI V K
Sbjct: 211 WKRMPFSFLNQNNTFMIITALIKNFYTYFVVLVSKVFENIAPTTRLKRFVFRFINVAGKW 270
Query: 81 IKTARQNMLNIYT 93
+ R +L +Y+
Sbjct: 271 VYQGRNWVLKLYS 283
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.329 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,665,114
Number of Sequences: 5470121
Number of extensions: 10164934
Number of successful extensions: 25645
Number of sequences better than 1.0e-05: 17
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25627
Number of HSP's gapped (non-prelim): 17
length of query: 107
length of database: 1,894,087,724
effective HSP length: 75
effective length of query: 32
effective length of database: 1,483,828,649
effective search space: 47482516768
effective search space used: 47482516768
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 124 (52.4 bits)