R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6689385|emb|CAB65463.1| (AJ238624) translation initiation factor 5A
precursor protein (eIF-5A) [Senecio vernalis]
Length = 159
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 441 (155.2 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 84/89 (94%), Positives = 87/89 (97%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLKLPTD+ALL QIKDG
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F EGKDLVVSVMSAMGEEQIC+LKDIGPK
Sbjct: 131 FGEGKDLVVSVMSAMGEEQICALKDIGPK 159
>gi|124226|sp|P24922|IF52_NICPL INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D)
>gi|100278|pir||S21059 translation initiation factor eIF-5A.2 -
curled-leaved tobacco >gi|19702|emb|CAA45104.1| (X63542) eukaryotic
initiation factor 5A (2) [Nicotiana plumbaginifolia]
Length = 159
Frame 1 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..154
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..117
PRODOM PD003614: IF51(2) IF5A(2) 123..158
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 433 (152.4 bits), Expect = 7.9e-40, P = 7.9e-40
Identities = 82/89 (92%), Positives = 87/89 (97%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTD+ LL QIKDG
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F+EGKDLVVSVMSAMGEEQIC+LKDIGPK
Sbjct: 131 FAEGKDLVVSVMSAMGEEQICALKDIGPK 159
>gi|3024022|sp|P56337|IF55_SOLTU INITIATION FACTOR 5A-5 (EIF-5A) (EIF-4D)
>gi|2225885|dbj|BAA20879.1| (AB004826) eukaryotic initiation factor
5A5 [Solanum tuberosum]
Length = 159
Frame 1 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..154
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..117
PRODOM PD003614: IF51(2) IF5A(2) 122..158
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 432 (152.1 bits), Expect = 1.0e-39, P = 1.0e-39
Identities = 80/89 (89%), Positives = 87/89 (97%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTD+ LLAQ+KDG
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F+EGKDLV+SVMSAMGEEQIC +KDIGPK
Sbjct: 131 FAEGKDLVLSVMSAMGEEQICGIKDIGPK 159
>gi|3024021|sp|P56336|IF54_SOLTU INITIATION FACTOR 5A-4 (EIF-5A) (EIF-4D)
>gi|2225883|dbj|BAA20878.1| (AB004825) eukaryotic initiation factor
5A4 [Solanum tuberosum]
Length = 159
Frame 1 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..154
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..117
PRODOM PD003614: IF51(2) IF5A(2) 122..158
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 429 (151.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 82/89 (92%), Positives = 88/89 (98%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDL+LPTD++LL+QIKDG
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F+EGKDLVVSVMSAMGEEQI +LKDIGPK
Sbjct: 131 FAEGKDLVVSVMSAMGEEQINALKDIGPK 159
>gi|6752917|gb|AAF27938.1|AF225297_1 (AF225297) translation initiation factor
5A [Euphorbia esula]
Length = 156
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 156
0 50 100 150
Plus Strand HSPs:
Score = 424 (149.3 bits), Expect = 7.1e-39, P = 7.1e-39
Identities = 79/89 (88%), Positives = 87/89 (97%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTDE+LL+QIKDG
Sbjct: 68 LEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDESLLSQIKDG 127
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F +GKDLVV+VMS+MGEEQIC+LKDIGPK
Sbjct: 128 FGDGKDLVVTVMSSMGEEQICALKDIGPK 156
>gi|124224|sp|P24921|IF51_NICPL INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D)
>gi|100345|pir||S21060 translation initiation factor eIF-5A -
common tobacco >gi|19887|emb|CAA45105.1| (X63543) eukaryotic
initiatin factor 5A (3) [Nicotiana tabacum]
Length = 159
Frame 1 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
DOMO DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 28..156
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..154
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..117
PRODOM PD003614: IF51(2) IF5A(2) 123..158
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 9.0e-39, P = 9.0e-39
Identities = 79/89 (88%), Positives = 86/89 (96%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTD+ LLA IKDG
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F+EGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 131 FAEGKDLVLSVMSAMGEEQICGIKDVGPK 159
>gi|100277|pir||S21058 translation initiation factor eIF-5A.1 - curled-leaved
tobacco (fragment) >gi|829282|emb|CAA45103.1| (X63541) eukaryotic
initiation factor 5A (1) [Nicotiana plumbaginifolia]
Length = 145
Frame 1 hits (HSPs): _______________________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | 145
0 50 100
__________________
Annotated Domains:
Entrez modified site: N6-(4-amino-2-hydroxybuty 38
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 36..43
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 9.0e-39, P = 9.0e-39
Identities = 79/89 (88%), Positives = 86/89 (96%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTD+ LLA IKDG
Sbjct: 57 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDG 116
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F+EGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 117 FAEGKDLVLSVMSAMGEEQICGIKDVGPK 145
>gi|124230|sp|P26564|IF5A_MEDSA INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|72894|pir||FIAAA translation initiation factor eIF-5A - alfalfa
>gi|19601|emb|CAA42065.1| (X59441) eukaryotic translation
initiation factor 4D [Medicago sativa]
Length = 161
Frame 1 hits (HSPs): _____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 161
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..155
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..118
PRODOM PD003614: IF51(2) IF5A(2) 123..159
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 422 (148.6 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 81/91 (89%), Positives = 88/91 (96%), Frame = +1
Query: 25 LEDI-VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKD 201
LE++ VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLKLPTD++LL QIKD
Sbjct: 71 LEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKD 130
Query: 202 GFSEGKDLVVSVMSAMGEEQICSLKDIGPKN 294
GF+EGKDLVVSVMSAMGEEQIC+LKDIG KN
Sbjct: 131 GFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161
>gi|7705083|gb|AAF67762.1| (AC018364) putative eukaryotic initiation factor 5A
(eIF-5A) [Arabidopsis thaliana]
Length = 158
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 421 (148.2 bits), Expect = 1.5e-38, P = 1.5e-38
Identities = 78/89 (87%), Positives = 86/89 (96%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLTDNG+TKDDLKLPTDEALL Q+K+G
Sbjct: 70 LEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F EGKD+VVSVMSAMGEEQ+C+LK++GPK
Sbjct: 130 FEEGKDIVVSVMSAMGEEQMCALKEVGPK 158
>gi|3789948|gb|AAC67555.1| (AF094773) translation initiation factor 5A [Oryza
sativa]
Length = 160
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 160
0 50 100 150
Plus Strand HSPs:
Score = 416 (146.4 bits), Expect = 5.0e-38, P = 5.0e-38
Identities = 78/89 (87%), Positives = 86/89 (96%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRT+YQLIDISEDGFVSLLT++GNTKDDL+LPTD++LL QIK G
Sbjct: 72 LEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKTG 131
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F EGKDLVV+VMSAMGEEQIC+LKDIGPK
Sbjct: 132 FGEGKDLVVTVMSAMGEEQICALKDIGPK 160
>gi|3024019|sp|P56333|IF51_SOLTU INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|2225879|dbj|BAA20876.1| (AB004823) eukaryotic initiation factor
5A2 [Solanum tuberosum] >gi|2225887|dbj|BAA20880.1| (AB004827)
eukaryotic initiation factor 5A1 [Solanum tuberosum]
Length = 160
Frame 1 hits (HSPs): _____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 160
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..154
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..117
PRODOM PD003614: IF51(2) IF5A(2) 123..158
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 415 (146.1 bits), Expect = 6.4e-38, P = 6.4e-38
Identities = 78/90 (86%), Positives = 86/90 (95%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDL+LPTD+ALL Q+K G
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPKN 294
F EGKDLV+SVMSAMGEEQIC++KDIG K+
Sbjct: 131 FEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160
>gi|3024020|sp|P56335|IF53_SOLTU INITIATION FACTOR 5A-3 (EIF-5A) (EIF-4D)
>gi|7443511|pir||T07133 translation initiation factor eIF-5A3 -
potato >gi|2225881|dbj|BAA20877.1| (AB004824) eukaryotic initiation
factor 5A3 [Solanum tuberosum]
Length = 160
Frame 1 hits (HSPs): _____________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 160
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..154
PRODOM PD015048: IF51(2) IF5A(2) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..141
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 415 (146.1 bits), Expect = 6.4e-38, P = 6.4e-38
Identities = 79/90 (87%), Positives = 86/90 (95%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT++GNTKDDL+LPTDE+LL Q+KDG
Sbjct: 71 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDG 130
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPKN 294
F EGKDLVVSVMSAMGEEQI ++KDIG KN
Sbjct: 131 FQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160
>gi|3024018|sp|P56332|IF5A_MAIZE INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|7443512|pir||T01355 translation initiation factor eIF-5A -
maize >gi|1546919|emb|CAA69225.1| (Y07920) translation initiation
factor 5A [Zea mays] >gi|2668738|gb|AAB88614.1| (AF034943)
translation initiation factor 5A [Zea mays]
Length = 160
Frame 1 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 160
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 28..81
Entrez modified site: HYPUSINE (BY SIMILARITY). 53
PFAM eIF-5a: Eukaryotic initiation factor 5A 13..155
PRODOM PD015048: IF51(2) IF5A(2) 1..23
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 25..121
PRODOM PD003614: IF51(2) IF5A(2) 123..159
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 51..58
__________________
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 3.5e-37, P = 3.5e-37
Identities = 75/89 (84%), Positives = 84/89 (94%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCD+PHVNRT+YQLIDISEDGFVSLLT +GNTKDDL+LPTDE L+AQIK+G
Sbjct: 72 LEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEG 131
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F GKDLVV+V SAMGEEQIC+LKD+GPK
Sbjct: 132 FESGKDLVVTVQSAMGEEQICALKDVGPK 160
>gi|5080771|gb|AAD39281.1|AC007576_4 (AC007576) initiation factor 5A-4
[Arabidopsis thaliana]
Length = 158
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 406 (142.9 bits), Expect = 5.7e-37, P = 5.7e-37
Identities = 78/89 (87%), Positives = 83/89 (93%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLTDNG+TKDDLKLP D+ LL QIK G
Sbjct: 70 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSG 129
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F +GKDLVVSVMSAMGEEQI +LKDIGPK
Sbjct: 130 FDDGKDLVVSVMSAMGEEQINALKDIGPK 158
>gi|7387802|sp|O94083|IF5A_CANAL INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|4204352|gb|AAD10697.1| (U07366) eIF-5A [Candida albicans]
Length = 157
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 157
0 50 100 150
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 46/89 (51%), Positives = 70/89 (78%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+K+P E L +++
Sbjct: 69 LEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSE 126
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPK 291
F EGKDL+V+++SAMGEE S K+ PK
Sbjct: 127 FDEGKDLIVTIISAMGEEAAISYKE-APK 154
>gi|6469515|gb|AAF13315.1|AF109730_1 (AF109730) translation initiation factor
5A [Spodoptera exigua] >gi|6469517|gb|AAF13316.1|AF109731_1
(AF109731) translation initiation factor 5A [Spodoptera frugiperda]
Length = 160
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 160
0 50 100 150
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 42/83 (50%), Positives = 62/83 (74%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG+ ++DLK+P D L Q++ F
Sbjct: 72 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDF 130
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
GK+L+ +V+ + GEE + ++K
Sbjct: 131 DSGKELLCTVLKSCGEECVIAVK 153
>gi|7492108|pir||T40248 initiation factor eif-5a - fission yeast
(Schizosaccharomyces pombe) >gi|6048299|emb|CAB58162.1| (AL121815)
initiation factor eif-5a [Schizosaccharomyces pombe]
Length = 157
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 157
0 50 100 150
Plus Strand HSPs:
Score = 229 (80.6 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 44/84 (52%), Positives = 66/84 (78%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD++LP E L +I++GF
Sbjct: 72 EDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGF 129
Query: 208 SEGKDLVVSVMSAMGEEQICSLKD 279
EGKDL+++V+SAMGEE + +D
Sbjct: 130 EEGKDLIITVVSAMGEEIALACRD 153
>gi|3024014|sp|P56289|IF5A_SCHPO INITIATION FACTOR EIF-5A
>gi|7492107|pir||T38429 initiation factor eif-5a - fission yeast
(Schizosaccharomyces pombe) >gi|2398819|emb|CAB16195.1| (Z99126)
initiation factor eif-5a. [Schizosaccharomyces pombe]
Length = 157
Frame 1 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 157
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 27..80
Entrez modified site: HYPUSINE (BY SIMILARITY). 52
PFAM eIF-5a: Eukaryotic initiation factor 5A 12..152
PRODOM PD056987: IF5A_SCHPO 1..25
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 27..127
PRODOM PD192718: IF5A_SCHPO 129..156
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________
Plus Strand HSPs:
Score = 228 (80.3 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 43/84 (51%), Positives = 66/84 (78%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD++LP E L +I++GF
Sbjct: 72 EDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGF 129
Query: 208 SEGKDLVVSVMSAMGEEQICSLKD 279
EG+DL+++V+SAMGEE + +D
Sbjct: 130 DEGRDLIITVVSAMGEETALACRD 153
>gi|6322507 ref|NP_012581.1| anaerobically expressed form of translation
initiation factor eIF-5A; Anb1p >gi|124225|sp|P19211|IF51_YEAST
INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D) (HYPUSINE CONTAINING
PROTEIN HP1) >gi|72893|pir||FIBYA2 translation initiation factor
eIF-5A.2 - yeast (Saccharomyces cerevisiae)
>gi|3804|emb|CAA39692.1| (X56235) hypusine containing protein HP1
[Saccharomyces cerevisiae] >gi|171062|gb|AAA34425.1| (J05455)
protein synthesis initiation factor (eIF-4D) [Saccharomyces
cerevisiae] >gi|172982|gb|AAA35156.1| (M63542) initiation factor 5A
[Saccharomyces cerevisiae] >gi|1015705|emb|CAA89575.1| (Z49547) ORF
YJR047c [Saccharomyces cerevisiae] >gi|1197076|gb|AAA88750.1|
(L36344) ORF; putative [Saccharomyces cerevisiae]
Length = 157
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 157
0 50 100 150
Plus Strand HSPs:
Score = 226 (79.6 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 46/90 (51%), Positives = 67/90 (74%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD+K P E L ++
Sbjct: 70 LEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAA 127
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPKN 294
F EGKDL+V+++SAMGEE S K+ P++
Sbjct: 128 FDEGKDLMVTIISAMGEEAAISFKE-APRS 156
>gi|6320801 ref|NP_010880.1| Translation initiation factor eIF-5A; Hyp2p
>gi|124227|sp|P23301|IF52_YEAST INITIATION FACTOR 5A-2 (EIF-5A)
(EIF-4D) (HYPUSINE CONTAINING PROTEIN HP2) >gi|72892|pir||FIBYA1
translation initiation factor eIF-5A.1 - yeast (Saccharomyces
cerevisiae) >gi|3806|emb|CAA39693.1| (X56236) hypusine containing
protein HP2 [Saccharomyces cerevisiae] >gi|172980|gb|AAA35155.1|
(M63541) initiation factor 5A [Saccharomyces cerevisiae]
>gi|603645|gb|AAB65008.1| (U18779) Hyp2p: translation initiation
factor eIF-5A [Saccharomyces cerevisiae]
>gi|1181617|dbj|BAA11826.1| (D83166) eukaryotic translation
initiation factor 5A precursor [Saccharomyces cerevisiae]
Length = 157
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 157
0 50 100 150
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 45/85 (52%), Positives = 63/85 (74%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LED+ PS+HN +VP V R +YQL+DI +DGF+SL+ +G+TKDD+K P E L ++
Sbjct: 70 LEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGE-LGDSLQTA 127
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKD 279
F EGKDL+V+++SAMGEE S K+
Sbjct: 128 FDEGKDLMVTIISAMGEEAAISFKE 152
>gi|7291729|gb|AAF47151.1| (AE003462) CG3186 gene product [Drosophila
melanogaster]
Length = 159
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 209 (73.6 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 41/83 (49%), Positives = 61/83 (73%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
EDI PS+HN DVP+V R D QLI IS+D F++L+T++G+ ++DLK+P E L Q++ F
Sbjct: 71 EDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDF 129
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
GKDL+ +V+ A GEE + ++K
Sbjct: 130 DSGKDLLCTVLKACGEECVIAIK 152
>gi|585302|sp|Q07460|IF51_CHICK INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D)
>gi|2144950|pir||A42156 translation initiation factor eIF-5A I -
chicken >gi|289800|gb|AAA17444.1| (M99499) initiation factor 5A
[Gallus gallus]
Length = 153
Frame 1 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 25..78
DOMO DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 26..152
Entrez modified site: HYPUSINE (BY SIMILARITY). 50
PFAM eIF-5a: Eukaryotic initiation factor 5A 10..150
PRODOM PD192257: IF51_CHICK 1..23
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 25..119
PRODOM PD192988: IF51_CHICK 121..152
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 48..55
__________________
Plus Strand HSPs:
Score = 203 (71.5 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 41/83 (49%), Positives = 61/83 (73%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
EDI PS+HN DVP++ R DYQLI I +DG++SLLT++G ++DLKLP + L +I+ F
Sbjct: 70 EDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLPEGD-LGKEIEGKF 127
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
+ +D+ +SV+SAM EE ++K
Sbjct: 128 NANEDVQISVISAMNEECAVAIK 150
>gi|124231|sp|P10160|IF5A_RABIT INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|109296|pir||A31486 translation initiation factor eIF-5A -
rabbit
Length = 154
Frame 1 hits (HSPs): ___________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 24..77
Entrez blocked site: (PROBABLE). 2
Entrez modified site: HYPUSINE. 50
PFAM eIF-5a: Eukaryotic initiation factor 5A 9..149
PRODOM PD187609: IF5A(2) Q16182(1) 1..22
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 24..136
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 48..55
__________________
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 37/83 (44%), Positives = 61/83 (73%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
EDI PS+HN DVP++ R D+QLI I +DG++SLL D+G ++DL+LP + L +I+ +
Sbjct: 70 EDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKY 127
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
G++++++V+SAM EE ++K
Sbjct: 128 DSGEEILITVLSAMTEEAAVAIK 150
>gi|729823|sp|P38672|IF5A_NEUCR INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|1084977|pir||S55278 translation initiation factor eIF-5A -
Neurospora crassa >gi|409567|gb|AAA61707.1| (U02638) initiation
factor 5a [Neurospora crassa]
Length = 163
Frame 1 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 32..85
DOMO DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 33..159
Entrez modified site: HYPUSINE (BY SIMILARITY). 57
PFAM eIF-5a: Eukaryotic initiation factor 5A 17..157
PRODOM PD056991: IF5A_NEUCR 1..30
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 32..134
PRODOM PD192642: IF5A_NEUCR 136..162
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 55..62
__________________
Plus Strand HSPs:
Score = 193 (67.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 43/90 (47%), Positives = 56/90 (62%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDG 204
LED+ PS+HN DVP+V RTDYQ I ED F+ L+ NG K +LK+P E L +I+
Sbjct: 76 LEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRELKMPEGE-LAKRIEKL 133
Query: 205 FSEGKDLVVSVMSAMGEEQICSLKDIGPKN 294
EGKD V V +AMGEE +K+ K+
Sbjct: 134 EEEGKDFFVGVQTAMGEEAAIDVKEASNKD 163
>gi|4503545 ref|NP_001961.1| eukaryotic translation initiation factor 5A
>gi|124229|sp|P10159|IF5A_HUMAN INITIATION FACTOR 5A (EIF-5A)
(EIF-4D) (REV BINDING FACTOR) >gi|1360697|pir||FIHUA translation
initiation factor eIF-5A - human >gi|181997|gb|AAA58453.1| (M23419)
initiation factor 4D [Homo sapiens] >gi|453133|gb|AAB29229.1| REV
binding factor, eukaryotic initiation factor 5A, eIF-5A [human,
HeLa cells, Peptide Partial, 154 aa] >gi|602245|gb|AAA86989.1|
(U17969) eIF-5A [Homo sapiens]
Length = 154
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 192 (67.6 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 37/83 (44%), Positives = 61/83 (73%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
EDI PS+HN DVP++ R D+QLI I +DG++SLL D+G ++DL+LP + L +I+ +
Sbjct: 70 EDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKY 127
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
G++++++V+SAM EE ++K
Sbjct: 128 DCGEEILITVLSAMTEEAAVAIK 150
>gi|124228|sp|P13651|IF5A_DICDI INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|72891|pir||FIDOA translation initiation factor eIF-5A - slime
mold (Dictyostelium discoideum) >gi|7279|emb|CAA33095.1| (X14970)
eIF-4D (AA 1-169) [Dictyostelium discoideum]
>gi|226313|prf||1506341A initiation factor eIF4D [Dictyostelium
discoideum]
Length = 169
Frame 1 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 169
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 40..93
DOMO DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 41..167
Entrez modified site: HYPUSINE. 65
PFAM eIF-5a: Eukaryotic initiation factor 5A 25..165
PRODOM PD056992: IF5A_DICDI 1..38
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 40..152
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 63..70
__________________
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 38/83 (45%), Positives = 60/83 (72%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL G K+DL LP D+ + +I
Sbjct: 85 EEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQML 142
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
EGK+ +VSV+SA+G+E + S+K
Sbjct: 143 KEGKEPLVSVISALGKEGVVSVK 165
>gi|2119941|pir||I53801 gene eif-5A protein - human
>gi|4261795|gb|AAD14095.1|S72024_1 (S72024) eukaryotic initiation
factor 5A [Homo sapiens]
Length = 154
Frame 1 hits (HSPs): ___________________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
__________________
Annotated Domains:
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 48..55
__________________
Plus Strand HSPs:
Score = 189 (66.5 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 37/83 (44%), Positives = 60/83 (72%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGF 207
EDI PS+HN DVP++ R D+QLI I +DG++SLL D+G +DL+LP + L +I+ +
Sbjct: 70 EDICPSTHNMDVPNIRRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLPEGD-LGKEIEQKY 127
Query: 208 SEGKDLVVSVMSAMGEEQICSLK 276
G++++++V+SAM EE ++K
Sbjct: 128 DCGEEILITVLSAMTEEAAVAIK 150
>gi|2494321|sp|Q20751|IF52_CAEEL PROBABLE INITIATION FACTOR 5A (EIF-5A)
(EIF-4D) >gi|7504148|pir||T22628 hypothetical protein F54C9.1 -
Caenorhabditis elegans >gi|3877497|emb|CAA90247.1| (Z49967) similar
to initiation factor 5A~cDNA EST EMBL:D75952 comes from this
gene~cDNA EST EMBL:D74070 comes from this gene~cDNA EST EMBL:D74623
comes from this gene~cDNA EST EMBL:D74571 comes from this gene~cDNA
EST EMBL:D76331 comes from this gene~c>
Length = 161
Frame 1 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 161
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 29..82
Entrez modified site: HYPUSINE (BY SIMILARITY). 54
PFAM eIF-5a: Eukaryotic initiation factor 5A 14..156
PRODOM PD056989: IF51(1) IF52(1) 1..27
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 29..124
PRODOM PD193297: IF52_CAEEL 126..160
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 52..59
__________________
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 41/84 (48%), Positives = 57/84 (67%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT-DNGNTKDDLKLPTDEALLAQIKD 201
LEDI PS+HN DVP V R +Y L+ I +DG+ SL+ ++ KDDLKLP D L QI+D
Sbjct: 73 LEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRD 130
Query: 202 GFSEGK-DLVVSVMSAMGEEQICSLK 276
+ + + ++V V+SA+GEE I K
Sbjct: 131 AYEKDEGSVLVQVVSAIGEEAILGWK 156
>gi|432506|gb|AAB21933.1| eukaryotic translation initiation factor 5A isoform
II, eIF-5AII [chickens, Peptide Partial, 78 aa, segment 2 of 2]
Length = 78
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 156 (54.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 29/50 (58%), Positives = 39/50 (78%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDE 177
EDI PS+HN DVP++ R D+QLI I +DGF+SLL D+G ++DL+LP E
Sbjct: 27 EDIXPSTHNMDVPNIKRNDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE 75
>gi|477661|pir||B42156 translation initiation factor eIF-5A II - chicken
(fragment)
Length = 97
Frame 1 hits (HSPs): _________________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
__________________
Annotated Domains:
Entrez modified site: N6-(4-amino-2-hydroxybuty 26
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 24..31
__________________
Plus Strand HSPs:
Score = 156 (54.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 29/50 (58%), Positives = 39/50 (78%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDE 177
EDI PS+HN DVP++ R D+QLI I +DGF+SLL D+G ++DL+LP E
Sbjct: 46 EDIXPSTHNMDVPNIKRNDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE 94
>gi|729822|sp|Q09121|IF52_CHICK INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D)
Length = 101
Frame 1 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
__________________
Annotated Domains:
Entrez modified site: HYPUSINE (BY SIMILARITY). 30
PFAM eIF-5a: Eukaryotic initiation factor 5A 1..101
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 28..35
__________________
Plus Strand HSPs:
Score = 156 (54.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 29/50 (58%), Positives = 39/50 (78%), Frame = +1
Query: 28 EDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDE 177
EDI PS+HN DVP++ R D+QLI I +DGF+SLL D+G ++DL+LP E
Sbjct: 50 EDICPSTHNMDVPNIKRNDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE 98
>gi|462402|sp|P34563|IF51_CAEEL PROBABLE INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
>gi|3879493|emb|CAA81597.1| (Z27079) similar to initiation factor
5A~cDNA EST EMBL:D74625 comes from this gene~cDNA EST EMBL:D75463
comes from this gene~cDNA EST EMBL:D75831 comes from this gene~cDNA
EST EMBL:D72879 comes from this gene~cDNA EST EMBL:D76399 comes
from this gene~c>
Length = 161
Frame 1 hits (HSPs): ___________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 161
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00302: Eukaryotic initiation factor 5A 29..82
DOMO DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 30..158
Entrez modified site: HYPUSINE (BY SIMILARITY). 54
PFAM eIF-5a: Eukaryotic initiation factor 5A 14..156
PRODOM PD056989: IF51(1) IF52(1) 1..27
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 29..142
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 52..59
__________________
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 38/84 (45%), Positives = 54/84 (64%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT-DNGNTKDDLKLPTDEALLAQIKD 201
LEDI PS+HN DVP V R +Y L+ I EDGF SL+ ++ KDDLK+P + L I++
Sbjct: 73 LEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIRE 130
Query: 202 GFSEGK-DLVVSVMSAMGEEQICSLK 276
+ + ++V V++A GEE I K
Sbjct: 131 ALEKDEGSVLVQVVAACGEEAILGYK 156
>gi|482216|pir||S41010 translation initiation factor eIF-5A - Caenorhabditis
elegans
Length = 173
Frame 1 hits (HSPs): _________________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
Entrez modified site: N6-(4-amino-2-hydroxybuty 66
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 64..71
__________________
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 38/84 (45%), Positives = 54/84 (64%), Frame = +1
Query: 25 LEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT-DNGNTKDDLKLPTDEALLAQIKD 201
LEDI PS+HN DVP V R +Y L+ I EDGF SL+ ++ KDDLK+P + L I++
Sbjct: 85 LEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIRE 142
Query: 202 GFSEGK-DLVVSVMSAMGEEQICSLK 276
+ + ++V V++A GEE I K
Sbjct: 143 ALEKDEGSVLVQVVAACGEEAILGYK 168
>gi|432502|gb|AAB21930.1| eukaryotic translation initiation factor 5A isoform
I, eIF-5AI [chickens, Peptide Partial, 35 aa, segment 2 of 2]
Length = 35
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | 35
0 20
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.00066, P = 0.00066
Identities = 18/29 (62%), Positives = 25/29 (86%), Frame = +1
Query: 82 DYQLIDISEDGFVSLLTDNGNTKDDLKLP 168
DYQLI I +DG++SLLT++G ++DLKLP
Sbjct: 2 DYQLIGI-QDGYLSLLTESGEVREDLKLP 29
>gi|2696656|dbj|BAA24001.1| (AB009604) eIF5A [Schizosaccharomyces pombe]
Length = 33
Frame 1 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | 33
0 20
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.0033, P = 0.0033
Identities = 15/29 (51%), Positives = 24/29 (82%), Frame = +1
Query: 193 IKDGFSEGKDLVVSVMSAMGEEQICSLKD 279
I++GF EG+DL+++V+SAMGEE + +D
Sbjct: 1 IEEGFDEGRDLIITVVSAMGEETALACRD 29
>gi|418410|sp|P32631|YG26_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN ANP1-TIF51A
INTERGENIC REGION
Length = 200
Frame -3 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Minus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.0034, P = 0.0034
Identities = 30/101 (29%), Positives = 52/101 (51%), Frame = -3
Query: 321 YSY-SHSIIL--IFGTD-VLQ*TDLFFSHCRHNRNHKIFSFRKSIFNLSKQCLISRKLQI 154
+S+ SH+++L + G+ L+ FF+H + NH++ +F KS Q L I
Sbjct: 11 FSFISHAMMLTGLIGSSSFLEGDGGFFTHSGDDGNHQVLTFIKSSLQTVTQFTFW-SLDI 69
Query: 153 ILGIPIISQQTHKAVFRDINKLVVSAIHMWNITVVG*WNNIFK 25
IL + + Q + V ++ +LV ++ WN VV W IF+
Sbjct: 70 ILSVTVHVHQRQETVI-NVQQLVFVSLDNWNFHVVSRWRQIFQ 111
>gi|7677457|gb|AAF67173.1| (AF239659) HEX1 [Aspergillus nidulans]
Length = 221
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 2.6, P = 0.92
Identities = 22/66 (33%), Positives = 37/66 (56%), Frame = +1
Query: 85 YQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGFSEGKDLVVS-VMSAMGEEQ 261
Y+++DI E G + LT++G+ K + + L +IKD F EG+ V + V++ G E
Sbjct: 151 YRILDIQE-GTIVALTESGDVKSGIPVIPQGNLYQRIKDAFLEGRGSVRALVINDGGREL 209
Query: 262 ICSLKDI 282
+ K I
Sbjct: 210 VVDYKII 216
>gi|7511290|pir||T29969 hypothetical protein ZK682.3 - Caenorhabditis elegans
>gi|1086816|gb|AAA82416.1| (U41110) ZK682.3 gene product
[Caenorhabditis elegans]
Length = 80
Frame -3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 62 (21.8 bits), Expect = 3.6, P = 0.97
Identities = 19/62 (30%), Positives = 30/62 (48%), Frame = -3
Query: 351 KHKKKKRAISYSYSHSIILIFGTDVLQ*TDLFFSHCR-HNRNHKIFSFRKSIFNLSKQCL 175
K KKKKR + + H + I G VL + + H H I ++ K IF +++ L
Sbjct: 2 KMKKKKRKMFDVFEHVLNQIVGNGVLLLRRIVIDRSKQHKHFHLIMTY-KCIFVVAQHTL 60
Query: 174 ISR 166
+ R
Sbjct: 61 VDR 63
>gi|432500|gb|AAB21928.1| eukaryotic translation initiation factor 5A isoform
I, eIF-5AI [chickens, Peptide Partial, 79 aa, segment 1 of 2]
Length = 79
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 6.1, P = 1.0
Identities = 10/15 (66%), Positives = 13/15 (86%), Frame = +1
Query: 28 EDIVPSSHNCDVPHV 72
EDI PS+HN DVP++
Sbjct: 64 EDIXPSTHNMDVPNI 78
>gi|2197050|gb|AAB61278.1| (AF001033) putative 20kDa subunit of the V-ATPase
[Neurospora crassa]
Length = 176
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 6.3, P = 1.0
Identities = 18/64 (28%), Positives = 36/64 (56%), Frame = +1
Query: 85 YQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGFSEGKDLV-VSVMSAMGEEQ 261
Y+++D+ +DG + +T+ G+ K +L + +L +++ F G+ V V V+S G E
Sbjct: 106 YRVLDM-QDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREM 164
Query: 262 ICSLK 276
+K
Sbjct: 165 AVDMK 169
>gi|6016329|sp|O50089|IF5A_PYRHO INITIATION FACTOR 5A (IF-5A)
(HYPUSINE-CONTAINING PROTEIN) >gi|7443513|pir||G71010 probable
translation initiation factor eIF-5a - Pyrococcus horikoshii
>gi|3257804|dbj|BAA30487.1| (AP000006) 138aa long hypothetical
translation initiation factor eIF-5a [Pyrococcus horikoshii]
Length = 138
Frame 1 hits (HSPs): _____________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
__________________
Annotated Domains:
Entrez modified site: HYPUSINE (BY SIMILARITY). 37
PFAM eIF-5a: Eukaryotic initiation factor 5A 4..134
PRODOM PD002832: EFP(18) IF5A(13) IF51(5) 7..119
PROSITE IF5A_HYPUSINE: Eukaryotic initiation fac 35..42
__________________
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 7.8, P = 1.0
Identities = 22/84 (26%), Positives = 42/84 (50%), Frame = +1
Query: 34 IVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGFSE 213
+ P+S DVP +++ Q+I I+ D V ++ + T + ++P D + +I+D E
Sbjct: 59 VKPTSAEVDVPIIDKKTAQVIAITPDT-VQIM--DMETYETFEVPIDTGVADEIRDQLKE 115
Query: 214 GKDLVVSVMSAMGEEQICSLKDIG 285
G + V +G +I +K G
Sbjct: 116 G--INVEYWETLGRIKIMRIKGEG 137
>gi|7443516|pir||H75120 probable initiation factor 5a (aif5a) PAB1854 -
Pyrococcus abyssi (strain Orsay) >gi|5458192|emb|CAB49681.1|
(AJ248285) POSSIBLE INITIATION FACTOR 5A (aif5A) [Pyrococcus
abyssi]
Length = 138
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 7.8, P = 1.0
Identities = 22/84 (26%), Positives = 42/84 (50%), Frame = +1
Query: 34 IVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLAQIKDGFSE 213
+ P+S DVP +++ Q+I I+ D V ++ + T + ++P D + +I+D E
Sbjct: 59 VKPTSAEVDVPIIDKKTAQVIAITPDT-VQIM--DMETYEMFEVPIDTGVAEEIRDQLKE 115
Query: 214 GKDLVVSVMSAMGEEQICSLKDIG 285
G + V +G +I +K G
Sbjct: 116 G--INVEYWETLGRVKIMRIKGEG 137
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.384 0.175 0.788
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.163 0.604
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.331 0.145 0.427
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.333 0.138 0.429
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.355 0.155 0.571
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.341 0.148 0.476
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 160 160 10. 74 3 12 22 0.10 34
30 0.099 37
+2 0 160 159 10. 74 3 12 22 0.099 34
30 0.098 37
+1 0 160 159 10. 74 3 12 22 0.099 34
30 0.098 37
-1 0 160 160 10. 74 3 12 22 0.10 34
30 0.099 37
-2 0 160 159 10. 74 3 12 22 0.099 34
30 0.098 37
-3 0 160 159 10. 74 3 12 22 0.099 34
30 0.098 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 42
No. of states in DFA: 592 (58 KB)
Total size of DFA: 195 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 203.75u 1.05s 204.80t Elapsed: 00:01:04
Total cpu time: 203.81u 1.11s 204.92t Elapsed: 00:01:04
Start: Wed Feb 14 21:23:44 2001 End: Wed Feb 14 21:24:48 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000