BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SSA_1635
(688 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|125718440|ref|YP_001035573.1| hypothetical protein SSA_1... 1301 0.0
gi|125717538|ref|YP_001034671.1| Fibril-like structure subu... 327 1e-87
gi|157075533|gb|ABV10216.1| LPXTG cell wall surface protein... 315 7e-84
gi|125717852|ref|YP_001034985.1| Collagen-binding surface p... 67 4e-09
>gi|125718440|ref|YP_001035573.1| hypothetical protein SSA_1635 [Streptococcus sanguinis SK36]
gi|125498357|gb|ABN45023.1| Hypothetical protein SSA_1635 [Streptococcus sanguinis SK36]
Length = 689
Score = 1301 bits (3366), Expect = 0.0, Method: Composition-based stats.
Identities = 688/688 (100%), Positives = 688/688 (100%)
Query: 1 EIIMKYLMKKYVKSFLFGLTFIFVLFSSAVYAVTELTESTNLSTLDIYQFTLTQDNMEVL 60
EIIMKYLMKKYVKSFLFGLTFIFVLFSSAVYAVTELTESTNLSTLDIYQFTLTQDNMEVL
Sbjct: 2 EIIMKYLMKKYVKSFLFGLTFIFVLFSSAVYAVTELTESTNLSTLDIYQFTLTQDNMEVL 61
Query: 61 SQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDVYVT 120
SQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDVYVT
Sbjct: 62 SQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDVYVT 121
Query: 121 FHSIDTYLVQRNTDYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGSFAL 180
FHSIDTYLVQRNTDYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGSFAL
Sbjct: 122 FHSIDTYLVQRNTDYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGSFAL 181
Query: 181 DTNVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTSYAL 240
DTNVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTSYAL
Sbjct: 182 DTNVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTSYAL 241
Query: 241 NETLVDNKTTWRPTRSTQGDSDEHNVSGFAVRSETNAVRFEFTTTAGSGGLFGFYTEAPK 300
NETLVDNKTTWRPTRSTQGDSDEHNVSGFAVRSETNAVRFEFTTTAGSGGLFGFYTEAPK
Sbjct: 242 NETLVDNKTTWRPTRSTQGDSDEHNVSGFAVRSETNAVRFEFTTTAGSGGLFGFYTEAPK 301
Query: 301 APVKQASKDKLPALAGESLNYTAKFTMPTPGKDVIGSLSSMQMIETLDNRLDFQSLTLQL 360
APVKQASKDKLPALAGESLNYTAKFTMPTPGKDVIGSLSSMQMIETLDNRLDFQSLTLQL
Sbjct: 302 APVKQASKDKLPALAGESLNYTAKFTMPTPGKDVIGSLSSMQMIETLDNRLDFQSLTLQL 361
Query: 361 DGRTLTQGADYTLARDGQKVTVAINAKHLTSSNSGKEFTIIYKTKTNDNILQNRAPIENR 420
DGRTLTQGADYTLARDGQKVTVAINAKHLTSSNSGKEFTIIYKTKTNDNILQNRAPIENR
Sbjct: 362 DGRTLTQGADYTLARDGQKVTVAINAKHLTSSNSGKEFTIIYKTKTNDNILQNRAPIENR 421
Query: 421 VAQEIDNIPVSSEIVTTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPD 480
VAQEIDNIPVSSEIVTTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPD
Sbjct: 422 VAQEIDNIPVSSEIVTTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPD 481
Query: 481 SPKGNKRLVSTSEGNWVFQNYDKESDTIQNQDVLFTGIWNFQEYEKPKKEVFNKNNENID 540
SPKGNKRLVSTSEGNWVFQNYDKESDTIQNQDVLFTGIWNFQEYEKPKKEVFNKNNENID
Sbjct: 482 SPKGNKRLVSTSEGNWVFQNYDKESDTIQNQDVLFTGIWNFQEYEKPKKEVFNKNNENID 541
Query: 541 NQEVKANDVLTYKITYKNTSDRELDVTITDELPKHTDYVNGSTVYDDFAQNRLTWRRRVA 600
NQEVKANDVLTYKITYKNTSDRELDVTITDELPKHTDYVNGSTVYDDFAQNRLTWRRRVA
Sbjct: 542 NQEVKANDVLTYKITYKNTSDRELDVTITDELPKHTDYVNGSTVYDDFAQNRLTWRRRVA 601
Query: 601 PEETVEVSFKVRVNQDVDGHILQSSAQVSTDLFTLETNRTSNPTAIKKYVLPETGGNGTL 660
PEETVEVSFKVRVNQDVDGHILQSSAQVSTDLFTLETNRTSNPTAIKKYVLPETGGNGTL
Sbjct: 602 PEETVEVSFKVRVNQDVDGHILQSSAQVSTDLFTLETNRTSNPTAIKKYVLPETGGNGTL 661
Query: 661 LYLWGGSVITLGSAIWLIVRNKLYRKFQ 688
LYLWGGSVITLGSAIWLIVRNKLYRKFQ
Sbjct: 662 LYLWGGSVITLGSAIWLIVRNKLYRKFQ 689
>gi|125717538|ref|YP_001034671.1| Fibril-like structure subunit FibA, putative [Streptococcus
sanguinis SK36]
gi|125497455|gb|ABN44121.1| Fibril-like structure subunit FibA, putative [Streptococcus
sanguinis SK36]
Length = 1273
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 199/524 (37%), Positives = 311/524 (59%), Gaps = 27/524 (5%)
Query: 16 LFGLTF-IFVLFSSAVYAVTELTESTNLSTLDIYQFTLTQDNMEVLSQGASVERDFIPAN 74
LF + F IF+L + A+ EL + T+LS L+I++F L +N+ VL + ++E+ + N
Sbjct: 26 LFVVLFSIFLLPIQTLSALEELKDGTDLSKLNIHKFDLNVNNVSVLYKSEAIEQVHL-TN 84
Query: 75 GNWK--------ESTVFSLRVDKNQ-TQQTFNSPIQLRFNNAGIVNGKAVDVYVTFHSID 125
N++ E F+++VDK+Q Q FN P+ L+F+N G GK VD Y+TF+ +
Sbjct: 85 PNYEYLGAVYPGEMENFTIKVDKSQKADQVFNKPLSLKFSNVGTAYGKQVDAYLTFNKVT 144
Query: 126 TYLVQRNT---DYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHD--MHGSFAL 180
+ + +T D K V F ++ E W + +I + P+ H+ M+ +F +
Sbjct: 145 LHYLSSSTAEAQMNDAQKNAVEFFSISELWERSAFEIGNI---PYVDAAHNNIMNKAFWV 201
Query: 181 DTNVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTSYAL 240
+ +VTAELRY DG+ TDLK+VM P+DIDVV + G +E+F I D A++K + N + AL
Sbjct: 202 EADVTAELRYADGSDTDLKLVMKPTDIDVV-DGFGLKESFYINDYKNAVDKRLMNNANAL 260
Query: 241 NETLVDNKTTWRPTRSTQGDSDEHNVSGFAVRSETNAVRFEFTTTAGSGGLFGFYTEA-- 298
N+T +T W T ST G ++E+N+SG AVRS N + F + +T +FG Y E
Sbjct: 261 NQTDQSGRTIWEATTSTSGAANENNISGLAVRSADNTLNFGYLSTEACSAVFGLYIEKVD 320
Query: 299 PKAPVKQASKDKLPALAGESLNYTAKFTMPTPGKDVIGSLSSMQMIETLDNRLDFQSLTL 358
PK PV + K+PA G+ + Y F +P PGKD++ + ++++M ET + RLD++ L +
Sbjct: 321 PK-PVLEVDPVKIPAKEGQEVTYKGTFKIPVPGKDILATPTTIEMTETFNERLDYKELKV 379
Query: 359 QLDGRTLTQGADYTLARDGQKVTVAINAKHLTSSNSGKEFTIIYKTKTNDNILQN-RAPI 417
+ G L +G DYT+ + GQ VTV + +++ +NS ++ I YKT TN + + A I
Sbjct: 380 EAGGNALQEGRDYTIEKKGQTVTVKMTPEYV-KANSSQDIVITYKTATNQKVAEKGAATI 438
Query: 418 ENRVAQEIDNIPVSSEIVTTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTV 477
EN V ++DN+ S VTT++LY+K ++F SGT K LPQE+ +L P+ + NLENG+
Sbjct: 439 ENTVTLKVDNLSAPSNQVTTDLLYEKKHEFVSGTAGKELPQEIKDLTPETEKNLENGTKT 498
Query: 478 TPDSPKGNKRLVSTSEGNWVFQNYDKESDTIQNQDVLFTGIWNF 521
TP P K V T++G W+F++YDK +TI D F G W+F
Sbjct: 499 TPTQPA--KTEVQTADGTWIFKSYDKAEETINGADAHFVGTWDF 540
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 436 TTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGN 495
T N YK +++F SGT K LPQEV LLP D+ +L +G+ TP P K V TS+G
Sbjct: 793 TPNPTYKATHEFVSGTAGKELPQEVKALLPSDKSDLADGTKTTPTQPV--KTEVETSDGT 850
Query: 496 WVFQNYDKESDTIQNQDVLFTGIWNF 521
W+F++YDK +TI D F G W++
Sbjct: 851 WIFKSYDKAEETINGADAHFVGTWDY 876
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV LLP D+ +L +G+ TP P K V TS+G W FQ+
Sbjct: 970 YKSTHEFVSGTAGKELPQEVKALLPSDKSDLADGTKTTPTQPV--KTEVETSDGTWSFQS 1027
Query: 501 YDKESDTIQNQDVLFTGIWNFQEYEKP 527
YDK TI D F G W F P
Sbjct: 1028 YDKNEATINGADAKFVGTWTFVAKSSP 1054
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 30/136 (22%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQ V +LLP D+ +L +G+ TP P +K V T++G W F++
Sbjct: 546 YKATHEFVSGTAGKELPQAVKDLLPADKPDLADGTKATPTQP--SKTEVKTTDGTWTFKS 603
Query: 501 YDKESDTIQNQDVLFTGIWNFQEYEKPKKEVFNKNNENIDNQEVKANDVLTYKITYK--- 557
YDK +TI D F G W+F LTYK T++
Sbjct: 604 YDKAEETINGADAHFVGTWDF-------------------------TPALTYKATHEFVS 638
Query: 558 NTSDRELDVTITDELP 573
TSD+EL + LP
Sbjct: 639 GTSDKELPQAVKSLLP 654
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV LLP D+ +L +G+ TP P K V TS+G+W FQ+
Sbjct: 882 YKATHEFVSGTAGKELPQEVKALLPTDKSDLADGTKTTPTQPV--KTEVETSDGSWSFQS 939
Query: 501 YDKESDTIQNQDVLFTGIWNFQEYEKP 527
YDK I D F G W F P
Sbjct: 940 YDKNEAIINEADAKFVGTWTFVAKPSP 966
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQ V +LLP D+ +L +G+ TP P K V T++G W F++
Sbjct: 714 YKATHEFVSGTAGKELPQAVKDLLPADKPDLADGTKATPTQPA--KTEVQTADGTWTFKS 771
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK +TI D F G W+F
Sbjct: 772 YDKAEETINGTDAHFVGTWDF 792
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 436 TTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGN 495
T + YK +++F SGT DK LPQ V +LLP D+ +L +G+ T P K V T++G
Sbjct: 625 TPALTYKATHEFVSGTSDKELPQAVKSLLPSDKPDLADGTRATSTQPV--KTEVKTADGT 682
Query: 496 WVFQNYDKESDTIQNQDVLFTGIWNF 521
W F++YDK +TI D F G W+F
Sbjct: 683 WTFKSYDKAEETINGADAHFVGTWDF 708
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SG+ K LPQEV +LLP D+ +L +G+ P K V T++G W F++
Sbjct: 1058 YKVTHEFVSGSASKELPQEVKSLLPADKPDLADGTKAIPTQLV--KTEVKTADGTWTFKS 1115
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK +TI D F G W F
Sbjct: 1116 YDKNEETINGADAHFVGTWTF 1136
>gi|157075533|gb|ABV10216.1| LPXTG cell wall surface protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 1643
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 195/517 (37%), Positives = 303/517 (58%), Gaps = 25/517 (4%)
Query: 22 IFVLFSSAVYAVTELTESTNLSTLDIYQFTLTQDNMEVLSQGASVER--------DFIPA 73
IF+L + A+ E+ T++STLDI +F L +N+ VLS+ SV++ +++
Sbjct: 26 IFLLPIQSYAALEEIKNGTDISTLDIRKFNLNINNVSVLSKSQSVDQFHLSNPHYEYLSG 85
Query: 74 NGNWKESTVFSLRVDKNQTQ-QTFNSPIQLRFNNAGIVNGKAVDVYVTFHSIDTYLV--- 129
E F+L+VDK++ Q Q F +P+ L+F N G VNGK VD Y+ F+ + + +
Sbjct: 86 GAYPGEMENFTLKVDKSKKQDQVFENPLSLKFTNIGTVNGKQVDAYLNFNKVTLHYLNTA 145
Query: 130 QRNTDYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHD--MHGSFALDTNVTAE 187
Q ++ K+ V F ++ E W S + +I + P+ HD M+ +F +D +VTAE
Sbjct: 146 QAESEMNSAQKSTVEFFSISELWESNAFEIGNV---PYVDANHDYIMNKAFWIDADVTAE 202
Query: 188 LRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTSYALNETLVDN 247
+RY DGT TDLK+VM P+DID + +A +E F + + +N + N + L + +
Sbjct: 203 IRYADGTETDLKLVMKPTDIDAI-DANNLKETFYVKNYQNDVNLRLMNNANVLVQEEASD 261
Query: 248 KTTWRPTRSTQGDSDEHNVSGFAVRSETNAVRFEFTTTAGSGGLFGFYTEA--PKAPVKQ 305
+T+W T+ T G +E+NVSG A+RS +N++ F +++T +FG Y E P+ PV +
Sbjct: 262 RTSWIATQITGGSYNENNVSGLALRSNSNSMNFGYSSTETCSAVFGLYIEKIDPR-PVLE 320
Query: 306 ASKDKLPALAGESLNYTAKFTMPTPGKDVIGSLSSMQMIETLDNRLDFQSLTLQLDGRTL 365
++PA G+ + Y A F +P PGKD++ + SS++M++ D RLD++ L ++ G TL
Sbjct: 321 VDPAEIPAKDGQDVTYKATFKVPVPGKDILAAPSSIEMVQKFDERLDYKELKVESGGVTL 380
Query: 366 TQGADYTLARDGQKVTVAINAKHLTSSNSGKEFTIIYKTKTNDNILQNRA-PIENRVAQE 424
+G DYT+ + GQ VTV + ++L NS + I YKT TN + + + I+N V
Sbjct: 381 QEGRDYTIEKTGQTVTVKMTPEYL-KGNSSSDIIITYKTATNKKVEEKGSEKIDNTVTLH 439
Query: 425 IDNIPVSSEIVTTNVLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKG 484
+DN+ S V+T +LY+K ++F SGT K LPQEV +LLP + NL NGS VTP P
Sbjct: 440 VDNLSAPSNQVSTALLYEKHHEFVSGTPGKELPQEVKDLLPATEKNLSNGSQVTPTQP-- 497
Query: 485 NKRLVSTSEGNWVFQNYDKESDTIQNQDVLFTGIWNF 521
NK V T+EG W F++YDK S+TI D F G W F
Sbjct: 498 NKTEVKTAEGTWSFKSYDKTSETINGADAHFVGTWEF 534
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 439 VLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVF 498
V +K ++F SGT K LPQEV +LLP DQ +L++GS VTP P + V TSEG W F
Sbjct: 1390 VTHKAVHEFVSGTPGKELPQEVKSLLPADQTDLKDGSQVTPTQPSQTE--VKTSEGTWSF 1447
Query: 499 QNYDKESDTIQNQDVLFTGIWNFQEYEKP 527
++YDK S+TI DV F G W F P
Sbjct: 1448 KSYDKISETINGSDVKFVGTWEFTASPAP 1476
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV +LLP DQ +L++GS TP P +K V T+EG W F++
Sbjct: 540 YKATHEFVSGTPGKELPQEVKDLLPADQTDLKDGSQSTPTQP--SKTEVKTAEGTWSFKS 597
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI DV F G W F
Sbjct: 598 YDKTSETINEADVHFVGTWEF 618
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV +LLP DQ +L++GS TP P +K V TSEG W F++
Sbjct: 792 YKATHEFVSGTPGKELPQEVKDLLPADQTDLKDGSQATPTQP--SKTEVKTSEGTWSFKS 849
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI D F G W F
Sbjct: 850 YDKPSETINGADAHFVGTWEF 870
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV LLP DQ +L++GS VTP P + V TSEG W F++
Sbjct: 1478 YKATHEFVSGTPGKELPQEVKALLPADQTDLKDGSQVTPTQPSQTE--VKTSEGTWSFKS 1535
Query: 501 YDKESDTIQNQDVLFTGIWNFQEYEKPKKEVFNKNNENIDNQEVKANDVL 550
YDK +TI D F G W F P K + NN + K +VL
Sbjct: 1536 YDKTLETINGADAHFVGTWEFTPALTPHKG--SGNNTKSEEATTKNKNVL 1583
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV +LLP DQ +L++GS TP P +K V T+EG W F++
Sbjct: 624 YKATHEFMSGTPGKELPQEVKDLLPADQTDLKDGSQATPTQP--SKTEVKTAEGTWSFKS 681
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI D F G W F
Sbjct: 682 YDKTSETINGADAHFVGTWEF 702
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV +LLP DQ +L++GS TP P +K V T+EG W F++
Sbjct: 708 YKATHEFVSGTPGKELPQEVKDLLPADQTDLKDGSQATPTQP--SKTEVKTTEGTWSFKS 765
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI D F G W F
Sbjct: 766 YDKTSETINGADAHFVGTWEF 786
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV +LLP Q +L++GS TP P +K V T+EG W F++
Sbjct: 1128 YKATHEFVSGTPGKELPQEVKDLLPVAQTDLKDGSQATPTQP--SKTEVKTTEGTWSFKS 1185
Query: 501 YDKESDTIQNQDVLFTGIWNFQEYEKP 527
YDK S+T+ DV F G W F P
Sbjct: 1186 YDKTSETVNGSDVKFVGTWEFTASPAP 1212
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 439 VLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVF 498
V +K ++F SGT K LPQEV LLP DQ +L++G VTP P + V TSEG W F
Sbjct: 1214 VTHKAVHEFVSGTPGKELPQEVKALLPVDQTDLKDGIQVTPTQPSQTE--VKTSEGTWSF 1271
Query: 499 QNYDKESDTIQNQDVLFTGIWNFQEYEKP 527
++YDK S+T+ DV F G W F P
Sbjct: 1272 KSYDKTSETVNGSDVKFVGTWEFTASPAP 1300
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 439 VLYKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVF 498
V +K ++F SGT K LPQEV LLP DQ +L++G VTP P + V TSEG W F
Sbjct: 1302 VTHKAVHEFVSGTPGKELPQEVKALLPVDQTDLKDGIQVTPTQPSQTE--VKTSEGTWSF 1359
Query: 499 QNYDKESDTIQNQDVLFTGIWNFQEYEKP 527
++YDK S+T+ DV F G W F P
Sbjct: 1360 KSYDKTSETVNGSDVKFVGTWEFTASPAP 1388
Score = 76.3 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LPQEV +LLP Q +L++GS TP P +K V T+EG W F++
Sbjct: 1044 YKATHEFVSGTPGKELPQEVKDLLPVAQTDLKDGSQATPTKP--SKTEVKTTEGTWSFKS 1101
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI D F G W F
Sbjct: 1102 YDKTSETINGADAHFVGTWEF 1122
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SG K LPQEV +LLP Q +L++GS P P +K V T+EG W F++
Sbjct: 960 YKATHEFVSGNPGKELPQEVKDLLPVAQTDLKDGSQAMPTQP--SKTEVKTAEGTWSFKS 1017
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI D F G W F
Sbjct: 1018 YDKTSETINGADAHFVGTWEF 1038
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +++F SGT K LP+EV LLP Q +L++GS P P +K V T+EG W F++
Sbjct: 876 YKATHEFVSGTPGKELPREVKALLPVAQTDLKDGSQAMPTQP--SKTEVKTAEGTWSFKS 933
Query: 501 YDKESDTIQNQDVLFTGIWNF 521
YDK S+TI D F G W F
Sbjct: 934 YDKPSETINGADAHFVGTWEF 954
>gi|125717852|ref|YP_001034985.1| Collagen-binding surface protein, putative [Streptococcus sanguinis
SK36]
gi|125497769|gb|ABN44435.1| Collagen-binding surface protein, putative [Streptococcus sanguinis
SK36]
Length = 806
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 441 YKKSYQFESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQN 500
YK +Y+F S ++SLP EV +LLP D +G+ V P K+ V S+G W F
Sbjct: 639 YKATYEFVSADPNRSLPTEVTDLLPNDATEYADGAAVQAVQPA--KKTVEASDGTWKFLK 696
Query: 501 YDKESDTIQNQDVLFTGIWNFQ 522
YD +S TI DV FTG W F+
Sbjct: 697 YDADSKTIAGSDVKFTGTWTFE 718
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 33/150 (22%)
Query: 441 YKKSYQF-ESGTQDKSLPQEVLNLLPQDQHNLENGSTVTPDSPKGNKRLVSTSEGNWVFQ 499
Y SY+F S +LP+EV +LLP D + +G+ V P K V+ +EG W F+
Sbjct: 553 YGVSYEFLSSNAAYPNLPKEVTDLLPADANRYTSGTNVDAKQPA--KTSVTVAEGTWSFE 610
Query: 500 NY-DKESDTIQNQDVLFTGIWNFQEYEKPKKEVFNKNNENIDNQEVKANDVLTYKITYKN 558
Y + S T+ ++D+ FTG WNF K YK TY+
Sbjct: 611 GYAETNSQTVADKDLKFTGKWNFTPAPK-------------------------YKATYEF 645
Query: 559 TS---DRELDVTITDELPKH-TDYVNGSTV 584
S +R L +TD LP T+Y +G+ V
Sbjct: 646 VSADPNRSLPTEVTDLLPNDATEYADGAAV 675
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.314 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,538,728,701
Number of Sequences: 5470121
Number of extensions: 111363397
Number of successful extensions: 238332
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 238264
Number of HSP's gapped (non-prelim): 32
length of query: 688
length of database: 1,894,087,724
effective HSP length: 140
effective length of query: 548
effective length of database: 1,128,270,784
effective search space: 618292389632
effective search space used: 618292389632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)