BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  SSH4H07.SEQ(1>296)
        (271 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 5 Sequences     : less than 5 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1313 299 |===========================================================
   6310 1014 239 |===============================================
   3980  775 197 |=======================================
   2510  578 133 |==========================
   1580  445 139 |===========================
   1000  306  72 |==============
    631  234  71 |==============
    398  163  48 |=========
    251  115  36 |=======
    158   79  22 |====
    100   57   6 |=
   63.1   51  15 |===
   39.8   36   7 |=
   25.1   29   4 |:
   15.8   25   3 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 22  <<<<<<<<<<<<<<<<<
   10.0   22   1 |:
   6.31   21   0 |
   3.98   21   0 |
   2.51   21   0 |
   1.58   21   0 |
   1.00   21   0 |
   0.63   21   1 |:
   0.40   20   0 |
   0.25   20   0 |
   0.16   20   0 |
   0.10   20   0 |
  0.063   20   0 |
  0.040   20   0 |
  0.025   20   0 |
  0.016   20   1 |:
  0.010   19   0 |
 0.0063   19   0 |
 0.0040   19   0 |
 0.0025   19   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|124226|sp|P24922|IF52_NICPLINITIATION FACTOR 5A-2 ... +1   156  6.6e-18   2
gi|6752917|gb|AAF27938.1|AF225297_1(AF225297) transla... +1   149  2.8e-17   2
gi|3024021|sp|P56336|IF54_SOLTUINITIATION FACTOR 5A-4... +1   144  1.9e-16   2
gi|6689385|emb|CAB65463.1|(AJ238624) translation init... +1   152  2.4e-16   2
gi|3024022|sp|P56337|IF55_SOLTUINITIATION FACTOR 5A-5... +1   147  3.0e-16   2
gi|124230|sp|P26564|IF5A_MEDSAINITIATION FACTOR 5A (E... +1   147  3.9e-16   2
gi|124224|sp|P24921|IF51_NICPLINITIATION FACTOR 5A-1 ... +1   146  3.9e-16   2
gi|100277|pir||S21058translation initiation factor eI... +1   146  3.9e-16   2
gi|3789948|gb|AAC67555.1|(AF094773) translation initi... +1   142  7.9e-16   2
gi|3024018|sp|P56332|IF5A_MAIZEINITIATION FACTOR 5A (... +1   133  6.9e-15   2
gi|3024019|sp|P56333|IF51_SOLTUINITIATION FACTOR 5A (... +1   130  6.9e-15   2
gi|7705083|gb|AAF67762.1|(AC018364) putative eukaryot... +1   136  8.7e-15   2
gi|3024020|sp|P56335|IF53_SOLTUINITIATION FACTOR 5A-3... +1   130  8.7e-15   2
gi|5080771|gb|AAD39281.1|AC007576_4(AC007576) initiat... +1   129  1.5e-13   2
gi|7492108|pir||T40248initiation factor eif-5a - fiss... +1    83  9.1e-06   2
gi|3024014|sp|P56289|IF5A_SCHPOINITIATION FACTOR EIF-... +1    81  1.7e-05   2
gi|7387802|sp|O94083|IF5A_CANALINITIATION FACTOR 5A (... +1    75  0.00038   2
gi|6322507ref|NP_012581.1| anaerobically expressed fo... +1    71  0.0018    2
gi|6320801ref|NP_010880.1| Translation initiation fac... +1    71  0.0018    2
gi|2696656|dbj|BAA24001.1|(AB009604) eIF5A [Schizosac... +1    81  0.016     1
gi|2118326|pir||S70744UDPglucose 4-epimerase (EC 5.1.... -3    74  0.46      1
gi|134846|sp|P22532|SP23_HUMANSMALL PROLINE-RICH PROT... -1    55  0.9999    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|124226              |__________                                        
gi|6752917             |__________                                        
gi|3024021             |__________                                        
gi|6689385             |__________                                        
gi|3024022             |__________                                        
gi|124230              |__________                                        
gi|124224              |__________                                        
gi|100277              |__________                                        
gi|3789948             |__________                                        
gi|3024018             |__________                                        
gi|3024019             |___________                                       
gi|7705083             |__________                                        
gi|3024020             |__________                                        
gi|5080771             |__________                                        
gi|7492108             |_______                                           
gi|3024014             |_______                                           
gi|7387802             |_______                                           
gi|6322507             |_______                                           
gi|6320801             |_______                                           
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 91
                       0         20         40         60         80


Locus_ID                Frame 1 Hits
gi|124226              |         __________________                       
gi|6752917             |         __________________                       
gi|3024021             |         __________________                       
gi|6689385             |         __________________                       
gi|3024022             |         __________________                       
gi|124230              |         __________________                       
gi|124224              |         __________________                       
gi|100277              |         __________________                       
gi|3789948             |         __________________                       
gi|3024018             |         __________________                       
gi|3024019             |         __________________                       
gi|7705083             |         __________________                       
gi|3024020             |        ___________________                       
gi|5080771             |         __________________                       
gi|7492108             |          _______________                         
gi|3024014             |          _______________                         
gi|7387802             |           ________________                       
gi|6322507             |           ______________                         
gi|6320801             |           ______________                         
gi|2696656             |          _______________                         
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 91
                       0         20         40         60         80


Locus_ID                Frame -1 Hits
gi|134846              |    ______________________                        
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 91
                       0         20         40         60         80


Locus_ID                Frame -3 Hits
gi|2118326             |                                                  
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 91
                       0         20         40         60         80


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|124226|sp|P24922|IF52_NICPL  INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D)
            >gi|100278|pir||S21059 translation initiation factor eIF-5A.2 -
            curled-leaved tobacco >gi|19702|emb|CAA45104.1| (X63542) eukaryotic
            initiation  factor 5A (2) [Nicotiana plumbaginifolia]
            Length = 159

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                123..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 156 (54.9 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
 Identities = 30/32 (93%), Positives = 32/32 (100%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGFAEGKDLVVSVMS+MGEEQICALKDIGPK
Sbjct:   128 KDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

 Score = 84 (29.6 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
 Identities = 16/18 (88%), Positives = 18/18 (100%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTD+NLL+QIK
Sbjct:   111 TKDDLRLPTDDNLLTQIK 128


 >gi|6752917|gb|AAF27938.1|AF225297_1  (AF225297) translation initiation factor
            5A [Euphorbia esula]
            Length = 156

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 149 (52.5 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 28/32 (87%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGF +GKDLVV+VMSSMGEEQICALKDIGPK
Sbjct:   125 KDGFGDGKDLVVTVMSSMGEEQICALKDIGPK 156

 Score = 85 (29.9 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 17/18 (94%), Positives = 18/18 (100%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTDE+LLSQIK
Sbjct:   108 TKDDLRLPTDESLLSQIK 125


 >gi|3024021|sp|P56336|IF54_SOLTU  INITIATION FACTOR 5A-4 (EIF-5A) (EIF-4D)
            >gi|2225883|dbj|BAA20878.1| (AB004825) eukaryotic initiation factor
            5A4 [Solanum tuberosum]
            Length = 159

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                122..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 144 (50.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 29/32 (90%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGFAEGKDLVVSVMS+MGEEQI ALKDIGPK
Sbjct:   128 KDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

 Score = 82 (28.9 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 16/18 (88%), Positives = 18/18 (100%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTD++LLSQIK
Sbjct:   111 TKDDLRLPTDDSLLSQIK 128


 >gi|6689385|emb|CAB65463.1|  (AJ238624) translation initiation factor 5A
            precursor protein (eIF-5A) [Senecio vernalis]
            Length = 159

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 152 (53.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
 Identities = 29/32 (90%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGF EGKDLVVSVMS+MGEEQICALKDIGPK
Sbjct:   128 KDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159

 Score = 73 (25.7 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
 Identities = 14/18 (77%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDL+LPTD+ LL+QIK
Sbjct:   111 TKDDLKLPTDDALLTQIK 128


 >gi|3024022|sp|P56337|IF55_SOLTU  INITIATION FACTOR 5A-5 (EIF-5A) (EIF-4D)
            >gi|2225885|dbj|BAA20879.1| (AB004826) eukaryotic initiation factor
            5A5 [Solanum tuberosum]
            Length = 159

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                122..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 147 (51.7 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
 Identities = 27/32 (84%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGFAEGKDLV+SVMS+MGEEQIC +KDIGPK
Sbjct:   128 KDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

 Score = 77 (27.1 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
 Identities = 14/18 (77%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTD+ LL+Q+K
Sbjct:   111 TKDDLRLPTDDTLLAQVK 128


 >gi|124230|sp|P26564|IF5A_MEDSA  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|72894|pir||FIAAA translation initiation factor eIF-5A - alfalfa
            >gi|19601|emb|CAA42065.1| (X59441) eukaryotic translation
            initiation factor 4D [Medicago sativa]
            Length = 161

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 161
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..155
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..118
   PRODOM               PD003614: IF51(2) IF5A(2)                123..159
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 147 (51.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 29/32 (90%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGFAEGKDLVVSVMS+MGEEQICALKDIG K
Sbjct:   129 KDGFAEGKDLVVSVMSAMGEEQICALKDIGGK 160

 Score = 76 (26.8 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 14/18 (77%), Positives = 18/18 (100%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDL+LPTD++LL+QIK
Sbjct:   112 TKDDLKLPTDDSLLTQIK 129


 >gi|124224|sp|P24921|IF51_NICPL  INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D)
            >gi|100345|pir||S21060 translation initiation factor eIF-5A -
            common tobacco >gi|19887|emb|CAA45105.1| (X63543) eukaryotic
            initiatin factor 5A (3) [Nicotiana tabacum]
            Length = 159

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   DOMO                 DM01715: EUKARYOTICINITIATIONFACTOR5AHYP 28..156
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                123..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 146 (51.4 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 26/32 (81%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGFAEGKDLV+SVMS+MGEEQIC +KD+GPK
Sbjct:   128 KDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

 Score = 77 (27.1 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 15/18 (83%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTD+NLL+ IK
Sbjct:   111 TKDDLRLPTDDNLLALIK 128


 >gi|100277|pir||S21058  translation initiation factor eIF-5A.1 - curled-leaved
            tobacco (fragment) >gi|829282|emb|CAA45103.1| (X63541) eukaryotic
            initiation factor 5A (1) [Nicotiana plumbaginifolia]
            Length = 145

Frame  3 hits (HSPs):                                    ______           
Frame  1 hits (HSPs):                                         ____________
Annotated Domains:                  ___                                   
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   Entrez               modified site: N6-(4-amino-2-hydroxybuty 38
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 36..43
__________________


  Plus Strand HSPs:

 Score = 146 (51.4 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 26/32 (81%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             +DGFAEGKDLV+SVMS+MGEEQIC +KD+GPK
Sbjct:   114 KDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 145

 Score = 77 (27.1 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
 Identities = 15/18 (83%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTD+NLL+ IK
Sbjct:    97 TKDDLRLPTDDNLLALIK 114


 >gi|3789948|gb|AAC67555.1|  (AF094773) translation initiation factor 5A [Oryza
            sativa]
            Length = 160

Frame  3 hits (HSPs):                                     _______         
Frame  1 hits (HSPs):                                           __________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 142 (50.0 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
 Identities = 27/32 (84%), Positives = 30/32 (93%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             + GF EGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   129 KTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160

 Score = 78 (27.5 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
 Identities = 15/18 (83%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTD++LL QIK
Sbjct:   112 TKDDLRLPTDDSLLGQIK 129


 >gi|3024018|sp|P56332|IF5A_MAIZE  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|7443512|pir||T01355 translation initiation factor eIF-5A -
            maize >gi|1546919|emb|CAA69225.1| (Y07920) translation initiation
            factor 5A [Zea mays] >gi|2668738|gb|AAB88614.1| (AF034943)
            translation initiation factor 5A [Zea mays]
            Length = 160

Frame  3 hits (HSPs):                                     _______         
Frame  1 hits (HSPs):                                           __________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 28..81
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 53
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  13..155
   PRODOM               PD015048: IF51(2) IF5A(2)                1..23
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       25..121
   PRODOM               PD003614: IF51(2) IF5A(2)                123..159
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 51..58
__________________


  Plus Strand HSPs:

 Score = 133 (46.8 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 24/32 (75%), Positives = 29/32 (90%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             ++GF  GKDLVV+V S+MGEEQICALKD+GPK
Sbjct:   129 KEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160

 Score = 78 (27.5 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 15/18 (83%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTDE L++QIK
Sbjct:   112 TKDDLRLPTDETLVAQIK 129


 >gi|3024019|sp|P56333|IF51_SOLTU  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|2225879|dbj|BAA20876.1| (AB004823) eukaryotic initiation factor
            5A2 [Solanum tuberosum] >gi|2225887|dbj|BAA20880.1| (AB004827)
            eukaryotic initiation factor 5A1 [Solanum tuberosum]
            Length = 160

Frame  3 hits (HSPs):                                     _______         
Frame  1 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..117
   PRODOM               PD003614: IF51(2) IF5A(2)                123..158
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 130 (45.8 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 25/32 (78%), Positives = 29/32 (90%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             + GF EGKDLV+SVMS+MGEEQICA+KDIG K
Sbjct:   128 KGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159

 Score = 81 (28.5 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 15/19 (78%), Positives = 18/19 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIKG 59
             TKDDLRLPTD+ LL+Q+KG
Sbjct:   111 TKDDLRLPTDDALLNQVKG 129


 >gi|7705083|gb|AAF67762.1|  (AC018364) putative eukaryotic initiation factor 5A
            (eIF-5A) [Arabidopsis thaliana]
            Length = 158

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 136 (47.9 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
 Identities = 24/32 (75%), Positives = 31/32 (96%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             ++GF EGKD+VVSVMS+MGEEQ+CALK++GPK
Sbjct:   127 KNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

 Score = 74 (26.0 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
 Identities = 14/18 (77%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDL+LPTDE LL+Q+K
Sbjct:   110 TKDDLKLPTDEALLTQLK 127


 >gi|3024020|sp|P56335|IF53_SOLTU  INITIATION FACTOR 5A-3 (EIF-5A) (EIF-4D)
            >gi|7443511|pir||T07133 translation initiation factor eIF-5A3 -
            potato >gi|2225881|dbj|BAA20877.1| (AB004824) eukaryotic initiation
            factor 5A3 [Solanum tuberosum]
            Length = 160

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                         ____________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..154
   PRODOM               PD015048: IF51(2) IF5A(2)                1..22
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       24..141
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 130 (45.8 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
 Identities = 26/35 (74%), Positives = 31/35 (88%), Frame = +1

Query:    46 RRSRDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             ++ +DGF EGKDLVVSVMS+MGEEQI A+KDIG K
Sbjct:   125 KQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159

 Score = 80 (28.2 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
 Identities = 15/18 (83%), Positives = 17/18 (94%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDLRLPTDE+LL Q+K
Sbjct:   111 TKDDLRLPTDESLLKQVK 128


 >gi|5080771|gb|AAD39281.1|AC007576_4  (AC007576) initiation factor 5A-4
            [Arabidopsis thaliana]
            Length = 158

Frame  3 hits (HSPs):                                     ______          
Frame  1 hits (HSPs):                                          ___________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 129 (45.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 26/32 (81%), Positives = 29/32 (90%), Frame = +1

Query:    55 RDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             + GF +GKDLVVSVMS+MGEEQI ALKDIGPK
Sbjct:   127 KSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

 Score = 69 (24.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 13/18 (72%), Positives = 15/18 (83%), Frame = +3

Query:     3 TKDDLRLPTDENLLSQIK 56
             TKDDL+LP D+ LL QIK
Sbjct:   110 TKDDLKLPNDDTLLQQIK 127


 >gi|7492108|pir||T40248  initiation factor eif-5a - fission yeast
            (Schizosaccharomyces pombe) >gi|6048299|emb|CAB58162.1| (AL121815)
            initiation factor eif-5a [Schizosaccharomyces pombe]
            Length = 157

Frame  3 hits (HSPs):                                     ____            
Frame  1 hits (HSPs):                                           _________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
 Identities = 15/27 (55%), Positives = 22/27 (81%), Frame = +1

Query:    58 DGFAEGKDLVVSVMSSMGEEQICALKD 138
             +GF EGKDL+++V+S+MGEE   A +D
Sbjct:   127 EGFEEGKDLIITVVSAMGEEIALACRD 153

 Score = 42 (14.8 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
 Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +3

Query:     3 TKDDLRLPTDE 35
             TKDD+RLP  E
Sbjct:   110 TKDDVRLPEGE 120


 >gi|3024014|sp|P56289|IF5A_SCHPO  INITIATION FACTOR EIF-5A
            >gi|7492107|pir||T38429 initiation factor eif-5a - fission yeast
            (Schizosaccharomyces pombe) >gi|2398819|emb|CAB16195.1| (Z99126)
            initiation factor eif-5a. [Schizosaccharomyces pombe]
            Length = 157

Frame  3 hits (HSPs):                                     ____            
Frame  1 hits (HSPs):                                           _________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   BLOCKS               BL00302: Eukaryotic initiation factor 5A 27..80
   Entrez               modified site: HYPUSINE (BY SIMILARITY). 52
   PFAM                 eIF-5a: Eukaryotic initiation factor 5A  12..152
   PRODOM               PD056987: IF5A_SCHPO                     1..25
   PRODOM               PD002832: EFP(18) IF5A(13) IF51(5)       27..127
   PRODOM               PD192718: IF5A_SCHPO                     129..156
   PROSITE              IF5A_HYPUSINE: Eukaryotic initiation fac 50..57
__________________


  Plus Strand HSPs:

 Score = 81 (28.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 14/27 (51%), Positives = 22/27 (81%), Frame = +1

Query:    58 DGFAEGKDLVVSVMSSMGEEQICALKD 138
             +GF EG+DL+++V+S+MGEE   A +D
Sbjct:   127 EGFDEGRDLIITVVSAMGEETALACRD 153

 Score = 42 (14.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +3

Query:     3 TKDDLRLPTDE 35
             TKDD+RLP  E
Sbjct:   110 TKDDVRLPEGE 120


 >gi|7387802|sp|O94083|IF5A_CANAL  INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
            >gi|4204352|gb|AAD10697.1| (U07366) eIF-5A [Candida albicans]
            Length = 157

Frame  3 hits (HSPs):                                     ____            
Frame  1 hits (HSPs):                                           _________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 15/29 (51%), Positives = 22/29 (75%), Frame = +1

Query:    64 FAEGKDLVVSVMSSMGEEQICALKDIGPK 150
             F EGKDL+V+++S+MGEE   + K+  PK
Sbjct:   127 FDEGKDLIVTIISAMGEEAAISYKE-APK 154

 Score = 36 (12.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = +3

Query:     3 TKDDLRLPTDE 35
             TKDD+++P  E
Sbjct:   108 TKDDVKVPEGE 118


 >gi|6322507  ref|NP_012581.1| anaerobically expressed form of translation
            initiation factor eIF-5A; Anb1p >gi|124225|sp|P19211|IF51_YEAST
            INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D) (HYPUSINE CONTAINING
            PROTEIN HP1) >gi|72893|pir||FIBYA2 translation initiation factor
            eIF-5A.2 - yeast (Saccharomyces cerevisiae)
            >gi|3804|emb|CAA39692.1| (X56235) hypusine containing protein  HP1
            [Saccharomyces cerevisiae] >gi|171062|gb|AAA34425.1| (J05455)
            protein synthesis initiation factor (eIF-4D) [Saccharomyces
            cerevisiae] >gi|172982|gb|AAA35156.1| (M63542) initiation factor 5A
            [Saccharomyces cerevisiae] >gi|1015705|emb|CAA89575.1| (Z49547) ORF
            YJR047c [Saccharomyces cerevisiae] >gi|1197076|gb|AAA88750.1|
            (L36344) ORF; putative [Saccharomyces cerevisiae]
            Length = 157

Frame  3 hits (HSPs):                                     ____            
Frame  1 hits (HSPs):                                           _________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 0.0018, Sum P(2) = 0.0018
 Identities = 13/25 (52%), Positives = 20/25 (80%), Frame = +1

Query:    64 FAEGKDLVVSVMSSMGEEQICALKD 138
             F EGKDL+V+++S+MGEE   + K+
Sbjct:   128 FDEGKDLMVTIISAMGEEAAISFKE 152

 Score = 34 (12.0 bits), Expect = 0.0018, Sum P(2) = 0.0018
 Identities = 6/11 (54%), Positives = 8/11 (72%), Frame = +3

Query:     3 TKDDLRLPTDE 35
             TKDD++ P  E
Sbjct:   109 TKDDVKAPEGE 119


 >gi|6320801  ref|NP_010880.1| Translation initiation factor eIF-5A; Hyp2p
            >gi|124227|sp|P23301|IF52_YEAST INITIATION FACTOR 5A-2 (EIF-5A)
            (EIF-4D) (HYPUSINE CONTAINING PROTEIN HP2) >gi|72892|pir||FIBYA1
            translation initiation factor eIF-5A.1 - yeast (Saccharomyces
            cerevisiae) >gi|3806|emb|CAA39693.1| (X56236) hypusine containing
            protein  HP2 [Saccharomyces cerevisiae] >gi|172980|gb|AAA35155.1|
            (M63541) initiation factor 5A [Saccharomyces cerevisiae]
            >gi|603645|gb|AAB65008.1| (U18779) Hyp2p: translation initiation
            factor eIF-5A [Saccharomyces cerevisiae]
            >gi|1181617|dbj|BAA11826.1| (D83166) eukaryotic translation
            initiation factor 5A precursor [Saccharomyces cerevisiae]
            Length = 157

Frame  3 hits (HSPs):                                     ____            
Frame  1 hits (HSPs):                                           _________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 0.0018, Sum P(2) = 0.0018
 Identities = 13/25 (52%), Positives = 20/25 (80%), Frame = +1

Query:    64 FAEGKDLVVSVMSSMGEEQICALKD 138
             F EGKDL+V+++S+MGEE   + K+
Sbjct:   128 FDEGKDLMVTIISAMGEEAAISFKE 152

 Score = 34 (12.0 bits), Expect = 0.0018, Sum P(2) = 0.0018
 Identities = 6/11 (54%), Positives = 8/11 (72%), Frame = +3

Query:     3 TKDDLRLPTDE 35
             TKDD++ P  E
Sbjct:   109 TKDDVKAPEGE 119


 >gi|2696656|dbj|BAA24001.1|  (AB009604) eIF5A [Schizosaccharomyces pombe]
            Length = 33

Frame  1 hits (HSPs):      _________________________________________      
                        __________________________________________________
Database sequence:     |                            |                     | 33
                       0                           20

  Plus Strand HSPs:

 Score = 81 (28.5 bits), Expect = 0.016, P = 0.016
 Identities = 14/27 (51%), Positives = 22/27 (81%), Frame = +1

Query:    58 DGFAEGKDLVVSVMSSMGEEQICALKD 138
             +GF EG+DL+++V+S+MGEE   A +D
Sbjct:     3 EGFDEGRDLIITVVSAMGEETALACRD 29


 >gi|2118326|pir||S70744  UDPglucose 4-epimerase (EC 5.1.3.2) - Yersinia
            enterocolitica >gi|633700|emb|CAA87706.1| (Z47767) Uridine
            Diphosphate Glucose Epimerase [Yersinia enterocolitica]
            Length = 336

Frame -3 hits (HSPs):                        ___________                  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 336
                       0                    150                   300
__________________

Annotated Domains:
   Entrez               domain: UDPglucose 4-epimerase homology  3..334
__________________


  Minus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 0.61, P = 0.46
 Identities = 26/79 (32%), Positives = 36/79 (45%), Frame = -3

Query:   248 TNPHKSEKIIINTIYHLSFNFCFPDIQLTQLYYLGPMSLRAQICSSPMEDITDTTRSLPS 69
             TNP+ S K++I  I    F F +PD  +  L Y  P+   A I     ED        P+
Sbjct:   146 TNPYGSSKVMIEQILK-DFAFAYPDFSIRALRYFNPVG--AHISGLIGED--------PN 194

Query:    68 ANPS--LDLRKQIFIGWKPKV 12
               P+  L    Q+ IG  PK+
Sbjct:   195 GKPNNLLPFITQVAIGKLPKL 215


 >gi|134846|sp|P22532|SP23_HUMAN  SMALL PROLINE-RICH PROTEIN II (SPR-II) (CLONE
            174N) >gi|338425|gb|AAA36640.1| (M21302) small proline rich protein
            [Homo sapiens]
            Length = 72

Frame -1 hits (HSPs):                  ________________________           
Annotated Domains:        _______________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 72
                       0            20            40           60
__________________

Annotated Domains:
   Entrez               Domain: 4 X 9 AA APPROXIMATE TANDEM REPE 20..56
   Entrez               Repetitive region: 1.                    20..28
   Entrez               Repetitive region: 2.                    29..37
   Entrez               Repetitive region: 3.                    38..46
   Entrez               Repetitive region: 4.                    47..56
   PRINTS               PRORICH1: Small proline rich motif I - 6 4..16
   PRINTS               PRORICH2: Small proline rich motif II -  18..27
   PRINTS               PRORICH3: Small proline rich motif III - 30..36
   PRINTS               PRORICH4: Small proline rich motif IV -  39..47
   PRINTS               PRORICH5: Small proline rich motif V - 6 57..66
   PRODOM               PD025771: SP22(1) SP23(1)                53..71
__________________


  Minus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 8.9, P = 1.0
 Identities = 12/38 (31%), Positives = 16/38 (42%), Frame = -1

Query:   139 CP*GHKSAPPPWKT*QTQPDLCPQQIHPLICESRFSSV 26
             CP   +  PPP       P  CPQ   P  C+ ++  V
Sbjct:    23 CP---EPCPPPKSPEPCPPSKCPQPCPPQQCQQKYPPV 57


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.94

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.338   0.151   0.569  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.367   0.166   0.631  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.367   0.169   0.567  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.362   0.159   0.611  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.350   0.155   0.501  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.330   0.143   0.460  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       89        89       10.  63 3  12 22  0.091   32
                                                    28  0.11    33
   +2      0       90        89       10.  63 3  12 22  0.091   32
                                                    28  0.11    33
   +1      0       90        89       10.  63 3  12 22  0.091   32
                                                    28  0.11    33
   -1      0       90        90       10.  63 3  12 22  0.092   32
                                                    28  0.11    33
   -2      0       90        89       10.  63 3  12 22  0.091   32
                                                    28  0.11    33
   -3      0       89        89       10.  63 3  12 22  0.091   32
                                                    28  0.11    33


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  22
  No. of states in DFA:  577 (57 KB)
  Total size of DFA:  135 KB (192 KB)
  Time to generate neighborhood:  0.02u 0.00s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  124.91u 1.14s 126.05t  Elapsed: 00:01:17
  Total cpu time:  124.95u 1.20s 126.15t  Elapsed: 00:01:17
  Start:  Wed Feb 14 19:59:31 2001   End:  Wed Feb 14 20:00:48 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000