R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 128 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7440636|pir||T04582 ribosomal protein L8, cytosolic - Arabidopsis thaliana
>gi|2961372|emb|CAA18119.1| (AL022141) putative ribosomal protein
L8 [Arabidopsis thaliana] >gi|3036817|emb|CAA18507.1| (AL022373)
ribosomal protein L2 [Arabidopsis thaliana]
>gi|7270565|emb|CAB81522.1| (AL161588) putative ribosomal protein
L8 [Arabidopsis thaliana]
Length = 258
Frame 3 hits (HSPs): ______________________ _______
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
Plus Strand HSPs:
Score = 479 (168.6 bits), Expect = 7.3e-66, Sum P(3) = 7.3e-66
Identities = 92/109 (84%), Positives = 96/109 (88%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVI+HNPDND
Sbjct: 85 GQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDND 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR 329
TSRIKLPSGS IVPS C AMI VAGGG T +LKAGNAYH +RV R
Sbjct: 145 TSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKR 193
Score = 123 (43.3 bits), Expect = 7.3e-66, Sum P(3) = 7.3e-66
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 194 NCWPKVRGVAMNPVEHPHGG 213
Score = 108 (38.0 bits), Expect = 7.3e-66, Sum P(3) = 7.3e-66
Identities = 22/29 (75%), Positives = 26/29 (89%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
DAPPG+KVGLIAAR TGRL+ QAAA A++
Sbjct: 228 DAPPGKKVGLIAARRTGRLRGQAAALASK 256
Score = 64 (22.5 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 13/18 (72%), Positives = 13/18 (72%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QHIGHASTVRR
Sbjct: 210 PHGGGNHQHIGHASTVRR 227
>gi|266944|sp|P29766|RL2_LYCES 60S RIBOSOMAL PROTEIN L2 (L8) (RIBOSOMAL PROTEIN
TL2) >gi|71078|pir||R5TOL8 ribosomal protein L8, cytosolic - tomato
>gi|19343|emb|CAA45863.1| (X64562) ribosomal protein L2
[Lycopersicon esculentum]
Length = 260
Frame 3 hits (HSPs): _____________________ _______
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 13..257
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..84
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 88..210
PRODOM PD086576: RL2(9) RL8(3) 212..242
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 197..208
__________________
Plus Strand HSPs:
Score = 452 (159.1 bits), Expect = 7.2e-64, Sum P(3) = 7.2e-64
Identities = 85/109 (77%), Positives = 93/109 (85%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKATL+VGNVLPLRSIPEGAV+CNVEH VGDRGVFAR SGDYAIVISHNPDN
Sbjct: 85 GQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNG 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR 329
T+R+KLPSG+ IVPS C AMI VAGGG T +LKAGNAYH +RV R
Sbjct: 145 TTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKR 193
Score = 123 (43.3 bits), Expect = 7.2e-64, Sum P(3) = 7.2e-64
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 194 NCWPKVRGVAMNPVEHPHGG 213
Score = 116 (40.8 bits), Expect = 7.2e-64, Sum P(3) = 7.2e-64
Identities = 24/29 (82%), Positives = 26/29 (89%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
DAPPGQKVGLIAAR TGRL+ QA ATAA+
Sbjct: 228 DAPPGQKVGLIAARRTGRLRGQARATAAK 256
Score = 64 (22.5 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 13/18 (72%), Positives = 13/18 (72%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QHIGHASTVRR
Sbjct: 210 PHGGGNHQHIGHASTVRR 227
>gi|9230281|gb|AAF85800.1| (AF156372) 60S ribosomal protein L2 [Nicotiana
tabacum]
Length = 174
Frame 3 hits (HSPs): ______________________________ _________
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 174
0 50 100 150
Plus Strand HSPs:
Score = 426 (150.0 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 83/103 (80%), Positives = 88/103 (85%), Frame = +3
Query: 21 GKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKL 200
GKKATL+VGNVLPLRSIPEGAV+CNVEH VGDRGVFAR SGDYAIVISHNPDN T+RIKL
Sbjct: 5 GKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRIKL 64
Query: 201 PSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR 329
PSGS IVPS C AMI VAGGG T +LKAGNAYH +RV R
Sbjct: 65 PSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKR 107
Score = 123 (43.3 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 108 NCWPKVRGVAMNPVEHPHGG 127
Score = 121 (42.6 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 25/29 (86%), Positives = 27/29 (93%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
DAPPGQKVGLIAAR TGRL+ QAAATAA+
Sbjct: 142 DAPPGQKVGLIAARRTGRLRGQAAATAAK 170
Score = 64 (22.5 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 13/18 (72%), Positives = 13/18 (72%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QHIGHASTVRR
Sbjct: 124 PHGGGNHQHIGHASTVRR 141
>gi|12054507|emb|CAC20221.1| (AJ404848) ribosomal protein L2 [Glycine max]
Length = 260
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 583 (205.2 bits), Expect = 1.2e-55, P = 1.2e-55
Identities = 124/173 (71%), Positives = 128/173 (73%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G FIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND
Sbjct: 85 GQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
TSRIKLPSGS IVPSDC AMI VAGGG T LLKAGNAYH FRV R +
Sbjct: 145 TSRIKLPSGSKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
P P + DAPPGQKVGLIAAR TGRL+ QAAATAA+
Sbjct: 205 NPV-EHPHGGGNHQHIGHASTVSRDAPPGQKVGLIAARRTGRLRGQAAATAAK 256
Score = 123 (43.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 194 NCWPKVRGVAMNPVEHPHGG 213
>gi|11276681|pir||T45750 ribosomal protein L8 homolog - Arabidopsis thaliana
>gi|6562271|emb|CAB62641.1| (AL132980) ribosomal protein L8 homolog
[Arabidopsis thaliana]
Length = 260
Frame 3 hits (HSPs): ______________________ ______
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 77/109 (70%), Positives = 89/109 (81%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G ++YCGKKA L+VGNVLPL SIPEGAVICNVE HVGDRG ARASGDYAIVI+HNP+++
Sbjct: 86 GQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESN 145
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR 329
T+R+KLPSGS I+PS C AMI VAGGG T LKAGNAYH ++ R
Sbjct: 146 TTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKR 194
Score = 116 (40.8 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 19/20 (95%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP VRGVAMNPVEHPHGG
Sbjct: 195 NCWPVVRGVAMNPVEHPHGG 214
Score = 69 (24.3 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 18/28 (64%), Positives = 19/28 (67%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGRLKRQAAATAA 518
D G KVG IAAR TGR +R AAAT A
Sbjct: 229 DKSAGAKVGQIAARRTGR-RRGAAATLA 255
Score = 64 (22.5 bits), Expect = 2.7e-48, Sum P(3) = 2.7e-48
Identities = 13/18 (72%), Positives = 13/18 (72%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QHIGHASTVRR
Sbjct: 211 PHGGGNHQHIGHASTVRR 228
>gi|4406816|gb|AAD20124.1| (AC006201) 60S ribosomal protein L2 [Arabidopsis
thaliana]
Length = 258
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
Plus Strand HSPs:
Score = 544 (191.5 bits), Expect = 1.7e-51, P = 1.7e-51
Identities = 114/173 (65%), Positives = 126/173 (72%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKATLVVGNVLPLRSIPEGAV+CNVEHHVGDRGV ARASGDYAIVI+HNPD+D
Sbjct: 85 GQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSD 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
T+RIKLPSGS IVPS C AMI VAGGG T +LKAGNAYH +RV R +
Sbjct: 145 TTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
P P + DAPPGQKVGLIAAR TGRL+ QAAA+AA+
Sbjct: 205 NPV-EHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAASAAK 256
Score = 113 (39.8 bits), Expect = 0.00069, P = 0.00069
Identities = 19/20 (95%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WPKVRGVAMNPVEHPHGG
Sbjct: 194 NSWPKVRGVAMNPVEHPHGG 213
>gi|132849|sp|P25998|RL2_TOBAC 60S RIBOSOMAL PROTEIN L2 >gi|7440614|pir||S22641
ribosomal protein L2, cytosolic - common tobacco
>gi|20001|emb|CAA44362.1| (X62500) 60S ribosomal protein L2
[Nicotiana tabacum]
Length = 260
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): ____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 13..257
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..84
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 88..210
PRODOM PD086576: RL2(9) RL8(3) 212..242
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 197..208
__________________
Plus Strand HSPs:
Score = 526 (185.2 bits), Expect = 1.4e-49, P = 1.4e-49
Identities = 111/173 (64%), Positives = 121/173 (69%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKATL+VGNVLPLRSIPEGAV+CNVEH VGDRGVFAR SG YAIVISHNPDN
Sbjct: 85 GQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNG 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
T+RIKLPSGS IVPS C MI VAGGG T +LKAGNAYH +RV R +
Sbjct: 145 TTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
P P + DAPPGQKVGLIA R TGRL+ QAAATAA+
Sbjct: 205 NPV-EHPHGGGNHQHIGHASTVARDAPPGQKVGLIAGRRTGRLRGQAAATAAK 256
Score = 123 (43.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 194 NCWPKVRGVAMNPVEHPHGG 213
>gi|1173018|sp|P46286|RL2_ARATH 60S RIBOSOMAL PROTEIN L2
>gi|1076399|pir||S54250 ribosomal protein L2 - Arabidopsis thaliana
>gi|798818|emb|CAA60445.1| (X86765) 60S ribosomal protein L2
[Arabidopsis thaliana]
Length = 258
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 7..241
PFAM Ribosomal_L2: Ribosomal Proteins L2 13..257
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..79
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 88..210
PRODOM PD086576: RL2(9) RL8(3) 212..242
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 197..208
__________________
Plus Strand HSPs:
Score = 516 (181.6 bits), Expect = 1.6e-48, P = 1.6e-48
Identities = 110/170 (64%), Positives = 122/170 (71%), Frame = +3
Query: 12 IYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSR 191
+YCGKKATLVVGNVLPLRSIPEGAV+CNVEHHVGDRGV ARASGDYAIVI+ NPD+DT+R
Sbjct: 88 LYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAENPDSDTTR 147
Query: 192 IKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCYEPC 371
IKLPSGS IVPS AMI VAGGG T +LKAGNAYH +RV R + P
Sbjct: 148 IKLPSGSKKIVPSGSRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPV 207
Query: 372 *ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAAATAAQ 521
P + DAPPGQKVGLIAAR TGRL+ QAAA+AA+
Sbjct: 208 -EHPHGGGNHQHIGHSSTVRRDAPPGQKVGLIAARRTGRLRGQAAASAAK 256
Score = 113 (39.8 bits), Expect = 0.00069, P = 0.00069
Identities = 19/20 (95%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WPKVRGVAMNPVEHPHGG
Sbjct: 194 NSWPKVRGVAMNPVEHPHGG 213
>gi|133094|sp|P08093|RLK7_SCHPO 60S RIBOSOMAL PROTEIN K37 >gi|82821|pir||S07377
ribosomal protein K37 - fission yeast (Schizosaccharomyces pombe)
>gi|5061|emb|CAA28710.1| (X05036) ribosomal protein K37 (AA 1 -
239) [Schizosaccharomyces pombe]
Length = 239
Frame 3 hits (HSPs): ______________________
Frame 2 hits (HSPs): ___
Frame 1 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 6..222
PFAM Ribosomal_L2: Ribosomal Proteins L2 12..238
PRODOM PD086587: RLK7_SCHPO 1..86
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 88..207
PRODOM PD086577: RLK7_SCHPO 209..238
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 196..207
__________________
Plus Strand HSPs:
Score = 298 (104.9 bits), Expect = 7.2e-38, Sum P(3) = 7.2e-38
Identities = 54/105 (51%), Positives = 70/105 (66%), Frame = +3
Query: 15 YCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRI 194
YCGK A L VGNVLP+ +PEG +I NVE GDRG R+SG+Y I++ H+ D +R+
Sbjct: 88 YCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRV 147
Query: 195 KLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR 329
KLPSG+ +VPS ++ VAGGG LLKAG A+H +RV R
Sbjct: 148 KLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKR 192
Score = 86 (30.3 bits), Expect = 7.2e-38, Sum P(3) = 7.2e-38
Identities = 13/16 (81%), Positives = 15/16 (93%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEH 378
NCWP+ RGVAMNPV+H
Sbjct: 193 NCWPRTRGVAMNPVDH 208
Score = 58 (20.4 bits), Expect = 7.2e-38, Sum P(3) = 7.2e-38
Identities = 7/10 (70%), Positives = 10/10 (100%), Frame = +2
Query: 443 SWTEGWSHCC 472
SW++GWS+CC
Sbjct: 229 SWSKGWSYCC 238
>gi|12580698|emb|CAC27016.1| (AJ010592) 60S ribosomal protein L8 [Guillardia
theta]
Length = 254
Frame 3 hits (HSPs): _____________________ _____
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | || 254
0 50 100 150 200 250
Plus Strand HSPs:
Score = 249 (87.7 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 50/102 (49%), Positives = 68/102 (66%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I+CGKKA L +GNVLPL+S+PEG V CN+E+ GD G + SG+Y VI+H +
Sbjct: 85 GQNIFCGKKAELSIGNVLPLKSLPEGCVCCNLENRPGDGGKLGKTSGNYITVINHVSIHK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAY 308
T R++LPSG I+ S+ A+I VAGG +LKAGN++
Sbjct: 145 T-RVRLPSGIKKIISSNSRAIIGLVAGGNRVDKPMLKAGNSF 185
Score = 101 (35.6 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 17/20 (85%), Positives = 18/20 (90%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WP VRGVAMNPV+HPHGG
Sbjct: 193 NNWPVVRGVAMNPVDHPHGG 212
Score = 84 (29.6 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 16/20 (80%), Positives = 18/20 (90%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGRLK 494
DAPPG+KVGLI AR TGRL+
Sbjct: 227 DAPPGKKVGLIGARRTGRLR 246
Score = 52 (18.3 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 9/18 (50%), Positives = 12/18 (66%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QHIGH ST+++
Sbjct: 209 PHGGGNHQHIGHPSTIKK 226
>gi|6440928|dbj|BAA78597.1| (AU066544) 60S ribosomal protein L2 [Chlamydomonas
sp. HS-5]
Length = 257
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 78/164 (47%), Positives = 101/164 (61%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKATL VGNV P+ ++PEG V+C +E GDRG ARASGDY I+++HN D +
Sbjct: 85 GQFLYCGKKATLHVGNVKPIGTMPEGTVVCCLEEKAGDRGAIARASGDYCIIVAHNTDAN 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ I+PS C A + VAGGG T +LKAG +YH ++ R +
Sbjct: 145 VTRVKLPSGAKKILPSTCRATVGQVAGGGRTEKPMLKAGRSYHKYKAKRNSWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P I +S + A PGQKVGLI AR TGRL+
Sbjct: 205 NPVEHPHGGGNHQHIGHASTVSKM-AAPGQKVGLIGARRTGRLR 247
Score = 113 (39.8 bits), Expect = 0.00068, P = 0.00068
Identities = 19/20 (95%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WPKVRGVAMNPVEHPHGG
Sbjct: 194 NSWPKVRGVAMNPVEHPHGG 213
>gi|5690416|gb|AAD47076.1|AF164152_1 (AF164152) ribosomal protein L8 [Anopheles
gambiae]
Length = 261
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 366 (128.8 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 75/164 (45%), Positives = 102/164 (62%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCG++A L +GNV+P+ +PEG ++CN+E GDRG AR SG+YA VI+HNPD
Sbjct: 85 GQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ ++PS AM+ VAGGG +LKAG AYH ++V R +
Sbjct: 145 RTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSIL--VTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + + V G PPG+KVGLIAAR TGR++
Sbjct: 205 NPV-EHPHGGGNHQHIGKASTVKRGT--PPGRKVGLIAARRTGRIR 247
Score = 123 (43.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 194 NCWPKVRGVAMNPVEHPHGG 213
>gi|6318302|gb|AAF06828.1|AF098520_1 (AF098520) ribosomal protein L8
[Drosophila melanogaster] >gi|7292250|gb|AAF47659.1| (AE003475)
RpL8 gene product [alt 1] [Drosophila melanogaster]
>gi|7292251|gb|AAF47660.1| (AE003475) RpL8 gene product [alt 2]
[Drosophila melanogaster]
Length = 256
Frame 3 hits (HSPs): _________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 365 (128.5 bits), Expect = 1.6e-32, P = 1.6e-32
Identities = 78/164 (47%), Positives = 101/164 (61%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCG+KATL +GNV+PL +PEG +ICN+E GDRG AR SG+YA VI+HN D
Sbjct: 85 GQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ +VPS AM+ VAGGG +LKAG AYH ++V R +
Sbjct: 145 KTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSIL--VTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + + V G A G+KVGLIAAR TGR++
Sbjct: 205 NPV-EHPHGGGNHQHIGKASTVKRGTSA--GRKVGLIAARRTGRIR 247
Score = 113 (39.8 bits), Expect = 0.00067, P = 0.00067
Identities = 19/20 (95%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WPKVRGVAMNPVEHPHGG
Sbjct: 194 NSWPKVRGVAMNPVEHPHGG 213
>gi|1173066|sp|P41569|RL8_AEDAL 60S RIBOSOMAL PROTEIN L8
>gi|293233|gb|AAA29353.1| (M99055) ribosomal protein L8 [Aedes
albopictus]
Length = 261
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 7..241
PFAM Ribosomal_L2: Ribosomal Proteins L2 13..257
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..84
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 88..210
PRODOM PD086576: RL2(9) RL8(3) 212..242
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 197..208
__________________
Plus Strand HSPs:
Score = 363 (127.8 bits), Expect = 2.5e-32, P = 2.5e-32
Identities = 76/164 (46%), Positives = 101/164 (61%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGK+A L +GNVLP+ +PEG ++CN+E GDRG AR SG+YA VI+HNPD
Sbjct: 85 GQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ ++PS AM+ VAGGG +LKAG AY ++V R +
Sbjct: 145 RTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAM 204
Query: 363 EPC*ASPRRXVIXSIL--VTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + + V G PPG+KVGLIAAR TGR++
Sbjct: 205 NPV-EHPHGGGNHQHIGKASTVKRGT--PPGRKVGLIAARRTGRIR 247
Score = 123 (43.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWPKVRGVAMNPVEHPHGG
Sbjct: 194 NCWPKVRGVAMNPVEHPHGG 213
>gi|730576|sp|P41116|RL8_XENLA 60S RIBOSOMAL PROTEIN L8 >gi|630969|pir||S42725
ribosomal protein L8, cytosolic - African clawed frog
>gi|392925|gb|AAA18911.1| (U00920) ribosomal protein L8 [Xenopus
laevis]
Length = 257
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 7..241
PFAM Ribosomal_L2: Ribosomal Proteins L2 13..257
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..84
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 88..209
PRODOM PD086576: RL2(9) RL8(3) 211..242
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 197..208
__________________
Plus Strand HSPs:
Score = 361 (127.1 bits), Expect = 4.1e-32, P = 4.1e-32
Identities = 77/164 (46%), Positives = 99/164 (60%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKA L +GNVLP+ ++PEG ++C VE GDRG ARASG+YA VISHNP+
Sbjct: 85 GQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSGS ++ S A++ VAGGG +LKAG AYH ++ R +
Sbjct: 145 KTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + DAP G+KVGLIAAR TGRL+
Sbjct: 205 NPV-EHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLR 247
Score = 111 (39.1 bits), Expect = 0.0013, P = 0.0013
Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+VRGVAMNPVEHP GG
Sbjct: 194 NCWPRVRGVAMNPVEHPFGG 213
>gi|4506663 ref|NP_000964.1| ribosomal protein L8 [Homo sapiens] >gi|6755358
ref|NP_036183.1| ribosomal protein L8 [Mus musculus] >gi|11424356
ref|XP_005130.1| ribosomal protein L8 [Homo sapiens]
>gi|133027|sp|P25120|RL8_HUMAN 60S RIBOSOMAL PROTEIN L8
>gi|71075|pir||R5RTL8 ribosomal protein L8, cytosolic [validated] -
rat >gi|478326|pir||JN0923 ribosomal protein L8, cytosolic - human
>gi|57704|emb|CAA44071.1| (X62145) ribosomal protein L8 [Rattus
rattus] >gi|433899|emb|CAA82248.1| (Z28407) ribosomal protein L8
[Homo sapiens] >gi|1527178|gb|AAC35587.1| (U67771) ribosomal
protein L8 [Mus musculus] >gi|12652659|gb|AAH00077.1|AAH00077
(BC000077) ribosomal protein L8 [Homo sapiens]
Length = 257
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Plus Strand HSPs:
Score = 358 (126.0 bits), Expect = 8.6e-32, P = 8.6e-32
Identities = 76/164 (46%), Positives = 99/164 (60%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKA L +GNVLP+ ++PEG ++C +E GDRG ARASG+YA VISHNP+
Sbjct: 85 GQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSGS ++ S A++ VAGGG +LKAG AYH ++ R +
Sbjct: 145 KTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + DAP G+KVGLIAAR TGRL+
Sbjct: 205 NPV-EHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLR 247
Score = 111 (39.1 bits), Expect = 0.0013, P = 0.0013
Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+VRGVAMNPVEHP GG
Sbjct: 194 NCWPRVRGVAMNPVEHPFGG 213
>gi|12652605|gb|AAH00047.1|AAH00047 (BC000047) Similar to ribosomal protein L8
[Homo sapiens]
Length = 214
Frame 3 hits (HSPs): _______________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 358 (126.0 bits), Expect = 8.6e-32, P = 8.6e-32
Identities = 76/164 (46%), Positives = 99/164 (60%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKA L +GNVLP+ ++PEG ++C +E GDRG ARASG+YA VISHNP+
Sbjct: 42 GQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETK 101
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSGS ++ S A++ VAGGG +LKAG AYH ++ R +
Sbjct: 102 KTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAM 161
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + DAP G+KVGLIAAR TGRL+
Sbjct: 162 NPV-EHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLR 204
Score = 111 (39.1 bits), Expect = 0.00075, P = 0.00075
Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+VRGVAMNPVEHP GG
Sbjct: 151 NCWPRVRGVAMNPVEHPFGG 170
>gi|7494780|pir||T18676 hypothetical protein B0250.1 - Caenorhabditis elegans
>gi|3873718|emb|CAB03792.1| (Z81453) predicted using
Genefinder~contains similarity to Pfam domain: PF00181 (Ribosomal
Proteins L2), Score=441.6, E-value=2.3e-129, N=1~cDNA EST
EMBL:T01082 comes from this gene; cDNA EST EMBL:T01701 comes from
this gene~cDNA EST yk633d8.3 comes fr>
Length = 260
Frame 3 hits (HSPs): ________________________________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 358 (126.0 bits), Expect = 8.6e-32, P = 8.6e-32
Identities = 77/164 (46%), Positives = 100/164 (60%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G FI+CG KA + +GN++P+ ++PEG ICNVE+ GDRGV ARASG+YA VI+HNPD
Sbjct: 85 GQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTK 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+RI+LPSG+ +V S AMI VAGGG T LLKAG +YH ++ R +
Sbjct: 145 KTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P P + DA G+KVGLIAAR TGR++
Sbjct: 205 NPV-EHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIR 247
Score = 110 (38.7 bits), Expect = 0.0017, P = 0.0017
Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WP+VRGVAMNPVEHPHGG
Sbjct: 194 NSWPRVRGVAMNPVEHPHGG 213
>gi|6321145 ref|NP_011223.1| Ribosomal protein L2A (L5A) (rp8) (YL6); Rpl2ap
[Saccharomyces cerevisiae] >gi|6322171 ref|NP_012246.1| Ribosomal
protein L2B (L5B) (rp8) (YL6); Rpl2bp [Saccharomyces cerevisiae]
>gi|730569|sp|P05736|RL6_YEAST 60S RIBOSOMAL PROTEIN L2 (YL6) (L5)
(RP8) >gi|1071982|pir||S50243 ribosomal protein L8.e, cytosolic -
yeast (Saccharomyces cerevisiae) >gi|596084|gb|AAA92283.1| (U17359)
ribosomal protein YL6 (L5) [Saccharomyces cerevisiae]
>gi|599981|emb|CAA86974.1| (Z46881) putative 60S ribosomal protein
[Saccharomyces cerevisiae]
Length = 254
Frame 3 hits (HSPs): _________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | || 254
0 50 100 150 200 250
Plus Strand HSPs:
Score = 352 (123.9 bits), Expect = 3.7e-31, P = 3.7e-31
Identities = 76/164 (46%), Positives = 97/164 (59%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G FIY GKKA+L VGNVLPL S+PEG ++ NVE GDRG ARASG+Y I+I HNPD +
Sbjct: 85 GQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDEN 144
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R++LPSG+ ++ SD +I +AGGG LLKAG A+H +R+ R +
Sbjct: 145 KTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAM 204
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P I +S A GQK GLIAAR TG L+
Sbjct: 205 NPVDHPHGGGNHQHIGKASTISR-GAVSGQKAGLIAARRTGLLR 247
Score = 106 (37.3 bits), Expect = 0.0054, P = 0.0054
Identities = 17/20 (85%), Positives = 18/20 (90%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WPK RGVAMNPV+HPHGG
Sbjct: 194 NSWPKTRGVAMNPVDHPHGG 213
>gi|596086|gb|AAA92284.1| (U17360) ribosomal protein YL6b (L5) [Saccharomyces
cerevisiae]
Length = 188
Frame 3 hits (HSPs): ____________________________________________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 188
0 50 100 150
Plus Strand HSPs:
Score = 352 (123.9 bits), Expect = 3.7e-31, P = 3.7e-31
Identities = 76/164 (46%), Positives = 97/164 (59%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G FIY GKKA+L VGNVLPL S+PEG ++ NVE GDRG ARASG+Y I+I HNPD +
Sbjct: 19 GQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDEN 78
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R++LPSG+ ++ SD +I +AGGG LLKAG A+H +R+ R +
Sbjct: 79 KTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAM 138
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLK 494
P I +S A GQK GLIAAR TG L+
Sbjct: 139 NPVDHPHGGGNHQHIGKASTISR-GAVSGQKAGLIAARRTGLLR 181
Score = 106 (37.3 bits), Expect = 0.0022, P = 0.0022
Identities = 17/20 (85%), Positives = 18/20 (90%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
N WPK RGVAMNPV+HPHGG
Sbjct: 128 NSWPKTRGVAMNPVDHPHGG 147
>gi|483160|pir||C48328 ribosomal protein K37 - fission yeast
(Schizosaccharomyces pombe)
Length = 253
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
__________________
Annotated Domains:
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 196..207
__________________
Plus Strand HSPs:
Score = 351 (123.6 bits), Expect = 4.7e-31, P = 4.7e-31
Identities = 74/168 (44%), Positives = 95/168 (56%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGK A L VGNVLP+ +PEG +I NVE GDRG R+SG+Y I++ H+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTG 143
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ +VPS ++ VAGGG LLKAG A+H +RV R +
Sbjct: 144 KTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDNPLLKAGRAFHKYRVKRNCWPRTRGVAM 203
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAA 506
P P + + PGQKVGLIAAR TG L+ AA
Sbjct: 204 NPV-DHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAA 250
Score = 113 (39.8 bits), Expect = 0.00065, P = 0.00065
Identities = 17/20 (85%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+ RGVAMNPV+HPHGG
Sbjct: 193 NCWPRTRGVAMNPVDHPHGG 212
>gi|1350784|sp|P36593|RLK5_SCHPO 60S RIBOSOMAL PROTEIN K5
>gi|2130479|pir||S62587 ribosomal protein L2 RPK5 - fission yeast
(Schizosaccharomyces pombe) >gi|7490000|pir||T40711 60s ribosomal
protein - fission yeast (Schizosaccharomyces pombe)
>gi|7490005|pir||T38134 60s ribosomal protein K5 - fission yeast
(Schizosaccharomyces pombe) >gi|7490049|pir||T40134 60s ribosomal
protein L8 or L2 - fission yeast (Schizosaccharomyces pombe)
>gi|1067218|emb|CAA91962.1| (Z67999) 60s ribosomal protein K5
[Schizosaccharomyces pombe] >gi|2239237|emb|CAB10155.1| (Z97211)
60s ribosomal protein L8 or L2 [Schizosaccharomyces pombe]
>gi|2879866|emb|CAA17007.1| (AL021816) 60s ribosomal protein
[Schizosaccharomyces pombe] >gi|5441467|emb|CAB46697.1| (AL096796)
60s ribosomal protein L8 [Schizosaccharomyces pombe]
Length = 253
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
__________________
Annotated Domains:
BLOCKS BL00467A: Ribosomal protein L2 proteins. 28..73
BLOCKS BL00467B: Ribosomal protein L2 proteins. 98..130
BLOCKS BL00467C: Ribosomal protein L2 proteins. 141..186
BLOCKS BL00467D: Ribosomal protein L2 proteins. 196..213
BLOCKS BL00467E: Ribosomal protein L2 proteins. 228..242
PFAM Ribosomal_L2: Ribosomal Proteins L2 12..253
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 15..83
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 87..209
PRODOM PD086576: RL2(9) RL8(3) 211..241
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 196..207
__________________
Plus Strand HSPs:
Score = 351 (123.6 bits), Expect = 4.7e-31, P = 4.7e-31
Identities = 74/168 (44%), Positives = 95/168 (56%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGK A L VGNVLP+ +PEG +I NVE GDRG R+SG+Y I++ H+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTG 143
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ +VPS ++ VAGGG LLKAG A+H +RV R +
Sbjct: 144 KTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAM 203
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAA 506
P P + + PGQKVGLIAAR TG L+ AA
Sbjct: 204 NPV-DHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAA 250
Score = 113 (39.8 bits), Expect = 0.00065, P = 0.00065
Identities = 17/20 (85%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+ RGVAMNPV+HPHGG
Sbjct: 193 NCWPRTRGVAMNPVDHPHGG 212
>gi|482539|pir||A48328 ribosomal protein K5 - fission yeast
(Schizosaccharomyces pombe) >gi|666109|emb|CAA35971.1| (X51659) 60S
ribosomal protein K5 [Schizosaccharomyces pombe]
Length = 253
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
__________________
Annotated Domains:
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 196..207
__________________
Plus Strand HSPs:
Score = 346 (121.8 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 74/168 (44%), Positives = 94/168 (55%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGK A L VGNVLP+ +PEG +I NVE GDRG R+SG+Y I + H+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVISVGHDVDTG 143
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ +VPS ++ VAGGG LLKAG A+H +RV R +
Sbjct: 144 KTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAM 203
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAA 506
P P + + PGQKVGLIAAR TG L+ AA
Sbjct: 204 NPV-DHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAA 250
Score = 113 (39.8 bits), Expect = 0.00065, P = 0.00065
Identities = 17/20 (85%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+ RGVAMNPV+HPHGG
Sbjct: 193 NCWPRTRGVAMNPVDHPHGG 212
>gi|133092|sp|P14067|RLD4_SCHPO 60S RIBOSOMAL PROTEIN KD4 >gi|71077|pir||R5ZPD4
ribosomal protein L8.e, cytosolic (clone KD4) - fission yeast
(Schizosaccharomyces pombe) >gi|5063|emb|CAA34428.1| (X16392)
ribosomal protein KD4 (AA 1-253) [Schizosaccharomyces pombe]
Length = 253
Frame 3 hits (HSPs): __________________________________
Frame 1 hits (HSPs): _____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
__________________
Annotated Domains:
BLOCKS BL00467A: Ribosomal protein L2 proteins. 28..73
BLOCKS BL00467B: Ribosomal protein L2 proteins. 98..130
BLOCKS BL00467C: Ribosomal protein L2 proteins. 141..186
BLOCKS BL00467D: Ribosomal protein L2 proteins. 196..213
BLOCKS BL00467E: Ribosomal protein L2 proteins. 228..242
PFAM Ribosomal_L2: Ribosomal Proteins L2 12..253
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 15..83
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 87..209
PRODOM PD086576: RL2(9) RL8(3) 211..241
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 196..207
__________________
Plus Strand HSPs:
Score = 341 (120.0 bits), Expect = 5.4e-30, P = 5.4e-30
Identities = 73/168 (43%), Positives = 94/168 (55%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGK A L VGNVLP+ +PEG +I NVE GDRG R+SG+Y I++ H+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTG 143
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
+R+KLPSG+ +V S ++ VAGGG LLKAG A+H +RV R +
Sbjct: 144 KTRVKLPSGAKKVVLSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAM 203
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGRLKRQAA 506
P P + + PGQKVGLIAAR TG L+ AA
Sbjct: 204 NPV-DHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAA 250
Score = 113 (39.8 bits), Expect = 0.00065, P = 0.00065
Identities = 17/20 (85%), Positives = 19/20 (95%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEHPHGG 390
NCWP+ RGVAMNPV+HPHGG
Sbjct: 193 NCWPRTRGVAMNPVDHPHGG 212
>gi|132856|sp|P20276|RL2_HALMA 50S RIBOSOMAL PROTEIN L2P (HMAL2) (HL4)
>gi|71079|pir||R5HS2L ribosomal protein L2 [similarity] -
Haloarcula marismortui >gi|148804|gb|AAA86862.1| (J05222) ribosomal
protein L2 [Haloarcula marismortui]
Length = 240
Frame 3 hits (HSPs): ______________________ ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 212 (74.6 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 46/106 (43%), Positives = 59/106 (55%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G + G A + GN LPL IPEG +CNVE GD G FARASG A +++H D +
Sbjct: 78 GDELQVGVDAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRN 135
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+ +KLPSG + C A I V GGG T +KAGN +H +
Sbjct: 136 VAVVKLPSGEMKRLDPQCRATIGVVGGGGRTDKPFVKAGNKHHKMK 181
Score = 86 (30.3 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 15/21 (71%), Positives = 16/21 (76%), Frame = +1
Query: 328 GNCWPKVRGVAMNPVEHPHGG 390
G WP VRGVAMN V+HP GG
Sbjct: 184 GTKWPNVRGVAMNAVDHPFGG 204
Score = 63 (22.2 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 12/18 (66%), Positives = 16/18 (88%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGR 488
+APPG+KVG IA++ TGR
Sbjct: 219 NAPPGRKVGDIASKRTGR 236
>gi|10120920|pdb|1FFK|A Chain A, Crystal Structure Of The Large Ribosomal
Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 239
Frame 3 hits (HSPs): _______________________ ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
Plus Strand HSPs:
Score = 212 (74.6 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 46/106 (43%), Positives = 59/106 (55%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G + G A + GN LPL IPEG +CNVE GD G FARASG A +++H D +
Sbjct: 77 GDELQVGVDAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRN 134
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+ +KLPSG + C A I V GGG T +KAGN +H +
Sbjct: 135 VAVVKLPSGEMKRLDPQCRATIGVVGGGGRTDKPFVKAGNKHHKMK 180
Score = 86 (30.3 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 15/21 (71%), Positives = 16/21 (76%), Frame = +1
Query: 328 GNCWPKVRGVAMNPVEHPHGG 390
G WP VRGVAMN V+HP GG
Sbjct: 183 GTKWPNVRGVAMNAVDHPFGG 203
Score = 63 (22.2 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 12/18 (66%), Positives = 16/18 (88%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGR 488
+APPG+KVG IA++ TGR
Sbjct: 218 NAPPGRKVGDIASKRTGR 235
>gi|11499506 ref|NP_070747.1| LSU ribosomal protein L2P (rpl2P) [Archaeoglobus
fulgidus] >gi|3914724|sp|O28357|RL2_ARCFU 50S RIBOSOMAL PROTEIN L2P
>gi|7440615|pir||A69490 LSU ribosomal protein L2P (rpl2P) homolog -
Archaeoglobus fulgidus >gi|2648624|gb|AAB89334.1| (AE000971) LSU
ribosomal protein L2P (rpl2P) [Archaeoglobus fulgidus]
Length = 237
Frame 3 hits (HSPs): ______________________ _____
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 237
0 50 100 150 200
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 42/106 (39%), Positives = 57/106 (53%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G +Y G + GN+ L++IPEG +CN+E GD G F RASG + V+S D
Sbjct: 77 GDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSREADKV 136
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+++PSG +C AMI VAGGG T +KAG YH +
Sbjct: 137 L--VQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMK 180
Score = 85 (29.9 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 14/18 (77%), Positives = 16/18 (88%), Frame = +1
Query: 337 WPKVRGVAMNPVEHPHGG 390
WP+VRGVAMN V+HP GG
Sbjct: 186 WPRVRGVAMNAVDHPFGG 203
Score = 66 (23.2 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 13/17 (76%), Positives = 15/17 (88%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTG 485
+APPG+KVG IAAR TG
Sbjct: 218 NAPPGRKVGSIAARRTG 234
Score = 39 (13.7 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 8/18 (44%), Positives = 9/18 (50%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QH+G TV R
Sbjct: 200 PFGGGKHQHVGKPKTVSR 217
>gi|3122698|sp|O26113|RL2_METTH 50S RIBOSOMAL PROTEIN L2P
>gi|7440613|pir||F69165 ribosomal protein L2 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621052|gb|AAB84525.1|
(AE000795) ribosomal protein L8 (E.coli L2) [Methanothermobacter
thermautotrophicus]
Length = 241
Frame 3 hits (HSPs): _____________________ ____
Frame 1 hits (HSPs): ____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 241
0 50 100 150 200
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 14..239
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..77
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 82..204
PRODOM PD086576: RL2(9) RL8(3) 206..236
__________________
Plus Strand HSPs:
Score = 217 (76.4 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 47/103 (45%), Positives = 58/103 (56%), Frame = +3
Query: 12 IYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSR 191
+ CG KA + GN LPL IPEG I N+E+ GD G R+SG YA +I+H D D +
Sbjct: 84 VECGVKARVKPGNSLPLSEIPEGTPIYNIENRPGDGGKLVRSSGTYASLITH--DADKAV 141
Query: 192 IKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
I+LPSG + C A + VAGGG LKAG YH R
Sbjct: 142 IELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALR 184
Score = 74 (26.0 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 13/15 (86%), Positives = 14/15 (93%), Frame = +1
Query: 346 VRGVAMNPVEHPHGG 390
VRGVAMN V+HPHGG
Sbjct: 193 VRGVAMNAVDHPHGG 207
Score = 67 (23.6 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 13/17 (76%), Positives = 15/17 (88%), Frame = +3
Query: 438 APPGQKVGLIAARXTGR 488
APPG+KVG IAAR TG+
Sbjct: 223 APPGRKVGSIAARRTGK 239
>gi|2119104|pir||D64322 ribosomal protein L2 - Methanococcus jannaschii
Length = 246
Frame 3 hits (HSPs): ______________________ ____
Frame 1 hits (HSPs): ____
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 195..206
__________________
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 45/106 (42%), Positives = 59/106 (55%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I CG A + GN+LPL +IPEG + N+E GD G RA G YA +++H D +
Sbjct: 85 GDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTH--DGE 142
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+ +KLPSG + S C A I VAGGG +KAG YH +
Sbjct: 143 RTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMK 188
Score = 85 (29.9 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 14/18 (77%), Positives = 16/18 (88%), Frame = +1
Query: 337 WPKVRGVAMNPVEHPHGG 390
WP+VRGVAMN V+HP GG
Sbjct: 194 WPRVRGVAMNAVDHPFGG 211
Score = 57 (20.1 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 11/15 (73%), Positives = 13/15 (86%), Frame = +3
Query: 441 PPGQKVGLIAARXTG 485
PPG+KVG I+AR TG
Sbjct: 229 PPGRKVGHISARRTG 243
>gi|3334483|sp|P54017|RL2_METJA 50S RIBOSOMAL PROTEIN L2P
>gi|2826257|gb|AAB98164.1| (U67474) LSU ribosomal protein L2P
(rplB) [Methanococcus jannaschii]
Length = 242
Frame 3 hits (HSPs): ______________________ ____
Frame 1 hits (HSPs): ____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 242
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 12..240
PFAM Ribosomal_L2: Ribosomal Proteins L2 14..239
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..81
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 84..203
PRODOM PD086576: RL2(9) RL8(3) 205..237
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 191..202
__________________
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 45/106 (42%), Positives = 59/106 (55%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I CG A + GN+LPL +IPEG + N+E GD G RA G YA +++H D +
Sbjct: 81 GDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTH--DGE 138
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+ +KLPSG + S C A I VAGGG +KAG YH +
Sbjct: 139 RTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMK 184
Score = 85 (29.9 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 14/18 (77%), Positives = 16/18 (88%), Frame = +1
Query: 337 WPKVRGVAMNPVEHPHGG 390
WP+VRGVAMN V+HP GG
Sbjct: 190 WPRVRGVAMNAVDHPFGG 207
Score = 57 (20.1 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 11/15 (73%), Positives = 13/15 (86%), Frame = +3
Query: 441 PPGQKVGLIAARXTG 485
PPG+KVG I+AR TG
Sbjct: 225 PPGRKVGHISARRTG 239
>gi|11134366|sp|Q9UXA5|RL2_SULSO 50S RIBOSOMAL PROTEIN L2P
>gi|6015760|emb|CAB57587.1| (Y18930) ribosomal protein L2 (HMAL2)
[Sulfolobus solfataricus] >gi|12312268|emb|CAC23131.1| (AL512964)
ribosomal protein L2 (HMAL2) [Sulfolobus solfataricus]
Length = 238
Frame 3 hits (HSPs): _____________________ ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 192 (67.6 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 40/101 (39%), Positives = 58/101 (57%), Frame = +3
Query: 21 GKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKL 200
GK + + GNV+ + PEG ++CNVE + GD G +AR++G YA+V+ + D I+L
Sbjct: 82 GKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDRVLIRL 139
Query: 201 PSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRV 323
PS V + A + VAGGG LLKAG Y ++V
Sbjct: 140 PSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKV 180
Score = 88 (31.0 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 15/18 (83%), Positives = 16/18 (88%), Frame = +1
Query: 337 WPKVRGVAMNPVEHPHGG 390
WP VRGVAMN V+HPHGG
Sbjct: 185 WPIVRGVAMNVVDHPHGG 202
Score = 70 (24.6 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 14/18 (77%), Positives = 16/18 (88%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGR 488
+APPG+KVG IAAR TGR
Sbjct: 217 NAPPGRKVGHIAARRTGR 234
>gi|6685860|sp|Q9YFN1|RL2_AERPE 50S RIBOSOMAL PROTEIN L2P
>gi|7440634|pir||H72778 probable ribosomal protein L2 APE0218 -
Aeropyrum pernix (strain K1) >gi|5103609|dbj|BAA79130.1|
(AP000058) 238aa long hypothetical 50S ribosomal protein L2
[Aeropyrum pernix]
Length = 238
Frame 3 hits (HSPs): _______________________ _____
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 188 (66.2 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 44/107 (41%), Positives = 57/107 (53%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G A GN+LPL IPEG + NVE GD G AR +G YA+V+
Sbjct: 77 GQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GA 134
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRV 323
+ ++LPSG VP+D A I AG G ++KAG AYH ++V
Sbjct: 135 KTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKV 181
Score = 85 (29.9 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 14/18 (77%), Positives = 16/18 (88%), Frame = +1
Query: 337 WPKVRGVAMNPVEHPHGG 390
WP+VRGVAMN V+HP GG
Sbjct: 186 WPRVRGVAMNAVDHPFGG 203
Score = 77 (27.1 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 16/20 (80%), Positives = 17/20 (85%), Frame = +3
Query: 438 APPGQKVGLIAARXTGRLKR 497
APPG+KVG IAAR TGR KR
Sbjct: 219 APPGRKVGHIAARRTGRRKR 238
Score = 38 (13.4 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 9/18 (50%), Positives = 9/18 (50%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QH G STV R
Sbjct: 200 PFGGGRHQHKGRPSTVAR 217
>gi|132853|sp|P13023|RL2_DICDI 60S RIBOSOMAL PROTEIN L2 >gi|71076|pir||R5DO2
ribosomal protein L8.e - slime mold (Dictyostelium discoideum)
>gi|7355|emb|CAA33741.1| (X15710) ribosomal protein L2 (AA 1-237)
[Dictyostelium discoideum]
Length = 237
Frame 3 hits (HSPs): ________________________
Frame 1 hits (HSPs): _____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 237
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 8..236
PFAM Ribosomal_L2: Ribosomal Proteins L2 14..235
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 15..85
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 103..209
PRODOM PD160549: RL2_DICDI 211..236
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 198..209
__________________
Plus Strand HSPs:
Score = 256 (90.1 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 49/109 (44%), Positives = 68/109 (62%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F++ GKKATL + ++LP+ +PEG +ICNVE +GD G AR SG+YA ++SHNPD
Sbjct: 86 GQFVFAGKKATLTIRHILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEG 145
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR 329
+ ++ S AMI VAGGG +LKAG A+H +RV +
Sbjct: 146 VTLYQITIRFKEERSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKK 194
Score = 84 (29.6 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 15/16 (93%), Positives = 15/16 (93%), Frame = +1
Query: 331 NCWPKVRGVAMNPVEH 378
N WPKVRGVAMNPVEH
Sbjct: 195 NNWPKVRGVAMNPVEH 210
>gi|2851428|sp|Q06843|RL2_HALHA 50S RIBOSOMAL PROTEIN L2P
>gi|11383685|pir||T43819 ribosomal protein L2 [similarity] -
Halobacterium salinarum >gi|2425179|dbj|BAA22273.1| (AB006961)
ribosomal protein L2 [Halobacterium halobium]
Length = 237
Frame 3 hits (HSPs): ______________________ ____
Frame 1 hits (HSPs): _____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 237
0 50 100 150 200
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 13..236
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 13..76
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 80..197
PRODOM PD086576: RL2(9) RL8(3) 206..229
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 186..197
__________________
Plus Strand HSPs:
Score = 191 (67.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 43/106 (40%), Positives = 57/106 (53%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I AT+ GN LPL IPEG +CNVE H GD G R + A +++H + D
Sbjct: 77 GDTIEIESSATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKLPRGRVN-ADLVTH--ERD 133
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+ ++L SG + DC A I VAGGG T +KAGN +H +
Sbjct: 134 ATIVELASGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMK 179
Score = 82 (28.9 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 14/20 (70%), Positives = 16/20 (80%), Frame = +1
Query: 328 GNCWPKVRGVAMNPVEHPHG 387
G WP+VRGVAMN V+HP G
Sbjct: 182 GTKWPRVRGVAMNAVDHPFG 201
Score = 60 (21.1 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 12/18 (66%), Positives = 15/18 (83%), Frame = +3
Query: 435 DAPPGQKVGLIAARXTGR 488
DA PG+KVG IA++ TGR
Sbjct: 216 DAAPGRKVGDIASKRTGR 233
>gi|132859|sp|P21479|RL2_METVA 50S RIBOSOMAL PROTEIN L2P >gi|80976|pir||S11596
ribosomal protein L2 - Methanococcus vannielii
Length = 237
Frame 3 hits (HSPs): ______________________ ___
Frame 1 hits (HSPs): _____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 237
0 50 100 150 200
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 14..237
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 14..80
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 82..203
PRODOM PD086576: RL2(9) RL8(3) 206..236
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 191..202
__________________
Plus Strand HSPs:
Score = 194 (68.3 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 45/103 (43%), Positives = 56/103 (54%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I CG A + GNVLPL IPEG + N+E GD G RA G YA V++H D
Sbjct: 81 GEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIG 138
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYH 311
+ +KLPSG ++ C A I VAGGG +KAG +H
Sbjct: 139 KTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHH 181
Score = 91 (32.0 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 15/18 (83%), Positives = 17/18 (94%), Frame = +1
Query: 337 WPKVRGVAMNPVEHPHGG 390
WPKVRGVAMN V+HP+GG
Sbjct: 190 WPKVRGVAMNAVDHPYGG 207
Score = 44 (15.5 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 9/13 (69%), Positives = 11/13 (84%), Frame = +3
Query: 444 PGQKVGLIAARXT 482
PG+KVG IA+R T
Sbjct: 225 PGRKVGHIASRRT 237
>gi|629395|pir||S43423 ribosomal protein L2 - Halobacterium halobium (fragment)
Length = 208
Frame 3 hits (HSPs): _________________________
Frame 1 hits (HSPs): ______
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
__________________
Annotated Domains:
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 186..197
__________________
Plus Strand HSPs:
Score = 191 (67.2 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 43/106 (40%), Positives = 57/106 (53%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I AT+ GN LPL IPEG +CNVE H GD G R + A +++H + D
Sbjct: 77 GDTIEIESSATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKLPRGRVN-ADLVTH--ERD 133
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
+ ++L SG + DC A I VAGGG T +KAGN +H +
Sbjct: 134 ATIVELASGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMK 179
Score = 82 (28.9 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 14/20 (70%), Positives = 16/20 (80%), Frame = +1
Query: 328 GNCWPKVRGVAMNPVEHPHG 387
G WP+VRGVAMN V+HP G
Sbjct: 182 GTKWPRVRGVAMNAVDHPFG 201
>gi|3914723|sp|O15574|RL2_ENTHI 60S RIBOSOMAL PROTEIN L2 (L8)
>gi|2350860|dbj|BAA21969.1| (AB002705) ribosomal protein L8
[Entamoeba histolytica]
Length = 158
Frame 3 hits (HSPs): _______________________
Annotated Domains: ____________________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 33..146
__________________
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 46/70 (65%), Positives = 57/70 (81%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G +IYCG KA+L +GNVLP+ PEG V+CNVE GDRG+ ARASG+YA VISHN DN+
Sbjct: 76 GQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNE 135
Query: 183 TSRIKLPSGS 212
T+RI+LPSG+
Sbjct: 136 TTRIRLPSGA 145
>gi|3851579|gb|AAC72358.1| (AF091511) ribosomal protein L8 [Mus musculus]
Length = 143
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 250 (88.0 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 45/82 (54%), Positives = 61/82 (74%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G F+YCGKKA L +GNVLP+ ++PEG ++C +E GDRG ARASG+YA VISHNP+
Sbjct: 61 GQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETK 120
Query: 183 TSRIKLPSGSXXIVPSDCXAMI 248
+R+KLPSGS ++ S A++
Sbjct: 121 KTRVKLPSGSKKVISSANRAVV 142
>gi|10640614|emb|CAC12392.1| (AL445067) probable 50S ribosomal protein L2
[Thermoplasma acidophilum]
Length = 233
Frame 3 hits (HSPs): _______________________ ____
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 233
0 50 100 150 200
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 7.4e-20, Sum P(3) = 7.4e-20
Identities = 37/106 (34%), Positives = 53/106 (50%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G ++ G L +IP+G+ + N+E GD G F R++G +A+V+SH +
Sbjct: 73 GQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG-QHV 131
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFR 320
T +KLPSG C A + VA G +LKAG H R
Sbjct: 132 T--LKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLR 175
Score = 72 (25.3 bits), Expect = 7.4e-20, Sum P(3) = 7.4e-20
Identities = 13/15 (86%), Positives = 13/15 (86%), Frame = +1
Query: 346 VRGVAMNPVEHPHGG 390
VRGVAMN V HPHGG
Sbjct: 184 VRGVAMNAVNHPHGG 198
Score = 46 (16.2 bits), Expect = 7.4e-20, Sum P(3) = 7.4e-20
Identities = 8/16 (50%), Positives = 13/16 (81%), Frame = +3
Query: 429 GVDAPPGQKVGLIAAR 476
G +APPG+KVG ++ +
Sbjct: 211 GRNAPPGRKVGRLSPK 226
Score = 43 (15.1 bits), Expect = 7.0e-17, Sum P(3) = 7.0e-17
Identities = 9/18 (50%), Positives = 10/18 (55%), Frame = +2
Query: 380 PTEGXXXQHIGHASTVRR 433
P G QH+G STV R
Sbjct: 195 PHGGGNHQHVGRPSTVGR 212
>gi|10581162|gb|AAG19939.1| (AE005077) 50S ribosomal protein L2P; Rpl2p
[Halobacterium sp. NRC-1]
Length = 240
Frame 3 hits (HSPs): _________________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 242 (85.2 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 64/162 (39%), Positives = 84/162 (51%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G AT+ GN LPL IPEG +CNVE H GD G FARA G A +++H + D
Sbjct: 78 GDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERD 135
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXR----ELLAQGS 350
+ ++LPSG + DC A I VAGGG T +KAGN +H + +
Sbjct: 136 ATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAM 195
Query: 351 WCCYEPC*ASPRRXVIXSILVTQVLSGVDAPPGQKVGLIAARXTGR 488
P R+ V++ DA PG+KVG IA++ TGR
Sbjct: 196 NAVDHPFGGGGRQHPGRPKSVSR-----DAAPGRKVGDIASKRTGR 236
Score = 88 (31.0 bits), Expect = 0.78, P = 0.54
Identities = 15/21 (71%), Positives = 17/21 (80%), Frame = +1
Query: 328 GNCWPKVRGVAMNPVEHPHGG 390
G WP+VRGVAMN V+HP GG
Sbjct: 184 GTKWPRVRGVAMNAVDHPFGG 204
>gi|6647722|sp|O59421|RL2_PYRHO 50S RIBOSOMAL PROTEIN L2P
>gi|7440612|pir||D71187 probable ribosomal protein L2 - Pyrococcus
horikoshii >gi|3258208|dbj|BAA30891.1| (AP000007) 239aa long
hypothetical 50S ribosomal protein L2 [Pyrococcus horikoshii]
Length = 239
Frame 3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
Plus Strand HSPs:
Score = 233 (82.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 67/164 (40%), Positives = 87/164 (53%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G IY G A + +GN LPL IPEG I N+E GD G + RA G YA+V+S + D
Sbjct: 80 GQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKD 137
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
++LPSG +C A I VAGGG L+KAG AY+ ++ + W
Sbjct: 138 KVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKF-----W--- 189
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVD------------APPGQKVGLIAARXTGRLK 494
P +PR + + V G + APPG+KVG IAAR TGR K
Sbjct: 190 -P---TPRGVKMNA--VNHPFGGKEHHPGKPTTTSRRAPPGRKVGHIAARRTGRRK 239
>gi|12585331|sp|Q9V1T8|RL2_PYRAB 50S RIBOSOMAL PROTEIN L2P
>gi|7440633|pir||F75147 lsu ribosomal protein l2p (rpl2p) PAB2122 -
Pyrococcus abyssi (strain Orsay) >gi|5457771|emb|CAB49261.1|
(AJ248284) LSU ribosomal protein L2P (rpl2P) [Pyrococcus abyssi]
Length = 239
Frame 3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
Plus Strand HSPs:
Score = 233 (82.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 66/164 (40%), Positives = 86/164 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G IY G A + +GN LPL IPEG + N+E GD G + RA G YA+V+S + D
Sbjct: 80 GQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKD 137
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGNAYHXFRVXRELLAQGSWCCY 362
++LPSG +C A I VAGGG L+KAG AY+ ++ W
Sbjct: 138 KVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRF-----W--- 189
Query: 363 EPC*ASPRRXVIXSILVTQVLSGVD------------APPGQKVGLIAARXTGRLK 494
P +PR + + V G + APPG+KVG IAAR TGR K
Sbjct: 190 -P---TPRGVKMNA--VNHPFGGKEHHPGKPTTTSRRAPPGRKVGHIAARRTGRRK 239
>gi|11022833|gb|AAG26146.1| (AF123798) ribosomal protein L2 [Trochodendron
aralioides]
Length = 201
Frame 3 hits (HSPs): __________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 33/100 (33%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 65 GDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 122
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ +KLPSG ++ +C A + V G L +AG+
Sbjct: 123 SATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 162
Score = 92 (32.4 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 19/33 (57%), Positives = 20/33 (60%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGV MNPV+HPHGG A RK
Sbjct: 164 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 196
>gi|9081961|gb|AAF82677.1| (AF188855) ribosomal protein L2 [Nymphaea odorata]
Length = 201
Frame 3 hits (HSPs): __________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 32/100 (32%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 65 GDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 122
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ ++LPSG ++ +C A + V G L +AG+
Sbjct: 123 SATLRLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS 162
Score = 92 (32.4 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 19/33 (57%), Positives = 20/33 (60%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGV MNPV+HPHGG A RK
Sbjct: 164 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 196
>gi|11022807|gb|AAG26133.1| (AF123785) ribosomal protein L2 [Acorus calamus]
Length = 201
Frame 3 hits (HSPs): __________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 32/100 (32%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 65 GDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 122
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ ++LPSG ++ +C A + V G L +AG+
Sbjct: 123 SATLRLPSGEVRLISKNCSATVGQVGNVGANQQSLGRAGS 162
Score = 92 (32.4 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 19/33 (57%), Positives = 20/33 (60%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGV MNPV+HPHGG A RK
Sbjct: 164 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 196
>gi|11022811|gb|AAG26135.1| (AF123787) ribosomal protein L2 [Cabomba
caroliniana]
Length = 200
Frame 3 hits (HSPs): _________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 32/100 (32%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 65 GDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 122
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ ++LPSG ++ +C A + V G L +AG+
Sbjct: 123 SATLRLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS 162
Score = 92 (32.4 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 19/33 (57%), Positives = 20/33 (60%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGV MNPV+HPHGG A RK
Sbjct: 164 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 196
>gi|11022829|gb|AAG26144.1| (AF123796) ribosomal protein L2 [Liriodendron
tulipifera]
Length = 201
Frame 3 hits (HSPs): __________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 32/100 (32%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 65 GDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 122
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ ++LPSG ++ +C A + V G L +AG+
Sbjct: 123 SATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 162
Score = 92 (32.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 19/33 (57%), Positives = 20/33 (60%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGV MNPV+HPHGG A RK
Sbjct: 164 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 196
>gi|11022831|gb|AAG26145.1| (AF123797) ribosomal protein L2 [Saururus cernuus]
Length = 197
Frame 3 hits (HSPs): __________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 32/100 (32%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 64 GDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 121
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ ++LPSG ++ +C A + V G L +AG+
Sbjct: 122 SATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 161
Score = 92 (32.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 19/33 (57%), Positives = 20/33 (60%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGV MNPV+HPHGG A RK
Sbjct: 163 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 195
>gi|11022821|gb|AAG26140.1| (AF123792) ribosomal protein L2 [Drimys winteri]
Length = 201
Frame 3 hits (HSPs): __________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 32/100 (32%), Positives = 52/100 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G I G + + +GN LPL +P G I N+E +G G ARA+G A +I+ +
Sbjct: 65 GDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGK 122
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAGN 302
++ ++LPSG ++ +C A + V G L +AG+
Sbjct: 123 SATLRLPSGEVRLIYKNCLATVGQVGNVGVNQKNLGRAGS 162
Score = 96 (33.8 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 20/33 (60%), Positives = 21/33 (63%), Frame = +1
Query: 334 CW----PKVRGVAMNPVEHPHGGXXSPAYWSRK 420
CW P VRGVAMNPV+HPHGG A RK
Sbjct: 164 CWLGKRPVVRGVAMNPVDHPHGGGEGRAPIGRK 196
>gi|6225993|sp|Q9ZCQ8|RL2_RICPR 50S RIBOSOMAL PROTEIN L2
>gi|7440619|pir||F71671 ribosomal protein L2 - Rickettsia
prowazekii >gi|3861196|emb|CAA15096.1| (AJ235272) 50S RIBOSOMAL
PROTEIN L2 (rplB) [Rickettsia prowazekii]
Length = 273
Frame 3 hits (HSPs): ___________________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 35/99 (35%), Positives = 52/99 (52%), Frame = +3
Query: 3 GXFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDND 182
G + + A + +GN LPL+SIP G + NVE +G G AR++G ++ D+
Sbjct: 113 GDRVISSQAADIKIGNCLPLKSIPIGTTLHNVEMKIGKGGQIARSAGTSVELVGK--DSG 170
Query: 183 TSRIKLPSGSXXIVPSDCXAMIXXVAGGGXTXXXLLKAG 299
++IKL SG +VP DC A I ++ L KAG
Sbjct: 171 YAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG 209
Score = 90 (31.7 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 16/19 (84%), Positives = 17/19 (89%), Frame = +1
Query: 337 W-PKVRGVAMNPVEHPHGG 390
W P VRGVAMNPV+HPHGG
Sbjct: 216 WRPHVRGVAMNPVDHPHGG 234
WARNING: HSPs involving 128 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.337 0.149 0.482
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.366 0.162 0.722
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.332 0.142 0.431
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.317 0.131 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.333 0.139 0.472
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.367 0.163 0.651
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 201 182 10. 76 3 12 22 0.12 34
31 0.12 37
+2 0 201 184 10. 76 3 12 22 0.12 34
31 0.12 37
+1 0 201 182 10. 76 3 12 22 0.12 34
31 0.12 37
-1 0 201 182 10. 76 3 12 22 0.11 34
31 0.12 37
-2 0 201 184 10. 76 3 12 22 0.12 34
31 0.12 37
-3 0 201 183 10. 76 3 12 22 0.12 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 178
No. of states in DFA: 595 (59 KB)
Total size of DFA: 210 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:01
No. of threads or processors used: 6
Search cpu time: 178.20u 0.96s 179.16t Elapsed: 00:00:55
Total cpu time: 178.28u 0.99s 179.27t Elapsed: 00:00:56
Start: Mon Oct 1 16:26:24 2001 End: Mon Oct 1 16:27:20 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000