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068 ∞ ∞
069 ===========================================================================-->
070
071 <book lang="en">
072
073 <bookinfo>
074 <title>Atlantis Online Documentation
075 </title>
076 <author>
077 <surname>Atlantis Support Group</surname>
078 </author>
079 <affiliation>
080 <address format="linespecific">CERN
081 <email>Atlantis.Support@CERN.CH</email></address>
082 </affiliation>
083 <pubdate>Docbook V1.4 01-may-2007</pubdate>
084 <copyright>
085 <year>2006-2007</year>
086 <holder>ATLAS Collaboration</holder>
087 </copyright>
088 </bookinfo>
089
090 <!--=======================================================================-->
091 <chapter id="HelpHowTo">
092 <title id="HelpHowTo.title">About the Atlantis Help System</title>
093
094 <para>
095 The Atlantis event display program has two independent systems for
096 online help, <emphasis>tooltips</emphasis> and
097 <emphasis>online documentation</emphasis>.
098 The tooltips are integrated into the program,
099 the online documentation is placed outside the program, but is shown
100 in a pop-up window when referenced from the program.
101 </para>
102
103 <para>
104 <emphasis>Tooltips</emphasis>
105 </para>
106
107 <para>
108 Tooltip help consists of short text messages associated with practically
109 every graphical component of the user interface. You obtain these messages
110 by stopping the mouse cursor in the area you want to get help for.
111 If a message exists for the component it will appear on the screen after
112 a few moments.
113 </para>
114
115 <para>
116 <emphasis>Online documentation</emphasis>
117 </para>
118
119 <para>
120 The online documentation is a hierarchically organized set of pages,
121 linked to each other by hypertext links. These pages provide much more
122 detailed descriptions than tooltips, but not every graphical component
123 has an associated page. The online documentation is displayed in the
124 help pop-up window
125 (see <xref endterm="HelpWindow.title" linkend="HelpWindow"></xref>)
126 that is opened via the
127 <emphasis>Help→Online Help System</emphasis> menu option of the menu of
128 the Control Window
129 (see <xref endterm="ControlWindow.title" linkend="ControlWindow"></xref>).
130 This window contains the table of contents in the left margin for easy
131 navigation.
132 </para>
133
134 <para>
135 The hierarchy of pages is reflected in the terms chapter and section.
136 </para>
137
138 <para>
139 In the help pop-up window you can start navigating and use the Table of
140 Contents to directly go to the page you are interested in.
141 </para>
142
143 <para>
144 An alternative and more direct way to access the online documentation of
145 a graphical component is to <emphasis>right-click</emphasis> on that
146 component.
147 This will show the available help page directly in the help pop-up window.
148 </para>
149
150 <para>
151 The online documentation is also accessible via the
152 <ulink url="http://atlantis.web.cern.ch/atlantis/">
153 <emphasis>Atlantis website</emphasis></ulink>, both as webpages and as PDF
154 document (select <emphasis>Documentation</emphasis> in the left margin of
155 a webpage of the Atlantis website).
156 </para>
157
158 </chapter>
159
160 <!--=======================================================================-->
161 <chapter id="Introduction">
162 <title id="Introduction.title">Introduction</title>
163
164 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
165 <sect1 id="AboutAtlantis">
166 <title id="AboutAtlantis.title">2.1 About Atlantis</title>
167
168 <para>
169 Atlantis is an event display program for the
170 <ulink url="http://www.cern.ch/atlas/">ATLAS</ulink> experiment at
171 <ulink url="http://www.cern.ch/">CERN</ulink>'s
172 <ulink url="http://www.cern.ch/lhc/">Large Hadron Collider</ulink>.
173 The primary goal of the program is <emphasis>the visual investigation and
174 the understanding of the physics of complete events</emphasis>.
175 Secondary goals are to help develop reconstruction and analysis algorithms,
176 to facilitate debugging during commisioning and to create pictures and
177 animations for publications, presentations and exhibitions.
178 </para>
179
180 <para>
181 Specific features of the program are:
182
183 <itemizedlist>
184 <listitem>
185 <para>
186 The use of <emphasis>data oriented projections</emphasis>.
187 See <xref linkend="Projection"></xref>.
188 </para>
189 </listitem>
190 <listitem>
191 <para>
192 The use of
193 <emphasis>subviews within the display area window</emphasis> to be able to
194 view various projections simultaneously.
195 See <xref endterm="Canvas.title" linkend="Canvas"></xref>.
196 </para>
197 </listitem>
198 <listitem>
199 <para>
200 <emphasis>2D animations</emphasis> beyond panning and zooming.
201 </para>
202 </listitem>
203 <listitem>
204 <para>
205 <emphasis>3D synchronous pointers</emphasis> across the various
206 projections, so you may pick an object in one projection and see where it is
207 located in the other projections.
208 </para>
209 </listitem>
210 <listitem>
211 <para>
212 A basically <emphasis>mouse driven user interface</emphasis>
213 using generally applied
214 facilities of modern user interfaces (e.g. pop-up, tooltip).
215 See <xref linkend="UserInterface"></xref>.
216 </para>
217 </listitem>
218 </itemizedlist>
219
220 Atlantis is based on the
221 <ulink url="http://www.cern.ch/aleph/">ALEPH</ulink> event display
222 <ulink url="http://www.cern.ch/aleph/dali/">DALI</ulink> and is written
223 entirely in <ulink url="http://java.sun.com/j2se/1.4.1/">JAVA</ulink>.
224 </para>
225
226 <para>
227 <emphasis>Leading Principles</emphasis>
228 </para>
229
230 <para>
231 Three leading principles form the base of Atlantis development:
232
233 <itemizedlist>
234 <listitem>
235 <para>
236 Atlantis is <emphasis>fast</emphasis>.
237 </para>
238 </listitem>
239 <listitem>
240 <para>
241 Atlantis is used <emphasis>intuitively</emphasis>.
242 </para>
243 </listitem>
244 <listitem>
245 <para>
246 Atlantis is used for <emphasis>complete ATLAS events</emphasis>.
247 </para>
248 </listitem>
249 </itemizedlist>
250
251 So we try to realize:
252 <emphasis>Everything quickly available for everybody!</emphasis>
253 </para>
254
255 </sect1>
256
257 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
258 <sect1 id="Roadmap">
259 <title id="Roadmap.title">2.2 Roadmap of the Atlantis Online Documentation</title>
260
261 <para>
262 This section gives a short description of the structure of the documentation.
263 </para>
264
265 <para>
266 <xref linkend="Introduction"></xref> describes some basics:
267 see <xref endterm="YZ1.title" linkend="YZ1"></xref> and
268 <xref endterm="PictureNecessities.title" linkend="PictureNecessities"></xref>.
269 Information for new users can be found via
270 <xref endterm="DIRinfo.title" linkend="DIRinfo"></xref>.
271 </para>
272
273 <para>
274 <xref linkend="UserInterface"></xref>
275 describes how the user interface is set up and gives
276 short descriptions of its full functionality.
277 Topics include: read events from various sources (details for
278 interactive selection from Athena in <xref linkend="Athena"></xref>,
279 maintain lists of personally selected data, maintain a personal startup
280 configuration file, choose shape and subdivision of the Canvas,
281 reset the program to initial settings, access help information,
282 select and use interactions and projections (details in
283 <xref linkend="Interactions"></xref> and <xref linkend="Projection"></xref>,
284 select data and apply cuts on selected data (details in
285 <xref linkend="DataMain"></xref>, change attributes of detector elements and
286 data (details in <xref linkend="Detector"></xref>.
287 </para>
288
289 <para>
290 <xref linkend="Interactions"></xref> describes in detail the various
291 interactions that work on the pictures generated on the Canvas.
292 </para>
293
294 <para>
295 <xref linkend="Projection"></xref> describes in detail the various projections
296 that can be applied to pictures on the Canvas.
297 </para>
298
299 <para>
300 <xref linkend="DataMain"></xref>
301 describes in detail how to make selections from the availabe data, which
302 cuts can be applied on the selected data and how cuts can be applied.
303 </para>
304
305 <para>
306 <xref linkend="Detector"></xref>
307 describes in detail the detector and data elements with attributes that
308 can be modified.
309 </para>
310
311 <para>
312 <xref linkend="Athena"></xref>
313 describes in detail the interactive selection of events from Athena.
314 </para>
315 </sect1>
316
317 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
318 <sect1 id="YZ1">
319 <title id="YZ1.title">2.3 Which coordinate systems are used?</title>
320
321 <para>
322 The ATLAS coordinate system (X,Y,Z) is defined as a right-handed
323 system:
324
325 <itemizedlist>
326 <listitem>
327 <para>
328 X = horizontal axis, pointing to the centre of the LHC ring,
329 </para>
330 </listitem>
331 <listitem>
332 <para>
333 Y = vertical axis, pointing upward,
334 </para>
335 </listitem>
336 <listitem>
337 <para>
338 Z = horizontal axis, following the beam direction.
339 </para>
340 </listitem>
341 </itemizedlist>
342 </para>
343
344 <para>
345 Additionally, the coordinate system (φ,η,ρ) is defined
346 as:
347
348 <itemizedlist>
349 <listitem>
350 <para>
351 ρ = sqrt(X<superscript>2</superscript>+Y<superscript>2</superscript>),
352 </para>
353 </listitem>
354 <listitem>
355 <para>
356 φ = arctan(Y/X), the azimuthal angle,
357 φ = 0 corresponds to the positive X-axis,
358 </para>
359 </listitem>
360 <listitem>
361 <para>
362 η = arctan(ρ/Z).
363 </para>
364 </listitem>
365 </itemizedlist>
366 </para>
367
368 </sect1>
369
370 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
371 <sect1 id="PictureNecessities">
372 <title id="PictureNecessities.title">2.4 What is necessary to draw a picture?</title>
373
374 <para>
375 In order to draw a picture, parameters must be set and selections must be
376 made.
377 All parameters and selections have default values which are used to draw
378 proper pictures when Atlantis is started.
379 </para>
380
381 <para>
382 <emphasis>However, you probably want more!</emphasis>
383 </para>
384
385 <para>
386 The following list gives an overview of parameters and selections and where
387 they may be changed:
388
389 <itemizedlist>
390 <listitem>
391 <para>
392 <emphasis>Canvas pad</emphasis>
393 </para>
394 <para>
395 The place where a picture is drawn. Selection of a canvas pad
396 (see <xref endterm="Window.title" linkend="Window"></xref>)
397 and manipulation
398 of the picture in a canvas pad (e.g. copying into another canvas pad)
399 are done via the canvas control
400 (see <xref endterm="WindowControl.title" linkend="WindowControl"></xref>)
401 of the Control Window.
402 </para>
403 <para>
404 A canvas pad is a subview of the Canvas
405 (see <xref endterm="Canvas.title" linkend="Canvas"></xref>).
406 </para>
407 </listitem>
408 <listitem>
409 <para>
410 <emphasis>Interaction</emphasis>
411 </para>
412 <para>
413 The type of interaction (e.g. zooming, picking)
414 (see <xref linkend="Interactions"></xref>)
415 to manipulate the picture
416 that will be drawn, is selected and controlled via the interaction control
417 (see
418 <xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
419 of the Control Window.
420 </para>
421 </listitem>
422 <listitem>
423 <para>
424 <emphasis>Projection</emphasis>
425 </para>
426 <para>
427 The projection (see <xref linkend="Projection"></xref>)
428 used to create the picture for the canvas pad. A projection
429 is selected via the <emphasis>Proj</emphasis> tab of the parameter control
430 (see
431 <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
432 of the Control Window.
433 Specific projection parameters of the selected projection are displayed in
434 the parameter control of the Control Display and can be modified now.
435 </para>
436 </listitem>
437 <listitem>
438 <para>
439 <emphasis>Data</emphasis>
440 </para>
441 <para>
442 The data to be used can be selected via the <emphasis>Data</emphasis>
443 tab of the parameter control
444 (see
445 <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
446 of the Control Window.
447 See <xref endterm="Data.title" linkend="Data"></xref>
448 for a list of data types.
449 </para>
450 </listitem>
451 <listitem>
452 <para>
453 <emphasis>Cuts</emphasis>
454 </para>
455 <para>
456 Cuts (see <xref endterm="Cuts.title" linkend="Cuts"></xref>)
457 on physical values of the selected data can be set via the
458 <emphasis>Cuts</emphasis> tab of the parameter control
459 (see
460 <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
461 of the Control Window.
462 </para>
463 </listitem>
464 <listitem>
465 <para>
466 <emphasis>Detector colors</emphasis>
467 </para>
468 <para>
469 Detector colors
470 (see <xref endterm="Det.title" linkend="Det"></xref>)
471 can be set via the <emphasis>Det</emphasis> tab of the parameter control
472 (see
473 <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
474 of the Control Window.
475 </para>
476 </listitem>
477 <listitem>
478 <para>
479 <emphasis>Data colors and symbols</emphasis>
480 </para>
481 <para>
482 Colors and symbols of the detector subsystem data can be set via the
483 <emphasis>InDet</emphasis>, <emphasis>Calo</emphasis> and
484 <emphasis>MuonDet</emphasis> tabs of the parameter control
485 (see
486 <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
487 of the Control Window.
488 </para>
489 </listitem>
490 </itemizedlist>
491 </para>
492
493 </sect1>
494
495 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
496 <sect1 id="DIRinfo">
497 <title id="DIRinfo.title">2.5 Download, install and run information</title>
498
499 <para>
500 Starting November 17, 2005, Atlantis is distributed with the ATLAS software
501 release.
502 It is available as executables "atlantis" (full version) and
503 "atlantis_beginner" (version with a limited set of GUI options).
504 </para>
505
506 <para>
507 <emphasis>N.B.: Note, however, that Atlantis does not depend on any ATLAS
508 software, only JAVA is needed to run it.</emphasis>
509 </para>
510
511 <para>
512 See the Download page of the
513 <ulink url="http://atlantis.web.cern.ch/atlantis/">
514 <emphasis>Atlantis website</emphasis></ulink> for directions how to get
515 Atlantis.
516 See the Install page for directions to run Atlantis on Linux, Mac and
517 MS-Windows systems.
518 </para>
519
520 <para>
521 A tag is used in the Atlantis run command to indicate normal events (no tag),
522 Fast Simulation events (tag=Fast), Combined Test Beam events (tag=TB) or a
523 beginner's version with a limited set of GUI options (tag=BEGINNER).
524 </para>
525
526 <para>
527 To change the upper limit of the Atlantis internal work memory see
528 <xref endterm="WorkMemoryLimit.title" linkend="WorkMemoryLimit"></xref>.
529 </para>
530
531 <para>
532 <emphasis>N.B.: Atlantis versions require JAVA version 1.4 or higher to run.
533 However, JAVA version 1.5 is preferred and is currently used for
534 development.</emphasis>
535 </para>
536
537 </sect1>
538
539 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
540 <sect1 id="WorkMemoryLimit">
541 <title id="WorkMemoryLimit.title">2.6 Work memory limit</title>
542
543 <para>
544 The default value of the maximum internal work memory to process events in
545 Atlantis is 64MB.
546 If you use the option overlay events (see the menu of the Control Window) or
547 if you work with very large events, you may want to increase this limit.
548 In order to
549 increase this limit, a running option can be specified at Atlantis startup.
550 E.g. to change the default value to 128MB:
551 </para>
552
553 <para>
554 <informalexample>
555 <programlisting format="linespecific">
556 java -Xmx128m -jar atlantis.jar
557 </programlisting>
558 </informalexample>
559 </para>
560
561 </sect1>
562
563 </chapter>
564
565 <!--=======================================================================-->
566 <chapter id="UserInterface">
567 <title id="UserInterface.title">User Interface</title>
568
569 <para>
570 The Atlantis user interface is
571 basically mouse driven and using generally applied facilities of modern user
572 interfaces (e.g. pop-up, tooltip). It consists of a permanent
573 <emphasis>Control Window</emphasis> "Atlantis GUI"
574 (see <xref endterm="ControlWindow.title" linkend="ControlWindow"></xref>), a permanent
575 display area window "Atlantis Canvas" or <emphasis>Canvas</emphasis>
576 (see <xref endterm="Canvas.title" linkend="Canvas"></xref>)
577 and various <emphasis>pop-up windows</emphasis>
578 (see <xref endterm="PopUpWindows.title" linkend="PopUpWindows"></xref>).
579 </para>
580
581 <para>
582 Besides, <emphasis>modifier keys</emphasis>
583 (see <xref endterm="MouseModifierKeys.title" linkend="MouseModifierKeys"></xref>)
584 are available for quick view and control of parameters and selections.
585 </para>
586
587 <para>
588 The Control Window is used to view and modify parameters and selections
589 that control the pictures on the Canvas. The pop-up windows are available for
590 quick viewing and modification of relevant parameters and selections.
591 </para>
592
593 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
594 <sect1 id="ControlWindow">
595 <title id="ControlWindow.title">3.1 Control Window</title>
596
597 <para>
598 The Control Window, "Atlantis GUI", is opened when Atlantis is started.
599 It is used to view and modify parameters and selections that control the
600 pictures on the Canvas, the display area of Atlantis.
601 Functionality is grouped into components, namely (listed from top to
602 bottom of the Control Window):
603
604 <itemizedlist>
605 <listitem>
606 <para>
607 <emphasis>Menu</emphasis>
608 </para>
609 <para>
610 Provides functionality for I/O, program customisation and the help system.
611 See <xref endterm="Menu.title" linkend="Menu"></xref>.
612 </para>
613 </listitem>
614 <listitem>
615 <para>
616 <emphasis>Canvas Control</emphasis>
617 </para>
618 <para>
619 Provides functionality to select a canvas pad and to copy
620 pictures between canvas pads.
621 See <xref endterm="WindowControl.title" linkend="WindowControl"></xref>.
622 </para>
623 </listitem>
624 <listitem>
625 <para>
626 <emphasis>Interaction Control</emphasis>
627 </para>
628 <para>
629 Provides functionality for user interaction with the program (pick, zoom,
630 transformations, projections).
631 See <xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>.
632 </para>
633 </listitem>
634 <listitem>
635 <para>
636 <emphasis>Parameter Control</emphasis>
637 </para>
638 <para>
639 Provides functionality for viewing and changing various parameters
640 (data selection, cuts, detector, subdetector systems, projections).
641 See <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>.
642 </para>
643 </listitem>
644 <listitem>
645 <para>
646 <emphasis>Output Display</emphasis>
647 </para>
648 <para>
649 Displays specific output of the program (picking output, cuts summary,
650 etc.). See <xref endterm="OutputDisplay.title" linkend="OutputDisplay"></xref>.
651 </para>
652 </listitem>
653 </itemizedlist>
654 </para>
655
656 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
657 <sect2 id="Menu">
658 <title id="Menu.title">3.1.1 Menu</title>
659
660 <para>
661 The Menu is positioned at the very top of the Atlantis Control Window.
662 It contains the items <emphasis>File</emphasis>,
663 <emphasis>Preferences</emphasis>, <emphasis>Lists</emphasis>,
664 <emphasis>Demo</emphasis>, <emphasis>Reset</emphasis>,
665 <emphasis>Previous</emphasis> (previous event),
666 <emphasis>Next</emphasis> (next event), <emphasis>Help</emphasis>.
667 The options of the menu items are briefly described below.
668 </para>
669
670 <para>
671 <emphasis>File</emphasis>
672 </para>
673
674 <para>
675 The File menu item is used to perform operations on event files and to exit
676 Atlantis. Note that event files are expected to be in XML format (which may
677 also be zipped). The item contains the following options:
678
679 <itemizedlist>
680 <listitem>
681 <para>
682 <emphasis>Read Event</emphasis>
683 </para>
684 <para>
685 Displays a dialog window where you can choose which event file
686 to read from your local computer.
687 </para>
688 </listitem>
689 <listitem>
690 <para>
691 <emphasis>Read Event From URL</emphasis>
692 </para>
693 <para>
694 Displays a dialog window where you can specify a URL to read events from.
695 </para>
696 </listitem>
697 <listitem>
698 <para>
699 <emphasis>Read Event From Server</emphasis>
700 </para>
701 <para>
702 Displays a dialog window where you can specify a
703 server name or IP-address to read events from. This option can be used to
704 start e.g. online event monitoring with Atlantis. See
705 <xref endterm="EventAccess.title" linkend="EventAccess"></xref> for details.
706 </para>
707 </listitem>
708 <listitem>
709 <para>
710 <emphasis>Interactive Athena</emphasis>
711 </para>
712 <para>
713 Displays a dialog window to select and fetch events interactively
714 from Athena. See <xref linkend="Athena"></xref> for further details.
715 </para>
716 </listitem>
717 <listitem>
718 <para>
719 <emphasis>Save Canvas</emphasis>
720 </para>
721 <para>
722 Displays the graphics output format options from which you may select
723 the one you want to use to save pictures shown on the Canvas.
724 <itemizedlist>
725 <listitem>
726 <para>
727 <emphasis>EPS</emphasis>
728 </para>
729 <para>
730 Encapsulated PostScript. Vector graphics format for posters,
731 publications, etc.
732 </para>
733 </listitem>
734 <listitem>
735 <para>
736 <emphasis>PNG</emphasis>
737 </para>
738 <para>
739 Portable Network Graphics. A compressed bitmap format to be used in
740 Powerpoint presentations, etc.
741 </para>
742 </listitem>
743 <listitem>
744 <para>
745 <emphasis>GIF</emphasis>
746 </para>
747 <para>
748 Graphics Interchange Format. Another compressed bitmap format.
749 </para>
750 </listitem>
751 </itemizedlist>
752 </para>
753 </listitem>
754 <listitem>
755 <para>
756 <emphasis>Animated event</emphasis>
757 </para>
758 </listitem>
759 <listitem>
760 <para>
761 <emphasis>Event Properties</emphasis>
762 </para>
763 <para>
764 Displays a pop-up window with a summary of various properties of the
765 selected event.
766 </para>
767 </listitem>
768 <listitem>
769 <para>
770 <emphasis>Overlay Events</emphasis>
771 </para>
772 <para>
773 Pile up events (as they are read from whichever source) and
774 display them superimposed. This option is turned off by default, tick the
775 box to enable. This feature was implemented for comparing simple low-size
776 events (e.g. cosmics single track events).
777 </para>
778 <para>
779 <emphasis>N.B.: Atlantis gets very slow and exhausts available memory
780 quickly if this option is enabled when reading in complex, several
781 magabytes large event files.
782 </emphasis>
783 </para>
784 <para>
785 <emphasis>N.B.: See <xref endterm="WorkMemoryLimit.title"
786 linkend="WorkMemoryLimit"></xref>
787 to increase the value of the internal work memory.
788 </emphasis>
789 </para>
790 </listitem>
791 <listitem>
792 <para>
793 <emphasis>Clear Event Container</emphasis>
794 </para>
795 <para>
796 Clicking this item empties all the events read into
797 Atlantis after Overlay Events was enabled, the last event remains.
798 </para>
799 </listitem>
800 <listitem>
801 <para>
802 <emphasis>Read Geometry...</emphasis>
803 </para>
804 <para>
805 Displays a dialog window to select and apply a new
806 geometry file in XML format.
807 </para>
808 </listitem>
809 <listitem>
810 <para>
811 <emphasis>Exit</emphasis>
812 </para>
813 <para>
814 Exit Atlantis.
815 </para>
816 </listitem>
817 </itemizedlist>
818 </para>
819
820 <para>
821 <emphasis>Preferences</emphasis>
822 </para>
823
824 <para>
825 The Preferences menu item is responsible for customizing the application.
826 It contains the following options:
827
828 <itemizedlist>
829 <listitem>
830 <para>
831 Change Canvas Layout - Displays a dialog window that allows the user to
832 select a shape and layout set that is applied to the Canvas.
833 See <xref endterm="Canvas.title" linkend="Canvas"></xref>.
834 </para>
835 </listitem>
836 <listitem>
837 <para>
838 Select Color Map - Displays a dialog window which allows the
839 user to choose the color set used to draw the pictures.
840 There are four color sets:
841 <itemizedlist>
842 <listitem>
843 <para>
844 Display - Default color set used for display.
845 </para>
846 </listitem>
847 <listitem>
848 <para>
849 Printer - The set of colors used when printing.
850 </para>
851 </listitem>
852 <listitem>
853 <para>
854 Gray - The grayscale set of colors.
855 </para>
856 </listitem>
857 <listitem>
858 <para>
859 B/W - The black-and-white set of colors.
860 </para>
861 </listitem>
862 </itemizedlist>
863 </para>
864 </listitem>
865 <listitem>
866 <para>
867 Color Map Editor - Displays a dialog window that allows the
868 user to edit any of the color sets described above.
869 </para>
870 </listitem>
871 <listitem>
872 <para>
873 Read Color Map - Displays a dialog window that allows the
874 user to replace the current colormap with one previously stored on an XML
875 file.
876 </para>
877 </listitem>
878 <listitem>
879 <para>
880 Save Current Color Map - Displays a dialog window that allows the
881 user to store the current colormap to an XML file for later use.
882 </para>
883 </listitem>
884 <listitem>
885 <para>
886 Save Current Configuration - Displays a dialog window that allows the user
887 to store the current status (configuration) of the program to an XML file
888 for later use.
889 </para>
890 </listitem>
891 <listitem>
892 <para>
893 Show Pointer Position Window - Displays a dialog window which will
894 show the user the position of the pointer when the user right clicks
895 while keeping the <emphasis>O</emphasis> key pressed.
896 </para>
897 </listitem>
898 <listitem>
899 <para>
900 Show Legend Window - Displays a dialog window that shows the color
901 thresholds for the cells of the summed LAr/HEC endcaps when
902 using Calo->LAr/HEC->Color Function->Energy
903 </para>
904 </listitem>
905 <listitem>
906 <para>
907 Show Canvas Title - Adds or removes the title bar from the top of the
908 Canvas. See <xref endterm="Canvas.title" linkend="Canvas"></xref>.
909 </para>
910 </listitem>
911 </itemizedlist>
912 </para>
913
914 <para>
915 <emphasis>Lists</emphasis>
916 </para>
917
918 <para>
919 Creates a Lists pop-up window
920 for the interactive definition and manipulation of subsets of data.
921 See <xref endterm="Lists.title" linkend="Lists"></xref>.
922 </para>
923
924 <para>
925 <emphasis>Reset</emphasis>
926 </para>
927
928 <para>
929 Resets Atlantis to the default initial settings.
930 </para>
931
932 <para>
933 <emphasis>Prev</emphasis>
934 </para>
935
936 <para>
937 Loads and displays the previous event if available.
938 </para>
939
940 <para>
941 <emphasis>Next</emphasis>
942 </para>
943
944 <para>
945 Loads and displays the next event if available.
946 </para>
947
948 <para>
949 <emphasis>Help</emphasis>
950 </para>
951
952 <para>
953 The Help menu item provides a way to get access to help information.
954 It has four options:
955
956 <itemizedlist>
957 <listitem>
958 <para>
959 <emphasis>Online Help System</emphasis>
960 </para>
961 <para>
962 Starts the help pop-up window with the table of contents.
963 See <xref endterm="HelpWindow.title" linkend="HelpWindow"></xref>.
964 </para>
965 </listitem>
966 <listitem>
967 <para>
968 <emphasis>Modifier Keys</emphasis>
969 </para>
970 <para>
971 Starts the modifier keys pop-up window
972 with information about active modifier keys.
973 See <xref endterm="MouseModifiersWindow.title" linkend="MouseModifiersWindow"></xref>.
974 </para>
975 </listitem>
976 <listitem>
977 <para>
978 <emphasis>Current Colors of objects</emphasis>
979 </para>
980 <para>
981 Starts a pop-up window to display the current color
982 of some selected objects (eg AOD/track/detector).
983 </para>
984 </listitem>
985 <listitem>
986 <para>
987 <emphasis>About</emphasis>
988 </para>
989 <para>
990 Starts the about pop-up window with Atlantis version,
991 website address and hypernews email address.
992 </para>
993 </listitem>
994 </itemizedlist>
995 </para>
996
997 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
998 <sect3 id="EventAccess">
999 <title id="EventAccess.title">3.1.1.1 Access to Events</title>
1000
1001 <para>
1002 Events to display in Atlantis can be fetched in many ways:
1003
1004 <itemizedlist>
1005 <listitem>
1006 <para>
1007 <emphasis>File → Read Event</emphasis>
1008 - an XML event file or a ZIP archive of XML event files from a local source
1009 (i.e. file on the local disk).
1010 </para>
1011 </listitem>
1012 <listitem>
1013 <para>
1014 <emphasis>File → Read Event From URL</emphasis>
1015 - from a web server over HTTP protocol.
1016 </para>
1017 </listitem>
1018 <listitem>
1019 <para>
1020 <emphasis>File → Read Event From Server</emphasis>
1021 - from a server started within
1022 the JiveXML algtool (Athena - Atlantis event data converter) running in the
1023 Athena framework. The name or the IP address of the remote server where
1024 Athena runs must be entered into the dialog. The event data is delivered to
1025 Atlantis either after the user clicks the <emphasis>Get Event</emphasis>
1026 button or automatically (with a specified delay) if the
1027 <emphasis>timer</emphasis> is enabled.
1028 </para>
1029 <para>
1030 In order to use this feature, the JiveXML server must be started in
1031 Athena/JiveXML which is done by
1032 <emphasis>ToolSvc.EventData2XML.OnlineMode = True</emphasis>
1033 (JiveXML job option). Every time Athena reconstructs an event,
1034 JiveXML will produce the XML event data for Atlantis. This mechanism can
1035 be used for online monitoring and gets rid of the intermediate step of
1036 writing the event data into the event files. Nonetheless, if the user spots
1037 an interesting event, the data read into Atlantis in this online mode can
1038 be stored on the local disk after clicking the
1039 <emphasis>Save Event</emphasis> button.
1040 If not stored, the event data will be lost with reading in the next event.
1041 </para>
1042 <para>
1043 The JiveXML server listens on the high number non-privileged port on the
1044 remote server. Should there be any firewall network security restrictions
1045 imposed, it might be necessary to communicate via an SSH tunnel between the
1046 local computer running Atlantis and the remote machine running Athena/JiveXML.
1047 </para>
1048 </listitem>
1049 <listitem>
1050 <para>
1051 <emphasis>File → Interactive Athena</emphasis>
1052 - getting the event on demand (<emphasis>Get Event</emphasis> button)
1053 while steering the Athena framework from Atlantis through
1054 the Athena interactive prompt. Further details in <xref linkend="Athena"></xref>.
1055 </para>
1056 </listitem>
1057 </itemizedlist>
1058 </para>
1059
1060 <para>
1061 When starting Atlantis, it tries by default to look for a file
1062 <emphasis>test_events.zip</emphasis> in the <emphasis>events</emphasis>
1063 directory. If not found, Atlantis starts without any event read in.
1064 </para>
1065
1066 <para>
1067 <emphasis>N.B.</emphasis>: When starting Atlantis in the
1068 <emphasis>Fast</emphasis> or the <emphasis>TB</emphasis> mode,
1069 the event archives <emphasis>test_eventsFast.zip</emphasis>, resp.
1070 <emphasis>test_eventsTB.zip</emphasis> are looked for.
1071 </para>
1072
1073 </sect3>
1074
1075 </sect2>
1076
1077 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1078 <sect2 id="WindowControl">
1079 <title id="WindowControl.title">3.1.2 Canvas Control</title>
1080
1081 <para>
1082 Pictures are shown in the display area window or Canvas
1083 (see <xref endterm="Canvas.title" linkend="Canvas"></xref>),
1084 which may have one or more subwindows, the <emphasis>canvas pads</emphasis>.
1085 So in the case of multiple canvas pads, one may e.g. view event data in
1086 different projections on the Canvas. The possible canvas pad
1087 configurations are specified in <emphasis>layout sets</emphasis>.
1088 </para>
1089
1090 <para>
1091 A layout set is selected via the
1092 <emphasis>Preferences→Change Canvas Layout</emphasis> menu
1093 option of the Menu
1094 (see <xref endterm="Menu.title" linkend="Menu"></xref>) of the
1095 Control Window.
1096 </para>
1097
1098 <para>
1099 The layouts of the current layout set are displayed in the Control Window as
1100 a row of rectangles directly under the menu. A rectangle is divided into one
1101 or more boxes, representing the canvas pads. A letter or number in a box
1102 represents the canvas pad name.
1103 </para>
1104
1105 <para>
1106 For example, in Landscape Layout the canvas pads are UDR, 123456, SR, W,
1107 LMR and in Square Layout they are W, SRB, 123456789, LMRB, UCD369.
1108 </para>
1109
1110 <para>
1111 Canvas Control provides functionality for different kinds of operations on
1112 the boxes:
1113
1114 <itemizedlist>
1115 <listitem>
1116 <para>
1117 <emphasis>Making a canvas pad current</emphasis>
1118 </para>
1119 <para>
1120 The current canvas pad corresponds to the box with the white background.
1121 Clicking with the left mouse button into another named box will select
1122 another canvas pad to become current. If this is not visible on the
1123 Canvas it will be made visible.
1124 </para>
1125 <para>
1126 <emphasis>N.B.:</emphasis>
1127 </para>
1128 <para>
1129 You can also make a canvas pad current by clicking on it in the Canvas
1130 (at least, if you can see part of the desired canvas pad).
1131 </para>
1132 </listitem>
1133 <listitem>
1134 <para>
1135 <emphasis>Copying the content of one canvas pad into another</emphasis>
1136 </para>
1137 <para>
1138 You can copy the content (picture) of one canvas pad into another by
1139 dragging and dropping it into another one. While you are dragging, the cursor
1140 will change to let you know that you are dragging. You can copy canvas
1141 windows even if they are not current. After the copy finishes the target
1142 canvas pad will become current.
1143 </para>
1144 <para>
1145 <emphasis>N.B.:</emphasis>
1146 </para>
1147 <para>
1148 Another possibility to copy is to drag from the Canvas Control into the
1149 Canvas
1150 (if you can see in the Canvas at least a part of the target canvas pad).
1151 </para>
1152 </listitem>
1153 <listitem>
1154 <para>
1155 <emphasis>Zooming a region of one canvas pad into another</emphasis>
1156 </para>
1157 <para>
1158 Canvas Control contributes to the process of zooming with a rubber band,
1159 however you cannot perform a zoom by using Canvas Control only. Further
1160 information about using Canvas Control for zooming is available on the
1161 Rubberband page
1162 (see <xref endterm="Rubberband.title" linkend="Rubberband"></xref>).
1163 </para>
1164 </listitem>
1165 <listitem>
1166 <para>
1167 <emphasis>Accessing the pop-up Canvas Pad Menu</emphasis>
1168 </para>
1169 <para>
1170 The pop-up Canvas Pad Menu
1171 (see <xref endterm="WindowMenu.title" linkend="WindowMenu"></xref>) can be
1172 accessed by <emphasis>right-clicking</emphasis> with the mouse in the
1173 corresponding box.
1174 The corresponding canvas pad will become selected.
1175 </para>
1176 </listitem>
1177 </itemizedlist>
1178 </para>
1179
1180 </sect2>
1181
1182 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1183 <sect2 id="InteractionControl">
1184 <title id="InteractionControl.title">3.1.3 Interaction Control</title>
1185
1186 <para>
1187 The interaction control part of the Control Window
1188 (see <xref endterm="ControlWindow.title" linkend="ControlWindow"></xref>) is used to
1189 activate an interaction in a canvas pad and to modify interaction specific
1190 control options of the activated interaction. Control options are described
1191 under the specific interactions (see <xref linkend="Interactions"></xref>.
1192 </para>
1193
1194 <para>
1195 Interactions can be invoked in different ways:
1196
1197 <itemizedlist>
1198 <listitem>
1199 <para>
1200 Via the interaction control of the Control Window:
1201 </para>
1202 <para>
1203 In the Control Window they are represented as a set of tabs, each
1204 representing a specific interaction. Clicking on a tab makes the
1205 corresponding interaction available in the current canvas pad and
1206 displays control options (if available for the selected interaction) on
1207 the panel just below the set of tabs in the Control Window.
1208 </para>
1209 </listitem>
1210 <listitem>
1211 <para>
1212 Via a modifier key in a canvas pad:
1213 </para>
1214 <para>
1215 An alternative representation is obtained by holding the
1216 <emphasis>I</emphasis> key down and <emphasis>right-clicking</emphasis>
1217 inside the canvas pad for which you want to change an interaction.
1218 As result you will get a pop-up menu
1219 (see <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>)
1220 with the same set of tabs as in the Control Window.
1221 You can select the interaction you want.
1222 </para>
1223 </listitem>
1224 </itemizedlist>
1225
1226 Since not all interactions are available for all projections, only the
1227 available interactions are shown for a specific projection.
1228 </para>
1229
1230 </sect2>
1231
1232 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1233 <sect2 id="ParametersControl">
1234 <title id="ParametersControl.title">3.1.4 Parameter Control</title>
1235
1236 <para>
1237 Atlantis has many parameters. For convenience these parameters are combined
1238 into a number of groups that are accessed via the following tabs:
1239
1240 <itemizedlist>
1241 <listitem>
1242 <para>
1243 <emphasis>Proj</emphasis>
1244 </para>
1245 <para>
1246 To select a
1247 projection and to modify specific parameters of the selected projection.
1248 See <xref linkend="Projection"></xref>.
1249 </para>
1250 </listitem>
1251 <listitem>
1252 <para>
1253 <emphasis>Data</emphasis>
1254 </para>
1255 <para>
1256 To select the
1257 <xref endterm="DataTypes.title" linkend="DataTypes"></xref> of which the
1258 data will be used and to select the order of display
1259 (e.g. when using different track reconstructions). See
1260 <xref endterm="Data.title" linkend="Data"></xref>.
1261 </para>
1262 <para>
1263 See the <emphasis>InDet</emphasis>, <emphasis>Calo</emphasis> and
1264 <emphasis>MuonDet</emphasis> tabs below for the
1265 appearance of the data in the various subdetector systems.
1266 </para>
1267 </listitem>
1268 <listitem>
1269 <para>
1270 <emphasis>Cuts</emphasis>
1271 </para>
1272 <para>
1273 To apply cuts to the physical values of the selected data.
1274 See <xref endterm="Cuts.title" linkend="Cuts"></xref>.
1275 </para>
1276 </listitem>
1277 <listitem>
1278 <para>
1279 <emphasis>InDet</emphasis>
1280 </para>
1281 <para>
1282 To control the display and appearance of data in the inner detector.
1283 See <xref endterm="InDet.title" linkend="InDet"></xref>.
1284 </para>
1285 </listitem>
1286 <listitem>
1287 <para>
1288 <emphasis>Calo</emphasis>
1289 </para>
1290 <para>
1291 To control the display and appearance of data in the calorimeters.
1292 See <xref endterm="Calo.title" linkend="Calo"></xref>.
1293 </para>
1294 </listitem>
1295 <listitem>
1296 <para>
1297 <emphasis>MuonDet</emphasis>
1298 </para>
1299 <para>
1300 To control the display and appearance of data in the muon system.
1301 See <xref endterm="MuonDet.title" linkend="MuonDet"></xref>.
1302 </para>
1303 </listitem>
1304 <listitem>
1305 <para>
1306 <emphasis>AOD</emphasis>
1307 </para>
1308 </listitem>
1309 <listitem>
1310 <para>
1311 <emphasis>ATLAS</emphasis>
1312 </para>
1313 </listitem>
1314 </itemizedlist>
1315 </para>
1316
1317 </sect2>
1318
1319 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1320 <sect2 id="OutputDisplay">
1321 <title id="OutputDisplay.title">3.1.5 Output Display</title>
1322
1323 <para>
1324 The output display is located at the very bottom of the
1325 <emphasis>Control Window</emphasis>
1326 (see <xref endterm="ControlWindow.title" linkend="ControlWindow"></xref>)
1327 and is used as a replacement for standard terminal output.
1328 It provides information in a more readable format by using multiple fonts
1329 and colors.
1330 </para>
1331
1332 <para>
1333 Information is shown e.g. from:
1334
1335 <itemizedlist>
1336 <listitem>
1337 <para>
1338 Rubberband interaction
1339 (see <xref endterm="Rubberband.title" linkend="Rubberband"></xref>)
1340 </para>
1341 </listitem>
1342 <listitem>
1343 <para>
1344 Pick interaction
1345 (see <xref endterm="Pick.title" linkend="Pick"></xref>)
1346 </para>
1347 </listitem>
1348 </itemizedlist>
1349 </para>
1350
1351 </sect2>
1352
1353 </sect1>
1354
1355 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1356 <sect1 id="Canvas">
1357 <title id="Canvas.title">3.2 Canvas</title>
1358
1359 <para>
1360 The display area window or <emphasis>Canvas</emphasis> is the place where
1361 Atlantis draws pictures. It is opened when Atlantis is started.
1362 </para>
1363
1364 <para>
1365 <emphasis>Shape, Layout Set and Canvas Pads</emphasis>
1366 </para>
1367
1368 <para>
1369 The Canvas has a user selectable <emphasis>shape</emphasis> with associated
1370 <emphasis>layout set</emphasis>. A layout set is a set of predefined
1371 subwindows within the selected shape. These subwindows are used to draw
1372 pictures and are called <emphasis>canvas pads</emphasis>.
1373 </para>
1374
1375 <para>
1376 The different shapes of the Canvas are:
1377
1378 <itemizedlist>
1379 <listitem>
1380 <para>
1381 <emphasis>Landscape</emphasis>
1382 - Using a 3×2 grid to define the associated layout set.
1383 </para>
1384 </listitem>
1385 <listitem>
1386 <para>
1387 <emphasis>Portrait</emphasis>
1388 - Using a 2×3 grid.
1389 </para>
1390 </listitem>
1391 <listitem>
1392 <para>
1393 <emphasis>Square</emphasis>
1394 - Using a 3×3 grid.
1395 </para>
1396 </listitem>
1397 <listitem>
1398 <para>
1399 <emphasis>Square B</emphasis>
1400 - Using a 3×3 grid (alternative layout set).
1401 </para>
1402 </listitem>
1403 <listitem>
1404 <para>
1405 <emphasis>Two Squares</emphasis>
1406 - Using a 2×1 grid.
1407 </para>
1408 </listitem>
1409 </itemizedlist>
1410 </para>
1411
1412 <para>
1413 The user may select a shape via the
1414 <emphasis>Preferences→Change Canvas Layout</emphasis> menu
1415 option of the Menu (see <xref endterm="Menu.title" linkend="Menu"></xref>)
1416 of the Control Window.
1417 The layout set of the selected shape is displayed in and controlled via the
1418 Canvas Control
1419 (see <xref endterm="WindowControl.title" linkend="WindowControl"></xref>)
1420 of the Control Window.
1421 </para>
1422
1423 <para>
1424 Each canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
1425 has associated with it a <emphasis>projection</emphasis>
1426 (see <xref linkend="Projection"></xref>),
1427 an <emphasis>interaction</emphasis> (e.g. zooming, copying, see
1428 <xref linkend="Interactions"></xref>)
1429 and a <emphasis>parameter set</emphasis> (see
1430 <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>
1431 of the Control Window).
1432 </para>
1433
1434 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1435 <sect2 id="Window">
1436 <title id="Window.title">3.2.1 Canvas Pads</title>
1437
1438 <para>
1439 Canvas pads are the subwindows of the Canvas into which Atlantis
1440 draws pictures (one picture per canvas pad).
1441 The selection of the shape and associated layout set
1442 of the Canvas determines the available canvas pads
1443 (see <xref endterm="Canvas.title" linkend="Canvas"></xref>).
1444 </para>
1445
1446 <para>
1447 Selection of the current canvas pad and copying
1448 of pictures between canvas pads is performed via the Canvas Control
1449 (see <xref endterm="WindowControl.title" linkend="WindowControl"></xref>)
1450 of the Control Window.
1451 </para>
1452
1453 <para>
1454 Each canvas pad has associated with it a projection
1455 (see <xref linkend="Projection"></xref>), an interaction
1456 (see <xref linkend="Interactions"></xref>) and a set of
1457 parameters, which are controlled via the Interaction Control
1458 (see <xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
1459 and the Parameter Control
1460 (see <xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
1461 of the Control Window.
1462 </para>
1463
1464 <para>
1465 Additionally, control is possible via the associated pop-up menus, which are
1466 activated by modifier keys in a canvas pad:
1467
1468 <table frame="topbot" pgwide="0">
1469 <title>Modifier keys and actions of canvas pad</title>
1470 <tgroup cols="2">
1471 <colspec colnum="1" colname="modifierkey" colwidth="80" align="left"></colspec>
1472 <colspec colnum="2" colname="action" colwidth="350" align="left"></colspec>
1473 <thead>
1474 <row rowsep="1">
1475 <entry>Modifier Key</entry>
1476 <entry>Action</entry>
1477 </row>
1478 </thead>
1479 <tbody>
1480 <row rowsep="1">
1481 <entry><emphasis>right-click</emphasis> only
1482 </entry>
1483 <entry>Interaction pop-up menu
1484 (see <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>):
1485 interaction dependent operations (e.g. type of rubberband)
1486 </entry>
1487 </row>
1488 <row rowsep="1">
1489 <entry><emphasis>I</emphasis> + <emphasis>right-click</emphasis>
1490 </entry>
1491 <entry>Interaction pop-up menu
1492 (see <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>):
1493 list with available interactions
1494 </entry>
1495 </row>
1496 <row rowsep="1">
1497 <entry><emphasis>P + <emphasis>right-click</emphasis></emphasis>
1498 </entry>
1499 <entry>Projection pop-up menu
1500 (see <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>):
1501 projection dependent (e.g. restore aspect ratio)
1502 </entry>
1503 </row>
1504 <row rowsep="1">
1505 <entry><emphasis>W + <emphasis>right-click</emphasis></emphasis>
1506 </entry>
1507 <entry>Canvas pad pop-up menu
1508 (see <xref endterm="WindowMenu.title" linkend="WindowMenu"></xref>):
1509 restore canvas pad defaults, rotation, flipping, etc.
1510 </entry>
1511 </row>
1512 </tbody>
1513 </tgroup>
1514 </table>
1515 </para>
1516
1517 </sect2>
1518
1519 </sect1>
1520
1521 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1522 <sect1 id="PopUpWindows">
1523 <title id="PopUpWindows.title">3.3 Pop-up Windows</title>
1524
1525 <para>
1526 These windows are popped up while running Atlantis, generally by using a
1527 modifier key
1528 (see <xref endterm="MouseModifierKeys.title" linkend="MouseModifierKeys"></xref>). The pop-up
1529 windows contain menus which provide different "one click" operations:
1530
1531 <itemizedlist>
1532 <listitem>
1533 <para>
1534 <emphasis>Canvas Pad Menu</emphasis>
1535 (see <xref endterm="WindowMenu.title" linkend="WindowMenu"></xref>)
1536 - Provides canvas pad related operations (restoring of defaults, rotation
1537 and flipping, etc.).
1538 </para>
1539 </listitem>
1540 <listitem>
1541 <para>
1542 <emphasis>Projection Menus</emphasis>
1543 (see <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>)
1544 - Provide projection specific operations. Each projection has it's own menu.
1545 </para>
1546 </listitem>
1547 <listitem>
1548 <para>
1549 <emphasis>Interaction Menus</emphasis>
1550 (see <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>)
1551 - Provide interaction specific operations. Not all interactions have such a
1552 menu.
1553 </para>
1554 </listitem>
1555 <listitem>
1556 <para>
1557 <emphasis>Lists Window</emphasis>
1558 (see <xref endterm="Lists.title" linkend="Lists"></xref>)
1559 - Allows the interactive definition and manipulation of subsets of data.
1560 </para>
1561 </listitem>
1562 <listitem>
1563 <para>
1564 <emphasis>Modifier Keys Window</emphasis>
1565 (see <xref endterm="MouseModifiersWindow.title" linkend="MouseModifiersWindow"></xref>)
1566 - Shows information about various modifier keys.
1567 </para>
1568 </listitem>
1569 <listitem>
1570 <para>
1571 <emphasis>Help Window</emphasis>
1572 (see <xref endterm="HelpWindow.title" linkend="HelpWindow"></xref>)
1573 - To browse the Atlantis Help System pages.
1574 </para>
1575 </listitem>
1576 <listitem>
1577 <para>
1578 <emphasis>ZMR Pop-up Menu</emphasis>
1579 (see <xref endterm="ZMR.title" linkend="ZMR"></xref>)
1580 - Zoom/Move/Rotate control.
1581 </para>
1582 </listitem>
1583 <listitem>
1584 <para>
1585 <emphasis>Interactive Athena</emphasis> (see <xref linkend="Athena"></xref>).
1586 - Dialog window for interaction with Athena.
1587 </para>
1588 </listitem>
1589 </itemizedlist>
1590 </para>
1591
1592 <para>
1593 The menus disappear either after the appropriate action has been selected or
1594 when another left-click is performed on the corresponding window.
1595 </para>
1596
1597 <para>
1598 See <xref endterm="MouseModifierKeys.title" linkend="MouseModifierKeys"></xref>.
1599 </para>
1600
1601 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1602 <sect2 id="WindowMenu">
1603 <title id="WindowMenu.title">3.3.1 Canvas Pad Menu</title>
1604
1605 <para>
1606 This pop-up menu provides canvas pad related operations such as restoring
1607 the defaults, rotation and flipping, etc. This menu is the same for all
1608 canvas pads and it is not projection dependent. It can be accessed in
1609 two different ways:
1610
1611 <itemizedlist>
1612 <listitem>
1613 <para>
1614 By applying the <emphasis>W + right-click</emphasis>
1615 combination in the canvas pad from which you want to get the menu.
1616 </para>
1617 </listitem>
1618 <listitem>
1619 <para>
1620 By <emphasis>right-clicking</emphasis> in one of the canvas
1621 mini-windows in the Canvas Control of the Control Window.
1622 </para>
1623 </listitem>
1624 </itemizedlist>
1625 </para>
1626
1627 <para>
1628 In both cases the Window pop-up menu will appear on the screen.
1629 The content of the menu is:
1630
1631 <itemizedlist>
1632 <listitem>
1633 <para>
1634 <emphasis>Horizontal Flip</emphasis>
1635 - mirrors the picture w.r.t vertical middle line of the selected canvas pad
1636 </para>
1637 </listitem>
1638 <listitem>
1639 <para>
1640 <emphasis>Vertical Flip</emphasis>
1641 - mirrors the picture w.r.t horizontal middle line of the selected canvas pad
1642 </para>
1643 </listitem>
1644 <listitem>
1645 <para>
1646 <emphasis>Rotate by 90</emphasis>
1647 - rotates the picture by 90<emphasis>°</emphasis> in the
1648 clockwise direction
1649 </para>
1650 </listitem>
1651 <listitem>
1652 <para>
1653 <emphasis>Rotate by -90</emphasis>
1654 - rotates the picture by 90<emphasis>°</emphasis> in the
1655 counterclockwise direction
1656 </para>
1657 </listitem>
1658 <listitem>
1659 <para>
1660 <emphasis>Toggle Scale</emphasis>
1661 - toggles <emphasis>on</emphasis> or <emphasis>off</emphasis> the state of
1662 the canvas pad scales
1663 </para>
1664 </listitem>
1665 <listitem>
1666 <para>
1667 <emphasis>Restore Size and Position</emphasis>
1668 - restores the size and the position of the
1669 picture in the selected canvas pad as it was at the startup of the program
1670 </para>
1671 </listitem>
1672 <listitem>
1673 <para>
1674 <emphasis>Freeze</emphasis>
1675 - Freezes the graphics state of the selected canvas pad
1676 </para>
1677 </listitem>
1678 <listitem>
1679 <para>
1680 <emphasis>Unfreeze</emphasis>
1681 - Unfreezes the graphics state of the selected canvas window
1682 </para>
1683 </listitem>
1684 </itemizedlist>
1685 </para>
1686
1687 <para>
1688 Any operation chosen from the Canvas Pad Menu is applied to the currently
1689 selected canvas pad.
1690 </para>
1691
1692 </sect2>
1693
1694 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1695 <sect2 id="ProjectionMenu">
1696 <title id="ProjectionMenu.title">3.3.2 Projection Menus</title>
1697
1698 <para>
1699 Each Atlantis projection (see <xref linkend="Projection"></xref>) has a pop-up menu
1700 associated with it. This menu contains projection dependent operations. To
1701 access the projection menu perform the combination
1702 <emphasis>P + right-click</emphasis>. As
1703 a result the window in which you have clicked will become selected and the
1704 menu will appear on the screen. If you select any of the operations of the
1705 projection menu, the operation will be applied to the currently selected
1706 window.
1707 </para>
1708
1709 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1710 </sect2><sect2 id="InteractionMenu">
1711 <title id="InteractionMenu.title">3.3.3 Interaction Menus</title>
1712
1713 <para>
1714 There are two typical pop-up menus for interaction control
1715 (see <xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>):
1716
1717 <itemizedlist>
1718 <listitem>
1719 <para>
1720 <emphasis>Interaction list pop-up menu</emphasis>
1721 </para>
1722 <para>
1723 A menu with a list of all available interactions in a canvas pad. This
1724 list is dependent on the selected projection in the canvas pad. The menu
1725 is invoked by keeping the <emphasis>I</emphasis> key down and
1726 <emphasis>right-clicking</emphasis>.
1727 </para>
1728 </listitem>
1729 <listitem>
1730 <para>
1731 <emphasis>Interaction pop-up menu</emphasis>
1732 </para>
1733 <para>
1734 Many Atlantis interactions have a pop-up menu with interaction dependent
1735 operations associated with the selected projection. To invoke the menu,
1736 <emphasis>right-click</emphasis> in the desired canvas pad.
1737 As a result the canvas
1738 window will become selected and the menu will appear on the screen. If you
1739 select any of the operations of the interaction menu, the operation will be
1740 applied to the currently selected canvas pad.
1741 </para>
1742 </listitem>
1743 </itemizedlist>
1744 </para>
1745
1746 <para>
1747 The ZMR Pop-up Menu is described in
1748 <xref endterm="ZMR.title" linkend="ZMR"></xref>.
1749 </para>
1750
1751 <para>
1752 The Fisheye Pop-up Menu is described in
1753 <xref endterm="FishEye.title" linkend="FishEye"></xref>.
1754 </para>
1755
1756 <para>
1757 The Skew Pop-up Menu is described in
1758 <xref endterm="Skew.title" linkend="Skew"></xref>.
1759 </para>
1760
1761 </sect2>
1762
1763 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1764 <sect2 id="Lists">
1765 <title id="Lists.title">3.3.4 Lists Window</title>
1766
1767 <para>
1768 The Lists pop-up window allows the interactive definition and manipulation
1769 of subsets of data. Lists are kept in the form of a singly-rooted tree and
1770 may be manipulated in a way similar to Windows Explorer.
1771 </para>
1772
1773 <para>
1774 <emphasis>Predefined lists</emphasis>
1775 </para>
1776
1777 <para>
1778 By default there are four predefined lists, three of which are used for
1779 special purposes:
1780
1781 <table frame="topbot" pgwide="0">
1782 <title>Predefined lists</title>
1783 <tgroup cols="2">
1784 <colspec colnum="1" colname="modifierkey" colwidth="80" align="left"></colspec>
1785 <colspec colnum="2" colname="action" colwidth="350" align="left"></colspec>
1786 <thead>
1787 <row rowsep="1">
1788 <entry>List</entry>
1789 <entry>Purpose</entry>
1790 </row>
1791 </thead>
1792 <tbody>
1793 <row rowsep="1">
1794 <entry><emphasis>Highlight</emphasis></entry>
1795 <entry>This list should contain at most one item that is to be drawn
1796 in a special highlighted color (normally white). This list is controlled
1797 via the pick interaction (see <xref endterm="Pick.title" linkend="Pick"></xref>).
1798 </entry>
1799 </row>
1800 <row rowsep="1">
1801 <entry><emphasis>Last Drawn</emphasis></entry>
1802 <entry>This list contains all data which were actually drawn on the
1803 screen by the last drawing operation. This list is by its very nature
1804 transient and can only be usefully manipulated after it has been copied.
1805 </entry>
1806 </row>
1807 <row rowsep="1">
1808 <entry><emphasis>Others</emphasis></entry>
1809 <entry>May be used to control the color of all data which are drawn
1810 in a picture but which are not given a color by any user defined list.
1811 </entry>
1812 </row>
1813 <row rowsep="1">
1814 <entry><emphasis>List 0</emphasis></entry>
1815 <entry>This is a predefined list which may be manipulated by the user.
1816 </entry>
1817 </row>
1818 </tbody>
1819 </tgroup>
1820 </table>
1821 </para>
1822
1823 <para>
1824 <emphasis>Nodes</emphasis>
1825 </para>
1826
1827 <para>
1828 The current node is indicated in the Lists Window by a purple background
1829 region drawn around its text. If no node is current, actions applied to the
1830 current list are applied to the root node "Lists". Nodes may be either
1831 directories (depicted by rectangles) or data items (depicted by squares).
1832 Data items may represent a single item (e.g. STr 5 for simulated track number
1833 5) or a group of similar items (e.g. STr(22) for a group of 22 simulated
1834 tracks).
1835 </para>
1836
1837 <para>
1838 <emphasis>Adding data to the current list</emphasis>
1839 </para>
1840
1841 <para>
1842 Single user selected items may be added to the currently selected directory
1843 using the pick interaction
1844 (see <xref endterm="Pick.title" linkend="Pick"></xref>)
1845 of the interaction control of the Control Window
1846 (the interaction is described under Interactions).
1847 Groups of
1848 items are best added by using a rubberband to select and draw them in an
1849 unused window temporarily and then by making a copy of the last drawn list.
1850 </para>
1851
1852 <para>
1853 <emphasis>Manipulation of lists</emphasis>
1854 </para>
1855
1856 <para>
1857 Data items and directories may be moved by dragging them to the desired
1858 destination directory. They may be copied by dragging them to the desired
1859 destination directory while holding down the <emphasis>ctrl-key</emphasis>.
1860 Each node has
1861 an associated pop-up menu which may be obtained by right-clicking on its
1862 rectangle or square. The contents of the pop-up menu is node specific and
1863 may contain standard operations such as:
1864
1865 <table frame="topbot" pgwide="0">
1866 <title>Options for the manipulation of lists</title>
1867 <tgroup cols="3">
1868 <colspec colnum="1" colname="colone" colwidth="2*" align="left"></colspec>
1869 <colspec colnum="2" colname="coltwo" colwidth="3*" align="left"></colspec>
1870 <colspec colnum="3" colname="colthree" colwidth="6*" align="left"></colspec>
1871 <thead>
1872 <row rowsep="1">
1873 <entry>Option</entry>
1874 <entry>Node Type</entry>
1875 <entry>Action</entry>
1876 </row>
1877 </thead>
1878 <tbody>
1879 <row rowsep="1">
1880 <entry><emphasis>Remove</emphasis></entry>
1881 <entry>All (except root)</entry>
1882 <entry>Remove the node from the tree</entry>
1883 </row>
1884 <row rowsep="1">
1885 <entry><emphasis>Rename</emphasis></entry>
1886 <entry>Directories</entry>
1887 <entry>Rename the node</entry>
1888 </row>
1889 <row rowsep="1">
1890 <entry><emphasis>New Parent</emphasis></entry>
1891 <entry>All (except root)</entry>
1892 <entry>Add new parent directory (List) above a node</entry>
1893 </row>
1894 <row rowsep="1">
1895 <entry><emphasis>New Child</emphasis></entry>
1896 <entry>Directories</entry>
1897 <entry>Add new child directory (List) below a node</entry>
1898 </row>
1899 <row rowsep="1">
1900 <entry><emphasis>Reset</emphasis></entry>
1901 <entry>Root</entry>
1902 <entry>Reset the Lists removing any user supplied data</entry>
1903 </row>
1904 </tbody>
1905 </tgroup>
1906 </table>
1907 </para>
1908
1909 <para>
1910 or it may contain actions appropiate to the type of data contained by the
1911 node, e.g. <emphasis>Vertex</emphasis> to form a secondary vertex from a
1912 group of three reconstructed tracks.
1913 </para>
1914
1915 <para>
1916 <emphasis>Coloring of lists</emphasis>
1917 </para>
1918
1919 <para>
1920 A color may be associated to a user-defined node and it will be applied as
1921 the default color for all contained child nodes (which are not themselves
1922 given a selected color). Colors are applied by selecting a node as current
1923 and then clicking on the corresponding color icon in the color palette on
1924 the right of the lists window. Two special "colors" which may be associated
1925 are (+) default color or (x) invisible.
1926 </para>
1927
1928 </sect2>
1929
1930 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
1931 <sect2 id="MouseModifiersWindow">
1932 <title id="MouseModifiersWindow.title">3.3.5 Modifier Keys Window</title>
1933
1934 <para>
1935 This pop-up window is activated from the menu of the Control Window and
1936 shows information about various active modifier keys.
1937
1938 <table frame="topbot" pgwide="0">
1939 <title>Modifier keys</title>
1940 <tgroup cols="2">
1941 <colspec colnum="1" colname="modifierkey" colwidth="80" align="left"></colspec>
1942 <colspec colnum="2" colname="action" colwidth="350" align="left"></colspec>
1943 <thead>
1944 <row rowsep="1">
1945 <entry>Modifier Key</entry>
1946 <entry>Action</entry>
1947 </row>
1948 </thead>
1949 <tbody>
1950 <row rowsep="1">
1951 <entry><emphasis>I + right-click</emphasis></entry>
1952 <entry>Interaction Manager pops up</entry>
1953 </row>
1954 <row rowsep="1">
1955 <entry><emphasis>P + right-click</emphasis></entry>
1956 <entry>Projection Menu pops up</entry>
1957 </row>
1958 <row rowsep="1">
1959 <entry><emphasis>W + right-click</emphasis></entry>
1960 <entry>Canvas Pad Menu pops up</entry>
1961 </row>
1962 <row rowsep="1">
1963 <entry><emphasis>right-click</emphasis></entry>
1964 <entry>Interaction Menu pops up</entry>
1965 </row>
1966 <row rowsep="1">
1967 <entry><emphasis> </emphasis></entry>
1968 <entry>Zoom</entry>
1969 </row>
1970 <row rowsep="1">
1971 <entry><emphasis>C</emphasis></entry>
1972 <entry>Change position Central Point</entry>
1973 </row>
1974 <row rowsep="1">
1975 <entry><emphasis>F</emphasis></entry>
1976 <entry>Fast zoom</entry>
1977 </row>
1978 <row rowsep="1">
1979 <entry><emphasis>H</emphasis></entry>
1980 <entry>Horizontal zoom</entry>
1981 </row>
1982 <row rowsep="1">
1983 <entry><emphasis>M</emphasis></entry>
1984 <entry>Move (pan)</entry>
1985 </row>
1986 <row rowsep="1">
1987 <entry><emphasis>R</emphasis></entry>
1988 <entry>Rotate</entry>
1989 </row>
1990 <row rowsep="1">
1991 <entry><emphasis>V</emphasis></entry>
1992 <entry>Vertical zoom</entry>
1993 </row>
1994 <row rowsep="1">
1995 <entry><emphasis>Z</emphasis></entry>
1996 <entry>Zoom</entry>
1997 </row>
1998 </tbody>
1999 </tgroup>
2000 </table>
2001 </para>
2002
2003 </sect2>
2004
2005 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2006 <sect2 id="HelpWindow">
2007 <title id="HelpWindow.title">3.3.6 Help Window</title>
2008
2009 <para>
2010 The help window is a pop-up window that is used to browse the online
2011 documentation pages of the Atlantis Help System
2012 (see <xref linkend="HelpHowTo"></xref>).
2013 </para>
2014
2015 <para>
2016 The window may be opened via the <emphasis>Help→Help Content</emphasis>
2017 menu option of the menu
2018 (see <xref endterm="Menu.title" linkend="Menu"></xref>)
2019 of the Control Window. It starts by showing the Table of Contents.
2020 </para>
2021
2022 <para>
2023 The window may also be opened by <emphasis>right-clicking</emphasis> on a
2024 graphical component.
2025 If the component has a help page attached, this page is shown.
2026 </para>
2027
2028 </sect2>
2029
2030 </sect1>
2031
2032 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2033 <sect1 id="MouseModifierKeys">
2034 <title id="MouseModifierKeys.title">3.4 Modifier Keys</title>
2035
2036 <para>
2037 Modifier keys are combinations of a keyboard key and a mouse key that are
2038 used to generate pop-up menus or to perform interactions. Generally a
2039 keyboard key is kept pressed and during this pressing, a mouse key is
2040 clicked (e.g. to get a pop-up menu) or kept pressed (e.g. zooming).
2041 </para>
2042
2043 <para>
2044 A list of available modifier keys with conditions and actions:
2045
2046 <table frame="topbot" pgwide="0">
2047 <title>Modifier keys and actions</title>
2048 <tgroup cols="3">
2049 <colspec colnum="1" colname="colone" colwidth="2*" align="left"></colspec>
2050 <colspec colnum="2" colname="coltwo" colwidth="6*" align="left"></colspec>
2051 <colspec colnum="3" colname="colthree" colwidth="6*" align="left"></colspec>
2052 <thead>
2053 <row rowsep="1">
2054 <entry>Modifier Key</entry>
2055 <entry>Condition</entry>
2056 <entry>Action</entry>
2057 </row>
2058 </thead>
2059 <tbody>
2060 <row rowsep="1">
2061 <entry><emphasis>left-press</emphasis> only</entry>
2062 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2063 </entry>
2064 <entry>Zoom with respect to the central point (horizontal zoom in the
2065 φ/ρ projection (see <xref endterm="FR.title" linkend="FR"></xref>))
2066 </entry>
2067 </row>
2068 <row rowsep="1">
2069 <entry><emphasis>left-press</emphasis> only</entry>
2070 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2071 3DBox projection active (see <xref endterm="3DBox.title" linkend="3DBox"></xref>)
2072 </entry>
2073 <entry>Change the volume of the box</entry>
2074 </row>
2075 <row rowsep="1">
2076 <entry><emphasis>right-click</emphasis> only</entry>
2077 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2078 </entry>
2079 <entry>Interaction pop-up menu
2080 (see <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>):
2081 interaction dependent operations (e.g. type of rubberband)
2082 </entry>
2083 </row>
2084 <row rowsep="1">
2085 <entry><emphasis>A</emphasis> + <emphasis>left-click</emphasis></entry>
2086 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2087 pick interaction active (see <xref endterm="Pick.title" linkend="Pick"></xref>)
2088 </entry>
2089 <entry>Add the data item to be picked to the currently selected list node
2090 </entry>
2091 </row>
2092 <row rowsep="1">
2093 <entry><emphasis>C</emphasis> + <emphasis>left-click</emphasis></entry>
2094 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2095 pick interaction active (see <xref endterm="Pick.title" linkend="Pick"></xref>)
2096 </entry>
2097 <entry>Clear the highlight list node</entry>
2098 </row>
2099 <row rowsep="1">
2100 <entry><emphasis>C</emphasis> + <emphasis>left-click</emphasis></entry>
2101 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2102 </entry>
2103 <entry>Change position of central point</entry>
2104 </row>
2105 <row rowsep="1">
2106 <entry><emphasis>F</emphasis> + <emphasis>left-press</emphasis></entry>
2107 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2108 </entry>
2109 <entry>Fast zoom with respect to the central point (horizontal zoom
2110 in the φ/ρ projection (see <xref endterm="FR.title" linkend="FR"></xref>));
2111 data are not shown during the zoom
2112 </entry>
2113 </row>
2114 <row rowsep="1">
2115 <entry><emphasis>H</emphasis> + <emphasis>left-click</emphasis></entry>
2116 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2117 pick interaction active (see <xref endterm="Pick.title" linkend="Pick"></xref>)
2118 </entry>
2119 <entry>Highlight, place the data item to be picked in the highlight
2120 list node, causing it to be drawn in white
2121 </entry>
2122 </row>
2123 <row rowsep="1">
2124 <entry><emphasis>H</emphasis> + <emphasis>left-press</emphasis></entry>
2125 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2126 </entry>
2127 <entry>Horizontal zoom with respect to the central point
2128 </entry>
2129 </row>
2130 <row rowsep="1">
2131 <entry><emphasis>H</emphasis> + <emphasis>left-press</emphasis></entry>
2132 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2133 3DBox projection active (see <xref endterm="3DBox.title" linkend="3DBox"></xref>)
2134 </entry>
2135 <entry>Change the length of the box</entry>
2136 </row>
2137 <row rowsep="1">
2138 <entry><emphasis>I</emphasis> + <emphasis>right-click</emphasis></entry>
2139 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2140 </entry>
2141 <entry>Interaction list pop-up menu
2142 (see <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>):
2143 list with available interactions
2144 </entry>
2145 </row>
2146 <row rowsep="1">
2147 <entry><emphasis>M</emphasis> + <emphasis>left-press</emphasis></entry>
2148 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2149 </entry>
2150 <entry>Move (panning)</entry>
2151 </row>
2152 <row rowsep="1">
2153 <entry><emphasis>P</emphasis> + <emphasis>right-click</emphasis></entry>
2154 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2155 </entry>
2156 <entry>Projection pop-up menu
2157 (see <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>);
2158 projection dependent (e.g. restore aspect ratio)
2159 </entry>
2160 </row>
2161 <row rowsep="1">
2162 <entry><emphasis>P</emphasis> + <emphasis>left-press</emphasis></entry>
2163 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2164 synchro cursors active
2165 (see <xref endterm="SynchroCursors.title" linkend="SynchroCursors"></xref>)
2166 </entry>
2167 <entry>Change splitting angle φ and copy it to ρ/Z projection</entry>
2168 </row>
2169 <row rowsep="1">
2170 <entry><emphasis>R</emphasis> + <emphasis>left-press</emphasis></entry>
2171 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2172 </entry>
2173 <entry>Rotate (projection dependent)</entry>
2174 </row>
2175 <row rowsep="1">
2176 <entry><emphasis>R</emphasis> + <emphasis>left-press</emphasis></entry>
2177 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2178 3DBox projection active (see <xref endterm="3DBox.title" linkend="3DBox"></xref>)
2179 </entry>
2180 <entry>Rotate the tracks around the direction of flight of the decaying particle
2181 </entry>
2182 </row>
2183 <row rowsep="1">
2184 <entry><emphasis>V</emphasis> + <emphasis>left-press</emphasis></entry>
2185 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2186 </entry>
2187 <entry>Vertical zoom with respect to the central point</entry>
2188 </row>
2189 <row rowsep="1">
2190 <entry><emphasis>V</emphasis> + <emphasis>left-press</emphasis></entry>
2191 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2192 3DBox projection active (see <xref endterm="3DBox.title" linkend="3DBox"></xref>)
2193 </entry>
2194 <entry>Change the width of the box</entry>
2195 </row>
2196 <row rowsep="1">
2197 <entry><emphasis>W</emphasis> + <emphasis>right-click</emphasis></entry>
2198 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2199 </entry>
2200 <entry>Canvas pad pop-up menu
2201 (see <xref endterm="WindowMenu.title" linkend="WindowMenu"></xref>):
2202 restore canvas pad defaults, rotation, flipping, etc.
2203 </entry>
2204 </row>
2205 <row rowsep="1">
2206 <entry><emphasis>Z</emphasis> + <emphasis>left-press</emphasis></entry>
2207 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>)
2208 </entry>
2209 <entry>Zoom with respect to the central point (horizontal zoom in the
2210 φ/ρ projection
2211 (see <xref endterm="FR.title" linkend="FR"></xref>))
2212 </entry>
2213 </row>
2214 <row rowsep="1">
2215 <entry><emphasis>Z</emphasis> + <emphasis>left-press</emphasis></entry>
2216 <entry>in canvas pad (see <xref endterm="Window.title" linkend="Window"></xref>),
2217 3DBox projection active (see <xref endterm="3DBox.title" linkend="3DBox"></xref>)
2218 </entry>
2219 <entry>Change the volume of the box</entry>
2220 </row>
2221 </tbody>
2222 </tgroup>
2223 </table>
2224 </para>
2225
2226 </sect1>
2227
2228 </chapter>
2229
2230 <!--=======================================================================-->
2231 <chapter id="Interactions">
2232 <title id="Interactions.title">Interactions</title>
2233
2234 <para>
2235 It is very important to understand how interactions work, so you may use the
2236 full power of each. There are two sets of interactions, the interactions that
2237 are sensible for all projections (<emphasis>global interactions</emphasis>)
2238 and the interactions which are only sensible for some specific projections
2239 (<emphasis>projection dependent interactions</emphasis>). As a consequence,
2240 each projection has a specific set of associated interactions represented by
2241 the set of tabs in the Control Window.
2242 </para>
2243
2244 <para>
2245 <emphasis>N.B.:</emphasis> See the detailed information about available
2246 projections in <xref linkend="Projection"></xref>.
2247 </para>
2248
2249 <para>
2250 <emphasis>Global Interactions</emphasis>
2251 </para>
2252
2253 <para>
2254 Interactions that are available in all projections:
2255
2256 <itemizedlist>
2257 <listitem>
2258 <para>
2259 <emphasis>ZMR</emphasis>
2260 (see <xref endterm="ZMR.title" linkend="ZMR"></xref>)
2261 - Zoom, move and/or rotate a picture in a canvas pad.
2262 </para>
2263 </listitem>
2264 <listitem>
2265 <para>
2266 <emphasis>Rubberband</emphasis>
2267 (see <xref endterm="Rubberband.title" linkend="Rubberband"></xref>) -
2268 Different kinds of rubberband selections.
2269 </para>
2270 </listitem>
2271 <listitem>
2272 <para>
2273 <emphasis>Pick</emphasis>
2274 (see <xref endterm="Pick.title" linkend="Pick"></xref>) - Used to pick
2275 an object in one projection and find it in another. Also used to display
2276 information about hits, tracks or detectors.
2277 </para>
2278 </listitem>
2279 <listitem>
2280 <para>
2281 <emphasis>SC</emphasis>
2282 (see <xref endterm="SynchroCursors.title" linkend="SynchroCursors"></xref>) - Synchronised
2283 cursors, used to see the same cursor position in different projections.
2284 </para>
2285 </listitem>
2286 </itemizedlist>
2287 </para>
2288
2289 <para>
2290 <emphasis>Projection Dependent Interactions</emphasis>
2291 </para>
2292
2293 <para>
2294 Interactions that perform operations which only make sense in specific
2295 projections:
2296
2297 <itemizedlist>
2298 <listitem>
2299 <para>
2300 <emphasis>Fisheye</emphasis>
2301 (see <xref endterm="FishEye.title" linkend="FishEye"></xref>) - Available in
2302 Y/X (see <xref endterm="YX.title" linkend="YX"></xref>),
2303 ρ/Z (see <xref endterm="RZ.title" linkend="RZ"></xref>),
2304 φ/ρ (see <xref endterm="FR.title" linkend="FR"></xref>),
2305 φ/Z (see <xref endterm="FZ.title" linkend="FZ"></xref>),
2306 X'/Z (see <xref endterm="XZ.title" linkend="XZ"></xref>),
2307 Y'/Z (see <xref endterm="YZ.title" linkend="YZ"></xref>) and
2308 3D (see <xref endterm="3D.title" linkend="3D"></xref>).
2309 </para>
2310 </listitem>
2311 <listitem>
2312 <para>
2313 <emphasis>Clock</emphasis>
2314 (see <xref endterm="Clock.title" linkend="Clock"></xref>) - Available in
2315 Y/X (see <xref endterm="YX.title" linkend="YX"></xref>) only.
2316 </para>
2317 </listitem>
2318 <listitem>
2319 <para>
2320 <emphasis>Skew</emphasis>
2321 (see <xref endterm="Skew.title" linkend="Skew"></xref>) - Available in
2322 ρ/Z (see <xref endterm="RZ.title" linkend="RZ"></xref>),
2323 φ/ρ (see <xref endterm="FR.title" linkend="FR"></xref>)
2324 and φ/Z (see <xref endterm="FZ.title" linkend="FZ"></xref>).
2325 </para>
2326 </listitem>
2327 <listitem>
2328 <para>
2329 <emphasis>Scale</emphasis>
2330 (see <xref endterm="ScaleCopy.title" linkend="ScaleCopy"></xref>) - Available in
2331 Y/X (see <xref endterm="YX.title" linkend="YX"></xref>),
2332 φ/η (see <xref endterm="VP.title" linkend="VP"></xref>),
2333 ρ/Z (see <xref endterm="RZ.title" linkend="RZ"></xref>),
2334 φ/ρ (see <xref endterm="FR.title" linkend="FR"></xref>),
2335 φ/Z (see <xref endterm="FZ.title" linkend="FZ"></xref>),
2336 X'/Z (see <xref endterm="XZ.title" linkend="XZ"></xref>),
2337 Y'/Z (see <xref endterm="YZ.title" linkend="YZ"></xref>) and
2338 3D (see <xref endterm="3D.title" linkend="3D"></xref>).
2339 </para>
2340 </listitem>
2341 </itemizedlist>
2342 </para>
2343
2344 <para>
2345 <emphasis>Interaction Control</emphasis>
2346 </para>
2347
2348 <para>
2349 Interactions are selected and interaction parameters are modified via the
2350 interaction control
2351 (see <xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>) of the
2352 Control Window.
2353 </para>
2354
2355 <para>
2356 <emphasis>Interaction Pop-up Menus</emphasis>
2357 </para>
2358
2359 <para>
2360 Many interactions have an associated pop-up menu that is invoked for a
2361 picture by <emphasis>right-clicking</emphasis> in the canvas pad.
2362 See <xref endterm="InteractionMenu.title" linkend="InteractionMenu"></xref>.
2363 </para>
2364
2365 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2366 <sect1 id="ZMR">
2367 <title id="ZMR.title">4.1 Zoom/Move/Rotate (ZMR)</title>
2368
2369 <para>
2370 The ZMR interaction allows the user to perform zooming, moving and rotation
2371 of the picture content in a canvas pad
2372 (<xref endterm="Window.title" linkend="Window"></xref>). It is
2373 activated for the current canvas pad by clicking on the ZMR tab of the
2374 interaction control
2375 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
2376 in the Control Window.
2377
2378 <itemizedlist>
2379 <listitem>
2380 <para>
2381 <emphasis>Zoom</emphasis>
2382 </para>
2383 <para>
2384 Zooming is always done with respect to a <emphasis>central point</emphasis>
2385 (<xref endterm="CentralPoint.title" linkend="CentralPoint"></xref>) which
2386 the user can specify. The central point is represented by a small red circle
2387 superimposed on the picture.
2388 </para>
2389 <para>
2390 If you want to perform a zoom operation just drag a point of the picture
2391 inside or outside, increasing or decreasing its distance to the central
2392 point.
2393 </para>
2394 <para>
2395 See the <emphasis>Modifier Key Summary</emphasis> for the different types
2396 of zoom that can be applied.
2397 </para>
2398 </listitem>
2399 <listitem>
2400 <para>
2401 <emphasis>Move</emphasis>
2402 </para>
2403 <para>
2404 You can move (pan) the picture by dragging a point of the picture while
2405 keeping the <emphasis>M</emphasis> key pressed.
2406 </para>
2407 </listitem>
2408 <listitem>
2409 <para>
2410 <emphasis>Rotate</emphasis>
2411 </para>
2412 <para>
2413 Rotation is also done with respect to a <emphasis>central point</emphasis>
2414 (<xref endterm="CentralPoint.title" linkend="CentralPoint"></xref>) which
2415 the user can specify. To obtain a rotation of the picture you drag a point of
2416 the picture around while keeping the <emphasis>R</emphasis> key pressed.
2417 </para>
2418 <para>
2419 Note that rotation is a projection dependent operation:
2420 <itemizedlist>
2421 <listitem>
2422 <para>
2423 <emphasis>Y/X</emphasis> (<xref endterm="YX.title" linkend="YX"></xref>)
2424 - It performs a real rotation around the central point.
2425 </para>
2426 </listitem>
2427 <listitem>
2428 <para>
2429 <emphasis> ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>),
2430 X'/Z (<xref endterm="XZ.title" linkend="XZ"></xref>),
2431 Y'/Z</emphasis> (<xref endterm="YZ.title" linkend="YZ"></xref>)
2432 - It performs a rotation of splitting angle φ or the viewing angle
2433 φ<subscript>
2434 VIEW</subscript>, respectively.
2435 </para>
2436 </listitem>
2437 <listitem>
2438 <para>
2439 <emphasis> φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>),
2440 φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>), φ/η
2441 (<xref endterm="VP.title" linkend="VP"></xref>)</emphasis>
2442 - It performs a shift (up or down) of the φ scale.
2443 </para>
2444 </listitem>
2445 </itemizedlist>
2446 </para>
2447 </listitem>
2448 </itemizedlist>
2449 </para>
2450
2451 <para>
2452 <emphasis>The ZMR Pop-up Menu</emphasis>
2453 </para>
2454
2455 <para>
2456 The ZMR pop-up menu can be accessed by <emphasis>right-clicking</emphasis> in
2457 a canvas window with ZMR applied. It contains the following utility
2458 operations:
2459
2460 <itemizedlist>
2461 <listitem>
2462 <para>
2463 <emphasis>To Center of Detector</emphasis> - Sets the
2464 <emphasis>central point</emphasis>
2465 (<xref endterm="CentralPoint.title" linkend="CentralPoint"></xref>) to
2466 the geometrical center of the detector.
2467 </para>
2468 </listitem>
2469 <listitem>
2470 <para>
2471 <emphasis>Center the Picture</emphasis> - Shifts the picture
2472 in such a way that the
2473 center of the detector coincides with the center of the canvas pad.
2474 </para>
2475 </listitem>
2476 <listitem>
2477 <para>
2478 <emphasis>Unzoom Full</emphasis> - Restores the window to its initial
2479 zoomed state.
2480 </para>
2481 </listitem>
2482 </itemizedlist>
2483 </para>
2484
2485 <para>
2486 <emphasis>Modifier Key Summary</emphasis>
2487
2488 <table frame="topbot" pgwide="0">
2489 <title>Modifier key summary</title>
2490 <tgroup cols="2">
2491 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
2492 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
2493 <thead>
2494 <row rowsep="1">
2495 <entry>Modifier Key</entry>
2496 <entry>Action</entry>
2497 </row>
2498 </thead>
2499 <tbody>
2500 <row rowsep="1">
2501 <entry>None</entry>
2502 <entry><emphasis>Zoom</emphasis> with respect to the central point
2503 (horizontal zoom in the φ/ρ projection
2504 (<xref endterm="FR.title" linkend="FR"></xref>))
2505 </entry>
2506 </row>
2507 <row rowsep="1">
2508 <entry><emphasis>F</emphasis></entry>
2509 <entry><emphasis>Fast Zoom</emphasis> with respect to the central point
2510 (horizontal zoom in the φ/ρ projection
2511 (<xref endterm="FR.title" linkend="FR"></xref>));
2512 data are not updated during the zoom
2513 </entry>
2514 </row>
2515 <row rowsep="1">
2516 <entry><emphasis>H</emphasis></entry>
2517 <entry><emphasis>Horizontal Zoom</emphasis> with respect to the central point
2518 </entry>
2519 </row>
2520 <row rowsep="1">
2521 <entry><emphasis>V</emphasis></entry>
2522 <entry><emphasis>Vertical Zoom</emphasis> with respect to the central point
2523 </entry>
2524 </row>
2525 <row rowsep="1">
2526 <entry><emphasis>M</emphasis></entry>
2527 <entry><emphasis>Move</emphasis> (panning)</entry>
2528 </row>
2529 <row rowsep="1">
2530 <entry><emphasis>R</emphasis></entry>
2531 <entry><emphasis>Rotate</emphasis> (projection dependent)</entry>
2532 </row>
2533 <row rowsep="1">
2534 <entry><emphasis>C</emphasis></entry>
2535 <entry>Change position of <emphasis>central point</emphasis></entry>
2536 </row>
2537 </tbody>
2538 </tgroup>
2539 </table>
2540 </para>
2541
2542 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2543 <sect2 id="CentralPoint">
2544 <title id="CentralPoint.title">4.1.1 Central Point</title>
2545
2546 <para>
2547 The central point is used by the ZMR interaction for zooming (all projections)
2548 and rotation (Y/X projection) in a canvas pad. It is represented as a small
2549 <emphasis>red circle</emphasis> superimposed on the picture.
2550 </para>
2551
2552 <para>
2553 By default the central point is in the center of the detector (0, 0, 0).
2554 There are different ways to change it's position:
2555
2556 <itemizedlist>
2557 <listitem>
2558 <para>
2559 By pressing the <emphasis>C</emphasis> key on the keyboard and the
2560 <emphasis>left</emphasis> mouse button to specify the new center position.
2561 </para>
2562 </listitem>
2563 <listitem>
2564 <para>
2565 By selecting "<emphasis>To Center of Detector</emphasis>" in the ZMR Pop-up
2566 Menu to set the center back to it's initial position (center of the detector).
2567 </para>
2568 </listitem>
2569 </itemizedlist>
2570 </para>
2571
2572 </sect2>
2573
2574 </sect1>
2575
2576 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2577 <sect1 id="Rubberband">
2578 <title id="Rubberband.title">4.2 Rubberband</title>
2579
2580 <para>
2581 The rubberband interaction provides an alternative way of zooming in
2582 Atlantis. Unlike the ZMR interaction
2583 (<xref endterm="ZMR.title" linkend="ZMR"></xref>) you may
2584 exactly specify the region you are interested in by simply drawing a
2585 rubberband around that region. The interaction is activated for the current
2586 canvas pad by clicking on the Rubberband tab of the interaction control
2587 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>) in the
2588 Control Window.
2589 </para>
2590
2591 <para>
2592 If rubberbanding is activated, the panel below the rubberband tab shows a
2593 box from which you may select a rubberband type:
2594
2595 <itemizedlist>
2596 <listitem>
2597 <para>
2598 <emphasis>Rectangle</emphasis>
2599 </para>
2600 <para>
2601 Rectangle is specified by two opposite corners. Sides run parallel to the
2602 projection axes.
2603 </para>
2604 </listitem>
2605 <listitem>
2606 <para>
2607 <emphasis>Rotated Rectangle</emphasis>
2608 </para>
2609 <para>
2610 Rectangle is specified by two middle points of opposite sides. These points
2611 can be moved to change the orientation of the rectangle and the corners can
2612 be moved to increase or decrease the width of the rectangle.
2613 </para>
2614 </listitem>
2615 <listitem>
2616 <para>
2617 <emphasis>Parallelogram</emphasis>
2618 </para>
2619 <para>
2620 Parallelogram is specified by two middle points of opposite sides. These
2621 points can be moved to change the orientation of the parallelogram (the side
2622 with the opposite point remains fixed) and the corners can be moved both to
2623 change the orientation and to increase or decrease the width of the
2624 parallelogram (the two middle points remain fixed).
2625 </para>
2626 </listitem>
2627 <listitem>
2628 <para>
2629 <emphasis>Square</emphasis>
2630 </para>
2631 <para>
2632 Square is specified by the central point and by a corner. Preserves the
2633 aspect ratio of the picture.
2634 </para>
2635 </listitem>
2636 <listitem>
2637 <para>
2638 <emphasis>X Skew</emphasis>
2639 </para>
2640 <para>
2641 As parallelogram but with base side horizontally fixed.
2642 </para>
2643 </listitem>
2644 <listitem>
2645 <para>
2646 <emphasis>Y Skew</emphasis>
2647 </para>
2648 <para>
2649 As parallelogram but with base side vertically fixed.
2650 </para>
2651 </listitem>
2652 <listitem>
2653 <para>
2654 <emphasis>X Slice</emphasis>
2655 </para>
2656 <para>
2657 Vertical slice is specified by points on left and right side.
2658 </para>
2659 </listitem>
2660 <listitem>
2661 <para>
2662 <emphasis>Y Slice</emphasis>
2663 </para>
2664 <para>
2665 Horizontal slice is specified by points on left and right side.
2666 </para>
2667 </listitem>
2668 </itemizedlist>
2669
2670 Draw a rubberband in the current canvas pad by clicking and then
2671 dragging with the left mouse button on the picture. When you release the
2672 mouse button a pop-up menu will appear near your mouse.
2673 </para>
2674
2675 <para>
2676 Now you may re-adjust the rubberband by moving any of its corners or (if
2677 applicable) middle points.
2678 </para>
2679
2680 <para>
2681 There are two options to apply the current rubberband:
2682
2683 <itemizedlist>
2684 <listitem>
2685 <para>
2686 <emphasis>Zoom in the same canvas pad</emphasis>
2687 - Just click the Zoom button of the pop-up menu.
2688 </para>
2689 </listitem>
2690 <listitem>
2691 <para>
2692 <emphasis>Zoom in some other canvas pad</emphasis> - Two options:
2693 <itemizedlist>
2694 <listitem>
2695 <para>
2696 Drag the Zoom button of the pop-up menu into one of the
2697 canvas pads shown in the canvas control
2698 (<xref endterm="WindowControl.title" linkend="WindowControl"></xref>) of the
2699 Control Window.
2700 </para>
2701 </listitem>
2702 <listitem>
2703 <para>
2704 Drag the Zoom button of the pop-up menu into the target
2705 canvas pad directly (in the Canvas). This only works if at least some part
2706 of the target canvas pad is visible on the Canvas.
2707 </para>
2708 </listitem>
2709 </itemizedlist>
2710 </para>
2711 </listitem>
2712 </itemizedlist>
2713 </para>
2714
2715 <para>
2716 <emphasis>Rubberband Pop-up Menu</emphasis>
2717
2718 <table frame="topbot" pgwide="0">
2719 <title>Options of rubberband pop-up menu</title>
2720 <tgroup cols="2">
2721 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
2722 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
2723 <thead>
2724 <row rowsep="1">
2725 <entry>Option</entry>
2726 <entry>Action</entry>
2727 </row>
2728 </thead>
2729 <tbody>
2730 <row rowsep="1">
2731 <entry><emphasis>Zoom</emphasis></entry>
2732 <entry>Zooms the selected region.</entry>
2733 </row>
2734 <row rowsep="1">
2735 <entry><emphasis>New List</emphasis></entry>
2736 <entry>Shows the Lists pop-up window (<xref endterm="Lists.title" linkend="Lists"></xref>).
2737 </entry>
2738 </row>
2739 <row rowsep="1">
2740 <entry><emphasis>Summarize</emphasis></entry>
2741 <entry>Information about the selected objects is displayed in the
2742 output display (<xref endterm="OutputDisplay.title" linkend="OutputDisplay"></xref>)
2743 of the Control Window.
2744 </entry>
2745 </row>
2746 </tbody>
2747 </tgroup>
2748 </table>
2749 </para>
2750
2751 <para>
2752 <emphasis>Unzoom</emphasis>
2753 </para>
2754
2755 <para>
2756 After a rubberband has been applied, you may right-click
2757 in the canvas pad to get a pop-up Unzoom button. Click to undo the zoom.
2758 This works recursively.
2759 </para>
2760
2761 <para>
2762 <emphasis>Unzoom Full</emphasis>
2763 </para>
2764
2765 <para>
2766 After any number of rubberbands have been applied, you may right-click
2767 in the canvas pad to get a pop-up Unzoom Full button. Click to restore
2768 the window to its initial zoomed state.
2769 </para>
2770
2771 <para>
2772 <emphasis>Rubberbanding in YX</emphasis>
2773 </para>
2774
2775 <para>
2776 In the YX (<xref endterm="YX.title" linkend="YX"></xref>) projection
2777 the rectangular rubberband has additional functionality, which is
2778 described in Rubberband in YX Projection
2779 (<xref endterm="RubberbandYX.title" linkend="RubberbandYX"></xref>).
2780 </para>
2781
2782 <para>
2783 <emphasis>Rubberbanding in φ/η</emphasis>
2784 </para>
2785
2786 <para>
2787 In the φ/η (<xref endterm="VP.title" linkend="VP"></xref>) projection
2788 only the rectangular rubberband is available. However in this projection
2789 the rubberbanding has additional functionality, which is described in
2790 Rubberband in φ/η Projection
2791 (<xref endterm="VPSelection.title" linkend="VPSelection"></xref>).
2792 </para>
2793
2794 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2795 <sect2 id="RubberbandYX">
2796 <title id="RubberbandYX.title">4.2.1 Rubberband in YX Projection</title>
2797
2798 <para>
2799 In the YX projection (<xref endterm="YX.title" linkend="YX"></xref>)
2800 the normal rubberband options exist
2801 (<xref endterm="Rubberband.title" linkend="Rubberband"></xref>)
2802 except for the rectangle rubberband. In this projection the rectangle rubberband
2803 has additional functionality which is available as extra options in the pop-up
2804 menu which appears when a rubberbanding operation is complete. These extra options
2805 are described in the following table:
2806
2807 <table frame="topbot" pgwide="0">
2808 <title>Additional rubberbanding options</title>
2809 <tgroup cols="2">
2810 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
2811 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
2812 <thead>
2813 <row rowsep="1">
2814 <entry>Option</entry>
2815 <entry>Action</entry>
2816 </row>
2817 </thead>
2818 <tbody>
2819 <row rowsep="1">
2820 <entry><emphasis>Zoom Summed Endcaps</emphasis></entry>
2821 <entry>Zooms the currently selected region, showing the summed data over each
2822 of layers of the endcaps LAr-, LAr+, HEC-, and HEC+ being shown in canvas pads
2823 1-4, respectively.
2824 </entry>
2825 </row>
2826 <row rowsep="1">
2827 <entry><emphasis>Zoom Endcap Layers -</emphasis></entry>
2828 <entry>Zooms the currently selected region, showing the 8 individual layers of
2829 the LAr and HEC Endcap in the - z region, shown in canvas pads 1-8 with the
2830 zoomed in region of the ρZ view in canvas pad 9.
2831 </entry>
2832 </row>
2833 <row rowsep="1">
2834 <entry><emphasis>Zoom Endcap Layers +</emphasis></entry>
2835 <entry>As <emphasis>Zoom Endcap Layers -</emphasis>, but for the +z region
2836 of the Endcap.
2837 </entry>
2838 </row>
2839 <row rowsep="1">
2840 <entry><emphasis>Zoom Endcap Layers both</emphasis></entry>
2841 <entry>As <emphasis>Zoom Endcap Layers -</emphasis>, but shows hits for both
2842 the +z region and -z region of the Endcap.
2843 </entry>
2844 </row>
2845 </tbody>
2846 </tgroup>
2847 </table>
2848 </para>
2849
2850 <para>
2851 <emphasis>Unzoom Features</emphasis>
2852 </para>
2853
2854 <para>
2855 After a rubberband has been applied, you may right-click in the canvas pad
2856 to get a pop-up menu which will have the normal rubberband features
2857 (<xref endterm="Rubberband.title" linkend="Rubberband"></xref>). There are
2858 also <emphasis>Unzoom Summed</emphasis> and <emphasis>Unzoom Layers</emphasis>.
2859 </para>
2860
2861 <para>
2862 <emphasis>Unzoom Summed</emphasis>
2863 </para>
2864
2865 <para>
2866 After <emphasis>Zoom Summed Endcaps</emphasis> has been applied, you may
2867 right-click in the canvas pad to get a pop-up Unzoom Summed button. Click
2868 to undo the <emphasis>Zoom Summed Endcaps</emphasis>. This works recursively.
2869 </para>
2870
2871 <para>
2872 <emphasis>Unzoom Layers</emphasis>
2873 </para>
2874
2875 <para>
2876 As <emphasis>Unzoom Summed</emphasis> but for when any of
2877 <emphasis>Zoom Endcap Layers -</emphasis>, <emphasis>Zoom Endcap Layers +</emphasis>,
2878 or <emphasis>Zoom Endcap Layers both</emphasis> have been applied.
2879 </para>
2880
2881 </sect2>
2882
2883 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2884 <sect2 id="VPSelection">
2885 <title id="VPSelection.title">4.2.2 Rubberband in φ/η Projection</title>
2886
2887 <para>
2888 In the φ/η projection (<xref endterm="VP.title" linkend="VP"></xref>)
2889 only the rectangular rubberband
2890 (<xref endterm="Rubberband.title" linkend="Rubberband"></xref>)
2891 is available.
2892 However in this projection the rubberbanding has additional functionality
2893 which is available as extra options in the pop-up menu which appears when a
2894 rubberbanding operation is complete. These extra options are described in
2895 the following table:
2896
2897 <table frame="topbot" pgwide="0">
2898 <title>Additional rubberbanding options</title>
2899 <tgroup cols="2">
2900 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
2901 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
2902 <thead>
2903 <row rowsep="1">
2904 <entry>Option</entry>
2905 <entry>Action</entry>
2906 </row>
2907 </thead>
2908 <tbody>
2909 <row rowsep="1">
2910 <entry><emphasis>Zoom LAr</emphasis></entry>
2911 <entry>Zooms the currently selected region, with the four samplings
2912 of the LAr calorimeter being shown in canvas pads 1-4, respectively.
2913 </entry>
2914 </row>
2915 <row rowsep="1">
2916 <entry><emphasis>Zoom Calorimeters</emphasis></entry>
2917 <entry>As <emphasis>Zoom LAr</emphasis>, with additionally the four
2918 samplings of the hadronic calorimeters being shown in canvas
2919 pads 5-8, respectively.
2920 </entry>
2921 </row>
2922 <row rowsep="1">
2923 <entry><emphasis>Cut</emphasis></entry>
2924 <entry>Switch on the φ and η cuts, with the cut region set to
2925 that defined by the rubberband.
2926 If this <emphasis>Cut</emphasis> is dragged into another canvas pad the
2927 projection in that canvas pad is not changed.
2928 </entry>
2929 </row>
2930 <row rowsep="1">
2931 <entry><emphasis>Whole Window</emphasis></entry>
2932 <entry>Sets the current zoom region to correspond to the whole canvas window.
2933 </entry>
2934 </row>
2935 <row rowsep="1">
2936 <entry><emphasis>Print Contents</emphasis></entry>
2937 <entry>A short summary describing the tracks and the calorimetric energy
2938 inside the rubberband region is displayed in the output display
2939 (<xref endterm="OutputDisplay.title" linkend="OutputDisplay"></xref>) of the
2940 Control Window.
2941 </entry>
2942 </row>
2943 </tbody>
2944 </tgroup>
2945 </table>
2946 </para>
2947
2948 <para>
2949 <emphasis>Unzoom Features</emphasis>
2950 </para>
2951
2952 <para>
2953 After a rubberband has been applied, you may right-click in the canvas pad
2954 to get a pop-up menu which will have the normal rubberband features
2955 (<xref endterm="Rubberband.title" linkend="Rubberband"></xref>). There are
2956 also <emphasis>Unzoom LAr</emphasis> and <emphasis>Unzoom Calorimeters</emphasis>.
2957 </para>
2958
2959 <para>
2960 <emphasis>Unzoom LAr</emphasis>
2961 </para>
2962
2963 <para>
2964 After <emphasis>Zoom LAr</emphasis> has been applied, you may
2965 right-click in the canvas pad to get a pop-up Unzoom LAr button. Click
2966 to undo the <emphasis>Zoom LAr</emphasis>. This works recursively.
2967 </para>
2968
2969 <para>
2970 <emphasis>Unzoom Calorimeters</emphasis>
2971 </para>
2972
2973 <para>
2974 As <emphasis>Unzoom LAr</emphasis> but for when
2975 <emphasis>Zoom Calorimeters</emphasis> has been applied.
2976 </para>
2977
2978 </sect2>
2979
2980 </sect1>
2981
2982 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
2983 <sect1 id="Pick">
2984 <title id="Pick.title">4.3 Pick</title>
2985
2986 <para>
2987 The pick interaction has two modes, allowing the selection of either hits
2988 and tracks or detectors. The desired mode is selected from the box on the
2989 panel of the Pick tab in the interaction control
2990 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
2991 of the Control Window.
2992 </para>
2993
2994 <para>
2995 <emphasis>Hits and Tracks</emphasis>
2996 </para>
2997
2998 <para>
2999 If the picking mode is set to hits and tracks:
3000
3001 <itemizedlist>
3002 <listitem>
3003 <para>
3004 Clicking the <emphasis>left mouse button</emphasis> in a
3005 canvas pad will move the cursor to the nearest data item in the window and
3006 will show information about the picked data item on the output display
3007 (<xref endterm="OutputDisplay.title" linkend="OutputDisplay"></xref>) of the
3008 Control Window.
3009 </para>
3010 </listitem>
3011 <listitem>
3012 <para>
3013 Clicking the <emphasis>right mouse button</emphasis> will
3014 move the cursor to the nearest appearance of the previously picked data
3015 item in the canvas pad where the mouse button is pressed. In the case of
3016 <itemizedlist>
3017 <listitem>
3018 <para>
3019 a hit, which is drawn once on a canvas pad, the cursor is
3020 moved to that hit,
3021 </para>
3022 </listitem>
3023 <listitem>
3024 <para>
3025 a hit, which is drawn twice on a canvas pad (V-plot) the
3026 cursor is moved to the closer of the two,
3027 </para>
3028 </listitem>
3029 <listitem>
3030 <para>
3031 a track, the cursor is moved to that point on the track
3032 which is closest to the current cursor position.
3033 </para>
3034 </listitem>
3035 </itemizedlist>
3036 </para>
3037 </listitem>
3038 </itemizedlist>
3039
3040 Any canvas pad in which a mouse button is clicked, is automatically
3041 popped up.
3042 </para>
3043
3044 <para>
3045 <emphasis>Detectors</emphasis>
3046 </para>
3047
3048 <para>
3049 If the picking mode is set to detectors:
3050
3051 <itemizedlist>
3052 <listitem>
3053 <para>
3054 Clicking the <emphasis>left mouse button</emphasis> in a
3055 canvas pad on a detector element will print the name of the element on the
3056 output display (<xref endterm="OutputDisplay.title" linkend="OutputDisplay"></xref>)
3057 of the Control Window.
3058 </para>
3059 </listitem>
3060 </itemizedlist>
3061 </para>
3062
3063 <para>
3064 <emphasis>Lists and Picking</emphasis>
3065 </para>
3066
3067 <para>
3068 The pick interaction may be used for the interactive manipulation of lists
3069 (<xref endterm="Lists.title" linkend="Lists"></xref>) by using a
3070 modifier key while performing the pick. The available modifier keys are:
3071
3072 <table frame="topbot" pgwide="0">
3073 <title>Modifier keys for pick interaction</title>
3074 <tgroup cols="2">
3075 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
3076 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
3077 <thead>
3078 <row rowsep="1">
3079 <entry>Modifier Key</entry>
3080 <entry>Action</entry>
3081 </row>
3082 </thead>
3083 <tbody>
3084 <row rowsep="1">
3085 <entry><emphasis>A</emphasis> + <emphasis>left-click</emphasis></entry>
3086 <entry><emphasis>Add</emphasis> the data item to be picked to the currently
3087 selected list node
3088 </entry>
3089 </row>
3090
3091 <row rowsep="1">
3092 <entry><emphasis>C</emphasis> + <emphasis>left-click</emphasis></entry>
3093 <entry><emphasis>Clear highlighted</emphasis>, colours the previously picked
3094 data item with its default colour
3095 </entry>
3096 </row>
3097
3098 <row rowsep="1">
3099 <entry><emphasis>I</emphasis> + <emphasis>left-click</emphasis></entry>
3100 <entry><emphasis>Ignore</emphasis>, picked item is moved into the
3101 <emphasis>invisible</emphasis> list under List manager and is ignored
3102 unless removed from this list or list manager is re-set, useful to mask
3103 hot calo cells for instance
3104 </entry>
3105 </row>
3106
3107 <row rowsep="1">
3108 <entry><emphasis>V</emphasis> + <emphasis>left-click</emphasis></entry>
3109 <entry><emphasis>Set primary vertex</emphasis>, if picked item is simulated
3110 vertex (SimVertex) or reconstructed vertex (RecVertex), the position of
3111 the picked vertex is considered by Atlantis the primary vertex
3112 (see Projections→η/φ projection menu)
3113 </entry>
3114 </row>
3115
3116 </tbody>
3117 </tgroup>
3118 </table>
3119 </para>
3120
3121 </sect1>
3122
3123 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3124 <sect1 id="SynchroCursors">
3125 <title id="SynchroCursors.title">4.4 Synchro Cursors</title>
3126
3127 <para>
3128 If different projections are visible simultaneously in separate canvas
3129 windows, then synchro cursors show the same cursor position in all
3130 projections. Syncro cursors are activated by clicking on the SC tab of
3131 the interaction control in the Control Window.
3132 </para>
3133
3134 <para>
3135 Now simply click in a canvas pad with the left mouse key and, while
3136 keeping the key pressed, move around in the canvas pad to see the
3137 synchro cursor follow the cursor position. The synchro cursors in the
3138 other canvas pads follow the leading synchro cursor. The synchro cursor
3139 in any canvas pad may be used as leading cursor.
3140 </para>
3141
3142 <para>
3143 The concept is simple: a 3D point defined by (φ,η,ρ) in one
3144 projection is shown in all other projections by conversion to the appropriate
3145 coordinates. This is rigorously applied if the pointer is moved in the
3146 φ/η projection. Otherwise only those coordinates are shown,
3147 which are modified in the projection according to the table below:
3148
3149 <table frame="topbot" pgwide="0">
3150 <title>Coordinates affected by synchro cursors</title>
3151 <tgroup cols="7">
3152 <colspec colnum="1" colname="colone" colwidth="60" align="left"></colspec>
3153 <colspec colnum="2" colname="coltwo" colwidth="50" align="left"></colspec>
3154 <colspec colnum="3" colname="colthree" colwidth="50" align="left"></colspec>
3155 <colspec colnum="4" colname="colfour" colwidth="50" align="left"></colspec>
3156 <colspec colnum="5" colname="colfive" colwidth="50" align="left"></colspec>
3157 <colspec colnum="6" colname="colsix" colwidth="50" align="left"></colspec>
3158 <colspec colnum="7" colname="colseven" colwidth="50" align="left"></colspec>
3159 <thead>
3160 <row rowsep="1">
3161 <entry>Pointer</entry>
3162 <entry>Displayed</entry>
3163 <entry></entry>
3164 <entry></entry>
3165 <entry></entry>
3166 <entry></entry>
3167 <entry></entry>
3168 </row>
3169 </thead>
3170 <tbody>
3171 <row rowsep="1">
3172 <entry>moved in</entry>
3173 <entry>ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>)</entry>
3174 <entry>Y/X (<xref endterm="YX.title" linkend="YX"></xref>)</entry>
3175 <entry>φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>)</entry>
3176 <entry>φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)</entry>
3177 <entry>φ/η (<xref endterm="VP.title" linkend="VP"></xref>)</entry>
3178 <entry>X'/Z (<xref endterm="XZ.title" linkend="XZ"></xref>)</entry>
3179 </row>
3180 <row rowsep="1">
3181 <entry>ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>)</entry>
3182 <entry>ρ,Z,η</entry>
3183 <entry>ρ</entry>
3184 <entry>ρ</entry>
3185 <entry>Z</entry>
3186 <entry>η</entry>
3187 <entry>Z</entry>
3188 </row>
3189 <row rowsep="1">
3190 <entry>Y/X (<xref endterm="YX.title" linkend="YX"></xref>)</entry>
3191 <entry>ρ</entry>
3192 <entry>φ,ρ</entry>
3193 <entry>φ,ρ</entry>
3194 <entry>φ</entry>
3195 <entry>φ</entry>
3196 <entry></entry>
3197 </row>
3198 <row rowsep="1">
3199 <entry>φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>)</entry>
3200 <entry>ρ</entry>
3201 <entry>φ,ρ</entry>
3202 <entry>φ,ρ</entry>
3203 <entry>φ</entry>
3204 <entry>φ</entry>
3205 <entry></entry>
3206 </row>
3207 <row rowsep="1">
3208 <entry>φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)</entry>
3209 <entry>Z</entry>
3210 <entry>φ</entry>
3211 <entry>φ</entry>
3212 <entry>φ,Z</entry>
3213 <entry>φ</entry>
3214 <entry>Z</entry>
3215 </row>
3216 <row rowsep="1">
3217 <entry>φ/η (<xref endterm="VP.title" linkend="VP"></xref>)</entry>
3218 <entry>Z,ρ <superscript>*</superscript></entry>
3219 <entry>φ,ρ<superscript>*</superscript></entry>
3220 <entry>φ,ρ<superscript>*</superscript></entry>
3221 <entry>φ,Z<superscript>**</superscript></entry>
3222 <entry>φ,η</entry>
3223 <entry>?</entry>
3224 </row>
3225 <row rowsep="1">
3226 <entry>X'/Z (<xref endterm="XZ.title" linkend="XZ"></xref>)</entry>
3227 <entry>Z</entry>
3228 <entry></entry>
3229 <entry></entry>
3230 <entry>Z</entry>
3231 <entry></entry>
3232 <entry>Z</entry>
3233 </row>
3234 </tbody>
3235 </tgroup>
3236 </table>
3237
3238 <superscript>*</superscript> Current ρ is used.
3239 </para>
3240
3241 <para>
3242 <superscript>**</superscript> Current ρ is used to calculate Z.
3243 </para>
3244
3245 <para>
3246 <emphasis>Setting the splitting angle in ρ/Z</emphasis>
3247 </para>
3248
3249 <para>
3250 A special feature of the synchro cursors interaction is to set the angle
3251 <emphasis>φ<subscript>ρZ</subscript></emphasis> of the ρ/Z
3252 (<xref endterm="RZ.title" linkend="RZ"></xref>) projection from any
3253 other projection which defines φ. This transfer of φ information is
3254 performed by keeping modifier key <emphasis>P</emphasis> pressed while the
3255 cursor is being moved in a φ defining projection. This is particularly
3256 useful when the φ defining projection is taken to be Y/X
3257 (<xref endterm="YX.title" linkend="YX"></xref>) as in this case
3258 all data in one Y/X hemisphere are shown on the upper half of the ρ/Z
3259 projection while all data in the other Y/X hemisphere are shown on the lower
3260 half of the ρ/Z projection.
3261 </para>
3262
3263 </sect1>
3264
3265 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3266 <sect1 id="FishEye">
3267 <title id="FishEye.title">4.5 Fisheye</title>
3268
3269 <para>
3270 If the calorimeters and the muon detectors are drawn in, e.g. the
3271 Y/X projection
3272 (<xref endterm="YX.title" linkend="YX"></xref>), the inner
3273 tracking chambers are so small that track recognition may suffer.
3274 This problem may be partially solved by applying a fisheye transformation,
3275 which allows a relative magnification of the inner chambers without
3276 increasing the outer radius. Besides, since the outer parts of the detector
3277 are in sight, tracks are still completely visible.
3278 </para>
3279
3280 <para>
3281 A fisheye transformation is available in most projections:
3282
3283 <itemizedlist>
3284 <listitem>
3285 <para>
3286 <emphasis>Y/X, φ/ρ and ρ/Z projections</emphasis>
3287 </para>
3288 <para>
3289 When ρ (√(X<superscript>2</superscript>+Y<superscript>2</superscript>))
3290 is known in a projection (namely Y/X
3291 (<xref endterm="YX.title" linkend="YX"></xref>), φ/ρ
3292 (<xref endterm="FR.title" linkend="FR"></xref>) and ρ/Z
3293 (<xref endterm="RZ.title" linkend="RZ"></xref>)), it is modified as:
3294 </para>
3295 <para>
3296 ρ<subscript>new</subscript> = ρ ×
3297 (1+<emphasis>d</emphasis>×<emphasis>ρ<subscript>max</subscript></emphasis>) /
3298 (1+<emphasis>d</emphasis>×ρ)
3299 </para>
3300 <para>
3301 where <emphasis>ρ<subscript>max</subscript></emphasis> is the outer
3302 radius and <emphasis>d</emphasis> the fisheye distortion factor.
3303 </para>
3304 <para>
3305 In Y/X (<xref endterm="YX.title" linkend="YX"></xref>) the
3306 azimuthal angle is unchanged and X<subscript>new</subscript>, Y<subscript>new</subscript>
3307 are calculated from φ and ρ<subscript>new</subscript>, in φ/ρ
3308 (<xref endterm="FR.title" linkend="FR"></xref>)
3309 the azimuthal angle φ is unchanged.
3310 </para>
3311 <para>
3312 In the case of the ρ/Z
3313 (<xref endterm="RZ.title" linkend="RZ"></xref>) projection the
3314 value of Z is changed according to the formula:
3315 </para>
3316 <para>
3317 Z<subscript>new</subscript> = Z ×
3318 (1+<emphasis>d</emphasis>×<emphasis>Z<subscript>max</subscript></emphasis>) /
3319 (1+<emphasis>d</emphasis>×Z)
3320 </para>
3321 <para>
3322 where <emphasis>Z<subscript>max</subscript></emphasis> is the outer Z range.
3323 In this projection, radial tracks are slightly curved by the fisheye.
3324 </para>
3325 </listitem>
3326 <listitem>
3327 <para>
3328 <emphasis>Other projections</emphasis>
3329 </para>
3330 <para>
3331 In all other projections where the fisheye is available, the axes
3332 representing distance are transformed with the formula used to transform Z
3333 in the ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>) projection.
3334 </para>
3335 </listitem>
3336 </itemizedlist>
3337 </para>
3338
3339 <para>
3340 <emphasis>Applying the Fisheye Transformation</emphasis>
3341 </para>
3342
3343 <para>
3344 The fisheye interaction is selected for the current canvas pad by
3345 clicking on the Fisheye tab of the interaction control
3346 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
3347 in the Control Window. The label of the tab contains a toggle to activate
3348 and deactivate the fisheye and a box with the value of the distortion factor
3349 <emphasis>d</emphasis>. This value is modified by clicking the left mouse
3350 button and dragging the cursor over the picture. If the <emphasis>F</emphasis>
3351 modifier key is pressed while dragging, the data will not be updated, thus
3352 allowing for better response.
3353 </para>
3354
3355 <para>
3356 <emphasis>The Fisheye Pop-up Menu</emphasis>
3357 </para>
3358
3359 <para>
3360 The Fisheye Pop-up Menu can be accessed by right-clicking into the desired
3361 canvas pad. It contains the following set of utility operations:
3362
3363 <itemizedlist>
3364 <listitem>
3365 <para>
3366 <emphasis>Set no Fisheye</emphasis>
3367 - Switch off the fisheye interaction.
3368 </para>
3369 </listitem>
3370 <listitem>
3371 <para>
3372 <emphasis>To Window Radius</emphasis>
3373 - Not implemented yet.
3374 </para>
3375 </listitem>
3376 </itemizedlist>
3377 </para>
3378
3379 </sect1>
3380
3381 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3382 <sect1 id="Clock">
3383 <title id="Clock.title">4.6 Clock</title>
3384
3385 <para>
3386 The clock transformation is an angular fisheye transformation which allows a
3387 selected azimuthal region to be shown in detail while still displaying the
3388 full 360°. It is only available in the Y/X projection
3389 (<xref endterm="YX.title" linkend="YX"></xref>).
3390 </para>
3391
3392 <para>
3393 Under a clock transformation about an axis φ<subscript>0</subscript>,
3394 φ transforms to φ<subscript>new</subscript> with:
3395 </para>
3396
3397 <para>
3398 φ<subscript>new</subscript> = φ<subscript>0</subscript> +
3399 ((π/<emphasis>d</emphasis>)×Δφ) /
3400 ((π/<emphasis>d</emphasis>)+π-|Δφ|)
3401 </para>
3402
3403 <para>
3404 where <emphasis>d</emphasis> is the clock distortion factor and
3405 Δφ=φ-φ<subscript>0</subscript>.
3406 The clock transformation does not change ρ.
3407 The values of X<subscript>new</subscript>, Y<subscript>new</subscript> are
3408 calculated from ρ and φ<subscript>new</subscript>.
3409 </para>
3410
3411 <para>
3412 <emphasis>Applying the Clock Transformation</emphasis>
3413 </para>
3414
3415 <para>
3416 The clock interaction is selected for the current canvas pad by
3417 clicking on the Clock tab of the interaction control
3418 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
3419 in the Control Window. The label of the tab contains a toggle to activate
3420 and deactivate the interaction. Upon activation the distortion factor
3421 <emphasis>d</emphasis> is modified by clicking on a point at a selected
3422 opening angle with respect to the φ<subscript>0</subscript> direction
3423 and dragging it to a larger or smaller opening angle.
3424 </para>
3425
3426 <para>
3427 When the clock interaction is selected, a white line appears over the picture
3428 representing the selected φ<subscript>0</subscript> direction around
3429 which to perform the angular fisheye. This φ axis may be rotated by
3430 dragging it with the mouse.
3431 </para>
3432
3433 </sect1>
3434
3435 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3436 <sect1 id="Skew">
3437 <title id="Skew.title">4.7 Skew</title>
3438
3439 <para>
3440 The skew interaction is activated for the current canvas pad by
3441 clicking on the Skew tab of the interaction control
3442 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
3443 in the Control Window. It is available in the
3444 ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>),
3445 φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>) and
3446 φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)
3447 projections.
3448 However, in the φ/ρ, φ/Z it is only available when a small
3449 region of the total azimuthal angle has been selected.
3450 </para>
3451
3452 <para>
3453 <emphasis>The Skew Pop-up Menu</emphasis>
3454 </para>
3455
3456 <para>
3457 The Skew Pop-up Menu can be accessed by right-clicking into the desired
3458 canvas pad. It contains the following set of utility operations:
3459
3460 <itemizedlist>
3461 <listitem>
3462 <para>
3463 <emphasis>Set no skew</emphasis>
3464 - Switch off the skew interaction.
3465 (doesn't work for ρ/Z: BUG!)
3466 </para>
3467 </listitem>
3468 </itemizedlist>
3469 </para>
3470
3471 </sect1>
3472
3473 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3474 <sect1 id="ScaleCopy">
3475 <title id="ScaleCopy.title">4.8 Scale</title>
3476
3477 <para>
3478 The skew interaction is activated for the current canvas pad by
3479 clicking on the Scale tab of the interaction control
3480 (<xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
3481 in the Control Window.
3482 </para>
3483
3484 <para>
3485 The scale interaction allows the copying of φ or Z scales between
3486 projections. After activating the scale interaction, a scale may be copied
3487 by dragging it from the source window into the target window. A φ-scale
3488 copy will only work between two projections which have their vertical axes
3489 representing φ. A Z-scale copy will only work between two projections
3490 which have their horizontal axes representing Z.
3491 </para>
3492
3493 <para>
3494 The scale interaction does not have a pop-up menu.
3495 </para>
3496
3497 </sect1>
3498
3499 </chapter>
3500
3501 <!--=======================================================================-->
3502 <chapter id="Projection">
3503 <title id="Projection.title">Projections</title>
3504
3505 <para>
3506 <emphasis>Available Projections</emphasis>
3507 </para>
3508
3509 <para>
3510 The projections that are available in Atlantis are data oriented, that is,
3511 they are adapted to the cylindrical structure of helices and of the ATLAS
3512 detector. The following projections are available:
3513
3514 <itemizedlist>
3515 <listitem>
3516 <para>
3517 <emphasis>Linear projections</emphasis>
3518 <itemizedlist>
3519 <listitem>
3520 <para>
3521 The <emphasis>Y/X projection</emphasis> (<xref endterm="YX.title" linkend="YX"></xref>)
3522 looking along the beam axis.
3523 </para>
3524 </listitem>
3525 <listitem>
3526 <para>
3527 The <emphasis>X'/Z projection</emphasis>
3528 (<xref endterm="XZ.title" linkend="XZ"></xref>)
3529 looking perpendicular to the beam axis. The angle around the axis may
3530 be changed.
3531 </para>
3532 </listitem>
3533 <listitem>
3534 <para>
3535 The <emphasis>Y'/Z projection</emphasis>
3536 (<xref endterm="YZ.title" linkend="YZ"></xref>)
3537 looking perpendicular to the beam axis and perpendicular to X'Z.
3538 The angle around the axis may be changed.
3539 </para>
3540 </listitem>
3541 </itemizedlist>
3542 </para>
3543 </listitem>
3544 <listitem>
3545 <para>
3546 <emphasis>Non-linear projections</emphasis>
3547 <itemizedlist>
3548 <listitem>
3549 <para>
3550 The <emphasis>ρ/Z projection</emphasis>
3551 (<xref endterm="RZ.title" linkend="RZ"></xref>),
3552 which is intuitively understandable.
3553 </para>
3554 </listitem>
3555 </itemizedlist>
3556 </para>
3557 </listitem>
3558 <listitem>
3559 <para>
3560 <emphasis>Expert non-linear projections</emphasis>
3561 <itemizedlist>
3562 <listitem>
3563 <para>
3564 The <emphasis>φ/ρ projection</emphasis>
3565 (<xref endterm="FR.title" linkend="FR"></xref>).
3566 </para>
3567 </listitem>
3568 <listitem>
3569 <para>
3570 The <emphasis>φ/Z projection</emphasis>
3571 (<xref endterm="FZ.title" linkend="FZ"></xref>).
3572 </para>
3573 </listitem>
3574 <listitem>
3575 <para>
3576 The <emphasis>φ/η projection</emphasis>
3577 (<xref endterm="VP.title" linkend="VP"></xref>),
3578 of which the V-plot is a special form.
3579 </para>
3580 </listitem>
3581 </itemizedlist>
3582 </para>
3583 </listitem>
3584 <listitem>
3585 <para>
3586 <emphasis>Special projections</emphasis>
3587 <itemizedlist>
3588 <listitem>
3589 <para>
3590 The <emphasis>3D projection</emphasis>
3591 (<xref endterm="3D.title" linkend="3D"></xref>).
3592 </para>
3593 </listitem>
3594 <listitem>
3595 <para>
3596 The <emphasis>3DBox projection</emphasis>
3597 (<xref endterm="3DBox.title" linkend="3DBox"></xref>).
3598 </para>
3599 </listitem>
3600 <listitem>
3601 <para>
3602 The <emphasis>Lego Plot</emphasis>
3603 (<xref endterm="LegoPlot.title" linkend="LegoPlot"></xref>).
3604 </para>
3605 </listitem>
3606 </itemizedlist>
3607 </para>
3608 </listitem>
3609 </itemizedlist>
3610 </para>
3611
3612 <para>
3613 <emphasis>Selection of Projections</emphasis>
3614 </para>
3615
3616 <para>
3617 A projection is selected via the Parameter Control
3618 (<xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>) of the
3619 Control Window or via the projection pop-up menu
3620 (<xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>).
3621 </para>
3622
3623 <para>
3624 <emphasis>Projections and Data</emphasis>
3625 </para>
3626
3627 <para>
3628 In the program a distinction is made for data in 3D space between
3629 <emphasis>space points</emphasis> (e.g. silicon hits) and
3630 <emphasis>space lines</emphasis> (e.g. straws from the TRT).
3631 </para>
3632
3633 <para>
3634 All projections may be used for both types of data.
3635 However, space lines are best viewed in the following projections:
3636
3637 <table frame="topbot" pgwide="0">
3638 <title>Display of space lines</title>
3639 <tgroup cols="2">
3640 <colspec colnum="1" colname="colone" colwidth="130" align="left"></colspec>
3641 <colspec colnum="2" colname="coltwo" colwidth="300" align="left"></colspec>
3642 <thead>
3643 <row rowsep="1">
3644 <entry>Projection</entry>
3645 <entry>Space line</entry>
3646 </row>
3647 </thead>
3648 <tbody>
3649 <row rowsep="1">
3650 <entry>Y/X (<xref endterm="YX.title" linkend="YX"></xref>)</entry>
3651 <entry>TRT, LAr and TILE barrels, RPC φ-strips, vertex region (intuitive view)
3652 </entry>
3653 </row>
3654 <row rowsep="1">
3655 <entry>φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>)</entry>
3656 <entry>TRT, LAr and TILE barrels, RPC φ-strips, tracks are straight lines
3657 </entry>
3658 </row>
3659 <row rowsep="1">
3660 <entry>ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>)</entry>
3661 <entry>Barrel and endcap calorimeters; approximate extrapolation to all
3662 MDT, RPC z-strips and TGC ρ-strips superimposed
3663 </entry>
3664 </row>
3665 <row rowsep="1">
3666 <entry>X'/Z (<xref endterm="XZ.title" linkend="XZ"></xref>)</entry>
3667 <entry>MDT, RPC z-strips and TGC ρ-strips, vertex region (intuitive view)</entry>
3668 </row>
3669 <row rowsep="1">
3670 <entry>Y'/Z (<xref endterm="YZ.title" linkend="YZ"></xref>)</entry>
3671 <entry>Vertex region, orthogonal view with respect to X'/Z projection</entry>
3672 </row>
3673 <row rowsep="1">
3674 <entry>φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)</entry>
3675 <entry>TRT endcaps, calorimeter endcaps and TGC φ-strips</entry>
3676 </row>
3677 <row rowsep="1">
3678 <entry>φ/η (<xref endterm="VP.title" linkend="VP"></xref>)</entry>
3679 <entry>Calorimeters, and their association to tracks and S3D hits</entry>
3680 </row>
3681 <row rowsep="1">
3682 <entry>3DBox (<xref endterm="3DBox.title" linkend="3DBox"></xref>)</entry>
3683 <entry>Shows tracks near the primary vertex to investigate secondary vertices
3684 </entry>
3685 </row>
3686 </tbody>
3687 </tgroup>
3688 </table>
3689 </para>
3690
3691 <para>
3692 <emphasis>Projections and Magnetic Field</emphasis>
3693 </para>
3694
3695 <para>
3696 Depending on the projection and the type of magnetic field, tracks of charged
3697 particles will be more or less straight. The following table gives an overview:
3698
3699 <table frame="topbot" pgwide="0">
3700 <title>Shape of trajectories in magnetic fields</title>
3701 <tgroup cols="5">
3702 <colspec colnum="1" colname="colone" colwidth="70" align="left"></colspec>
3703 <colspec colnum="2" colname="coltwo" colwidth="80" align="left"></colspec>
3704 <colspec colnum="3" colname="colthree" colwidth="80" align="left"></colspec>
3705 <colspec colnum="4" colname="colfour" colwidth="80" align="left"></colspec>
3706 <colspec colnum="5" colname="colfive" colwidth="80" align="left"></colspec>
3707 <thead>
3708 <row rowsep="1">
3709 <entry></entry>
3710 <entry>Y/X</entry>
3711 <entry>φ/ρ</entry>
3712 <entry>φ/Z</entry>
3713 <entry>ρ/Z</entry>
3714 </row>
3715 </thead>
3716 <tbody>
3717 <row rowsep="1">
3718 <entry>Solenoidal</entry>
3719 <entry>curved</entry>
3720 <entry>curved</entry>
3721 <entry>curved</entry>
3722 <entry>∼straight</entry>
3723 </row>
3724 <row rowsep="1">
3725 <entry>Toroidal</entry>
3726 <entry>∼straight</entry>
3727 <entry>∼straight</entry>
3728 <entry>∼straight</entry>
3729 <entry>curved</entry></row>
3730 </tbody>
3731 </tgroup>
3732 </table>
3733 </para>
3734
3735 <para>
3736 <emphasis>Checking the Tracking</emphasis>
3737 </para>
3738
3739 <para>
3740 In the Y/X (<xref endterm="YX.title" linkend="YX"></xref>),
3741 φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>) and
3742 φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)
3743 projections tracks are seen from the side of maximum curvature. In the
3744 ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>) projection
3745 they are seen from the "orthogonal" side, i.e. the side of minimum curvature.
3746 Therefore ρ/Z is said to be orthogonal to Y/X, φ/ρ and φ/Z.
3747 </para>
3748
3749 <para>
3750 In order to check in space if a track passes through a set of 3D hits or
3751 if it points to a set of calorimeter hits the hits and the track must be
3752 displayed in at least two 2-dimensional projections which are orthogonal
3753 to each other i.e. in ρ/Z and in one of the projections Y/X,
3754 φ/ρ or φ/Z.
3755 </para>
3756
3757 <para>
3758 Instead of using a pair of projections the 3-dimensional
3759 V-plot (<xref endterm="RZ.title" linkend="RZ"></xref>)
3760 is sufficient to check pattern recognition and track extrapolation.
3761 </para>
3762
3763 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3764 <sect1 id="YX">
3765 <title id="YX.title">5.1 Y/X Projection</title>
3766
3767 <para>
3768 The Y/X projection presents an intuitively understandable picture of data
3769 with a precise Y/X measurement. This projection may be used to view 3D
3770 tracks and hits and to associate them to data in the TRT, LAr and TILE
3771 barrels, and to the RPC φ-strips. All other data would appear as lines.
3772 In this projection the momentum of tracks may be estimated form the curvature.
3773 This projection also provides an intuitively understandable view of the
3774 region around the primary vertex.
3775 </para>
3776
3777 <para>
3778 In the standard view of the Y/X projection, data from the calorimeter and
3779 muon detector endcaps are <emphasis>not</emphasis> displayed (in order not to
3780 complicate the picture) as they would fall on top of data from the
3781 tracking chambers or data from the calorimeter barrel.
3782 </para>
3783
3784 <para>
3785 Alternatively, the <emphasis>view</emphasis> parameter may be used to select
3786 a single layer of the muon detector endcaps
3787 (<xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>).
3788 In this case, the <emphasis>TGC Gas Gap</emphasis> parameter may be used
3789 to further select data from only a given sublayer of the detector.
3790 </para>
3791
3792 <para>
3793 The Y/X projection is special in that it allows both the particle's charge
3794 and P<subscript>
3795 t</subscript> to be estimated from the track curvature.
3796 </para>
3797
3798 <para>
3799 Even with <emphasis>fisheye</emphasis>
3800 (<xref endterm="FishEye.title" linkend="FishEye"></xref>) the inner
3801 layers of the pixel detector fall on rather small circles, which do not
3802 take into account the high resolution of the pixel detector.
3803 The pixel data are better visualised in the φ/ρ projection
3804 (<xref endterm="FR.title" linkend="FR"></xref>).
3805 </para>
3806
3807 <para>
3808 The orthogonal projection to Y/X is the ρ/Z projection
3809 (<xref endterm="RZ.title" linkend="RZ"></xref>).
3810 </para>
3811
3812 <para>
3813 <emphasis>The Y/X Projection Menu
3814 (see <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>)</emphasis>
3815
3816 <itemizedlist>
3817 <listitem>
3818 <para>
3819 <emphasis>Aspect Ratio 1</emphasis>
3820 - Sets the aspect ratio (width/height) of the
3821 picture to 1. The operation ensures that the original picture which was
3822 in the window does not go outside the window.
3823 </para>
3824 </listitem>
3825 </itemizedlist>
3826 </para>
3827
3828 <para>
3829 <emphasis>Parameters</emphasis>
3830
3831 <itemizedlist>
3832 <listitem>
3833 <para><emphasis>View</emphasis></para>
3834 <para>Select the data type, choice between:
3835 <itemizedlist>
3836 <listitem>
3837 <para><emphasis>Standard</emphasis> (default)</para>
3838 </listitem>
3839 <listitem>
3840 <para><emphasis>TGC Inner 1</emphasis></para>
3841 </listitem>
3842 <listitem>
3843 <para><emphasis>TGC Middle 1</emphasis></para>
3844 </listitem>
3845 <listitem>
3846 <para><emphasis>TGC Middle 2</emphasis></para>
3847 </listitem>
3848 <listitem>
3849 <para><emphasis>TGC Middle 3</emphasis></para>
3850 </listitem>
3851 <listitem>
3852 <para><emphasis>MDT/CSC Inner</emphasis></para>
3853 </listitem>
3854 <listitem>
3855 <para><emphasis>MDT Extension</emphasis></para>
3856 </listitem>
3857 <listitem>
3858 <para><emphasis>MDT Middle</emphasis></para>
3859 </listitem>
3860 <listitem>
3861 <para><emphasis>FCAL EM</emphasis></para>
3862 </listitem>
3863 <listitem>
3864 <para><emphasis>FCAL HAD 1</emphasis></para>
3865 </listitem>
3866 <listitem>
3867 <para><emphasis>FCAL HAD 2</emphasis></para>
3868 </listitem>
3869 <listitem>
3870 <para><emphasis>LAr Endcap Presampler</emphasis></para>
3871 </listitem>
3872 <listitem>
3873 <para><emphasis>LAr Endcap 1 (outer wheel 1)</emphasis></para>
3874 </listitem>
3875 <listitem>
3876 <para><emphasis>LAr Endcap 2 (outer wheel 2, inner wheel 1)</emphasis></para>
3877 </listitem>
3878 <listitem>
3879 <para><emphasis>LAr Endcap 3 (outer wheel 3, inner wheel 2)</emphasis></para>
3880 </listitem>
3881 <listitem>
3882 <para><emphasis>HEC 1</emphasis></para>
3883 </listitem>
3884 <listitem>
3885 <para><emphasis>HEC 2</emphasis></para>
3886 </listitem>
3887 <listitem>
3888 <para><emphasis>HEC 3</emphasis></para>
3889 </listitem>
3890 <listitem>
3891 <para><emphasis>HEC 4</emphasis></para>
3892 </listitem>
3893 <listitem>
3894 <para><emphasis>LAr Summed</emphasis></para>
3895 </listitem>
3896 <listitem>
3897 <para><emphasis>HEC Summed</emphasis></para>
3898 </listitem>
3899 <listitem>
3900 <para><emphasis>MBTS</emphasis></para>
3901 </listitem>
3902 </itemizedlist>
3903 </para>
3904 </listitem>
3905 <listitem>
3906 <para><emphasis>Summed LAr binning</emphasis></para>
3907 <para>Select the data type, choice between:
3908 <itemizedlist>
3909 <listitem>
3910 <para><emphasis>0.1x0.1</emphasis> (default)</para>
3911 </listitem>
3912 <listitem>
3913 <para><emphasis>0.2x0.2</emphasis></para>
3914 </listitem>
3915 <listitem>
3916 <para><emphasis>split</emphasis></para>
3917 </listitem>
3918 </itemizedlist>
3919 </para>
3920 </listitem>
3921 <listitem>
3922 <para><emphasis>Summed HEC binning</emphasis></para>
3923 <para>Select the data type, choice between:
3924 <itemizedlist>
3925 <listitem>
3926 <para><emphasis>0.1x0.1</emphasis></para>
3927 </listitem>
3928 <listitem>
3929 <para><emphasis>0.2x0.2</emphasis> (default)</para>
3930 </listitem>
3931 <listitem>
3932 <para><emphasis>split</emphasis></para>
3933 </listitem>
3934 </itemizedlist>
3935 </para>
3936 </listitem>
3937 <listitem>
3938 <para><emphasis>Eta of split binning</emphasis></para>
3939 </listitem>
3940 <listitem>
3941 <para><emphasis>Draw FCAL inside HEC</emphasis></para>
3942 </listitem>
3943 <listitem>
3944 <para><emphasis>CSC Gas Gap</emphasis></para>
3945 <para>Select value, choice between:
3946 <itemizedlist>
3947 <listitem>
3948 <para><emphasis>1</emphasis> (default)</para>
3949 </listitem>
3950 <listitem>
3951 <para><emphasis>2</emphasis></para>
3952 </listitem>
3953 <listitem>
3954 <para><emphasis>3</emphasis></para>
3955 </listitem>
3956 <listitem>
3957 <para><emphasis>4</emphasis></para>
3958 </listitem>
3959 </itemizedlist>
3960 </para>
3961 </listitem>
3962 <listitem>
3963 <para><emphasis>TGC Gas Gap</emphasis></para>
3964 <para>Select value, choice between:
3965 <itemizedlist>
3966 <listitem>
3967 <para><emphasis>1</emphasis> (default)</para>
3968 </listitem>
3969 <listitem>
3970 <para><emphasis>2</emphasis></para>
3971 </listitem>
3972 <listitem>
3973 <para><emphasis>3</emphasis></para>
3974 </listitem>
3975 </itemizedlist>
3976 </para>
3977 </listitem>
3978 </itemizedlist>
3979 </para>
3980
3981 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
3982 <sect2 id="YXEndCap">
3983 <title id="YXEndCap.title">5.1.1 Muon Detector Endcaps in Y/X Projection</title>
3984
3985 <para>
3986 In order to display the muon detector endcaps and the respective hits
3987 (drawn as points or lines) single stations must be selected:
3988
3989 <itemizedlist>
3990 <listitem>
3991 <para>
3992 <emphasis>TGC</emphasis>
3993 - Inner 1, Middle 1, Middle 2 and Middle 3. The TGC data may belong to
3994 different sublayers selected by the TGC Gas Gap parameter.
3995 </para>
3996 </listitem>
3997 <listitem>
3998 <para>
3999 <emphasis>MDT</emphasis>
4000 - Inner 1, Extension, Middle and Outer.
4001 </para>
4002 </listitem>
4003 </itemizedlist>
4004 </para>
4005
4006 <para>
4007 These pictures show best the structure of the layers.
4008 Their position can be seen best from
4009 ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>).
4010 The name of a specific module may be obtained by
4011 picking (<xref endterm="Pick.title" linkend="Pick"></xref>).
4012 </para>
4013
4014 <para>
4015 In the standard Y/X view (<xref endterm="YX.title" linkend="YX"></xref>) the
4016 inner detector and the calorimeter and muon barrel are displayed.
4017 </para>
4018
4019 </sect2>
4020
4021 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4022 <sect2 id="YXEndCapLArHEC">
4023 <title id="YXEndCapLArHEC.title">5.1.2 LAr and HEC Endcaps in Y/X Projection</title>
4024
4025 <para>
4026 In order to display the LAr and HEC endcaps there are several options:
4027
4028 <itemizedlist>
4029 <listitem>
4030 <para>
4031 <emphasis>Individual layers</emphasis>
4032 - Shows the hits in both endcaps unless a cut on η is applied.
4033 </para>
4034 </listitem>
4035 <listitem>
4036 <para>
4037 <emphasis>Summed layers</emphasis>
4038 - Takes the sum of all the layers in the endcap, as with the individual
4039 layers this takes the hits in both endcaps unless a cut on η is applied.
4040 </para>
4041 </listitem>
4042 <listitem>
4043 <para>
4044 <emphasis>Multiple layers</emphasis>
4045 - These projections can also be used by using the rectangle selection on
4046 the rubberband menu (<xref endterm="RubberbandYX.title" linkend="RubberbandYX"></xref>).
4047 </para>
4048 </listitem>
4049 </itemizedlist>
4050 </para>
4051
4052 <para>
4053 In the standard Y/X view (<xref endterm="YX.title" linkend="YX"></xref>) the
4054 LAr and HEC Endcaps are not displayed.
4055 </para>
4056
4057 </sect2>
4058
4059 </sect1>
4060
4061 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4062 <sect1 id="VP">
4063 <title id="VP.title">5.2 φ/η Projection</title>
4064
4065 <para>
4066 Calorimeter data from a single sampling are best shown in a φ/η
4067 projection, where the energy deposits may be shown through Lego towers or
4068 other methods. There are also methods to show several samplings superimposed.
4069 </para>
4070
4071 <para>
4072 Data from 3D tracking chambers may be shown in this projection with optimal
4073 separation of tracks. However one faces the problem, that charge, track
4074 momentum and the distance of hits from the beam axis cannot be recognised.
4075 </para>
4076
4077 <para>
4078 One way out is the V-plot, which preserves all the features of the
4079 φ/η projection. It may be applied to both tracks and hits.
4080 The latter without using any hit to track association.
4081 </para>
4082
4083 <para>
4084 For a point in space (with coordinates φ, η, ρ) a pair of
4085 points is displayed on the V-plot picture. In the case of particles moving
4086 in a solenoidal field the two displayed points get the same φ as
4087 vertical position and get two different horizontal positions namely
4088 </para>
4089
4090 <para>
4091 η ± k × (ρ<subscript>max</subscript>-ρ)
4092 </para>
4093
4094 <para>
4095 The value of the parameter k (gradient) is set by default but may be changed
4096 interactively. The parameter ρ<subscript>max</subscript> is set
4097 automatically depending on the selected view.
4098 As k and ρ<subscript>max</subscript> are known, φ, η and ρ
4099 may be recalculated from the coordinates of a pair of displayed points,
4100 which means that the V-plot is a true 3-dimensional image.
4101 </para>
4102
4103 <para>
4104 The position ZVTx of the primary vertex along the beam axis must be known to
4105 calculate η.
4106 </para>
4107
4108 <para>
4109 The following rules apply to interpret the V-plot:
4110
4111 <itemizedlist>
4112 <listitem>
4113 <para>
4114 Helices transform into a V like pattern.
4115 </para>
4116 </listitem>
4117 <listitem>
4118 <para>
4119 For helices pointing to the origin with not too low
4120 P<subscript>t</subscript> the arms of the V's are straight.
4121 </para>
4122 </listitem>
4123 <listitem>
4124 <para>
4125 For helices not pointing to the origin the arms of the V's
4126 are curved:
4127 <itemizedlist>
4128 <listitem>
4129 <para>
4130 with the same sign of curvature for tracks separated from
4131 the origin in z,
4132 </para>
4133 </listitem>
4134 <listitem>
4135 <para>
4136 with opposite sign of curvature for tracks separated in ρ.
4137 </para>
4138 </listitem>
4139 </itemizedlist>
4140 </para>
4141 </listitem>
4142 <listitem>
4143 <para>
4144 Positive tracks give V's pointing down.
4145 </para>
4146 </listitem>
4147 <listitem>
4148 <para>
4149 Negative tracks give V's pointing up.
4150 </para>
4151 </listitem>
4152 <listitem>
4153 <para>
4154 The gradient of the V arms is proportional to
4155 1/P<subscript>t</subscript>:
4156 <itemizedlist>
4157 <listitem>
4158 <para>
4159 high P<subscript>t</subscript> tracks give V's with large opening angle,
4160 </para>
4161 </listitem>
4162 <listitem>
4163 <para>
4164 low P<subscript>t</subscript> tracks give V's with
4165 small opening angle.
4166 </para>
4167 </listitem>
4168 </itemizedlist>
4169 </para>
4170 </listitem>
4171 </itemizedlist>
4172 </para>
4173
4174 <para>
4175 <emphasis>View's</emphasis>
4176 </para>
4177
4178 <para>
4179 In the standard view the energy deposits in the calorimeters are represented
4180 by boxes with the area of the box proportional to the energy deposited.
4181 All samplings and all calorimeters are drawn superimposed. Furthermore,
4182 all energies are given a color according to which of six predefined energy
4183 ranges they belong. The cells belonging to each energy range are drawn
4184 sequentally with the most energetic range being drawn first.
4185 This provides a view of the jet structure of the event where energetic
4186 isolated particles may be distinguished from jets. Tracks and S3D hits
4187 may be drawn superimposed on the calorimeters with the apex of the V
4188 corresponding to the exit of the track from the S3D detectors.
4189 </para>
4190
4191 <para>
4192 In the S3D and TRT views the apex of the V corresponds to the exit of
4193 the track from the S3D and TRT detectors, respectively.
4194 </para>
4195
4196 <para>
4197 In the other views the calorimeters data corresponding to a single sampling
4198 are drawn according to their actual cell structure and the tracks which are
4199 superimposed are drawn with the apex of the V corresponding to the
4200 intersection of the track with the selected sampling of the calorimeters.
4201 </para>
4202
4203 <para>
4204 <emphasis>Selecting data from a single jet</emphasis>
4205 </para>
4206
4207 <para>
4208 Data corresponding to a single jet or isolated particle may be selected
4209 using the special rubberband options (see
4210 <xref endterm="InteractionControl.title" linkend="InteractionControl"></xref>)
4211 available in the φ/η projection.
4212 </para>
4213
4214 <para>
4215 <emphasis>Data selection</emphasis>
4216 </para>
4217
4218 <para>
4219 For convenience the data to be viewed in the V-plot (S3D, STr, RTr and SNP)
4220 may be selected directly in the φ/η projection.
4221 </para>
4222
4223 <para>
4224 <emphasis>Options</emphasis>
4225 </para>
4226
4227 <para>
4228 By default all η values used in this projection are calculated taking
4229 into account the z offset of the primary vertex (ZVtx).
4230 However, if η vertex is deselected η will be calculated from z=0.
4231 </para>
4232
4233 <para>
4234 The apex of a V may be drawn to a cylinder smaller than the default
4235 associated with a view by setting the ρMax and zMax parameters.
4236 </para>
4237
4238 <para>
4239 When tracks are being shown without the corresponding S3D hits, it may
4240 be useful to draw only the outermost portion of the V as determined by
4241 the Short V parameter.
4242 </para>
4243
4244 <para>
4245 The VPlot Island parameter is used to set the color of the island drawn
4246 to allow easier comparison of the relative locations of the hit cells
4247 from different samplings which are being displayed in different windows.
4248 </para>
4249
4250 <para>
4251 The Draw Apex parameter is used to draw an additional symbol at the apex
4252 of the V. This is useful for high momentum tracks where it may otherwise
4253 be difficult to distinguish the exact location of the apex.
4254 </para>
4255
4256 <para>
4257 In the V-plot where the S3D hits are normally nearby it is useful to have
4258 them represented by a symbol of a smaller size than in the other projections.
4259 This difference in symbol size is determined by the S3D Δ
4260 Size parameter.
4261 </para>
4262
4263 </sect1>
4264
4265 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4266 <sect1 id="EG">
4267 <title id="EG.title">5.3 φ/λ Projection</title>
4268
4269 <para>
4270 To be filled!
4271 </para>
4272
4273 </sect1>
4274
4275 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4276 <sect1 id="RZ">
4277 <title id="RZ.title">5.4 ρ/Z Projection</title>
4278
4279 <para>
4280 The ρ/Z projection may be used to view 3D tracks and hits and to
4281 associate them to data in the calorimeters. It may also be used to provide
4282 a rough association of tracks to the MDT, RPC z-strips and TGC ρ-strips
4283 data from all sectors superimposed. To make this possible the muon data
4284 are not drawn at ρ but rather at ρ' determined by projecting ρ
4285 onto the φ-axis of the corresponding sector.
4286 </para>
4287
4288 <para>
4289 Although not a linear projection, the ρ/Z projection is intuitively
4290 understandable. Circles (projections of helices) which pass through the
4291 origin are recognised as approximately straight lines:
4292 </para>
4293
4294 <para>
4295 ρ ≈
4296 (P<subscript>t</subscript>/P<subscript>z</subscript>)×(-Z<subscript>vertex</subscript>)
4297 </para>
4298
4299 <para>
4300 The picture of the detector is the same as if a cut through the beam axis
4301 would have been applied. For a point with coordinates ρ and φ,
4302 this is achieved by defining:
4303 </para>
4304
4305 <para>
4306 ρ = +√(X<superscript>2</superscript>+Y<superscript>2</superscript>)
4307 if
4308 φ<subscript>ρZ</subscript>-90°
4309 < φ <
4310 φ<subscript>ρZ</subscript>+90°
4311 </para>
4312
4313 <para>
4314 and
4315 </para>
4316
4317 <para>
4318 ρ = -√(X<superscript>2</superscript>+Y<superscript>2</superscript>)
4319 otherwise.
4320 </para>
4321
4322 <para>
4323 Due to the cylindrical structure of ATLAS, the ρ/Z projection is the
4324 only one, where all main detector units may be displayed without overlapping.
4325 The different radial sub-elements of the muon detectors do overlap,
4326 but may be shown separately in the X'/Z projection
4327 (see <xref endterm="XZ.title" linkend="XZ"></xref>).
4328 </para>
4329
4330 <para>
4331 In the Y/X (see <xref endterm="YX.title" linkend="YX"></xref>),
4332 φ/ρ (see <xref endterm="FR.title" linkend="FR"></xref>)
4333 and φ/Z (see <xref endterm="FZ.title" linkend="FZ"></xref>)
4334 projections tracks are seen from the side of maximum curvature.
4335 In the ρ/Z projection (see <xref endterm="RZ.title" linkend="RZ"></xref>)
4336 they are seen from the "orthogonal" side, i.e. the side of minimum
4337 curvature. Therefore ρ/Z is said to be orthogonal to Y/X, φ/ρ
4338 and φ/Z.
4339 </para>
4340
4341 <para>
4342 In order to check in space if a track passes through a set of 3D hits,
4343 or if it points to a set of calorimeter hits, the hits and the track
4344 must be displayed in at least two 2-dimensional projections which are
4345 orthogonal to each other i.e. in ρ/Z and in one of the projections Y/X,
4346 φ/ρ or φ/Z.
4347 Instead of using a pair of projections the 3-dimensional
4348 V-plot (see <xref endterm="VP.title" linkend="VP"></xref>)
4349 is sufficient to check pattern recognition and track extrapolation.
4350 </para>
4351
4352 <para>
4353 Charge and momentum cannot be estimated in ρ/Z.
4354 </para>
4355
4356 <para>
4357 <emphasis>TRT</emphasis> data cannot be shown, unless very few TRT straws can
4358 be selected, which appear as lines, as neither Z in the barrel nor ρ in
4359 the endcap are known.
4360 </para>
4361
4362 <para>
4363 The inner detectors may be enlarged without enlarging the outer ones by
4364 using the fisheye interaction
4365 (see <xref endterm="FishEye.title" linkend="FishEye"></xref>).
4366 </para>
4367
4368 <para>
4369 The angle <emphasis>φ<subscript>
4370 ρZ</subscript></emphasis> may be
4371 modified in any φ defining projection while simultaneously being viewed
4372 in the ρ/Z projection as described in the Synchro Cursors interaction
4373 (see <xref endterm="SynchroCursors.title" linkend="SynchroCursors"></xref>).
4374 </para>
4375
4376 <para>
4377 <emphasis>The ρ/Z Projection Menu
4378 (see <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>)</emphasis>
4379
4380 <itemizedlist>
4381 <listitem>
4382 <para>
4383 <emphasis>Aspect Ratio 1</emphasis>
4384 - Sets the aspect ratio (width/height) of the picture to 1.
4385 The operation ensures that the original picture which was
4386 in the window does not go outside the window.
4387 </para>
4388 </listitem>
4389 </itemizedlist>
4390 </para>
4391
4392 </sect1>
4393
4394 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4395 <sect1 id="FR">
4396 <title id="FR.title">5.5 φ/ρ Projection</title>
4397
4398 <para>
4399 The φ/ρ projection may be regarded as a modified
4400 Y/X projection (see <xref endterm="YX.title" linkend="YX"></xref>).
4401 The same data are displayed in both. This projection may be used to view
4402 3D tracks and hits and to associate them to data in the TRT, LAr and TILE
4403 barrels, and to the RPC φ-strips.
4404 </para>
4405
4406 <para>
4407 The φ/ρ projection is not intuitively understandable, but allows to
4408 get a better angular separation of data from the innermost detectors.
4409 It has a singularity at ρ=0, so that the primary vertex cannot be
4410 displayed. Circles (projections of helices) which pass through the origin,
4411 transform into approximately straight lines, with a gradient inversely
4412 proportional to P<subscript>t</subscript>:
4413 </para>
4414
4415 <para>
4416 ρ ∝ P<subscript>t</subscript> ×
4417 sin(φ-φ<subscript>0</subscript>) ≈
4418 P<subscript>t</subscript> × (φ-φ<subscript>0</subscript>)
4419 </para>
4420
4421 <para>
4422 where the constant of proportionality depends on the strength of the
4423 solenoidal magnetic field. For large path lengths, φ will increase
4424 (decrease) with increasing path length for negatively (positively) charged
4425 tracks. Tracks not pointing exactly to the origin
4426 (d<subscript>0</subscript>≠0)
4427 show a distinct non linearity when approaching ρ=0. Low momentum tracks
4428 curve far from the origin, due to the approximation in the above formula.
4429 </para>
4430
4431 <para>
4432 Checking of pattern recognition is easier in the φ/ρ projection,
4433 where helices are approximately straight lines, than in the
4434 Y/X projection (see <xref endterm="YX.title" linkend="YX"></xref>).
4435 In particular a Y-Skew rubber-band can be used to optimally select the
4436 region around a track for closer inspection. This would correspond to a -
4437 non-existent - curved rubber-band pattern in the Y/X projection.
4438 </para>
4439
4440 <para>
4441 If the standard view is selected, data from the calorimeter endcaps and the
4442 muon endcaps are not displayed, in order not to complicate the picture, as
4443 they may fall on top of data from the tracking chambers or data from the
4444 calorimeter barrel.
4445 </para>
4446
4447 <para>
4448 Alternatively, the view parameter may be used to select a single layer of
4449 the muon endcap detectors
4450 (see <xref endterm="YXEndCap.title" linkend="YXEndCap"></xref>).
4451 In this case, the TGC Gas Gap parameter may be used to further select
4452 data from only a given sublayer of the detector. The view parameter may also
4453 be used to select layers from the FCAL, LAr and HEC Endcaps and MBTS, it
4454 can also display the summed LAr and HEC Endcaps.
4455 </para>
4456
4457 <para>
4458 The φ/ρ projection is special in that it allows both the
4459 particle's charge and P<subscript>t</subscript> to be estimated from the
4460 track slope.
4461 </para>
4462
4463 <para>
4464 The projection orthogonal to φ/ρ is the ρ/Z projection
4465 (see <xref endterm="RZ.title" linkend="RZ"></xref>).
4466 </para>
4467
4468 </sect1>
4469
4470 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4471 <sect1 id="FZ">
4472 <title id="FZ.title">5.6 φ/Z Projection</title>
4473
4474 <para>
4475 The φ/Z projection may be used to view 3D tracks and hits and to
4476 associate them to data in the TRT endcaps, the LAr endcaps, the HEC and to
4477 the TGC φ-strips. Indeed it is the only projection in which the TRT
4478 endcap straws may be viewed.
4479 </para>
4480
4481 <para>
4482 It is not intuitively understandable, but allows to get a good angular
4483 separation of data from the innermost detectors. Circles (projections of
4484 helices) which pass through the origin, transform into straight lines,
4485 with a gradient inversely proportional to P<subscript>z</subscript>:
4486 </para>
4487
4488 <para>
4489 z-z<subscript>v</subscript> ∝
4490 P<subscript>z</subscript> × (φ-φ<subscript>0</subscript>)
4491 </para>
4492
4493 <para>
4494 where the constant of proportionality depends on the strength of the
4495 solenoidal magnetic field. For large path lengths, φ will increase
4496 (decrease) with increasing path length for negatively (positively) charged
4497 tracks.
4498 </para>
4499
4500 <para>
4501 Checking of pattern recognition is easier in the φ/Z projection than
4502 in the Y/X projection (see <xref endterm="YX.title" linkend="YX"></xref>).
4503 In particular a Y-Skew rubber-band can be used to optimally select the region
4504 around a track for closer inspection. Ideal helices passing through the
4505 origin appear as a sequence of parallel lines, one for each turn. Even
4506 helices with slowly changing radius can be identified as such. For simulated
4507 and reconstructed tracks only the first half turn of the helix is drawn.
4508 </para>
4509
4510 <para>
4511 If the standard view is selected, data from the calorimeter barrel are not
4512 displayed (in order not to complicate the picture) as they fall on top of
4513 data either from the tracking chambers or from the calorimeter endcaps.
4514 </para>
4515
4516 <para>
4517 Alternatively, the view parameter may be used to select a single layer of the
4518 muon barrel detectors. In the case of RPC layers, the RPC Gas Gap parameter
4519 may be used to further select data from only a given sublayer of the detector.
4520 </para>
4521
4522 <para>
4523 The projection orthogonal to φ/Z is the ρ/Z projection
4524 (see <xref endterm="RZ.title" linkend="RZ"></xref>).
4525 </para>
4526
4527 </sect1>
4528
4529 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4530 <sect1 id="XZ">
4531 <title id="XZ.title">5.7 X'/Z Projection</title>
4532
4533 <para>
4534 If one views an event perpendicular to the beam axis, some tracks are
4535 curved and some are straight, depending on the azimuthal angle
4536 <emphasis>φ<subscript>
4537 VIEW</subscript></emphasis> of the viewing
4538 direction.
4539 Such a projection is of use only if a sufficiently narrow jet is selected,
4540 which may even consist of a single track. In this case a jet based Cartesian
4541 coordinate system is optimal, which depends on the direction of the jet axis:
4542
4543 <itemizedlist>
4544 <listitem>
4545 <para>
4546 Y' = perpendicular to the beam axis and the jet axis,
4547 </para>
4548 </listitem>
4549 <listitem>
4550 <para>
4551 X' = perpendicular to the Z and Y' axis, i.e. it lies in the
4552 plane containing the beam axis and the jet axis,
4553 </para>
4554 </listitem>
4555 <listitem>
4556 <para>
4557 Z = beam-axis.
4558 </para>
4559 </listitem>
4560 </itemizedlist>
4561 </para>
4562
4563 <para>
4564 In the X'/Z projection a single track has minimum curvature and maximum
4565 angle to the Z axis. It lies in the display screen. The track is seen
4566 from the orthogonal side as compared to the Y/X projection
4567 (see <xref endterm="YX.title" linkend="YX"></xref>).
4568 The jet image is similar to the one in the ρ/Z projection
4569 (see <xref endterm="RZ.title" linkend="RZ"></xref>),
4570 which is however not limited to single jets. This projection provides a
4571 second intuitively understandable view of the region around the primary
4572 vertex orthogonal to that of the Y'/Z projection
4573 (see <xref endterm="YZ.title" linkend="YZ"></xref>). The momentum
4574 of tracks may not be estimated form their curvature in this projection.
4575 </para>
4576
4577 <para>
4578 Due to the maximum angle between jet and Z axis in the X'/Z projection the
4579 sub detector sectors lying in the jet direction can be displayed for the
4580 barrel and the endcap. This is specially interesting for the MDT tubes.
4581 If only one <emphasis>MDT sector</emphasis> is displayed and the viewing
4582 direction is perpendicular to the sector angle, the MDT tubes can be
4583 represented as small circles.
4584 </para>
4585
4586 <para>
4587 <emphasis>The X'/Z Projection Menu
4588 (see <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>)</emphasis>
4589
4590 <itemizedlist>
4591 <listitem>
4592 <para>
4593 <emphasis>Aspect Ratio 1</emphasis>
4594 - Sets the aspect ratio (width/height) of the picture to 1.
4595 The operation ensures that the original picture which was in
4596 the window does not go outside the window.
4597 </para>
4598 </listitem>
4599 </itemizedlist>
4600 </para>
4601
4602 </sect1>
4603
4604 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4605 <sect1 id="YZ">
4606 <title id="YZ.title">5.8 Y'/Z Projection</title>
4607
4608 <para>
4609 If one views an event perpendicular to the beam axis, some tracks are
4610 curved and some are straight, depending on the azimuthal angle
4611 <emphasis>φ<subscript>
4612 VIEW</subscript></emphasis> of the viewing
4613 direction. Such a projection
4614 is of use only if a sufficiently narrow jet is selected, which may even
4615 consist of a single track. In this case a jet based Cartesian coordinate
4616 system is optimal, which depends on the direction of the jet axis:
4617
4618 <itemizedlist>
4619 <listitem>
4620 <para>
4621 Y' = perpendicular to the beam axis and the jet axis,
4622 </para>
4623 </listitem>
4624 <listitem>
4625 <para>
4626 X' = perpendicular to the Z and Y' axis, i.e. it lies in the
4627 plane containing the beam axis and the jet axis,
4628 </para>
4629 </listitem>
4630 <listitem>
4631 <para>
4632 Z = beam axis.
4633 </para>
4634 </listitem>
4635 </itemizedlist>
4636 </para>
4637
4638 <para>
4639 In the Y'/Z projection a single track has maximal curvature and minimum
4640 angle to the Z axis. Seen with stereo it would leave the plane towards
4641 the observer or opposite. The track is seen from the same side as in the
4642 Y/X projection
4643 (see <xref endterm="YX.title" linkend="YX"></xref>) only rotated
4644 around the Y' axis. This projection provides a second intuitively
4645 understandable view of the region around the primary vertex orthogonal
4646 to that of the X'/Z projection
4647 (see <xref endterm="XZ.title" linkend="XZ"></xref>).
4648 The momentum of tracks may not be estimated form their curvature
4649 in this projection.
4650 </para>
4651
4652 <para>
4653 The calorimeters and the muon chamber barrels cannot be displayed as they
4654 would overlap the inner tracking detectors. The endcaps can be drawn.
4655 </para>
4656
4657 <para>
4658 An alternative to Y'/Z is the expert φ/Z projection
4659 (see <xref endterm="FZ.title" linkend="FZ"></xref>),
4660 which is not limited to single jets.
4661 </para>
4662
4663 <para>
4664 <emphasis>The Y'/Z Projection Menu (see
4665 <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>)</emphasis>
4666
4667 <itemizedlist>
4668 <listitem>
4669 <para>
4670 <emphasis>Aspect Ratio 1</emphasis>
4671 - Sets the aspect ratio (width/height) of the picture to 1.
4672 The operation ensures that the original picture which was
4673 in the window does not go outside the window.
4674 </para>
4675 </listitem>
4676 </itemizedlist>
4677 </para>
4678
4679 </sect1>
4680
4681 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4682 <sect1 id="3D">
4683 <title id="3D.title">5.9 3D Projection</title>
4684
4685 <para>
4686 The 3D projection is a linear projection of the data such that a given axis
4687 is transformed into a straight horizontal line through the center of the
4688 window. It allows the user to perform rotations about an arbitrary axis in
4689 space. The unit vector of this axis is defined by <emphasis>(xAxis, yAxis,
4690 zAxis)</emphasis>. The center of rotation is taken to be the reconstructed
4691 primary vertex of the event.
4692 </para>
4693
4694 <para>
4695 Rotations about the selected axis by an angle φ are performed by
4696 dragging with the <emphasis>R</emphasis> modifier key pressed down in the
4697 ZMR interaction (see <xref endterm="ZMR.title" linkend="ZMR"></xref>).
4698 </para>
4699
4700 <para>
4701 The axis of rotation will by default be set to the line joining the
4702 primary vertex to the last secondary vertex to be reconstructed.
4703 </para>
4704
4705 </sect1>
4706
4707 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4708 <sect1 id="3DBox">
4709 <title id="3DBox.title">5.10 3DBox Projection</title>
4710
4711 <para>
4712 The 3DBox projection allows the user to investigate a small 3D region
4713 around a newly formed secondary vertex.
4714 Every time a new secondary vertex is formed from a list
4715 (see <xref endterm="Lists.title" linkend="Lists"></xref>), the direction of
4716 flight of the incoming particle is calculated as the vector joining the
4717 primary vertex to the reconstructed vertex. A 3D box of default size
4718 2 mm x 2 mm x 4 cm is formed around this axis. The box has three vertically
4719 oriented planes and transparent front and top faces. The left hand plane
4720 contains the primary vertex, which is represented by the red point.
4721 The axis of the direction of flight of the decaying particle lies
4722 horizontally on the screen. The middle and right hand plane are at decay
4723 distances of 2 cm and 4 cm, respectively. Tracks fully contained withing
4724 the box are represented as straight lines and their intersections with
4725 the three planes are shown as ellipses representing the correlated impact
4726 parameter errors of the track. The dashed sections of tracks correspond
4727 to regions where they pass behind behind a plane.
4728 </para>
4729
4730 <para>
4731 The user may interact with the region shown in the box via the 3DBox
4732 interaction. When the 3D box interaction is selected the size of the box
4733 may be adjusted in a manner analogous to the zooming performed in the
4734 ZMR (see <xref endterm="ZMR.title" linkend="ZMR"></xref>) interaction.
4735 </para>
4736
4737 <para>
4738 There are two operations which may be performed:
4739
4740 <itemizedlist>
4741 <listitem>
4742 <para>
4743 <emphasis>Changing the volume contained by the box</emphasis>
4744 </para>
4745 <para>
4746 The volume contained by the box is changed by dragging any point of the
4747 picture towards or away from the central point represented by a small
4748 <emphasis>red circle</emphasis> superimposed on the picture.
4749 Dragging towards the central
4750 point will increase the volume of the box. Dragging away from the central
4751 point will decrease the volume of the box. The length of the box may be
4752 changed independently of the width by holding down the <emphasis>H</emphasis>
4753 key of the
4754 keyboard. The width of the box may be changed independently of the length
4755 by holding down the <emphasis>V</emphasis> key of the keyboard.
4756 </para>
4757 </listitem>
4758 <listitem>
4759 <para>
4760 <emphasis>Rotation</emphasis>
4761 </para>
4762 <para>
4763 In order to obtain a rotation of the tracks around the horizontal axis
4764 corresponding to the direction of flight of the decaying particle you
4765 drag any point on the picture while keeping the <emphasis>R</emphasis>
4766 key of your keyboard pressed.
4767 </para>
4768 </listitem>
4769 </itemizedlist>
4770 </para>
4771
4772 <para>
4773 <emphasis>The 3D Box Pop-up Menu</emphasis>
4774 </para>
4775
4776 <para>
4777 The 3DBox Pop-up Menu can be accessed by right-clicking into the desired
4778 canvas pad while keeping the <emphasis>R</emphasis> key of your keyboard
4779 pressed.
4780 It contains the following set of utility operations:
4781
4782 <itemizedlist>
4783 <listitem>
4784 <para>
4785 <emphasis>Default box Volume</emphasis>
4786 - reset the volume of the box to correspond to the default values.
4787 </para>
4788 </listitem>
4789 </itemizedlist>
4790 </para>
4791
4792 <para>
4793 <emphasis>Modifier Key Summary</emphasis>
4794
4795 <table frame="topbot" pgwide="0">
4796 <title>Modifier key summary</title>
4797 <tgroup cols="2">
4798 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
4799 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
4800 <thead>
4801 <row rowsep="1">
4802 <entry>Modifier Key</entry>
4803 <entry>Action</entry>
4804 </row>
4805 </thead>
4806 <tbody>
4807 <row rowsep="1">
4808 <entry><emphasis>left-press</emphasis> only</entry>
4809 <entry><emphasis>Change</emphasis> the volume of the box</entry>
4810 </row>
4811 <row rowsep="1">
4812 <entry><emphasis>Z</emphasis> + <emphasis>left-press</emphasis></entry>
4813 <entry><emphasis>Change</emphasis> the volume of the box</entry>
4814 </row>
4815 <row rowsep="1">
4816 <entry><emphasis>H</emphasis> + <emphasis>left-press</emphasis></entry>
4817 <entry><emphasis>Change</emphasis> the length of the box</entry>
4818 </row>
4819 <row rowsep="1">
4820 <entry><emphasis>V</emphasis> + <emphasis>left-press</emphasis></entry>
4821 <entry><emphasis>Change</emphasis> the width of the box</entry>
4822 </row>
4823 <row rowsep="1">
4824 <entry><emphasis>R</emphasis> + <emphasis>left-press</emphasis></entry>
4825 <entry><emphasis>Rotate</emphasis> the tracks around the direction of
4826 flight of the decaying particle
4827 </entry>
4828 </row>
4829 </tbody>
4830 </tgroup>
4831 </table>
4832 </para>
4833
4834 </sect1>
4835
4836 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
4837 <sect1 id="LegoPlot">
4838 <title id="LegoPlot.title">5.11 Lego Plot</title>
4839
4840 <para>
4841 The lego plot shows stacks of energy seen in the calorimeter towers.
4842 The stacks are positioned on the surface spanned by η (in radians) and
4843 φ (in degrees).
4844 </para>
4845
4846 <para>
4847 <emphasis>Parameters</emphasis>
4848
4849 <itemizedlist>
4850 <listitem>
4851 <para><emphasis>View</emphasis></para>
4852 <para>Select the data type, choice between:
4853 <itemizedlist>
4854 <listitem>
4855 <para><emphasis>Calo</emphasis> (default)</para>
4856 </listitem>
4857 <listitem>
4858 <para><emphasis>LVL1TriggerTower</emphasis></para>
4859 </listitem>
4860 <listitem>
4861 <para><emphasis>LVL1JetElement</emphasis></para>
4862 </listitem>
4863 </itemizedlist>
4864 </para>
4865 </listitem>
4866 <listitem>
4867 <para><emphasis>ET Axis Height</emphasis></para>
4868 <para>Set the maximum height of the ET axis in GeV.</para>
4869 <para>0 = auto sets height to height of tallest calo tower or if no calo
4870 information is present then the tallest AOD tower is used.</para>
4871 </listitem>
4872 <listitem>
4873 <para><emphasis>φ Cells</emphasis></para>
4874 <para>Set the number of bins in φ.</para>
4875 </listitem>
4876 <listitem>
4877 <para><emphasis>η Cells</emphasis></para>
4878 <para>Set the number of bins in η.</para>
4879 </listitem>
4880 <listitem>
4881 <para><emphasis>Lego Cut</emphasis></para>
4882 <para>Set the minimum energy for lego bars to be drawn.</para>
4883 </listitem>
4884 <listitem>
4885 <para><emphasis>Jet Circle Radius</emphasis></para>
4886 <para>Set the jet circle radius.</para>
4887 </listitem>
4888 <listitem>
4889 <para><emphasis>Scale</emphasis></para>
4890 <para>
4891 Set the scale type, choice between:
4892 <itemizedlist>
4893 <listitem>
4894 <para><emphasis>standard</emphasis> (default)</para>
4895 </listitem>
4896 <listitem>
4897 <para><emphasis>logarithmic</emphasis></para>
4898 </listitem>
4899 <listitem>
4900 <para><emphasis>square root</emphasis></para>
4901 </listitem>
4902 </itemizedlist>
4903 </para>
4904 </listitem>
4905 <listitem>
4906 <para><emphasis>Reverse</emphasis></para>
4907 <para>Toggle to select reverse η or not.</para>
4908 </listitem>
4909 <listitem>
4910 <para><emphasis>Fill</emphasis></para>
4911 <para>Set the background fill color.</para>
4912 </listitem>
4913 <listitem>
4914 <para><emphasis>Draw Lego</emphasis></para>
4915 <para>Toggle to draw selected parts of lego plot or not.
4916 <itemizedlist>
4917 <listitem>
4918 <para><emphasis>Draw Legend</emphasis></para>
4919 <para>Toggle to draw selected parts of legend or not.
4920 <itemizedlist>
4921 <listitem>
4922 <para><emphasis>Main</emphasis></para>
4923 <para>Toggle to draw main legend or not.</para>
4924 </listitem>
4925 <listitem>
4926 <para><emphasis>L1 ET</emphasis></para>
4927 <para>Toggle to draw ET info or not.</para>
4928 </listitem>
4929 <listitem>
4930 <para><emphasis>Item list</emphasis></para>
4931 <para>Toggle to draw item list or not.</para>
4932 </listitem>
4933 </itemizedlist>
4934 </para>
4935 </listitem>
4936 <listitem>
4937 <para><emphasis>Draw Plot</emphasis></para>
4938 <para>Toggle to draw plot or not.</para>
4939 </listitem>
4940 </itemizedlist>
4941 </para>
4942 </listitem>
4943 </itemizedlist>
4944
4945 <para>
4946 <emphasis>The Lego Projection Menu (see
4947 <xref endterm="ProjectionMenu.title" linkend="ProjectionMenu"></xref>)</emphasis>
4948 <para>
4949 These options are to aid with selecting useful rotations which can also be
4950 achieved by using the rotation option in ZMR
4951 (<xref endterm="ZMR.title" linkend="ZMR"></xref>).
4952 </para>
4953 <itemizedlist>
4954 <listitem>
4955 <para>
4956 <emphasis>View normal</emphasis>
4957 - Sets the viewing angle to the default.
4958 </para>
4959 </listitem>
4960 <listitem>
4961 <para>
4962 <emphasis>View from above</emphasis>
4963 - Sets the viewing angle to view from above so reduces the Et axis size.
4964 </para>
4965 </listitem>
4966 <listitem>
4967 <para>
4968 <emphasis>View ET v η</emphasis>
4969 - Sets the viewing angle so that the plot is ET v η.
4970 </para>
4971 </listitem>
4972 <listitem>
4973 <para>
4974 <emphasis>View ET v φ</emphasis>
4975 - Sets the viewing angle so that the plot is ET v φ.
4976 </para>
4977 </listitem>
4978 </itemizedlist>
4979 </para>
4980 </para>
4981
4982 </sect1>
4983
4984 </chapter>
4985
4986 <!--=======================================================================-->
4987 <chapter id="DataMain">
4988 <title id="DataMain.title">Data</title>
4989
4990 <para>
4991 The <emphasis>data types</emphasis> that are available in Atlantis are listed
4992 in section Data Types
4993 (<xref endterm="DataTypes.title" linkend="DataTypes"></xref>).
4994 The graphical repesentation of data types in the different projections on
4995 the Canvas is listed in section Data Representation in Projections
4996 (<xref endterm="DataRep.title" linkend="DataRep"></xref>).
4997 </para>
4998
4999 <para>
5000 <emphasis>Control of data to be displayed</emphasis> on the Atlantis Canvas
5001 is done by making a selection of available data and by applying cuts to the
5002 selected data:
5003
5004 <itemizedlist>
5005 <listitem>
5006 <para>
5007 The <emphasis>selection of data</emphasis> is found via the
5008 <emphasis>Data</emphasis> tab of the parameter control
5009 (<xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
5010 of the Control Window.
5011 See Data Selection (<xref endterm="Data.title" linkend="Data"></xref>) for a
5012 description of the various selections.
5013 Order of drawing, data representation by projection and commands are listed
5014 here.
5015 </para>
5016 </listitem>
5017 <listitem>
5018 <para>
5019 The <emphasis>cuts that can be applied</emphasis> are found
5020 via the <emphasis>Cuts</emphasis> tab of the parameter control
5021 (<xref endterm="ParametersControl.title" linkend="ParametersControl"></xref>)
5022 of the Control Window.
5023 See Cuts (<xref endterm="Cuts.title" linkend="Cuts"></xref>) for a
5024 description of the various cuts that can be applied.
5025 </para>
5026 </listitem>
5027 </itemizedlist>
5028
5029 <emphasis>Control of attributes of data types</emphasis> is described in
5030 <xref linkend="Detector"></xref>.
5031 </para>
5032
5033 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
5034 <sect1 id="DataTypes">
5035 <title id="DataTypes.title">6.1 Data Types</title>
5036
5037 <para>
5038 The table below contains a list of names and short descriptions of the
5039 data types available in Atlantis. The names are in alphabetical order.
5040
5041 <table frame="topbot" pgwide="0">
5042 <title>Available data types</title>
5043 <tgroup cols="2">
5044 <colspec colnum="1" colname="colone" colwidth="80" align="left"></colspec>
5045 <colspec colnum="2" colname="coltwo" colwidth="350" align="left"></colspec>
5046 <thead>
5047 <row rowsep="1">
5048 <entry>Data Type</entry>
5049 <entry>Description</entry>
5050 </row>
5051 </thead>
5052 <tbody>
5053 <row rowsep="1">
5054 <entry><emphasis>BJet</emphasis></entry>
5055 <entry>(AOD) B-tagged Jet</entry>
5056 </row>
5057 <row rowsep="1">
5058 <entry><emphasis>CSC</emphasis></entry>
5059 <entry>(MuonDet) Cathode Strip Chambers </entry>
5060 </row>
5061 <row rowsep="1">
5062 <entry><emphasis>Electron</emphasis></entry>
5063 <entry>(AOD) Electron</entry>
5064 </row>
5065 <row rowsep="1">
5066 <entry><emphasis>EmTauROI</emphasis></entry>
5067 <entry>(Calo) Electromagnetic/Tau Region of Interest</entry>
5068 </row>
5069 <row rowsep="1">
5070 <entry><emphasis>ETMis Collections</emphasis></entry>
5071 <entry>(ATLAS) Missing ET Collections</entry>
5072 </row>
5073 <row rowsep="1">
5074 <entry><emphasis>FCAL</emphasis></entry>
5075 <entry>(Calo) Forward Calorimeter</entry>
5076 </row>
5077 <row rowsep="1">
5078 <entry><emphasis>HEC</emphasis></entry>
5079 <entry>(Calo) Hadronic End Cap</entry>
5080 </row>
5081 <row rowsep="1">
5082 <entry><emphasis>Jet</emphasis></entry>
5083 <entry>(ATLAS) ESD Jet</entry>
5084 </row>
5085 <row rowsep="1">
5086 <entry><emphasis>JetROI</emphasis></entry>
5087 <entry>(Calo) Jet Region of Interest</entry>
5088 </row>
5089 <row rowsep="1">
5090 <entry><emphasis>LAr</emphasis></entry>
5091 <entry>(Calo) Liquid Argon Calorimeter</entry>
5092 </row>
5093 <row rowsep="1">
5094 <entry><emphasis>MDT</emphasis></entry>
5095 <entry>(MuonDet) Monitored Drift Tube Chambers</entry>
5096 </row>
5097 <row rowsep="1">
5098 <entry><emphasis>MSeg</emphasis></entry>
5099 <entry>(MuonDet) Segments of Muon Tracks</entry>
5100 </row>
5101 <row rowsep="1">
5102 <entry><emphasis>Muon</emphasis></entry>
5103 <entry>(AOD) Muon</entry>
5104 </row>
5105 <row rowsep="1">
5106 <entry><emphasis>Photon</emphasis></entry>
5107 <entry>(AOD) Photon</entry>
5108 </row>
5109 <row rowsep="1">
5110 <entry><emphasis>RecVertex</emphasis></entry>
5111 <entry>(InDet) Reconstructed Vertices</entry>
5112 </row>
5113 <row rowsep="1">
5114 <entry><emphasis>RMTr</emphasis></entry>
5115 <entry>(MuonDet) Reconstructed Muon Tracks</entry>
5116 </row>
5117 <row rowsep="1">
5118 <entry><emphasis>RPC</emphasis></entry>
5119 <entry>(MuonDet) Resistive Plate Chamber</entry>
5120 </row>
5121 <row rowsep="1">
5122 <entry><emphasis>SiCluster</emphasis></entry>
5123 <entry>(InDet) Silicon Cluster</entry>
5124 </row>
5125 <row rowsep="1">
5126 <entry><emphasis>SiHit</emphasis></entry>
5127 <entry>(InDet) Geant Silicon Hits</entry>
5128 </row>
5129 <row rowsep="1">
5130 <entry><emphasis>SimVertex</emphasis></entry>
5131 <entry>(InDet) Simulated Vertices (Truth Vertex)</entry>
5132 </row>
5133 <row rowsep="1">
5134 <entry><emphasis>SMTr</emphasis></entry>
5135 <entry>(MuonDet) Simulated Muon Tracks</entry>
5136 </row>
5137 <row rowsep="1">
5138 <entry><emphasis>SpacePoint</emphasis></entry>
5139 <entry>(InDet) Silicon 3D Space Points</entry>
5140 </row>
5141 <row rowsep="1">
5142 <entry><emphasis>SNP</emphasis></entry>
5143 <entry>(Calo) Simulated Neutral Particles in Calorimeter (Neutral Truth)</entry>
5144 </row>
5145 <row rowsep="1">
5146 <entry><emphasis>STr</emphasis></entry>
5147 <entry>(InDet) Simulated Tracks (Charged Truth)</entry>
5148 </row>
5149 <row rowsep="1">
5150 <entry><emphasis>TauJet</emphasis></entry>
5151 <entry>(AOD) Tau</entry>
5152 </row>
5153 <row rowsep="1">
5154 <entry><emphasis>TGC</emphasis></entry>
5155 <entry>(MuonDet) Thin Gap Chambers</entry>
5156 </row>
5157 <row rowsep="1">
5158 <entry><emphasis>TILE</emphasis></entry>
5159 <entry>(Calo) Tile Calorimeter</entry>
5160 </row>
5161 <row rowsep="1">
5162 <entry><emphasis>Track Collections</emphasis></entry>
5163 <entry>(InDet) Reconstructed Track Collections</entry>
5164 </row>
5165 <row rowsep="1">
5166 <entry><emphasis>TrigSiSpacePoint</emphasis></entry>
5167 <entry>(InDet) Online Silicon 3D Space Points</entry>
5168 </row>
5169 <row rowsep="1">
5170 <entry><emphasis>TRT_DriftCircle</emphasis></entry>
5171 <entry>(InDet) TRT_DriftCircle Hits</entry>
5172 </row>
5173 </tbody>
5174 </tgroup>
5175 </table>
5176 </para>
5177
5178 </sect1>
5179
5180 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
5181 <sect1 id="DataRep">
5182 <title id="DataRep.title">6.2 Data Representation in Projections</title>
5183
5184 <para>
5185 The following table shows if and how data are displayed in the
5186 different projections.
5187
5188 <table frame="topbot" pgwide="0">
5189 <title>Display of data in different projections</title>
5190 <tgroup cols="7">
5191 <colspec colnum="1" colname="colone" colwidth="70" align="left"></colspec>
5192 <colspec colnum="2" colname="coltwo" colwidth="50" align="left"></colspec>
5193 <colspec colnum="3" colname="colthree" colwidth="50" align="left"></colspec>
5194 <colspec colnum="4" colname="colfour" colwidth="50" align="left"></colspec>
5195 <colspec colnum="5" colname="colfive" colwidth="50" align="left"></colspec>
5196 <colspec colnum="6" colname="colsix" colwidth="50" align="left"></colspec>
5197 <colspec colnum="7" colname="colseven" colwidth="50" align="left"></colspec>
5198 <thead>
5199 <row rowsep="1">
5200 <entry>Data</entry>
5201 <entry>ρ/Z (<xref endterm="RZ.title" linkend="RZ"></xref>)</entry>
5202 <entry>Y/X (<xref endterm="YX.title" linkend="YX"></xref>)</entry>
5203 <entry>φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>)</entry>
5204 <entry>φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)</entry>
5205 <entry>φ/η (<xref endterm="VP.title" linkend="VP"></xref>)</entry>
5206 <entry>X'/Z (<xref endterm="XZ.title" linkend="XZ"></xref>)</entry>
5207 </row>
5208 </thead>
5209 <tbody>
5210 <row rowsep="1">
5211 <entry>BJet</entry>
5212 <entry> </entry>
5213 <entry> </entry>
5214 <entry> </entry>
5215 <entry> </entry>
5216 <entry>Circle</entry>
5217 <entry> </entry>
5218 </row>
5219 <row rowsep="1">
5220 <entry>Electron</entry>
5221 <entry></entry>
5222 <entry></entry>
5223 <entry></entry>
5224 <entry></entry>
5225 <entry>Circle</entry>
5226 <entry></entry>
5227 </row>
5228 <row rowsep="1">
5229 <entry>FCAL</entry>
5230 <entry></entry>
5231 <entry></entry>
5232 <entry></entry>
5233 <entry></entry>
5234 <entry>Square/cell</entry>
5235 <entry></entry>
5236 </row>
5237 <row rowsep="1">
5238 <entry>HEC</entry>
5239 <entry>Cell</entry>
5240 <entry></entry>
5241 <entry></entry>
5242 <entry>Cell</entry>
5243 <entry>Square/cell</entry>
5244 <entry></entry>
5245 </row>
5246 <row rowsep="1">
5247 <entry>LAr</entry>
5248 <entry>Cell</entry>
5249 <entry>Cell</entry>
5250 <entry>Cell</entry>
5251 <entry>Cell</entry>
5252 <entry>Square/cell</entry>
5253 <entry></entry>
5254 </row>
5255 <row rowsep="1">
5256 <entry>MDT</entry>
5257 <entry>Circle</entry>
5258 <entry>Line</entry>
5259 <entry>Line</entry>
5260 <entry>Line</entry>
5261 <entry></entry>
5262 <entry></entry>
5263 </row>
5264 <row rowsep="1">
5265 <entry>Muon (AOD)</entry>
5266 <entry></entry>
5267 <entry></entry>
5268 <entry></entry>
5269 <entry></entry>
5270 <entry>Circle</entry>
5271 <entry></entry>
5272 </row>
5273 <row rowsep="1">
5274 <entry>Photon</entry>
5275 <entry></entry>
5276 <entry></entry>
5277 <entry></entry>
5278 <entry></entry>
5279 <entry>Circle</entry>
5280 <entry></entry>
5281 </row>
5282 <row rowsep="1">
5283 <entry>R3D</entry>
5284 <entry></entry>
5285 <entry></entry>
5286 <entry></entry>
5287 <entry>Box</entry>
5288 <entry>Box</entry>
5289 <entry></entry>
5290 </row>
5291 <row rowsep="1">
5292 <entry>RecVertex</entry>
5293 <entry>Point</entry>
5294 <entry>Ellipse</entry>
5295 <entry>Point</entry>
5296 <entry>Point</entry>
5297 <entry></entry>
5298 <entry>Ellipse</entry>
5299 </row>
5300 <row rowsep="1">
5301 <entry>RPC</entry>
5302 <entry>Box</entry>
5303 <entry>Box</entry>
5304 <entry>Box</entry>
5305 <entry>Box</entry>
5306 <entry></entry>
5307 <entry>Box</entry>
5308 </row>
5309 <row rowsep="1">
5310 <entry>SimVertex</entry>
5311 <entry>Point</entry>
5312 <entry>Point</entry>
5313 <entry>Point</entry>
5314 <entry>Point</entry>
5315 <entry></entry>
5316 <entry>Point</entry>
5317 </row>
5318 <row rowsep="1">
5319 <entry>SNP</entry>
5320 <entry>Line</entry>
5321 <entry>Line</entry>
5322 <entry>Line</entry>
5323 <entry>Line</entry>
5324 <entry>Point</entry>
5325 <entry>Line</entry>
5326 </row>
5327 <row rowsep="1">
5328 <entry>SpacePoint</entry>
5329 <entry>Point</entry>
5330 <entry>Point</entry>
5331 <entry>Point</entry>
5332 <entry>Point</entry>
5333 <entry>Points</entry>
5334 <entry>Point</entry>
5335 </row>
5336 <row rowsep="1">
5337 <entry>STr</entry>
5338 <entry>S.line</entry>
5339 <entry>Circle</entry>
5340 <entry>S.line</entry>
5341 <entry>S.line</entry>
5342 <entry>V</entry>
5343 <entry>Helix</entry>
5344 </row>
5345 <row rowsep="1">
5346 <entry>T3D</entry>
5347 <entry>Box</entry>
5348 <entry>Box</entry>
5349 <entry>Box</entry>
5350 <entry></entry>
5351 <entry>Box</entry>
5352 <entry>Box</entry>
5353 </row>
5354 <row rowsep="1">
5355 <entry>TauJet</entry>
5356 <entry></entry>
5357 <entry></entry>
5358 <entry></entry>
5359 <entry></entry>
5360 <entry>Circle</entry>
5361 <entry></entry>
5362 </row>
5363 <row rowsep="1">
5364 <entry>TGC</entry>
5365 <entry></entry>
5366 <entry>Box</entry>
5367 <entry>Box</entry>
5368 <entry>Box</entry>
5369 <entry></entry>
5370 <entry></entry>
5371 </row>
5372 <row rowsep="1">
5373 <entry>TILE</entry>
5374 <entry>Cell</entry>
5375 <entry>Cell</entry>
5376 <entry>Cell</entry>
5377 <entry></entry>
5378 <entry>Square/cell</entry>
5379 <entry></entry>
5380 </row>
5381 <row rowsep="1">
5382 <entry>Track</entry>
5383 <entry>S.line</entry>
5384 <entry>Circle</entry>
5385 <entry>S.line</entry>
5386 <entry>S.line</entry>
5387 <entry>V</entry>
5388 <entry>Helix</entry>
5389 </row>
5390 <row rowsep="1">
5391 <entry>TRT_DriftCircle barrel</entry>
5392 <entry>Line</entry>
5393 <entry>Line</entry>
5394 <entry>Line</entry>
5395 <entry></entry>
5396 <entry></entry>
5397 <entry></entry>
5398 </row>
5399 <row rowsep="1">
5400 <entry>TRT_DriftCircle endcap</entry>
5401 <entry>Line</entry>
5402 <entry></entry>
5403 <entry></entry>
5404 <entry>Line</entry>
5405 <entry></entry>
5406 <entry></entry></row>
5407 </tbody>
5408 </tgroup>
5409 </table>
5410 </para>
5411
5412 </sect1>
5413
5414 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
5415 <sect1 id="Data">
5416 <title id="Data.title">6.3 Data Selection</title>
5417
5418 <para>
5419 Selection of data is made available via the <emphasis>Data</emphasis> tab of
5420 the parameter control section in the Control Window.
5421 The various selection options are described below.
5422 The data types that are available in Atlantis are listed under
5423 Data Types (<xref endterm="DataTypes.title" linkend="DataTypes"></xref>).
5424 The graphical representation of data types in the available projections
5425 is listed under Data Representation in Projections
5426 (<xref endterm="DataRep.title" linkend="DataRep"></xref>).
5427 </para>
5428
5429 <para>
5430 <emphasis>Order</emphasis>
5431 </para>
5432
5433 <para>
5434 The order of drawing of simulated tracks (<emphasis>STr</emphasis>),
5435 reconstructed tracks (<emphasis>RTr</emphasis>) and hits
5436 (<emphasis>Hits</emphasis>) is set by selecting one of the following options:
5437
5438 <itemizedlist>
5439 <listitem>
5440 <para>
5441 <emphasis>STr RTr Hits</emphasis> (default)
5442 </para>
5443 </listitem>
5444 <listitem>
5445 <para>
5446 <emphasis>STr Hits RTr</emphasis>
5447 </para>
5448 </listitem>
5449 <listitem>
5450 <para>
5451 <emphasis>Rtr Hits STr</emphasis>
5452 </para>
5453 </listitem>
5454 </itemizedlist>
5455
5456 For the default option the simulated tracks are drawn first, then the
5457 reconstructed tracks (so with perfect reconstruction you will only see the
5458 reconstructed tracks) and finally the hits.
5459 </para>
5460
5461 <para>
5462 <emphasis>Assoc Hits To Track</emphasis>
5463
5464 The track type to which hits are assigned to:
5465
5466 <itemizedlist>
5467 <listitem>
5468 <para>
5469 <emphasis>xKalTrack</emphasis> (default)
5470 </para>
5471 </listitem>
5472 <listitem>
5473 <para>
5474 <emphasis>iPatTrack</emphasis>
5475 </para>
5476 </listitem>
5477 </itemizedlist>
5478 </para>
5479
5480 <para>
5481 <emphasis>SpacePoint Order</emphasis>
5482 </para>
5483
5484 <para>
5485 The order of drawing of spacepoints:
5486
5487 <itemizedlist>
5488 <listitem>
5489 <para>
5490 <emphasis>SpacePoint TrigSiSpacePoint</emphasis> (default)
5491 </para>
5492 </listitem>
5493 <listitem>
5494 <para>
5495 <emphasis>TrigSiSpacePoint SpacePoint</emphasis>
5496 </para>
5497 </listitem>
5498 </itemizedlist>
5499 </para>
5500
5501 <para>
5502 <emphasis>Status</emphasis>
5503 </para>
5504
5505 <para>
5506 Hierarchical lists to make data types active/inactive for drawing.
5507 </para>
5508
5509 <para>
5510 See <xref endterm="DataTypes.title" linkend="DataTypes"></xref>
5511 for a short description of the data types.
5512
5513 <itemizedlist>
5514 <listitem>
5515 <para>
5516 <emphasis>InDet</emphasis>
5517 <itemizedlist>
5518 <listitem>
5519 <para>
5520 <emphasis>Spacepoint</emphasis>
5521 </para>
5522 </listitem>
5523 <listitem>
5524 <para>
5525 <emphasis>TrigSiSpacePoint</emphasis>
5526 </para>
5527 </listitem>
5528 <listitem>
5529 <para>
5530 <emphasis>SiHit</emphasis>
5531 </para>
5532 </listitem>
5533 <listitem>
5534 <para>
5535 <emphasis>SiCluster</emphasis>
5536 </para>
5537 </listitem>
5538 <listitem>
5539 <para>
5540 <emphasis>TRT_DriftCircle</emphasis>
5541 </para>
5542 </listitem>
5543 <listitem>
5544 <para>
5545 <emphasis>STr</emphasis>
5546 </para>
5547 </listitem>
5548 <listitem>
5549 <para>
5550 <emphasis>Track Collections</emphasis>
5551 </para>
5552 </listitem>
5553 <listitem>
5554 <para>
5555 <emphasis>SimVertex</emphasis>
5556 </para>
5557 </listitem>
5558 <listitem>
5559 <para>
5560 <emphasis>RecVertex</emphasis>
5561 </para>
5562 </listitem>
5563 </itemizedlist>
5564 </para>
5565 </listitem>
5566 <listitem>
5567 <para>
5568 <emphasis>Calo</emphasis>
5569 <itemizedlist>
5570 <listitem>
5571 <para>
5572 <emphasis>LAr</emphasis>
5573 </para>
5574 </listitem>
5575 <listitem>
5576 <para>
5577 <emphasis>TILE</emphasis>
5578 </para>
5579 </listitem>
5580 <listitem>
5581 <para>
5582 <emphasis>HEC</emphasis>
5583 </para>
5584 </listitem>
5585 <listitem>
5586 <para>
5587 <emphasis>FCAL</emphasis>
5588 </para>
5589 </listitem>
5590 <listitem>
5591 <para>
5592 <emphasis>SNP</emphasis>
5593 </para>
5594 </listitem>
5595 <listitem>
5596 <para>
5597 <emphasis>EmTauROI</emphasis>
5598 </para>
5599 </listitem>
5600 <listitem>
5601 <para>
5602 <emphasis>JetROI</emphasis>
5603 </para>
5604 </listitem>
5605 </itemizedlist>
5606 </para>
5607 </listitem>
5608 <listitem>
5609 <para>
5610 <emphasis>MuonDet</emphasis>
5611 <itemizedlist>
5612 <listitem>
5613 <para>
5614 <emphasis>MDT</emphasis>
5615 </para>
5616 </listitem>
5617 <listitem>
5618 <para>
5619 <emphasis>CSC</emphasis>
5620 </para>
5621 </listitem>
5622 <listitem>
5623 <para>
5624 <emphasis>RPC</emphasis>
5625 </para>
5626 </listitem>
5627 <listitem>
5628 <para>
5629 <emphasis>TGC</emphasis>
5630 </para>
5631 </listitem>
5632 <listitem>
5633 <para>
5634 <emphasis>MSeg</emphasis>
5635 </para>
5636 </listitem>
5637 <listitem>
5638 <para>
5639 <emphasis>RMTr</emphasis>
5640 </para>
5641 </listitem>
5642 <listitem>
5643 <para>
5644 <emphasis>SMTr</emphasis>
5645 </para>
5646 </listitem>
5647 </itemizedlist>
5648 </para>
5649 </listitem>
5650 <listitem>
5651 <para>
5652 <emphasis>AOD</emphasis>
5653 <itemizedlist>
5654 <listitem>
5655 <para>
5656 <emphasis>BJet</emphasis>
5657 </para>
5658 </listitem>
5659 <listitem>
5660 <para>
5661 <emphasis>Electron</emphasis>
5662 </para>
5663 </listitem>
5664 <listitem>
5665 <para>
5666 <emphasis>Muon</emphasis>
5667 </para>
5668 </listitem>
5669 <listitem>
5670 <para>
5671 <emphasis>Photon</emphasis>
5672 </para>
5673 </listitem>
5674 <listitem>
5675 <para>
5676 <emphasis>TauJet</emphasis>
5677 </para>
5678 </listitem>
5679 </itemizedlist>
5680 </para>
5681 </listitem>
5682 <listitem>
5683 <para>
5684 <emphasis>ATLAS</emphasis>
5685 <itemizedlist>
5686 <listitem>
5687 <para>
5688 <emphasis>Jet</emphasis>
5689 </para>
5690 </listitem>
5691 <listitem>
5692 <para>
5693 <emphasis>ETMis Collections</emphasis>
5694 </para>
5695 </listitem>
5696 </itemizedlist>
5697 </para>
5698 </listitem>
5699 </itemizedlist>
5700 </para>
5701
5702 <para>
5703 <emphasis>Cuts</emphasis>
5704 </para>
5705
5706 <para>
5707 Finally, different cuts can be applied to the selected data. See
5708 <xref endterm="Cuts.title" linkend="Cuts"></xref>.
5709 </para>
5710
5711 </sect1>
5712
5713 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
5714 <sect1 id="Cuts">
5715 <title id="Cuts.title">6.4 Cuts</title>
5716
5717 <para>
5718 Cuts may be applied to select the data to be displayed.
5719 They are grouped (InDet
5720 (<xref endterm="CutsInDet.title" linkend="CutsInDet"></xref>), Calo
5721 (<xref endterm="CutsCalo.title" linkend="CutsCalo"></xref>), MuonDet
5722 (<xref endterm="CutsMuon.title" linkend="CutsMuon"></xref>), AOD
5723 (<xref endterm="CutsAOD.title" linkend="CutsAOD"></xref>) and
5724 ATLAS (<xref endterm="CutsATLAS.title" linkend="CutsATLAS"></xref>))
5725 and are accessible via the <emphasis>Cuts</emphasis> tab of the parameter
5726 control section in the Control Window.
5727 </para>
5728
5729 <para>
5730 Cuts can be made on tracks, track associations, hits, calorimeter cells,
5731 TRT straws, angular regions.
5732 </para>
5733
5734 <para>
5735 Each cut can be switched on or off by clicking on the small check-box on the
5736 left hand side.
5737 The value of each cut is displayed in the white field and is modified by
5738 changing the value in the field, followed by pressing the
5739 <emphasis>Enter</emphasis> key on the keyboard.
5740 </para>
5741
5742 <para>
5743 Cuts which act on real numbers may select values either < or >
5744 the cut value. The selection of < or > is
5745 toggled by clicking on them with the left mouse button.
5746 </para>
5747
5748 <para>
5749 For cuts applied to integer values a left-click causes a pull down menu to
5750 appear where you may select according to the C/JAVA syntax:
5751 =, != (not equal), <, <=, > or >=.
5752 </para>
5753
5754 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
5755 <sect2 id="CutsInDet">
5756 <title id="CutsInDet.title">6.4.1 Cuts for Inner Detector (InDet)</title>
5757
5758 <para>
5759 Most cuts are applied to tracks.
5760 </para>
5761
5762 <para>
5763 If the track association of hits or calorimeter cells is known, they may be
5764 selected according to the tracks - with their cuts - they are associated to.
5765 See <emphasis>Hits By STr</emphasis> and <emphasis>Hits By Track</emphasis>.
5766
5767 <itemizedlist>
5768 <listitem>
5769 <para>
5770 <emphasis>|Pt|</emphasis> :
5771 (tracks) transverse momentum [GeV/c]
5772 </para>
5773 </listitem>
5774 <listitem>
5775 <para>
5776 <emphasis>|d0|</emphasis> :
5777 (tracks) distance of closest approach to the beam axis [cm]
5778 </para>
5779 </listitem>
5780 <listitem>
5781 <para>
5782 <emphasis>|z0|</emphasis> :
5783 (tracks) distance in Z from nominal origin at d0 [cm]
5784 </para>
5785 </listitem>
5786 <listitem>
5787 <para>
5788 <emphasis>|d0 Loose|</emphasis> :
5789 (tracks) outer loose d0 cut [cm]
5790 </para>
5791 </listitem>
5792 <listitem>
5793 <para>
5794 <emphasis>|z0-ZVtx|</emphasis> :
5795 (tracks) distance in Z from primary vertex at d0 [cm]
5796 </para>
5797 </listitem>
5798 <listitem>
5799 <para>
5800 <emphasis>Num SpacePoint</emphasis> :
5801 (tracks) number of associated silicon space points
5802 </para>
5803 </listitem>
5804 <listitem>
5805 <para>
5806 <emphasis>|STr (code)|</emphasis> :
5807 (tracks) code of simulated track
5808 </para>
5809 </listitem>
5810 <listitem>
5811 <para>
5812 <emphasis>STr (barcode)</emphasis> :
5813 (tracks) kine number of simulated track
5814 </para>
5815 </listitem>
5816 <listitem>
5817 <para>
5818 <emphasis>STr type</emphasis> :
5819 (tracks) type of simulated track
5820 <itemizedlist>
5821 <listitem>
5822 <para>
5823 <emphasis>charged hadron</emphasis> (default)
5824 </para>
5825 </listitem>
5826 <listitem>
5827 <para>
5828 <emphasis>tau</emphasis>
5829 </para>
5830 </listitem>
5831 <listitem>
5832 <para>
5833 <emphasis>electron</emphasis>
5834 </para>
5835 </listitem>
5836 <listitem>
5837 <para>
5838 <emphasis>muon</emphasis>
5839 </para>
5840 </listitem>
5841 <listitem>
5842 <para>
5843 <emphasis>neutral hadron</emphasis>
5844 </para>
5845 </listitem>
5846 <listitem>
5847 <para>
5848 <emphasis>photon</emphasis>
5849 </para>
5850 </listitem>
5851 <listitem>
5852 <para>
5853 <emphasis>neutrino</emphasis>
5854 </para>
5855 </listitem>
5856 </itemizedlist>
5857 </para>
5858 </listitem>
5859 <listitem>
5860 <para>
5861 <emphasis>SimVertex</emphasis>
5862 : (tracks) originating simulated vertex (0=primary)
5863 </para>
5864 </listitem>
5865 <listitem>
5866 <para>
5867 <emphasis>SCT/Pixel</emphasis> : ...
5868 <itemizedlist>
5869 <listitem>
5870 <para>
5871 <emphasis>All</emphasis> (default)
5872 </para>
5873 </listitem>
5874 <listitem>
5875 <para>
5876 <emphasis>Endcap-</emphasis>: ...
5877 </para>
5878 </listitem>
5879 <listitem>
5880 <para>
5881 <emphasis>Barrel</emphasis>: ...
5882 </para>
5883 </listitem>
5884 <listitem>
5885 <para>
5886 <emphasis>Endcap+</emphasis>: ...
5887 </para>
5888 </listitem>
5889 </itemizedlist>
5890 </para>
5891 </listitem>
5892 <listitem>
5893 <para>
5894 <emphasis>TRT_DriftCircle</emphasis> : ...
5895 <itemizedlist>
5896 <listitem>
5897 <para>
5898 <emphasis>All</emphasis> (default)
5899 </para>
5900 </listitem>
5901 <listitem>
5902 <para>
5903 <emphasis>Barrel-</emphasis>: ...
5904 </para>
5905 </listitem>
5906 <listitem>
5907 <para>
5908 <emphasis>Barrel+</emphasis>: ...
5909 </para>
5910 </listitem>
5911 </itemizedlist>
5912 </para>
5913 </listitem>
5914 <listitem>
5915 <para>
5916 <emphasis>Track Index</emphasis>
5917 : (tracks) identifier of reconstructed track
5918 </para>
5919 </listitem>
5920 <listitem>
5921 <para>
5922 <emphasis>Hits By STr</emphasis> :
5923 <itemizedlist>
5924 <listitem>
5925 <para>
5926 <emphasis>All</emphasis> (default)
5927 </para>
5928 </listitem>
5929 <listitem>
5930 <para>
5931 <emphasis>Connected</emphasis>
5932 : hits connected to simulated tracks
5933 </para>
5934 </listitem>
5935 <listitem>
5936 <para>
5937 <emphasis>Unconnected</emphasis>
5938 : hits unconnected to simulated tracks
5939 </para>
5940 </listitem>
5941 </itemizedlist>
5942 </para>
5943 </listitem>
5944 <listitem>
5945 <para>
5946 <emphasis>Hits By Track</emphasis> :
5947 <itemizedlist>
5948 <listitem>
5949 <para>
5950 <emphasis>All</emphasis> (default)
5951 </para>
5952 </listitem>
5953 <listitem>
5954 <para>
5955 <emphasis>Connected</emphasis>
5956 : hits connected to reconstructed tracks
5957 </para>
5958 </listitem>
5959 <listitem>
5960 <para>
5961 <emphasis>Unconnected</emphasis>
5962 : hits unconnected to reconstructed tracks
5963 </para>
5964 </listitem>
5965 </itemizedlist>
5966 </para>
5967 </listitem>
5968 <listitem>
5969 <para>
5970 <emphasis>Hit type</emphasis>:
5971 <itemizedlist>
5972 <listitem>
5973 <para>
5974 <emphasis>noise</emphasis> : noise hits (other hits)
5975 </para>
5976 </listitem>
5977 <listitem>
5978 <para>
5979 <emphasis>good</emphasis>
5980 : good hits (associated to tracks, or passing the filter
5981 (<xref endterm="Fil.title" linkend="Fil"></xref>))
5982 </para>
5983 </listitem>
5984 <listitem>
5985 <para>
5986 <emphasis>all</emphasis> (default)
5987 </para>
5988 </listitem>
5989 </itemizedlist>
5990 </para>
5991 </listitem>
5992 <listitem>
5993 <para>
5994 <emphasis>Group</emphasis>
5995 : group number of silicon hit: 0 = noise. See
5996 <xref endterm="Fil.title" linkend="Fil"></xref>.
5997 </para>
5998 </listitem>
5999 <listitem>
6000 <para>
6001 <emphasis>TRT Threshold</emphasis>: threshold for TRT Straws
6002 <itemizedlist>
6003 <listitem>
6004 <para>
6005 <emphasis>high</emphasis> (default)
6006 </para>
6007 </listitem>
6008 <listitem>
6009 <para>
6010 <emphasis>low</emphasis>
6011 </para>
6012 </listitem>
6013 </itemizedlist>
6014 </para>
6015 </listitem>
6016 </itemizedlist>
6017 </para>
6018
6019 </sect2>
6020
6021 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6022 <sect2 id="CutsCalo">
6023 <title id="CutsCalo.title">6.4.2 Cuts for Calorimeters (Calo)</title>
6024
6025 <para>
6026 <itemizedlist>
6027 <listitem>
6028 <para>
6029 <emphasis>|Jet Et|</emphasis>
6030 </para>
6031 </listitem>
6032 <listitem>
6033 <para>
6034 <emphasis>|LAr Energy|</emphasis>: energy deposit [MeV]
6035 </para>
6036 </listitem>
6037 <listitem>
6038 <para>
6039 <emphasis>|Tile Energy|</emphasis>: energy deposit [MeV]
6040 </para>
6041 </listitem>
6042 <listitem>
6043 <para>
6044 <emphasis>|HEC Energy|</emphasis>: energy deposit [MeV]
6045 </para>
6046 </listitem>
6047 <listitem>
6048 <para>
6049 <emphasis>|FCAL Energy|</emphasis>: energy deposit [MeV]
6050 </para>
6051 </listitem>
6052 <listitem>
6053 <para>
6054 <emphasis>FCAL</emphasis>
6055 <itemizedlist>
6056 <listitem>
6057 <para>
6058 <emphasis>All</emphasis> (default)
6059 </para>
6060 </listitem>
6061 <listitem>
6062 <para>
6063 <emphasis>Endcap-</emphasis>
6064 </para>
6065 </listitem>
6066 <listitem>
6067 <para>
6068 <emphasis>Endcap+</emphasis>
6069 </para>
6070 </listitem>
6071 </itemizedlist>
6072 </para>
6073 </listitem>
6074 <listitem>
6075 <para>
6076 <emphasis>LAr</emphasis>
6077 <itemizedlist>
6078 <listitem>
6079 <para>
6080 <emphasis>All</emphasis> (default)
6081 </para>
6082 </listitem>
6083 <listitem>
6084 <para>
6085 <emphasis>Endcap-</emphasis>
6086 </para>
6087 </listitem>
6088 <listitem>
6089 <para>
6090 <emphasis>Endcap+</emphasis>
6091 </para>
6092 </listitem>
6093 </itemizedlist>
6094 </para>
6095 </listitem>
6096 <listitem>
6097 <para>
6098 <emphasis>HEC</emphasis>
6099 <itemizedlist>
6100 <listitem>
6101 <para>
6102 <emphasis>All</emphasis> (default)
6103 </para>
6104 </listitem>
6105 <listitem>
6106 <para>
6107 <emphasis>Endcap-</emphasis>
6108 </para>
6109 </listitem>
6110 <listitem>
6111 <para>
6112 <emphasis>Endcap+</emphasis>
6113 </para>
6114 </listitem>
6115 </itemizedlist>
6116 </para>
6117 </listitem>
6118 <listitem>
6119 <para>
6120 <emphasis>|Cluster ET|</emphasis>
6121 : cluster to which the cell is associated
6122 </para>
6123 </listitem>
6124 <listitem>
6125 <para>
6126 <emphasis>Cluster</emphasis>
6127 </para>
6128 <para>Cluster to which the cell is associated
6129 </para>
6130 </listitem>
6131 <listitem>
6132 <para>
6133 <emphasis>|LVL1 Trigger Energy|</emphasis>
6134 </para>
6135 </listitem>
6136 </itemizedlist>
6137 </para>
6138
6139 </sect2>
6140
6141 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6142 <sect2 id="CutsMuon">
6143 <title id="CutsMuon.title">6.4.3 Cuts for Muon Detector (MuonDet)</title>
6144
6145 <para>
6146 No cuts available yet.
6147 </para>
6148
6149 </sect2>
6150
6151 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6152 <sect2 id="CutsAOD">
6153 <title id="CutsAOD.title">6.4.4 Cuts for Analysis Object Data (AOD)</title>
6154
6155 <para>
6156 <itemizedlist>
6157 <listitem>
6158 <para>
6159 <emphasis>|BJet Pt|</emphasis>
6160 : B-tagged Jet transverse momentum
6161 </para>
6162 </listitem>
6163 <listitem>
6164 <para>
6165 <emphasis>BJet lhSig</emphasis>
6166 : B-tagged Jet likelihood significance, combined B-tagging algorithms.
6167 </para>
6168 </listitem>
6169 <listitem>
6170 <para>
6171 <emphasis>BJet weight</emphasis>
6172 : B-tagged Jet B-tagging algorithm's weight
6173 </para>
6174 </listitem>
6175 <listitem>
6176 <para>
6177 <emphasis>|Electron Pt|</emphasis>
6178 : Electron transverse momentum
6179 </para>
6180 </listitem>
6181 <listitem>
6182 <para>
6183 <emphasis>Electron isEM (*)</emphasis>
6184 : Electron electromagnetic criteria passed (bitmap)
6185 </para>
6186 </listitem>
6187 <listitem>
6188 <para>
6189 <emphasis>Electron eOverp</emphasis>
6190 : Electron ratio of energy over momentum
6191 </para>
6192 </listitem>
6193 <listitem>
6194 <para>
6195 <emphasis>|Muon Pt|</emphasis>
6196 : Muon transverse momentum
6197 </para>
6198 </listitem>
6199 <listitem>
6200 <para>
6201 <emphasis>Muon chi2</emphasis> : Muon fit chi2
6202 </para>
6203 </listitem>
6204 <listitem>
6205 <para>
6206 <emphasis>|Photon Pt|</emphasis>
6207 : Photon transverse momentum
6208 </para>
6209 </listitem>
6210 <listitem>
6211 <para>
6212 <emphasis>Photon isEM (*)</emphasis>
6213 : Photon electromagnetic criteria passed (bitmap)
6214 </para>
6215 </listitem>
6216 <listitem>
6217 <para>
6218 <emphasis>|TauJet Pt|</emphasis>
6219 : Tau transverse momentum
6220 </para>
6221 </listitem>
6222 <listitem>
6223 <para>
6224 <emphasis>|TauJet Charge|</emphasis>
6225 : Tau total charge
6226 </para>
6227 </listitem>
6228 <listitem>
6229 <para>
6230 <emphasis>TauJet NumTrack</emphasis>
6231 : Tau number of tracks
6232 </para>
6233 </listitem>
6234 <listitem>
6235 <para>
6236 <emphasis>TauJet isolFrac</emphasis>
6237 : Tau isolation fraction
6238 </para>
6239 </listitem>
6240 <listitem>
6241 <para>
6242 <emphasis>TauJet logLhRatio</emphasis>
6243 : Tau log-likelihood ratio between tau and jet
6244 </para>
6245 </listitem>
6246 </itemizedlist>
6247 </para>
6248
6249 <para>
6250 <emphasis>N.B.</emphasis>
6251 </para>
6252
6253 <para>
6254 <emphasis>(*)</emphasis> Cut-logic for isEM: int required.
6255 Logic in bitmap: "1" means "do not care". Non-passing of algorithm is allowed.
6256 "0" means: "is required to be passed". E.g. 16 (binary: 1000) means that
6257 algorithm encoded into fourth bit is allowed to have failed.
6258 </para>
6259
6260 </sect2>
6261
6262 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6263 <sect2 id="CutsATLAS">
6264 <title id="CutsATLAS.title">6.4.5 Cuts for whole Detector (ATLAS)</title>
6265
6266 <para>
6267 <itemizedlist>
6268 <listitem>
6269 <para>
6270 <emphasis>Index</emphasis>
6271 : (tracks) in the range 0 to numTracks-1
6272 </para>
6273 </listitem>
6274 <listitem>
6275 <para>
6276 <emphasis>Module</emphasis> : ...
6277 </para>
6278 </listitem>
6279 <listitem>
6280 <para>
6281 <emphasis>Layer</emphasis> : ...
6282 </para>
6283 </listitem>
6284 <listitem>
6285 <para>
6286 <emphasis>Cut φ</emphasis>
6287 : (angular region) hits and tracks in the range
6288 φ±φ<subscript>cut</subscript>
6289 </para>
6290 </listitem>
6291 <listitem>
6292 <para>
6293 <emphasis>φ</emphasis>
6294 : (angular region) ...
6295 </para>
6296 </listitem>
6297 <listitem>
6298 <para>
6299 <emphasis>Cut η</emphasis>
6300 : (angular region) hits and tracks in the range
6301 η±η<subscript>cut</subscript>
6302 </para>
6303 </listitem>
6304 <listitem>
6305 <para>
6306 <emphasis>η</emphasis>
6307 : (angular region) ...
6308 </para>
6309 </listitem>
6310 <listitem>
6311 <para>
6312 <emphasis>ByList</emphasis>
6313 : (list) only data in the currently selected list
6314 (<xref endterm="Lists.title" linkend="Lists"></xref>) are shown
6315 </para>
6316 </listitem>
6317 <listitem>
6318 <para>
6319 <emphasis>Summary</emphasis>
6320 : a summary of the effects of the currently applied cuts
6321 is shown in the
6322 output window (<xref endterm="OutputDisplay.title" linkend="OutputDisplay"></xref>).
6323 </para>
6324 </listitem>
6325 </itemizedlist>
6326 </para>
6327
6328 </sect2>
6329
6330 </sect1>
6331
6332 </chapter>
6333
6334 <!--=======================================================================-->
6335 <chapter id="Detector">
6336 <title id="Detector.title">Detector</title>
6337
6338 <para>
6339 This chapter describes specific elements, data and their attributes of the
6340 Whole Detector (ATLAS)
6341 (<xref endterm="ATLAS.title" linkend="ATLAS"></xref>) and
6342 its subsystems Inner Detector (InDet)
6343 (<xref endterm="InDet.title" linkend="InDet"></xref>),
6344 Calorimeters (Calo) (<xref endterm="Calo.title" linkend="Calo"></xref>) and
6345 Muon Detector (Muon) (<xref endterm="MuonDet.title" linkend="MuonDet"></xref>).
6346 </para>
6347
6348 <para>
6349 Section Analysis Object Data (AOD)
6350 (<xref endterm="AOD.title" linkend="AOD"></xref>)
6351 describes data and their attributes from AOD collections.
6352 </para>
6353
6354 <para>
6355 Section General Information
6356 (<xref endterm="GenInfo.title" linkend="GenInfo"></xref>)
6357 contains information about generally used attributes.
6358 </para>
6359
6360 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6361 <sect1 id="InDet">
6362 <title id="InDet.title">7.1 Inner Detector (InDet)</title>
6363
6364 <para>
6365 Elements, attributes and control are grouped into:
6366
6367 <itemizedlist>
6368 <listitem>
6369 <para>
6370 <emphasis>SpacePoint</emphasis>
6371 (<xref endterm="S3D.title" linkend="S3D"></xref>)
6372 : silicon space points
6373 </para>
6374 <para>
6375 SpacePoint hits may be cleaned with the Silicon hit filter
6376 (<xref endterm="Fil.title" linkend="Fil"></xref>).
6377 </para>
6378 </listitem>
6379 <listitem>
6380 <para>
6381 <emphasis>PixelRDO</emphasis>
6382 (<xref endterm="PixelRDO.title" linkend="PixelRDO"></xref>)
6383 : Pixel Raw Data Object
6384 </para>
6385 </listitem>
6386 <listitem>
6387 <para>
6388 <emphasis>TrigSiSpacePoint</emphasis>
6389 (<xref endterm="TrigS3D.title" linkend="TrigS3D"></xref>)
6390 : Online Silicon 3D Space Points
6391 </para>
6392 </listitem>
6393 <listitem>
6394 <para>
6395 <emphasis>SiHit</emphasis>
6396 (<xref endterm="SiHit.title" linkend="SiHit"></xref>)
6397 : Geant Silicon Hits
6398 </para>
6399 </listitem>
6400 <listitem>
6401 <para>
6402 <emphasis>SiCluster</emphasis>
6403 (<xref endterm="SiCluster.title" linkend="SiCluster"></xref>) :
6404 Silicon Cluster
6405 </para>
6406 </listitem>
6407 <listitem>
6408 <para>
6409 <emphasis>SiClusterRDO</emphasis>
6410 (<xref endterm="SiClusterRDO.title" linkend="SiClusterRDO"></xref>) :
6411 Silicon Cluster Raw Data Object
6412 </para>
6413 </listitem>
6414 <listitem>
6415 <para>
6416 <emphasis>TRT_DriftCircle</emphasis>
6417 (<xref endterm="TRT.title" linkend="TRT"></xref>) : TRT straws
6418 </para>
6419 </listitem>
6420 <listitem>
6421 <para>
6422 <emphasis>STr</emphasis>
6423 (<xref endterm="STr.title" linkend="STr"></xref>)
6424 : simulated tracks
6425 </para>
6426 </listitem>
6427 <listitem>
6428 <para>
6429 <emphasis>Segment</emphasis>
6430 (<xref endterm="InDetSegment.title" linkend="InDetSegment"></xref>)
6431 : Reconstructed InDet Segment Collections
6432 </para>
6433 </listitem>
6434 <listitem>
6435 <para>
6436 <emphasis>Track</emphasis>
6437 (<xref endterm="InDetTrack.title" linkend="InDetTrack"></xref>)
6438 : Reconstructed Track Collections
6439 </para>
6440 </listitem>
6441 <listitem>
6442 <para>
6443 <emphasis>SimVertex</emphasis>
6444 (<xref endterm="SVx.title" linkend="SVx"></xref>)
6445 : simulated vertices
6446 </para>
6447 </listitem>
6448 <listitem>
6449 <para>
6450 <emphasis>RecVertex</emphasis>
6451 (<xref endterm="RVx.title" linkend="RVx"></xref>)
6452 : reconstructed vertices
6453 </para>
6454 </listitem>
6455 <listitem>
6456 <para>
6457 <emphasis>Hit Filter</emphasis>
6458 (<xref endterm="Fil.title" linkend="Fil"></xref>)
6459 : Hit Filter Setup
6460 </para>
6461 </listitem>
6462 </itemizedlist>
6463 </para>
6464
6465 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6466 <sect2 id="S3D">
6467 <title id="S3D.title">7.1.1 Silicon 3D SpacePoints (SpacePoint)</title>
6468
6469 <para>
6470 Space points from silicon pixel
6471 (<xref endterm="SiliconPixels.title" linkend="SiliconPixels"></xref>)
6472 clusters and calculated from the low angle stereo silicon strips
6473 (<xref endterm="SiliconStrips.title" linkend="SiliconStrips"></xref>)
6474 are called S3D hits.
6475 </para>
6476
6477 <para>
6478 The following element and attribute items are available and can be controlled:
6479
6480 <itemizedlist>
6481 <listitem>
6482 <para>
6483 <emphasis>Color Function</emphasis>
6484 </para>
6485 <para>
6486 The color of each hit is defined by the color function selected from the
6487 following options:
6488 <itemizedlist>
6489 <listitem>
6490 <para>
6491 <emphasis>Constant</emphasis> (default)
6492 </para>
6493 <para>
6494 in which case the color defined by item <emphasis>Constant</emphasis> is
6495 used for all hits
6496 </para>
6497 </listitem>
6498 <listitem>
6499 <para>
6500 <emphasis>Simulated Track</emphasis>
6501 </para>
6502 <para>
6503 the colors of unconnected and shared hits can be selected by items
6504 <emphasis>Unconnected</emphasis> and <emphasis>Shared</emphasis>
6505 </para>
6506 </listitem>
6507 <listitem>
6508 <para>
6509 <emphasis>Reconstructed Track</emphasis>
6510 </para>
6511 <para>
6512 the colors of unconnected and shared hits can be selected
6513 </para>
6514 </listitem>
6515 <listitem>
6516 <para>
6517 <emphasis>SubDetector</emphasis>
6518 </para>
6519 <para>
6520 (Barrel, Endcap+, Endcap-),
6521 </para>
6522 </listitem>
6523 <listitem>
6524 <para>
6525 <emphasis>Group</emphasis>
6526 </para>
6527 <para>
6528 as determined by the filter
6529 (<xref endterm="Fil.title" linkend="Fil"></xref>),
6530 the color of ungrouped hits can be selected
6531 </para>
6532 </listitem>
6533 <listitem>
6534 <para>
6535 <emphasis>Layer</emphasis>.
6536 </para>
6537 </listitem>
6538 </itemizedlist>
6539 </para>
6540 </listitem>
6541 <listitem>
6542 <para>
6543 <emphasis>Constant</emphasis>
6544 </para>
6545 <para>
6546 The color of all hits, used for the <emphasis>Constant</emphasis> color
6547 function.
6548 </para>
6549 </listitem>
6550 <listitem>
6551 <para>
6552 <emphasis>Unconnected</emphasis>
6553 </para>
6554 <para>
6555 The color used for unconnected hits.
6556 </para>
6557 </listitem>
6558 <listitem>
6559 <para>
6560 <emphasis>Shared</emphasis>
6561 </para>
6562 <para>
6563 The color used for shared hits.
6564 </para>
6565 </listitem>
6566 <listitem>
6567 <para>
6568 <emphasis>Ungrouped</emphasis>
6569 </para>
6570 </listitem>
6571 <listitem>
6572 <para>
6573 <emphasis>Symbol Size</emphasis>
6574 </para>
6575 <para>
6576 The size in pixels of the symbol used to represent hits.
6577 </para>
6578 </listitem>
6579 <listitem>
6580 <para>
6581 <emphasis>Symbol</emphasis>
6582 </para>
6583 <para>
6584 The type of symbol used to represent hits.
6585 </para>
6586 </listitem>
6587 <listitem>
6588 <para>
6589 <emphasis>Frame</emphasis>
6590 </para>
6591 </listitem>
6592 <listitem>
6593 <para>
6594 <emphasis>Frame Width</emphasis>
6595 </para>
6596 </listitem>
6597 <listitem>
6598 <para>
6599 <emphasis>Noise Size</emphasis>
6600 </para>
6601 </listitem>
6602 <listitem>
6603 <para>
6604 <emphasis>Noise</emphasis>
6605 </para>
6606 </listitem>
6607 </itemizedlist>
6608
6609 See Graphics Attributes of Hits
6610 (<xref endterm="Attributes.title" linkend="Attributes"></xref>)
6611 for a description of graphics parameters related to hits.
6612 </para>
6613
6614 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6615 <sect3 id="SiliconPixels">
6616 <title id="SiliconPixels.title">7.1.1.1 Silicon Pixels</title>
6617
6618 <para>
6619 Silicon pixels give directly 3D positions. From each cluster of pixels a
6620 space point is calculated. The pixel dimensions are
6621 50µm×400µm. The barrel of the pixel detector has three
6622 layers at 4, 11 and 15 cm, respectively, which provide position measurements
6623 with a resolution of 12 µm in ρ-φ and 66 µm in Z.
6624 The endcap has four layers at ±35, ±67, ±95 and
6625 ±115 cm, respectively, which provide position measurements with a
6626 resolution of 12 µm in ρ-φ and 77 µm in ρ.
6627 </para>
6628
6629 </sect3>
6630
6631 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6632 <sect3 id="SiliconStrips">
6633 <title id="SiliconStrips.title">7.1.1.2 Silicon Strips</title>
6634
6635 <para>
6636 To be filled.
6637 </para>
6638
6639 </sect3>
6640
6641 </sect2>
6642
6643 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6644 <sect2 id="PixelRDO">
6645 <title id="PixelRDO.title">7.1.2 Pixel Raw Data Object (PixelRDO)</title>
6646
6647 <para>
6648 To be filled!
6649 </para>
6650
6651 </sect2>
6652
6653 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6654 <sect2 id="TrigS3D">
6655 <title id="TrigS3D.title">7.1.3 Online Silicon 3D Space Points (TrigSiSpacePoint)</title>
6656
6657 <para>
6658 To be filled!
6659 </para>
6660
6661 </sect2>
6662
6663 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6664 <sect2 id="SiHit">
6665 <title id="SiHit.title">7.1.4 Geant Silicon Hits (SiHit)</title>
6666
6667 <para>
6668 To be filled!
6669 </para>
6670
6671 </sect2>
6672
6673 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6674 <sect2 id="SiCluster">
6675 <title id="SiCluster.title">7.1.5 Silicon Cluster (SiCluster)</title>
6676
6677 <para>
6678 Silicon clusters are formed from groups of neighbouring silicon strips.
6679 In the barrel these silicon strips are either parallel to the beam axis
6680 (φ-strips) or inclined by either +0.04 radians = 2.3° (u-strips)
6681 or by -0.04 radians (v-strips). In the endcaps the φ-strips are
6682 perpendicular to the cylinder axis. Each layer contains φ-strips and
6683 either u-strips or v-strips (alternating between neighbouring layers) to
6684 allow for low angle stereo. If both such strips fire, when a charged
6685 particle traverses the layer, a space point can be calculated. If more
6686 than one particle traverse the same layer in close proximity ghost space
6687 points are produced.
6688 </para>
6689
6690 <para>
6691 For barrel layers the φ-ρ position of a space point is taken
6692 from the position of the φ strip. Z is calculated through low angle
6693 stereo.
6694 For endcap the φ-Z position is taken from the φ-strip and ρ is
6695 calculated through low angle stereo. Each barrel space point is measured
6696 with a precision of 16µm in ρ-φ and 580 µm in Z,
6697 respectively. Two tracks can be distinguished if separated by more than
6698 ≈200 µm.
6699 </para>
6700
6701 <para>
6702 The distance between φ strips and the u- or v- strips in the same
6703 module is 400 µm. The calculated value of Z for the barrel and ρ
6704 for the endcap depends of the direction of the track passing through the
6705 module. As this is normally unknown, most space point calculations assume
6706 particles of infinite momentum coming from X, Y, Z=0.
6707 </para>
6708
6709 <para>
6710 There are four layers in the barrel between 35, and 115 cm, and nine layers in
6711 the endcap between ±82 and ±276 cm.
6712 </para>
6713
6714 <para>
6715 <emphasis>Graphical Representation</emphasis>
6716 </para>
6717
6718 <para>
6719 The clusters are represented graphically as a line segment joining their
6720 two endpoints.
6721 </para>
6722
6723 <para>
6724 The color of each hit is defined by the <emphasis>color function</emphasis>
6725 which may be either
6726
6727 <itemizedlist>
6728 <listitem>
6729 <para>
6730 constant, in which case the <emphasis>constant</emphasis>
6731 color is used for all hits,
6732 </para>
6733 </listitem>
6734 </itemizedlist>
6735
6736 or it may vary with each hit being given the color of its associated
6737
6738 <itemizedlist>
6739 <listitem>
6740 <para>
6741 simulated track.
6742 The colors of <emphasis>unconnected</emphasis> and
6743 <emphasis>shared</emphasis> hits can be selected.
6744 </para>
6745 </listitem>
6746 <listitem>
6747 <para>
6748 reconstructed track.
6749 The colors of <emphasis>unconnected</emphasis> and
6750 <emphasis>shared</emphasis> hits can be selected.
6751 </para>
6752 </listitem>
6753 <listitem>
6754 <para>
6755 subdetector. (Barrel,Endcap+,Endcap-)
6756 </para>
6757 </listitem>
6758 <listitem>
6759 <para>
6760 layer.
6761 </para>
6762 </listitem>
6763 <listitem>
6764 <para>
6765 orientation. (φ-strips, u-strips or v-strips)
6766 </para>
6767 </listitem>
6768 </itemizedlist>
6769 </para>
6770
6771 <para>
6772 More information about colors in Atlantis is given in
6773 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
6774 </para>
6775
6776 </sect2>
6777
6778 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6779 <sect2 id="SiClusterRDO">
6780 <title id="SiClusterRDO.title">7.1.6 Silicon Cluster Raw Data Object (SiClusterRDO)</title>
6781
6782 <para>
6783 To be filled!
6784 </para>
6785
6786 </sect2>
6787
6788 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6789 <sect2 id="TRT">
6790 <title id="TRT.title">7.1.7 Transition Radiation Tracker (TRT_DriftCircle)</title>
6791
6792 <para>
6793 The TRT barrel has straws parallel to the beam axis in the barrel and
6794 straws perpendicular to the beam axis in the endcap. The data from each
6795 TRT straw is best represented as a circle, however, in practice the radius
6796 of each straw (2mm) is so small compared to the length of a track segment
6797 (55cm) that when looking at such a track segment the circle can be
6798 adequately approximated as a straight line with a length given by twice
6799 the drift radius. The barrel straws are represented as lines perpendicular
6800 to a radial line in the
6801 φ/ρ (<xref endterm="FR.title" linkend="FR"></xref>) and
6802 Y/X (<xref endterm="YX.title" linkend="YX"></xref>) projections.
6803 The endcap straws are represented as lines perpendicular to the z-axis in the
6804 φ/Z (<xref endterm="FZ.title" linkend="FZ"></xref>)
6805 projection.
6806 The drift radius is measured with a precision of around 170µm.
6807 </para>
6808
6809 <para>
6810 <emphasis>Transition radiation hits</emphasis>
6811 </para>
6812
6813 <para>
6814 Each straw provides an indication of whether a hit passes a second higher
6815 <emphasis>threshold</emphasis> associated with transition radiation.
6816 This transition radiation is associated with the passage of electrons and
6817 such hits may be used in electron identification. These hits can be viewed
6818 on their own by selecting the high <emphasis>threshold</emphasis> in the
6819 Cuts (<xref endterm="Cuts.title" linkend="Cuts"></xref>).
6820 </para>
6821
6822 <para>
6823 On the Y/X projection (<xref endterm="YX.title" linkend="YX"></xref>) if the
6824 data contains drift signs and if zoomed in far enough the line showing the
6825 TRT data will change to an arrow to represent the drift.
6826 </para>
6827
6828 <para>
6829 <emphasis>Graphical Representation</emphasis>
6830 </para>
6831
6832 <para>
6833 The color of each hit is defined by the <emphasis>color function</emphasis>
6834 which may be either
6835
6836 <itemizedlist>
6837 <listitem>
6838 <para>
6839 <emphasis>constant</emphasis>, in which case the
6840 <emphasis>constant</emphasis> color is used for all hits,
6841 </para>
6842 </listitem>
6843 </itemizedlist>
6844
6845 or it may vary with each hit being given the color of its associated
6846
6847 <itemizedlist>
6848 <listitem>
6849 <para>
6850 <emphasis>simulated track</emphasis>, the colors of
6851 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can be
6852 selected,
6853 </para>
6854 </listitem>
6855 <listitem>
6856 <para>
6857 <emphasis>reconstructed track</emphasis>, the colors of
6858 <emphasis>unconnected</emphasis> and
6859 <emphasis>shared</emphasis> hits can be selected,
6860 </para>
6861 </listitem>
6862 <listitem>
6863 <para>
6864 <emphasis>subdetector</emphasis>
6865 (Endcap-,Barrel-,Barrel+,Endcap+).
6866 </para>
6867 </listitem>
6868 </itemizedlist>
6869 </para>
6870
6871 <para>
6872 More information about colors in Atlantis is given in
6873 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
6874 </para>
6875
6876 </sect2>
6877
6878 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
6879 <sect2 id="STr">
6880 <title id="STr.title">7.1.8 Simulated Tracks (STr)</title>
6881
6882 <para>
6883 Simulated particles may be either charged STr or neutral SNP, and may
6884 be defined by:
6885
6886 <itemizedlist>
6887 <listitem>
6888 <para>
6889 the 3D position of the vertex, from which the particle
6890 originated,
6891 </para>
6892 </listitem>
6893 <listitem>
6894 <para>
6895 the 3D momentum vector at the vertex position,
6896 </para>
6897 </listitem>
6898 <listitem>
6899 <para>
6900 the particle type.
6901 </para>
6902 </listitem>
6903 </itemizedlist>
6904 </para>
6905
6906 <para>
6907 For charged particles, these parameters may be used to derive helix
6908 parameters (perigee parameters), extended by a further value, which gives
6909 the vertex position on the helix.
6910 </para>
6911
6912 <para>
6913 The paths travelled by simulated particles are defined in 3D and can
6914 therefore be seen in all projections. These paths do not reflect multiple
6915 scattering. Furthermore, for charged particles the helix approximation
6916 used is only valid inside the homogeneous solenoidal magnetic field and
6917 assuming negligible energy loss.
6918 </para>
6919
6920 <para>
6921 The color of each simulated particle is defined by the <emphasis>color
6922 function</emphasis> which may be either
6923
6924 <itemizedlist>
6925 <listitem>
6926 <para>
6927 <emphasis>constant</emphasis>, in which case the
6928 <emphasis>constant</emphasis> color is used for all particles,
6929 </para>
6930 </listitem>
6931 </itemizedlist>
6932
6933 or it may vary with each particle being given the color of its
6934
6935 <itemizedlist>
6936 <listitem>
6937 <para>
6938 <emphasis>index</emphasis>: in the range 0 to numSTr-1 or 0
6939 to numSNP-1,
6940 </para>
6941 </listitem>
6942 <listitem>
6943 <para>
6944 <emphasis>particle type</emphasis>:
6945 <itemizedlist>
6946 <listitem>
6947 <para>
6948 cyan - charged hadrons,
6949 </para>
6950 </listitem>
6951 <listitem>
6952 <para>
6953 yellow - electrons,
6954 </para>
6955 </listitem>
6956 <listitem>
6957 <para>
6958 green - muons,
6959 </para>
6960 </listitem>
6961 <listitem>
6962 <para>
6963 magenta - neutral hadrons,
6964 </para>
6965 </listitem>
6966 <listitem>
6967 <para>
6968 red - photons,
6969 </para>
6970 </listitem>
6971 <listitem>
6972 <para>
6973 orange - neutrinos.
6974 </para>
6975 </listitem>
6976 </itemizedlist>
6977 </para>
6978 </listitem>
6979 </itemizedlist>
6980
6981 The radius (<emphasis>radius Tr</emphasis>) and length (<emphasis>Z
6982 Tr</emphasis>) of the cylinder to which the particles are drawn can be
6983 changed.
6984 </para>
6985
6986 <para>
6987 Track images are easier recognised if tracks get a black
6988 <emphasis>frame</emphasis> with a small <emphasis>frame width</emphasis>,
6989 especially in the V-plot if calorimeters are displayed as well.
6990 </para>
6991
6992 <para>
6993 In the V-plot simulated neutral particles SNP are drawn as a
6994 <emphasis>symbol</emphasis> with a given <emphasis>symbol size</emphasis>.
6995 In the other projections simulated neutral particles are drawn as lines.
6996 </para>
6997
6998 <para>
6999 More information about colors in Atlantis is given in
7000 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
7001 </para>
7002
7003 </sect2>
7004
7005 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7006 <sect2 id="InDetSegment">
7007 <title id="InDetSegment.title">7.1.9 Reconstructed InDet Segment Collections (Segment)</title>
7008
7009 <para>
7010 To be filled!
7011 </para>
7012
7013 </sect2>
7014
7015 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7016 <sect2 id="InDetTrack">
7017 <title id="InDetTrack.title">7.1.10 Reconstructed Track Collections (Track)</title>
7018
7019 <para>
7020 Reconstructed tracks are described by helix parameters (perigee parameters).
7021 The reconstructed tracks are defined in 3D and can therefore be seen in all
7022 projections. The helix approximation used is only valid inside the
7023 homogeneous solenoidal magnetic field and assuming negligible energy loss
7024 and no multiple scattering.
7025 </para>
7026
7027 <para>
7028 The color of each reconstructed track is defined by the <emphasis>color
7029 function</emphasis> which may be either
7030
7031 <itemizedlist>
7032 <listitem>
7033 <para>
7034 <emphasis>constant</emphasis>, in which case the
7035 <emphasis>constant</emphasis> color is used for all tracks,
7036 </para>
7037 </listitem>
7038 </itemizedlist>
7039
7040 or it may vary with each track being given the color of its
7041
7042 <itemizedlist>
7043 <listitem>
7044 <para>
7045 <emphasis>index</emphasis>: in the range 0 to numRTr-1,
7046 </para>
7047 </listitem>
7048 <listitem>
7049 <para>
7050 associated <emphasis>simulated track</emphasis>
7051 </para>
7052 </listitem>
7053 <listitem>
7054 <para>
7055 associated <emphasis>E/Gamma reconstucted object</emphasis>
7056 </para>
7057 </listitem>
7058 </itemizedlist>
7059
7060 The radius (<emphasis>radius Tr</emphasis>) and length
7061 (<emphasis>Z Tr</emphasis>) of the cylinder
7062 to which the tracks are drawn can be changed.
7063 </para>
7064
7065 <para>
7066 Track images are easier recognised if tracks get a black
7067 <emphasis>frame</emphasis> with a small <emphasis>frame width</emphasis>,
7068 especially in the V-plot if calorimeters are displayed as well.
7069 </para>
7070
7071 <para>
7072 More information about colors in Atlantis is given in
7073 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
7074 </para>
7075
7076 </sect2>
7077
7078 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7079 <sect2 id="SVx">
7080 <title id="SVx.title">7.1.11 Simulated Vertices (SimVertex)</title>
7081
7082 <para>
7083 Simulated vertices from the Monte Carlo truth. Currently only the start
7084 vertices of simulated particles are available and there should be at
7085 least one simulated particle originating from each simulated vertex.
7086 </para>
7087
7088 <para>
7089 The <emphasis>constant</emphasis> color of the simulated vertices may be
7090 changed.
7091 </para>
7092
7093 <para>
7094 More information about colors in Atlantis is given in
7095 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
7096 </para>
7097
7098 </sect2>
7099
7100 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7101 <sect2 id="RVx">
7102 <title id="RVx.title">7.1.12 Reconstructed Vertices (RecVertex)</title>
7103
7104 <para>
7105 Reconstructed vertices may be formed interactively inside Atlantis from
7106 Lists (<xref endterm="Lists.title" linkend="Lists"></xref>) of
7107 reconstructed tracks.
7108 These reconstructed vertices are best represented by their error
7109 ellipsoids. These representations are currently available only in the
7110 Y/X (<xref endterm="YX.title" linkend="YX"></xref>),
7111 X'/Z (<xref endterm="XZ.title" linkend="XZ"></xref>) and
7112 Y'/Z (<xref endterm="YZ.title" linkend="YZ"></xref>) projections.
7113 The error ellipses shown represent <emphasis>Num Sigma</emphasis> standard
7114 deviations which may be modified.
7115 </para>
7116
7117 <para>
7118 The <emphasis>constant</emphasis> color of these reconstructed vertices may
7119 be changed.
7120 </para>
7121
7122 <para>
7123 More information about colors in Atlantis is given in
7124 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
7125 </para>
7126
7127 </sect2>
7128
7129 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7130 <sect2 id="Fil">
7131 <title id="Fil.title">7.1.13 Hit Filter Setup (Hit Filter)</title>
7132
7133 <para>
7134 In the case of normal simulated events and of the real events to be expected,
7135 it is difficult if not impossible to recognise tracks, etc., due to ghost
7136 hits, delta electrons, hits from the pile up and noise.
7137 </para>
7138
7139 <para>
7140 A filter is available to clean the events. In the case of fairly clean
7141 events, the V-plot may still help out. For the V-plot as for the filter,
7142 the Z-position of the primary vertex of the "triggering event" is required,
7143 so that η can be calculated.
7144 </para>
7145
7146 <para>
7147 <emphasis>Single filter</emphasis>
7148 </para>
7149
7150 <para>
7151 The filter is based on the simple requirement, that a 3D hit passes the
7152 filter if at least N<subscript>H</subscript>
7153 (N<subscript>H</subscript>=<emphasis>NumHits</emphasis>) hits on
7154 different layers lie in the same direction, as seen from the primary vertex.
7155 </para>
7156
7157 <para>
7158 In a φη histogram with cell size
7159 Δφ×Δη,
7160 the hits of a given helix with sufficiently high P<subscript>
7161 t</subscript> lie
7162 in one cell or in its direct neighbours due to rounding or measuring errors.
7163 </para>
7164
7165 <para>
7166 In a first loop over all hits the histogram is filled, however counting
7167 layers and not just hits. This is done using bit patterns. In a second
7168 loop over all hits each hit is accepted or rejected depending on the sum
7169 of different layers in its histogram bin and its neighbours.
7170 </para>
7171
7172 <para>
7173 The second loop can be combined with a clustering algorithm, so that hits
7174 falling into isolated clusters get a <emphasis>group</emphasis> number,
7175 which varies with different clusters. The subsets of S3D hits belonging to
7176 the different <emphasis>groups</emphasis> passing the filter may selected
7177 using the <emphasis>group</emphasis> parameter.
7178 </para>
7179
7180 <para>
7181 The strength and P<subscript>t</subscript> acceptance of the filter is
7182 defined by Δη and Δφ:
7183
7184 <itemizedlist>
7185 <listitem>
7186 <para>
7187 The value of Δη=2×<emphasis>η
7188 Range</emphasis>/<emphasis>Numη</emphasis>
7189 reflects measuring η precision and should be as small as possible
7190 without loosing hits.
7191 </para>
7192 </listitem>
7193 <listitem>
7194 <para>
7195 The value of Δφ=360°/<emphasis>Numφ</emphasis>
7196 defines the
7197 P<subscript>t</subscript> range in which tracks are accepted and the strength
7198 of the filter. A small Δφ (strong filter) rejects much noise
7199 but also low P<subscript>t</subscript> tracks.
7200 </para>
7201 </listitem>
7202 </itemizedlist>
7203
7204 In the same way one can filter tracks in a given P<subscript>t</subscript>
7205 range through a φ'η histogram, where φ' is defined as
7206 φ'=φ-c×s×ρ, where c depends on the magnetic field.
7207 Hits of tracks with P<subscript>t</subscript>=1/s have the same
7208 φ'<subscript>,</subscript> and pass the filter. Depending on
7209 Δφ also hits of tracks with close P<subscript>t</subscript> do
7210 pass. The sign of P<subscript>t</subscript> is equal to the particle charge.
7211 </para>
7212
7213 <para>
7214 <emphasis>Filter loop</emphasis>
7215 </para>
7216
7217 <para>
7218 In order to have a strong filter with also low P<subscript>t</subscript>
7219 tracks passing, the filter is executed N times in a loop where s is varied
7220 between
7221 -1/<emphasis>P<subscript>t<subscript>MIN</subscript></subscript></emphasis>
7222 and
7223 +1/<emphasis>P<subscript>t<subscript>MIN</subscript></subscript></emphasis>
7224 with N=1+2×<emphasis>NumSteps</emphasis>.
7225 Hits, which pass at least one of the single filters, are accepted.
7226 An accepted hit may have different group numbers from different filters.
7227 Different clusters, which contain the same hit, get the same new group
7228 number. Due to measuring errors, some tracks above
7229 <emphasis>P<subscript>t<subscript>MIN</subscript></subscript></emphasis>
7230 may get lost, so that
7231 <emphasis>P<subscript>t<subscript>MIN</subscript></subscript></emphasis>
7232 should be sufficiently low.
7233 </para>
7234
7235 </sect2>
7236
7237 </sect1>
7238
7239 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7240 <sect1 id="Calo">
7241 <title id="Calo.title">7.2 Calorimeters (Calo)</title>
7242
7243 <para>
7244 Control of the attributes of data from the various calorimeters is described
7245 in:
7246
7247 <itemizedlist>
7248 <listitem>
7249 <para>
7250 <emphasis>LAr</emphasis> (<xref endterm="LAr.title" linkend="LAr"></xref>)
7251 : Liquid Argon Calorimeter
7252 </para>
7253 </listitem>
7254 <listitem>
7255 <para>
7256 <emphasis>TILE</emphasis> (<xref endterm="TILE.title" linkend="TILE"></xref>)
7257 : Tile Calorimeter
7258 </para>
7259 </listitem>
7260 <listitem>
7261 <para>
7262 <emphasis>HEC</emphasis> (<xref endterm="HEC.title" linkend="HEC"></xref>)
7263 : Hadronic Endcap Calorimeter
7264 </para>
7265 </listitem>
7266 <listitem>
7267 <para>
7268 <emphasis>FCAL</emphasis> (<xref endterm="FCAL.title" linkend="FCAL"></xref>)
7269 : Forward Calorimeter
7270 </para>
7271 </listitem>
7272 <listitem>
7273 <para>
7274 <emphasis>Cluster</emphasis>
7275 (<xref endterm="Cluster.title" linkend="Cluster"></xref>)
7276 : Clusters
7277 </para>
7278 </listitem>
7279 <listitem>
7280 <para>
7281 <emphasis>SNP</emphasis> (<xref endterm="SNP.title" linkend="SNP"></xref>)
7282 : Simulated Neutral Particles
7283 </para>
7284 </listitem>
7285 <listitem>
7286 <para>
7287 <emphasis>EmTauROI</emphasis>
7288 (<xref endterm="EmTauROI.title" linkend="EmTauROI"></xref>)
7289 : Electromagnetic/Tau Region of Interest
7290 </para>
7291 </listitem>
7292 <listitem>
7293 <para>
7294 <emphasis>JetROI</emphasis>
7295 (<xref endterm="JetROI.title" linkend="JetROI"></xref>)
7296 : Jet Region of Interest
7297 </para>
7298 </listitem>
7299 <listitem>
7300 <para>
7301 <emphasis>LVL1TriggerTower</emphasis>
7302 (<xref endterm="LVL1TriggerTower.title" linkend="LVL1TriggerTower"></xref>)
7303 : Level-1 Calorimeter Trigger Input Data: E/Gamma, tau/had
7304 </para>
7305 </listitem>
7306 <listitem>
7307 <para>
7308 <emphasis>LVL1JetElement</emphasis>
7309 (<xref endterm="LVL1JetElement.title" linkend="LVL1JetElement"></xref>)
7310 : Level-1 Calorimeter Trigger Input Data: jet, ET-Miss/ET-Sum
7311 </para>
7312 </listitem>
7313 </itemizedlist>
7314 </para>
7315
7316 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7317 <sect2 id="LAr">
7318 <title id="LAr.title">7.2.1 Liquid Argon Electromagnetic Calorimeter (LAr)</title>
7319
7320 <para>
7321 The Liquid Argon Electromagnetic Calorimeter consists of a barrel and two
7322 endcaps. The barrel inner and outer radii are 150 and 198 cm, respectively.
7323 The end caps start at 315 and end at 450 cm. Each of the barrel and two
7324 end caps are made up from four samplings with separate readout. The first
7325 sampling (sampling 0) is called the presampler. Each of the four samplings
7326 is split in a large number of separate measuring cells in φ and in η.
7327 The cell geometry is projective in φ and η. The thickness of the
7328 different samplings varies with η in order to make the thickness of
7329 the two middle samplings to be a roughly constant number of radiation lengths.
7330 </para>
7331
7332 <para>
7333 A detailed description of the parameters which are common to all
7334 calorimeters may be found at
7335 <xref endterm="Calorimeter.title" linkend="Calorimeter"></xref>.
7336 </para>
7337
7338 <para>
7339 The granularity Δη×Δφ of the LAr varies over a
7340 large range depending on the sampling and pseudorapidity:
7341
7342 <table frame="topbot" pgwide="0">
7343 <title>Granularity of LAr</title>
7344 <tgroup cols="5">
7345 <colspec colnum="1" colname="colone" colwidth="70" align="left"></colspec>
7346 <colspec colnum="2" colname="coltwo" colwidth="80" align="left"></colspec>
7347 <colspec colnum="3" colname="colthree" colwidth="80" align="left"></colspec>
7348 <colspec colnum="4" colname="colfour" colwidth="80" align="left"></colspec>
7349 <colspec colnum="5" colname="colfive" colwidth="80" align="left"></colspec>
7350 <thead>
7351 <row rowsep="1">
7352 <entry></entry>
7353 <entry>Barrel</entry>
7354 <entry></entry>
7355 <entry>Endcap</entry>
7356 <entry></entry>
7357 </row>
7358 </thead>
7359 <tbody>
7360 <row rowsep="1">
7361 <entry><emphasis>Sampling</emphasis></entry>
7362 <entry>
7363 Δη×Δφ</entry>
7364 <entry>
7365 |η| range</entry>
7366 <entry>
7367 Δη×Δφ</entry>
7368 <entry>
7369 |η| range</entry>
7370 </row>
7371 <row rowsep="1">
7372 <entry>0 (pre)</entry>
7373 <entry>0.025×0.1</entry>
7374 <entry>|η|<1.52</entry>
7375 <entry>0.025×0.1</entry>
7376 <entry>1.5<|η|<1.8</entry>
7377 </row>
7378 <row rowsep="1">
7379 <entry>1</entry>
7380 <entry>0.003×0.1</entry>
7381 <entry>|η|<1.475</entry>
7382 <entry>0.025×0.1</entry>
7383 <entry>1.375<|η|<1.5</entry>
7384 </row>
7385 <row rowsep="1">
7386 <entry></entry>
7387 <entry></entry>
7388 <entry></entry>
7389 <entry>0.003×0.1</entry>
7390 <entry>1.5<|η|<1.8</entry>
7391 </row>
7392 <row rowsep="1">
7393 <entry></entry>
7394 <entry></entry>
7395 <entry></entry>
7396 <entry>0.004×0.1</entry>
7397 <entry>1.8<|η|<2.0</entry>
7398 </row>
7399 <row rowsep="1">
7400 <entry></entry>
7401 <entry></entry>
7402 <entry></entry>
7403 <entry>0.006×0.1</entry>
7404 <entry>2.0<|η|<2.5</entry>
7405 </row>
7406 <row rowsep="1">
7407 <entry></entry>
7408 <entry></entry>
7409 <entry></entry>
7410 <entry>0.1×0.1</entry>
7411 <entry>2.5<|η|<3.2</entry>
7412 </row>
7413 <row rowsep="1">
7414 <entry>2</entry>
7415 <entry>0.025×0.025</entry>
7416 <entry>|η|<1.475</entry>
7417 <entry>0.025×0.025</entry>
7418 <entry>1.375<|η|<2.5</entry>
7419 </row>
7420 <row rowsep="1">
7421 <entry></entry>
7422 <entry></entry>
7423 <entry></entry>
7424 <entry>0.1×0.1</entry>
7425 <entry>2.5<|η|<3.2</entry>
7426 </row>
7427 <row rowsep="1">
7428 <entry>3</entry>
7429 <entry>0.05×0.025</entry>
7430 <entry>|η|<1.475</entry>
7431 <entry>0.05×0.025</entry>
7432 <entry>1.5<|η|<2.5</entry></row>
7433 </tbody>
7434 </tgroup>
7435 </table>
7436 </para>
7437
7438 </sect2>
7439
7440 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7441 <sect2 id="TILE">
7442 <title id="TILE.title">7.2.2 Tile Calorimeter (TILE)</title>
7443
7444 <para>
7445 The TILE calorimeter is a sampling calorimeter using iron as the absorber
7446 and scintillating tiles as the active material. It is used to measure the
7447 hadronic energy of particles moving at small pseudorapidities. The total
7448 η coverage of the TILE is |η|<1.7. The TILE is split
7449 mechanically into three parts: barrel and left and right extended barrels.
7450 The barrel region has a pseudorapidity coverage of |η|<1.0.
7451 The extended barrel region covers the pseudorapidity range
7452 0.8<|η|<1.7. The inner radius of the calorimeter is
7453 2.28 m and the outer radius is 4.25 m. It is longitudinally segmented into
7454 three samplings. The cells are arranged in a pseudo-projective geometry
7455 with a granularity of 0.1×0.1 in Δη×Δφ for
7456 the inner two samplings and 0.2×0.1 in Δη×Δφ
7457 for the outer sampling.
7458 </para>
7459
7460 <para>
7461 A detailed description of the parameters which are common to all
7462 calorimeters may be found at
7463 <xref endterm="Calorimeter.title" linkend="Calorimeter"></xref>.
7464 </para>
7465
7466 </sect2>
7467
7468 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7469 <sect2 id="HEC">
7470 <title id="HEC.title">7.2.3 Hadronic Endcap Calorimeter (HEC)</title>
7471
7472 <para>
7473 The HEC is a liquid argon based hadronic endcap calorimeter. It is used to
7474 measure the hadronic energy of particles in the pseudorapidity range
7475 1.5<|η|<3.2.
7476 Each endcap consists of two independent
7477 wheels which are longitudinally segmented into four samplings. The cell
7478 geometry is fully projective in azimuth and pseudo-projective in
7479 pseudorapidity with a granularity of 0.1×0.1 in
7480 Δη×Δφ in the pseudorapidity range
7481 1.5<|η|<2.5 and 0.2×0.2 in
7482 Δη×Δφ in the pseudorapidity range
7483 2.5<|η|<3.2.
7484 </para>
7485
7486 <para>
7487 A detailed description of the parameters which are common to all
7488 calorimeters may be found at
7489 <xref endterm="Calorimeter.title" linkend="Calorimeter"></xref>.
7490 </para>
7491
7492 </sect2>
7493
7494 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7495 <sect2 id="FCAL">
7496 <title id="FCAL.title">7.2.4 Forward Calorimeter (FCAL)</title>
7497
7498 <para>
7499 The FCAL is a liquid argon based calorimeter providing coverage in the
7500 pseudorapidity range
7501 3.2 < |η| < 4.9.
7502 It is longitudinally
7503 segmented into three samplings. The innermost sampling uses copper as the
7504 absorbing material and is primarily used to measure electromagnetic energy.
7505 The outer two samplings use tungsten as the absorbing material and are used
7506 to measure hadronic energy. The cells have a granularity of
7507 ∼0.2×0.2 in Δη×Δφ.
7508 The FCAL is situated at a distance in Z
7509 of between 4.7 and 6.1 m from the interaction point and at a radial distance
7510 between 7 and 46 cm from the beam axis.
7511 </para>
7512
7513 <para>
7514 A detailed description of the parameters which are common to all
7515 calorimeters may be found at
7516 <xref endterm="Calorimeter.title" linkend="Calorimeter"></xref>.
7517 </para>
7518
7519 </sect2>
7520
7521 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7522 <sect2 id="Cluster">
7523 <title id="Cluster.title">7.2.5 Clusters (Cluster)</title>
7524
7525 <para>
7526 Clusters are formed from energy deposits in the cells of the
7527 liquid argon calorimeter
7528 (<xref endterm="LAr.title" linkend="LAr"></xref>).
7529 Clusters may not currently be viewed, however, cells in the
7530 liquid argon calorimeter may be colored according to their associated cluster.
7531 </para>
7532
7533 <para>
7534 The color of each cluster is defined by the <emphasis>color
7535 function</emphasis> which may be either
7536
7537 <itemizedlist>
7538 <listitem>
7539 <para>
7540 <emphasis>constant</emphasis>, in which case the
7541 <emphasis>constant</emphasis> color is used for all clusters,
7542 </para>
7543 </listitem>
7544 </itemizedlist>
7545
7546 or it may vary with each cluster being given the color of its
7547
7548 <itemizedlist>
7549 <listitem>
7550 <para>
7551 <emphasis>index</emphasis>: in the range 0 to numClusters-1,
7552 </para>
7553 </listitem>
7554 <listitem>
7555 <para>
7556 associated <emphasis>E/Gamma reconstucted object</emphasis>.
7557 </para>
7558 </listitem>
7559 </itemizedlist>
7560 </para>
7561
7562 </sect2>
7563
7564 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7565 <sect2 id="SNP">
7566 <title id="SNP.title">7.2.6 Simulated Neutral Particles in Calorimeter,
7567 Neutral Truth (SNP)</title>
7568
7569 <para>
7570 To be filled!
7571 </para>
7572
7573 </sect2>
7574
7575 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7576 <sect2 id="EmTauROI">
7577 <title id="EmTauROI.title">7.2.7 Regions Of Interest (EmTauROI)</title>
7578
7579 <para>
7580 Regions of interest are Δφ×Δη
7581 regions of solid angle defined by the trigger system.
7582 They may be viewed in the φ/η
7583 (<xref endterm="VP.title" linkend="VP"></xref>) projection and the
7584 Lego Plot (<xref endterm="LegoPlot.title" linkend="LegoPlot"></xref>).
7585 </para>
7586
7587 <para>
7588 The color of each ROI is defined by the <emphasis>color function</emphasis>
7589 which may be either
7590
7591 <itemizedlist>
7592 <listitem>
7593 <para>
7594 <emphasis>constant</emphasis>, in which case the
7595 <emphasis>constant</emphasis> color is used for all ROI's,
7596 </para>
7597 </listitem>
7598 </itemizedlist>
7599
7600 or it may vary with each ROI being given the color of its
7601
7602 <itemizedlist>
7603 <listitem>
7604 <para>
7605 <emphasis>index</emphasis>: in the range 0 to numROI-1.
7606 </para>
7607 </listitem>
7608 </itemizedlist>
7609 </para>
7610
7611 <para>
7612 More information about colors in Atlantis is given in
7613 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
7614 </para>
7615
7616 </sect2>
7617
7618 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7619 <sect2 id="JetROI">
7620 <title id="JetROI.title">7.2.8 Jet Region of Interest (JetROI)</title>
7621
7622 <para>
7623 </para>
7624
7625 </sect2>
7626
7627 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7628 <sect2 id="LVL1TriggerTower">
7629 <title id="LVL1TriggerTower.title">7.2.9 Level-1 Calorimeter Trigger Input Data:
7630 E/Gamma, tau/had (LVL1TriggerTower)</title>
7631
7632 <para>
7633 The data of reduced granularity used inside the Level-1 Calorimeter Trigger
7634 system can be displayed in the
7635 Lego Plot (<xref endterm="LegoPlot.title" linkend="LegoPlot"></xref>).
7636 The switch
7637 "View" allows to select "LVL1TriggerTower" and "LVL1JetElement". The first
7638 set is used inside the E/Gamma and tau/had trigger, the second is the jet and
7639 energysum trigger. The granularity displayed matched the real system.
7640 </para>
7641
7642 <para>
7643 The color of each Trigger data is defined by the <emphasis>color
7644 function</emphasis> which can only be <emphasis>constant</emphasis>, and the
7645 <emphasis>constant</emphasis> color is used for all Trigger data.
7646 </para>
7647
7648 <para>
7649 More information about colors in Atlantis is given in
7650 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
7651 </para>
7652
7653 </sect2>
7654
7655 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7656 <sect2 id="LVL1JetElement">
7657 <title id="LVL1JetElement.title">7.2.10 Level-1 Calorimeter Trigger Input Data:
7658 jet, ET-Miss/ET-Sum (LVL1JetElement)</title>
7659
7660 <para>
7661 To be filled!
7662 </para>
7663
7664 </sect2>
7665
7666 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7667 <sect2 id="Calorimeter">
7668 <title id="Calorimeter.title">7.2.11 Calorimeter Attributes</title>
7669
7670 <para>
7671 <emphasis>Available Projections</emphasis>
7672 </para>
7673
7674 <para>
7675 In Atlantis, the calorimeters
7676 (LAr (<xref endterm="LAr.title" linkend="LAr"></xref>),
7677 TILE (<xref endterm="TILE.title" linkend="TILE"></xref>),
7678 HEC (<xref endterm="HEC.title" linkend="HEC"></xref>),
7679 FCAL (<xref endterm="FCAL.title" linkend="FCAL"></xref>))
7680 can be seen in the following projections:
7681
7682 <table frame="topbot" pgwide="0">
7683 <title>Projections and calorimeters</title>
7684 <tgroup cols="2">
7685 <colspec colnum="1" colname="colone" colwidth="130" align="left"></colspec>
7686 <colspec colnum="2" colname="coltwo" colwidth="300" align="left"></colspec>
7687 <thead>
7688 <row rowsep="1">
7689 <entry>Projection</entry>
7690 <entry>Calorimeter</entry>
7691 </row>
7692 </thead>
7693 <tbody>
7694 <row rowsep="1">
7695 <entry><emphasis>Y/X
7696 (<xref endterm="YX.title" linkend="YX"></xref>)</emphasis>
7697 </entry>
7698 <entry>LAr barrel, TILE barrel and extended barrel</entry>
7699 </row>
7700 <row rowsep="1">
7701 <entry><emphasis>ρ/Z
7702 (<xref endterm="RZ.title" linkend="RZ"></xref>)</emphasis></entry>
7703 <entry>LAr barrel and endcap, TILE, HEC and FCAL</entry>
7704 </row>
7705 <row rowsep="1">
7706 <entry><emphasis>φ/ρ
7707 (<xref endterm="FR.title" linkend="FR"></xref>)</emphasis>
7708 </entry>
7709 <entry>LAr barrel, TILE barrel and extended barrel</entry>
7710 </row>
7711 <row rowsep="1">
7712 <entry><emphasis>φ/Z
7713 (<xref endterm="FZ.title" linkend="FZ"></xref>)</emphasis>
7714 </entry>
7715 <entry>LAr endcap and HEC</entry>
7716 </row>
7717 <row rowsep="1">
7718 <entry><emphasis>φ/η
7719 (<xref endterm="VP.title" linkend="VP"></xref>)</emphasis>
7720 </entry>
7721 <entry>LAr, TILE, HEC, FCAL</entry></row>
7722 </tbody>
7723 </tgroup>
7724 </table>
7725 </para>
7726
7727 <para>
7728 <emphasis>Cells</emphasis>
7729 </para>
7730
7731 <para>
7732 To display only the calorimeter histograms without the calorimeter cells
7733 the cells must be switched off via the <emphasis>Cells</emphasis> parameter.
7734 </para>
7735
7736 <para>
7737 <emphasis>Energy Representation</emphasis>
7738 </para>
7739
7740 <para>
7741 The energy deposited in a calorimeter cell is represented by a polygon
7742 whose area is proportional to the energy in that cell. The process of
7743 generating such a polygon is:
7744
7745 <itemizedlist>
7746 <listitem>
7747 <para>
7748 Calculate the real shape of the cell.
7749 </para>
7750 </listitem>
7751 <listitem>
7752 <para>
7753 Get the centroid of the cell.
7754 </para>
7755 </listitem>
7756 <listitem>
7757 <para>
7758 Scale the cell with respect to the centroid according to the
7759 energy density in the cell.
7760 </para>
7761 </listitem>
7762 </itemizedlist>
7763
7764 The scaling according to energy density (calibration) can be done in
7765 different ways according to the <emphasis>Energy Calibration</emphasis>
7766 parameter:
7767
7768 <itemizedlist>
7769 <listitem>
7770 <para>
7771 Overall calibration - a single calibration for all the
7772 calorimeters.
7773 Allows to compare energy deposition in different calorimeters.
7774 </para>
7775 </listitem>
7776 <listitem>
7777 <para>
7778 By Energy Type calibration - two independent calibrations for
7779 electromagnetic and hadronic energies.
7780 </para>
7781 </listitem>
7782 <listitem>
7783 <para>
7784 By calorimeter calibration - a separate calibration for each
7785 calorimeter.
7786 </para>
7787 </listitem>
7788 </itemizedlist>
7789
7790 Additionally, the user can change the default calibration by switching on
7791 the <emphasis>E/S</emphasis> parameter and specifying for each calorimeter
7792 independently
7793 a different value of energy density than that automatically calculated by
7794 the program. The value of energy density calculated automatically corresponds
7795 to that which would completely fill the geometrical area of the cell with
7796 the highest density.
7797 </para>
7798
7799 <para>
7800 <emphasis>Overlapping Cells</emphasis>
7801 </para>
7802
7803 <para>
7804 In some projections the cells of the same calorimeter may be overlaid on
7805 top of each other. In this case the user has two options in displaying
7806 them according to the <emphasis>Energy Mode</emphasis> parameter:
7807
7808 <itemizedlist>
7809 <listitem>
7810 <para>
7811 Display the energy <emphasis>Sum</emphasis> - the energy
7812 displayed is the sum of that in all the overlapping cells.
7813 </para>
7814 </listitem>
7815 <listitem>
7816 <para>
7817 Display the energy <emphasis>Maximum</emphasis> - the maximum
7818 energy cell of all the overlapping cells is calculated and displayed.
7819 </para>
7820 </listitem>
7821 </itemizedlist>
7822 </para>
7823
7824 <para>
7825 <emphasis>Coloring Schemes</emphasis>
7826 </para>
7827
7828 <para>
7829 The scaled-by-energy-density cells can be colored in different ways
7830 according to the <emphasis>Color Function</emphasis> parameter:
7831
7832 <itemizedlist>
7833 <listitem>
7834 <para>
7835 <emphasis>Constant</emphasis> - a single color is used, which
7836 is given by the <emphasis>Constant</emphasis> parameter.
7837 </para>
7838 </listitem>
7839 <listitem>
7840 <para>
7841 <emphasis>Sub Detector</emphasis> - the cells are colored by
7842 the sub detector in which they are.
7843 </para>
7844 </listitem>
7845 <listitem>
7846 <para>
7847 <emphasis>Cluster</emphasis> - coloring by energy cluster
7848 which comes with data.
7849 If the cell does not belong to any cluster it is colored using the color
7850 defined by <emphasis>Unconnected</emphasis> parameter.
7851 </para>
7852 </listitem>
7853 <listitem>
7854 <para>
7855 <emphasis>Sampling</emphasis> - coloring by the
7856 sampling(layer) in which the cell is.
7857 </para>
7858 </listitem>
7859 <listitem>
7860 <para>
7861 <emphasis>Jet</emphasis> - coloring by the jet to which the
7862 cell is associated.
7863 </para>
7864 </listitem>
7865 </itemizedlist>
7866 </para>
7867
7868 <para>
7869 <emphasis>Cell Frames and Geometry</emphasis>
7870 </para>
7871
7872 <para>
7873 Each cell may have a frame which is drawn on the boundary of the cells
7874 polygon. The color and the width of this frame can be given by setting
7875 the <emphasis>Frame</emphasis> and <emphasis>Frame Width</emphasis>
7876 parameters. Whether the frame is drawn or not is controlled by the state of
7877 the <emphasis>Frame</emphasis> parameter.
7878 </para>
7879
7880 <para>
7881 In some cases it may be useful to see not only the scaled cells but also
7882 the initial (real) cells. This can be obtained by switching on the
7883 <emphasis>Cell Geometry</emphasis> parameter. The background color used to
7884 draw the cell geometry is given by the value of the same parameter.
7885 </para>
7886
7887 <para>
7888 <emphasis>Histograms</emphasis>
7889 </para>
7890
7891 <para>
7892 Another possibility to represent the energy deposition in the calorimeters
7893 is by Histograms. Where appropriate the energy deposition is summed over
7894 layers and depth. A histogram can be obtained by switching on the
7895 <emphasis>Histogram</emphasis> parameter. The histogram can get different
7896 colors according to the value of the <emphasis>Histogram</emphasis> parameter.
7897 They can also have a frame with a color given by the
7898 <emphasis>Histo Frame</emphasis> parameter.
7899 </para>
7900
7901 <para>
7902 The energy is represented as the length of the histogram tower.
7903 The energy to length mapping can be customized by changing the value of
7904 <emphasis>Histo Scale</emphasis> parameter.
7905 </para>
7906
7907 </sect2>
7908
7909 </sect1>
7910
7911 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7912 <sect1 id="MuonDet">
7913 <title id="MuonDet.title">7.3 Muon Detector (MuonDet)</title>
7914
7915 <para>
7916 Control of the attributes of data from the muon system, namely:
7917
7918 <itemizedlist>
7919 <listitem>
7920 <para>
7921 <emphasis>Track</emphasis>
7922 (<xref endterm="MuonTrack.title" linkend="MuonTrack"></xref>)
7923 : Reconstructed Track Collections
7924 </para>
7925 </listitem>
7926 <listitem>
7927 <para>
7928 <emphasis>Segment</emphasis>
7929 (<xref endterm="MuonSegment.title" linkend="MuonSegment"></xref>)
7930 : Segments of Muon Tracks
7931 </para>
7932 </listitem>
7933 <listitem>
7934 <para>
7935 <emphasis>MDT</emphasis> (<xref endterm="MDT.title" linkend="MDT"></xref>)
7936 : Monitored Drift Tubes
7937 </para>
7938 </listitem>
7939 <listitem>
7940 <para>
7941 <emphasis>CSC</emphasis> (<xref endterm="CSC.title" linkend="CSC"></xref>)
7942 : Cathode Strip Chambers
7943 </para>
7944 </listitem>
7945 <listitem>
7946 <para>
7947 <emphasis>RPC</emphasis> (<xref endterm="RPC.title" linkend="RPC"></xref>)
7948 : Resistive Plate Chambers
7949 </para>
7950 </listitem>
7951 <listitem>
7952 <para>
7953 <emphasis>TGC</emphasis> (<xref endterm="TGC.title" linkend="TGC"></xref>)
7954 : Thin Gap Chambers
7955 </para>
7956 </listitem>
7957 <listitem>
7958 <para>
7959 <emphasis>SMTr</emphasis> (<xref endterm="SMTr.title" linkend="SMTr"></xref>)
7960 : Simulated Muon tracks
7961 </para>
7962 </listitem>
7963 <listitem>
7964 <para>
7965 <emphasis>MuonROI</emphasis>
7966 (<xref endterm="MuonROI.title" linkend="MuonROI"></xref>)
7967 : Muon Region of Interest
7968 </para>
7969 </listitem>
7970 </itemizedlist>
7971 </para>
7972
7973 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
7974 <sect2 id="MDT">
7975 <title id="MDT.title">7.3.1 Monitored Drift Tubes (MDT)</title>
7976
7977 <para>
7978 The MDT's provide precision tracking of muons, bending in the toroidal
7979 magnetic field, over a cylindrical region of 11m in radius and 23 m in
7980 half-length. Each MDT is a straw with a diameter of 3 cm and a length in
7981 the range from 70 to 630 cm. The drift radius within each straw is measured
7982 with a precision of ≈80µm. The straws are grouped in modules
7983 which are rectangular in the barrel region and trapezoidal in the endcap
7984 regions. The modules are arranged in three radial stations in the barrel
7985 and three axial stations in the endcaps, and 16 sectors in azimuth.
7986 Within each module the straws are arranged in two groups of multi-layers,
7987 with four straws in each multi-layer in the inner station and three straws
7988 in each multi-layer in the middle and outer stations.
7989 </para>
7990
7991 <para>
7992 <emphasis>Viewing MDT Data</emphasis>
7993 </para>
7994
7995 <para>
7996 Within each sector, straws are aligned perpendicular to the radial line
7997 joining the nominal origin to the center of that sector.
7998 The data from the MDT straws are best viewed in the X'/Z projection
7999 (<xref endterm="XZ.title" linkend="XZ"></xref>) by
8000 selecting the azimuthal angle of its corresponding sector by switching on
8001 the <emphasis>MDT Sector</emphasis> mode and selecting the appropriate sector
8002 number.
8003 Sector number 0 is at 3 o'clock and the sector numbers increase in a
8004 counter-clockwise direction. The selected sector is shown on the top half
8005 of the picture and the geometrically opposite sector is shown on the
8006 bottom half. The MDT hits are normally viewed as circles but they can be
8007 drawn as lines by selecting the appropriate <emphasis>mode</emphasis>.
8008 In the X'/Z projection
8009 (<xref endterm="XZ.title" linkend="XZ"></xref>) the
8010 MDT hits may be compared directly to the tracks measured in the muon system.
8011 </para>
8012
8013 <para>
8014 In the ρ/Z projection
8015 (<xref endterm="RZ.title" linkend="RZ"></xref>) the
8016 MDT data are represented in an approximate way, essentially the
8017 X'/Z projection of all
8018 16 MDT sectors are drawn superimposed, with 8 in the top half of the
8019 picture and 8 in the bottom. In this way one can easily see the data
8020 from all 16 sectors in the same picture. However ρ is only approximated
8021 for these MDT hits which can therefore only be approximately compared to
8022 tracks measured in the muon system which are still drawn with their true
8023 ρ.
8024 </para>
8025
8026 <para>
8027 <emphasis>Graphical Representation</emphasis>
8028 </para>
8029
8030 <para>
8031 The color of each hit is defined by the <emphasis>color function</emphasis>
8032 which may be either
8033
8034 <itemizedlist>
8035 <listitem>
8036 <para>
8037 <emphasis>constant</emphasis>, in which case the
8038 <emphasis>constant</emphasis> color is used for all hits,
8039 </para>
8040 </listitem>
8041 </itemizedlist>
8042
8043 or it may vary with each hit being given the color of its associated
8044
8045 <itemizedlist>
8046 <listitem>
8047 <para>
8048 <emphasis>simulated track</emphasis>, the colors of
8049 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8050 be selected,
8051 </para>
8052 </listitem>
8053 <listitem>
8054 <para>
8055 <emphasis>reconstructed track</emphasis>, the colors of
8056 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8057 be selected,
8058 </para>
8059 </listitem>
8060 <listitem>
8061 <para>
8062 <emphasis>subdetector</emphasis> (Endcap-,Barrel,Endcap+).
8063 </para>
8064 </listitem>
8065 </itemizedlist>
8066 </para>
8067
8068 <para>
8069 More information about colors in Atlantis is given in
8070 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8071 </para>
8072
8073 </sect2>
8074
8075 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8076 <sect2 id="CSC">
8077 <title id="CSC.title">7.3.2 Cathode Strip Chambers (CSC)</title>
8078
8079 <para>
8080 The CSC's are used to provide precision coordinates in the extreme
8081 endcap regions (η>1.9) where MDT's
8082 (<xref endterm="MDT.title" linkend="MDT"></xref>) can't be used.
8083 They are multiwire proportional chambers with cathode strip readout.
8084 The precision coordinaate is obtained by measuring the charge induced
8085 on a segmented cathode by the avalanche produced on an anode wire.
8086 The cathode strips for the precision measurement are oriented orthogonal
8087 to the anode wires. High precision is obtained by charge interpolation
8088 between neighbouring strips on the segmented cathode. The anode wire pitch
8089 is 2.54 mm and the cathode readout pitch is 5.08 mm. The precision
8090 coordinate is measured from a cluster of neighbouring strips with a
8091 resolution of around 60 µm. A second orthogonal coordinate is
8092 measured with less precision from cathode strips oriented parallel to
8093 the anode wires (this coordinaate is not yet available in Atlantis).
8094 The resolution of the precision coordinaate measurement is sensitive to
8095 the Lorentz angle and the chambers are therefore oriented so that high
8096 momentum tracks originating from the interaction enter at normal incidence.
8097 CSC's are arranged in two layers of modules each of which provides
8098 four coordinate measurements.
8099 </para>
8100
8101 <para>
8102 <emphasis>Viewing CSC strips and clusters</emphasis>
8103 </para>
8104
8105 <para>
8106 The precision cathode strips are aligned parallel to the MDT
8107 (<xref endterm="MDT.title" linkend="MDT"></xref>) straws and may
8108 be best viewed together with them in the X'/Z
8109 (<xref endterm="XZ.title" linkend="XZ"></xref>) and ρ/Z
8110 projections (<xref endterm="RZ.title" linkend="RZ"></xref>).
8111 The user may select <emphasis>data</emphasis> from the strips, the clusters
8112 formed from the strips or both. The strips are represented as a histogram of
8113 the measured charge. The clusters are respresented by a line corresponding
8114 to the one standard deviation uncertainty on the position measurement.
8115 </para>
8116
8117 <para>
8118 <emphasis>Graphical Representation</emphasis>
8119 </para>
8120
8121 <para>
8122 The color of each strip is defined by the <emphasis>strip</emphasis> color.
8123 </para>
8124
8125 <para>
8126 The color of each cluster is defined by the
8127 <emphasis>color function</emphasis> which may be either
8128
8129 <itemizedlist>
8130 <listitem>
8131 <para>
8132 <emphasis>constant</emphasis>, in which case the
8133 <emphasis>constant</emphasis> color is used for all hits,
8134 </para>
8135 </listitem>
8136 </itemizedlist>
8137
8138 or it may vary with each hit being given the color of its associated
8139
8140 <itemizedlist>
8141 <listitem>
8142 <para>
8143 <emphasis>simulated track</emphasis>, the colors of
8144 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8145 be selected,
8146 </para>
8147 </listitem>
8148 <listitem>
8149 <para>
8150 <emphasis>reconstructed track</emphasis>, the colors of
8151 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8152 be selected,
8153 </para>
8154 </listitem>
8155 <listitem>
8156 <para>
8157 <emphasis>subdetector</emphasis> (Endcap-,Endcap+).
8158 </para>
8159 </listitem>
8160 </itemizedlist>
8161 </para>
8162
8163 <para>
8164 More information about colors in Atlantis is given in
8165 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8166 </para>
8167
8168 </sect2>
8169
8170 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8171 <sect2 id="RPC">
8172 <title id="RPC.title">7.3.3 Resistive Plate Chambers (RPC)</title>
8173
8174 <para>
8175 The RPC's are mainly used to provide a muon trigger but they also
8176 provide a second coordinate measurement orthogonal to those from the MDT's
8177 (<xref endterm="MDT.title" linkend="MDT"></xref>). The RPC's are
8178 present only in the barrel region, in the endcap regions the same role
8179 is performed by the TGC's (<xref endterm="TGC.title" linkend="TGC"></xref>).
8180 Each RPC module
8181 consists of two rectangular chambers. Each of these chambers are read
8182 out by an orthogonal series of pick-up strips. The η-strips are
8183 parallel to the MDT straws and the φ-strips are orthogonal to the
8184 MDT straws. The strip pitch varies between 3 and 4 cm. Two RPC modules
8185 are arranged on the inner and outer faces of each MDT module in the middle
8186 station and a third is positioned on either the inner or outer face of
8187 each MDT module in the outer station.
8188 </para>
8189
8190 <para>
8191 <emphasis>Viewing RPC strips</emphasis>
8192 </para>
8193
8194 <para>
8195 The η-strips are aligned parallel to the MDT
8196 (<xref endterm="MDT.title" linkend="MDT"></xref>)
8197 straws and may be best viewed together with them in the X'/Z
8198 (<xref endterm="XZ.title" linkend="XZ"></xref>) and ρ/Z
8199 projections (<xref endterm="RZ.title" linkend="RZ"></xref>).
8200 The φ-strips may be best viewed in the Y/X
8201 (<xref endterm="YX.title" linkend="YX"></xref>) and φ/ρ
8202 (<xref endterm="FR.title" linkend="FR"></xref>) projections.
8203 </para>
8204
8205 <para>
8206 <emphasis>R3D: RPC space points</emphasis>
8207 </para>
8208
8209 <para>
8210 From pairs of orthogonal strips belonging to the same RPC chamber a
8211 small 3D box may be formed. These R3D hits, which are currently constructed
8212 internally in Atlantis from the RPC strips, may be viewed in any projection.
8213 The formation of these R3D hits from there corresponding strips is best
8214 visualised in the RPC <emphasis>View</emphasis>'s of the φ/Z projection
8215 (<xref endterm="FZ.title" linkend="FZ"></xref>).
8216 </para>
8217
8218 <para>
8219 <emphasis>Graphical Representation</emphasis>
8220 </para>
8221
8222 <para>
8223 The color of each hit is defined by the <emphasis>color function</emphasis>
8224 which may be either
8225
8226 <itemizedlist>
8227 <listitem>
8228 <para>
8229 <emphasis>constant</emphasis>, in which case the
8230 <emphasis>constant</emphasis> color is used for all hits,
8231 </para>
8232 </listitem>
8233 </itemizedlist>
8234
8235 or it may vary with each hit being given the color of its associated
8236
8237 <itemizedlist>
8238 <listitem>
8239 <para>
8240 <emphasis>simulated track</emphasis>, the colors of
8241 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8242 be selected,
8243 </para>
8244 </listitem>
8245 <listitem>
8246 <para>
8247 <emphasis>reconstructed track</emphasis>, the colors of
8248 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8249 be selected,
8250 </para>
8251 </listitem>
8252 </itemizedlist>
8253
8254 or each hit may be given a color which indicates whether it is part
8255 of an R3D space point
8256
8257 <itemizedlist>
8258 <listitem>
8259 <para>
8260 <emphasis>is3D</emphasis>.
8261 </para>
8262 </listitem>
8263 </itemizedlist>
8264 </para>
8265
8266 <para>
8267 More information about colors in Atlantis is given in
8268 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8269 </para>
8270
8271 </sect2>
8272
8273 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8274 <sect2 id="TGC">
8275 <title id="TGC.title">7.3.4 Thin Gap Chambers (TGC)</title>
8276
8277 <para>
8278 The TGC's are present only in the endcap regions, in the barrel
8279 region the same role is performed by the
8280 RPC's (<xref endterm="RPC.title" linkend="RPC"></xref>).
8281 The TGC's are mainly used to provide a muon trigger but they also
8282 provide a second coordinate measurement orthogonal to those from the
8283 MDT's (<xref endterm="MDT.title" linkend="MDT"></xref>).
8284 TGC modules are constructed from either doublets or triplets of chambers.
8285 There is a doublet module in the inner station which is used only to
8286 provide the second coordinate measurement. There are two doublet modules
8287 and one triplet module in the middle station which are used to provide
8288 both the trigger and second coordinate measurement. Each chamber consists
8289 of orthogonal sets of anode wires and cathode readout strips.
8290 The anode wires are parallel to the MDT straws and the cathode strips are
8291 orthogonal to both the MDT straws and the beam axis. The anode wires are
8292 read out in groups leading to an effective pitch between 0.7 and 3.6 cm.
8293 The cathode strip pitch is ?.? cm.
8294 </para>
8295
8296 <para>
8297 <emphasis>Viewing TGC strips and wires</emphasis>
8298 </para>
8299
8300 <para>
8301 The anode wires are aligned parallel to the MDT
8302 (<xref endterm="MDT.title" linkend="MDT"></xref>)
8303 straws and may be best viewed together with them in the X'/Z
8304 (<xref endterm="XZ.title" linkend="XZ"></xref>) and ρ/Z
8305 (<xref endterm="RZ.title" linkend="RZ"></xref>) projections.
8306 The cathode strips may be best viewed in the φ/Z
8307 (<xref endterm="FZ.title" linkend="FZ"></xref>) projection.
8308 </para>
8309
8310 <para>
8311 <emphasis>T3D: TGC space points</emphasis>
8312 </para>
8313
8314 <para>
8315 From pairs of orthogonal strips and wires belonging to the same TGC
8316 chamber a small 3D box may be formed. These T3D hits, which are currently
8317 constructed internally in Atlantis from the TGC data, may be viewed in
8318 any projection. The formation of these T3D hits from their corresponding
8319 strips and wires is best visualised in the TGC <emphasis>View</emphasis>'s of
8320 the Y/X projection (<xref endterm="YX.title" linkend="YX"></xref>).
8321 </para>
8322
8323 <para>
8324 <emphasis>Graphical Representation</emphasis>
8325 </para>
8326
8327 <para>
8328 The color of each hit is defined by the <emphasis>color function</emphasis>
8329 which may be either
8330
8331 <itemizedlist>
8332 <listitem>
8333 <para>
8334 <emphasis>constant</emphasis>, in which case the
8335 <emphasis>constant</emphasis> color is used for all hits,
8336 </para>
8337 </listitem>
8338 </itemizedlist>
8339
8340 or it may vary with each hit being given the color of its associated
8341
8342 <itemizedlist>
8343 <listitem>
8344 <para>
8345 <emphasis>simulated track</emphasis>, the colors of
8346 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8347 be selected,
8348 </para>
8349 </listitem>
8350 <listitem>
8351 <para>
8352 <emphasis>reconstructed track</emphasis>, the colors of
8353 <emphasis>unconnected</emphasis> and <emphasis>shared</emphasis> hits can
8354 be selected,
8355 </para>
8356 </listitem>
8357 <listitem>
8358 <para>
8359 <emphasis>subdetector</emphasis> (Endcap-,Endcap+),
8360 </para>
8361 </listitem>
8362 </itemizedlist>
8363
8364 or each hit may be given a color which indicates whether it is
8365 part of an T3D space point
8366
8367 <itemizedlist>
8368 <listitem>
8369 <para>
8370 <emphasis>is3D</emphasis>.
8371 </para>
8372 </listitem>
8373 </itemizedlist>
8374 </para>
8375
8376 <para>
8377 More information about colors in Atlantis is given in
8378 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8379 </para>
8380
8381 </sect2>
8382
8383 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8384 <sect2 id="SMTr">
8385 <title id="SMTr.title">7.3.5 Simulated Muon Tracks (SMTr)</title>
8386
8387 <para>
8388 Simulated muon tracks from the Monte Carlo truth information. The paths
8389 of these tracks may pass through material and regions of non-uniform
8390 magnetic fields. They are stored a three dimensional polyline, with a
8391 high density of points in the region of active MDT
8392 (<xref endterm="MDT.title" linkend="MDT"></xref>), RPC
8393 (<xref endterm="RPC.title" linkend="RPC"></xref>) and TGC detectors
8394 (<xref endterm="TGC.title" linkend="TGC"></xref>),
8395 and a lower density of points elsewhere.
8396 </para>
8397
8398 <para>
8399 The color of each simulated track is defined by the
8400 <emphasis>color function</emphasis> which may be either
8401
8402 <itemizedlist>
8403 <listitem>
8404 <para>
8405 <emphasis>constant</emphasis>, in which case the
8406 <emphasis>constant</emphasis> color is used for all tracks,
8407 </para>
8408 </listitem>
8409 </itemizedlist>
8410
8411 or it may vary with each track being given the color of its
8412
8413 <itemizedlist>
8414 <listitem>
8415 <para>
8416 <emphasis>index</emphasis>: in the range 0 to numSMTr-1,
8417 </para>
8418 </listitem>
8419 <listitem>
8420 <para>
8421 <emphasis>identifier</emphasis>.
8422 </para>
8423 </listitem>
8424 </itemizedlist>
8425
8426 Track images are easier recognised if tracks get a black
8427 <emphasis>frame</emphasis> with a small <emphasis>frame width</emphasis>,
8428 especially in the V-plot if calorimeters are displayed as well.
8429 </para>
8430
8431 <para>
8432 More information about colors in Atlantis is given in
8433 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8434 </para>
8435
8436 </sect2>
8437
8438 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8439 <sect2 id="MuonSegment">
8440 <title id="MuonSegment.title">7.3.6 Segments of Muon Tracks (Segment)</title>
8441
8442 <para>
8443 To be filled!
8444 </para>
8445
8446 </sect2>
8447
8448 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8449 <sect2 id="MuonTrack">
8450 <title id="MuonTrack.title">7.3.7 Reconstructed Muon Tracks (Track)</title>
8451
8452 <para>
8453 Muon tracks reconstructed by the MOORE package. The paths of these tracks
8454 may pass through material and regions of non-uniform magnetic fields.
8455 They are stored as a three dimensional polyline, with a high density of
8456 points in the region of active MDT
8457 (<xref endterm="MDT.title" linkend="MDT"></xref>), RPC
8458 (<xref endterm="RPC.title" linkend="RPC"></xref>) and TGC
8459 detectors (<xref endterm="TGC.title" linkend="TGC"></xref>),
8460 and a lower density of points elsewhere.
8461 </para>
8462
8463 <para>
8464 The color of each reconstructed track is defined by the
8465 <emphasis>color function</emphasis> which may be either
8466
8467 <itemizedlist>
8468 <listitem>
8469 <para>
8470 <emphasis>constant</emphasis>, in which case the
8471 <emphasis>constant</emphasis> color is used for all tracks,
8472 </para>
8473 </listitem>
8474 </itemizedlist>
8475
8476 or it may vary with each track being given the color of its
8477
8478 <itemizedlist>
8479 <listitem>
8480 <para>
8481 <emphasis>index</emphasis>: in the range 0 to numMTr-1,
8482 </para>
8483 </listitem>
8484 <listitem>
8485 <para>
8486 <emphasis>identifier</emphasis>.
8487 </para>
8488 </listitem>
8489 </itemizedlist>
8490
8491 Track images are easier recognised if tracks get a black
8492 <emphasis>frame</emphasis> with a small <emphasis>frame width</emphasis>,
8493 especially in the V-plot if calorimeters are displayed as well.
8494 </para>
8495
8496 <para>
8497 More information about colors in Atlantis is given in
8498 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8499 </para>
8500
8501 </sect2>
8502
8503 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8504 <sect2 id="MuonROI">
8505 <title id="MuonROI.title">7.3.8 Muon Region of Interest (MuonROI)</title>
8506
8507 <para>
8508 To be filled!
8509 </para>
8510
8511 </sect2>
8512
8513 </sect1>
8514
8515 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8516 <sect1 id="AOD">
8517 <title id="AOD.title">7.4 Analysis Object Data (AOD)</title>
8518
8519 <para>
8520 Control the attributes of analysis object data, namely
8521
8522 <itemizedlist>
8523 <listitem>
8524 <para>
8525 <emphasis>BJet</emphasis> (<xref endterm="BJet.title" linkend="BJet"></xref>)
8526 : B-tagged Jet
8527 </para>
8528 </listitem>
8529 <listitem>
8530 <para>
8531 <emphasis>Electron</emphasis>
8532 (<xref endterm="Electron.title" linkend="Electron"></xref>)
8533 : Electron
8534 </para>
8535 </listitem>
8536 <listitem>
8537 <para>
8538 <emphasis>Muon</emphasis>
8539 (<xref endterm="Muon.title" linkend="Muon"></xref>)
8540 : Muon
8541 </para>
8542 </listitem>
8543 <listitem>
8544 <para>
8545 <emphasis>Photon</emphasis>
8546 (<xref endterm="Photon.title" linkend="Photon"></xref>)
8547 : Photon
8548 </para>
8549 </listitem>
8550 <listitem>
8551 <para>
8552 <emphasis>TauJet</emphasis>
8553 (<xref endterm="TauJet.title" linkend="TauJet"></xref>)
8554 : Tau
8555 </para>
8556 </listitem>
8557 <listitem>
8558 <para>
8559 <emphasis>Comp.Part.</emphasis>
8560 (<xref endterm="CompPart.title" linkend="CompPart"></xref>)
8561 : Composite Particle
8562 </para>
8563 </listitem>
8564 </itemizedlist>
8565 </para>
8566
8567 <para>
8568 All AOD data is taken from the AOD Collections. It may be viewed in
8569 φ/η projection
8570 (<xref endterm="VP.title" linkend="VP"></xref>) and Lego Plot
8571 (<xref endterm="LegoPlot.title" linkend="LegoPlot"></xref>).
8572
8573 <itemizedlist>
8574 <listitem>
8575 <para>
8576 <emphasis>φ/η projection</emphasis>
8577 : AOD objects are displayed in circles, with size
8578 of the circle scales with Pt or ET. A cross ('x') in the
8579 center of the circle marks the object's position in φ and η.
8580 Detailed information of the objects can be obtained by Pick
8581 (<xref endterm="Pick.title" linkend="Pick"></xref>) on the circles.
8582 </para>
8583 </listitem>
8584 <listitem>
8585 <para>
8586 <emphasis>Lego Plot</emphasis>
8587 : Electron, Muon and Photon are displayed as towers, and the others
8588 are displayed in circles on the φη plane, with the center
8589 of the circle marks the object's position in φ and η.
8590 </para>
8591 </listitem>
8592 </itemizedlist>
8593 </para>
8594
8595 <para>
8596 The color of each AOD data is set based on a same principle. Using BJet as an
8597 example. The color of each b-tagged jet is defined by the
8598 <emphasis>color function</emphasis> which may be either
8599
8600 <itemizedlist>
8601 <listitem>
8602 <para>
8603 <emphasis>constant</emphasis>, in which case the
8604 <emphasis>constant</emphasis> color is used for all b-tagged jets,
8605 </para>
8606 </listitem>
8607 </itemizedlist>
8608
8609 or it may vary with each b-tagged jet being given the color of its
8610
8611 <itemizedlist>
8612 <listitem>
8613 <para>
8614 <emphasis>index</emphasis>: in the range 0 to numBJet-1.
8615 </para>
8616 </listitem>
8617 </itemizedlist>
8618 </para>
8619
8620 <para>
8621 More information about colors in Atlantis is given in
8622 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8623 </para>
8624
8625 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8626 <sect2 id="BJet">
8627 <title id="BJet.title">7.4.1 B-tagged Jet (BJet)</title>
8628
8629 <para>
8630 To be filled!
8631 </para>
8632
8633 </sect2>
8634
8635 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8636 <sect2 id="Electron">
8637 <title id="Electron.title">7.4.2 Electron (Electron)</title>
8638
8639 <para>
8640 To be filled!
8641 </para>
8642
8643 </sect2>
8644
8645 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8646 <sect2 id="Muon">
8647 <title id="Muon.title">7.4.3 Muon (Muon)</title>
8648
8649 <para>
8650 To be filled!
8651 </para>
8652
8653 </sect2>
8654
8655 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8656 <sect2 id="Photon">
8657 <title id="Photon.title">7.4.4 Photon (Photon)</title>
8658
8659 <para>
8660 To be filled!
8661 </para>
8662
8663 </sect2>
8664
8665 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8666
8667 <sect2 id="TauJet">
8668 <title id="TauJet.title">7.4.5 Tau (TauJet)</title>
8669
8670 <para>
8671 To be filled!
8672 </para>
8673
8674 </sect2>
8675
8676 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8677 <sect2 id="CompPart">
8678 <title id="CompPart.title">7.4.6 Composite Particle (CompPart)</title>
8679
8680 <para>
8681 To be filled!
8682 </para>
8683
8684 </sect2>
8685
8686 </sect1>
8687
8688 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8689 <sect1 id="ATLAS">
8690 <title id="ATLAS.title">7.5 Whole Detector (ATLAS)</title>
8691
8692 <para>
8693 Control the attributes of data from the whole detector, namely
8694
8695 <itemizedlist>
8696 <listitem>
8697 <para>
8698 <emphasis>Jet</emphasis> (<xref endterm="Jet.title" linkend="Jet"></xref>)
8699 : Jet Collections
8700 </para>
8701 </listitem>
8702 <listitem>
8703 <para>
8704 <emphasis>ETMis</emphasis>
8705 (<xref endterm="ETMis.title" linkend="ETMis"></xref>)
8706 : Missing ET Collections
8707 </para>
8708 </listitem>
8709 <listitem>
8710 <para>
8711 <emphasis>Detector</emphasis>
8712 (<xref endterm="Det.title" linkend="Det"></xref>)
8713 : Constant Colors of Detector
8714 </para>
8715 </listitem>
8716 </itemizedlist>
8717 </para>
8718
8719 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8720 <sect2 id="Jet">
8721 <title id="Jet.title">7.5.1 Jet Collections (Jet)</title>
8722
8723 <para>
8724 Jets are formed from energy deposits in the cells of the calorimeters.
8725 Jets may currently only be viewed in the φ/η projection
8726 (<xref endterm="VP.title" linkend="VP"></xref>),
8727 where they are represented by a circle centred on the jet direction with an
8728 area proportional to the jet energy.
8729 </para>
8730
8731 <para>
8732 The color of each jet is defined by the <emphasis>color function</emphasis>
8733 which may be either
8734
8735 <itemizedlist>
8736 <listitem>
8737 <para>
8738 <emphasis>constant</emphasis>, in which case the
8739 <emphasis>constant</emphasis> color is used for all jets,
8740 </para>
8741 </listitem>
8742 </itemizedlist>
8743
8744 or it may vary with each jet being given the color of its
8745
8746 <itemizedlist>
8747 <listitem>
8748 <para>
8749 <emphasis>index</emphasis>: in the range 0 to numJet-1.
8750 </para>
8751 </listitem>
8752 </itemizedlist>
8753 </para>
8754
8755 <para>
8756 More information about colors in Atlantis is given in
8757 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>.
8758 </para>
8759
8760 </sect2>
8761
8762 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8763 <sect2 id="ETMis">
8764 <title id="ETMis.title">7.5.2 Missing ET Collections (ETMis)</title>
8765
8766 <para>
8767 To be filled!
8768 </para>
8769
8770 </sect2>
8771
8772 </sect1>
8773
8774 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8775
8776 <sect1 id="Det">
8777 <title id="Det.title">7.6 Detector Colors (Det)</title>
8778
8779 <para>
8780 This section lists detector elements and their color attributes.
8781 Toggle switches are used to display/hide elements and choice menus are used
8782 to select colors. The options are:
8783
8784 <itemizedlist>
8785 <listitem>
8786 <para>
8787 Pixel color
8788 </para>
8789 </listitem>
8790 <listitem>
8791 <para>
8792 SCT color
8793 </para>
8794 </listitem>
8795 <listitem>
8796 <para>
8797 TRT color
8798 </para>
8799 </listitem>
8800 <listitem>
8801 <para>
8802 Solenoid color
8803 </para>
8804 </listitem>
8805 <listitem>
8806 <para>
8807 LAr calorimeter color
8808 </para>
8809 </listitem>
8810 <listitem>
8811 <para>
8812 Tile calorimeter color
8813 </para>
8814 </listitem>
8815 <listitem>
8816 <para>
8817 RPC color
8818 </para>
8819 </listitem>
8820 <listitem>
8821 <para>
8822 TGC color
8823 </para>
8824 </listitem>
8825 <listitem>
8826 <para>
8827 MDT color
8828 </para>
8829 </listitem>
8830 <listitem>
8831 <para>
8832 CSC color
8833 </para>
8834 </listitem>
8835 <listitem>
8836 <para>
8837 Background color
8838 </para>
8839 </listitem>
8840 <listitem>
8841 <para>
8842 InDet geometry detail
8843 </para>
8844 </listitem>
8845 <listitem>
8846 <para>
8847 Calorimetry cell structure
8848 </para>
8849 </listitem>
8850 <listitem>
8851 <para>
8852 Show detectors
8853 </para>
8854 </listitem>
8855 <listitem>
8856 <para>
8857 Show detectors outline
8858 </para>
8859 </listitem>
8860 </itemizedlist>
8861 </para>
8862
8863 <para>
8864 More information about detector colors and element display are given in
8865 <xref endterm="ColorUse.title" linkend="ColorUse"></xref> and
8866 <xref endterm="Attributes.title" linkend="Attributes"></xref>.
8867 </para>
8868
8869 </sect1>
8870
8871 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8872 <sect1 id="GenInfo">
8873 <title id="GenInfo.title">7.7 General Information</title>
8874
8875 <para>
8876 This section contains general information about system wide parameters:
8877
8878 <itemizedlist>
8879 <listitem>
8880 <para>
8881 <xref endterm="ColorUse.title" linkend="ColorUse"></xref>
8882 </para>
8883 </listitem>
8884 <listitem>
8885 <para>
8886 <xref endterm="Attributes.title" linkend="Attributes"></xref>
8887 </para>
8888 </listitem>
8889 </itemizedlist>
8890 </para>
8891
8892 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8893 <sect2 id="ColorUse">
8894 <title id="ColorUse.title">7.7.1 About the Use of Colors</title>
8895
8896 <para>
8897 The Atlantis projections (except the φ/η projection)
8898 are chosen in such a way that detector volumes do not overlap. Therefore,
8899 one can replace transparent wire frame images by filled areas surrounded
8900 by frames, which are easier to perceive intuitively. The fill colors of
8901 the various detectors and of the background may be modified.
8902 </para>
8903
8904 <para>
8905 <emphasis>N.B.:</emphasis>
8906 </para>
8907
8908 <para>
8909 Small points, lines or cells are better distinguished from background with
8910 high intensity contrast. The intensity I of colors can be very roughly
8911 estimated, by:
8912 </para>
8913
8914 <para>
8915 I = 4×I<subscript>green</subscript> +
8916 2×I<subscript>red</subscript>
8917 + b×I<subscript>blue</subscript> with b between 0.5 and 1.
8918 </para>
8919
8920 <para>
8921 <emphasis>N.B.:</emphasis>
8922 </para>
8923
8924 <para>
8925 Blue or magenta backgrounds change colors of very small objects:
8926 yellow to white, green to cyan and red to magenta.
8927 </para>
8928
8929 <para>
8930 When <emphasis>printing</emphasis> on normal quality color printers it is
8931 advisable to
8932 avoid muted colors for areas onto which small objects are drawn. Therefore
8933 printed files have their own color set, which takes this into account.
8934 Print colors may therefore be different from display colors.
8935 </para>
8936
8937 <para>
8938 <emphasis>N.B.:</emphasis>
8939 </para>
8940
8941 <para>
8942 The background color of the φ/η projection
8943 (<xref endterm="VP.title" linkend="VP"></xref>)
8944 is controlled by the projection and may be modified there.
8945 </para>
8946
8947 </sect2>
8948
8949 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
8950 <sect2 id="Attributes">
8951 <title id="Attributes.title">7.7.2 Graphics Attributes of Hits</title>
8952
8953 <para>
8954 In general point-like hit data are displayed as <emphasis>symbols</emphasis>
8955 which may be chosen from
8956
8957 <itemizedlist>
8958 <listitem>
8959 <para>
8960 <emphasis>filled square</emphasis>
8961 </para>
8962 </listitem>
8963 <listitem>
8964 <para>
8965 <emphasis>horizontal line</emphasis>
8966 </para>
8967 </listitem>
8968 <listitem>
8969 <para>
8970 <emphasis>vertical line</emphasis>
8971 </para>
8972 </listitem>
8973 <listitem>
8974 <para>
8975 <emphasis>plus</emphasis>
8976 </para>
8977 </listitem>
8978 </itemizedlist>
8979
8980 and drawn with a size determined by the <emphasis>symbol size</emphasis>.
8981 </para>
8982
8983 <para>
8984 Tracks and non-point-like hit data are displayed as lines with a selectable
8985 <emphasis>line width</emphasis>. For non-point-like hit data (e.g. TRT) under
8986 certain
8987 zooming conditions it is possible for the two ends of the line representing
8988 each hit to be separated by very small distances, i.e., less than one pixel
8989 on the screen. In such cases hit data may not be visible if drawn as lines.
8990 To avoid this situation a <emphasis>MinSize</emphasis> may be specified such
8991 that if all
8992 the lines from a given detector have a length in screen coordinates (pixels)
8993 smaller than <emphasis>MinSize</emphasis> then the data from this detector
8994 are drawn as
8995 symbols (squares by default) with a size <emphasis>MinSize</emphasis>.
8996 Furthermore the user
8997 may force non-point-like hit data to be drawn as symbol with size
8998 <emphasis>MinSize</emphasis> using <emphasis>Force Symbols</emphasis>.
8999 </para>
9000
9001 <para>
9002 For noise hits, where noise hits are those which are not connected to
9003 simulated or reconstructed tracks (and in the case of S3D hits are ungrouped
9004 by the filter), either a special <emphasis>noise</emphasis> symbol with a
9005 special <emphasis>noise size</emphasis> or a special
9006 <emphasis>noise width</emphasis> can be selected.
9007 By default unconnected or ungrouped hits are white and not easy to
9008 distinguish from yellow hits. It is easier to distinguish noise and
9009 yellow hits when a different symbol for noise hits is set.
9010 </para>
9011
9012 <para>
9013 To better distinguish hits from tracks of the same color or from a colored
9014 background, they may get a <emphasis>frame</emphasis>, where the color can be
9015 selected, with a <emphasis>frame width</emphasis> which can be modified.
9016 </para>
9017
9018 </sect2>
9019
9020 </sect1>
9021
9022 </chapter>
9023
9024 <!--=======================================================================-->
9025 <chapter id="Athena">
9026 <title id="Athena.title">Interactive Athena</title>
9027
9028 <para>
9029 <ulink url="http://atlas.web.cern.ch/Atlas/GROUPS/SOFTWARE/OO/architecture/">
9030 Athena</ulink> can be accessed interactively from Atlantis via
9031 the Interactive Athena dialog window. This window is popped up by selecting
9032 the <emphasis>File→Interactive Athena</emphasis> menu option of the
9033 Control Window.
9034 </para>
9035
9036 <para>
9037 By means of this dialog the user is able to steer the Athena framework
9038 directly from the Atlantis display. The other necessary component is the
9039 Python script <emphasis>InteractiveServer.py</emphasis>, that is started on
9040 the Athena interactive prompt.
9041 </para>
9042
9043 <para>
9044 It is possible to perform various actions from the Atlantis dialog window as
9045 if the commands were typed on the Athena interactive prompt directly, e.g.
9046 changing/querying the values of the job options, executing the methods of
9047 Athena algtools/algorithms, directing Athena to process the next event by
9048 calling <emphasis>theApp.nextEvent()</emphasis> and eventually getting the
9049 XML event data.
9050 </para>
9051
9052 <para>
9053 <emphasis>InteractiveServer.py</emphasis> is a Python script that is used to
9054 interface the
9055 Atlantis Interactive Athena dialog and the Athena interactive Python prompt
9056 (when Athena is started by <emphasis>athena -i [job_option_file]</emphasis>).
9057 Once the
9058 script is started, the created server receives requests from the Atlantis
9059 user, processes these requests and sends the results back to Atlantis.
9060 </para>
9061
9062 <para>
9063 The CVS location of the script is
9064 <emphasis>offline/graphics/AtlantisJava/share/InteractiveServer.py</emphasis>.
9065 In the Athena environment it can be obtained by
9066 <emphasis>get_files InteractiveServer.py</emphasis> as well.
9067 </para>
9068
9069 <para>
9070 Establishing the communication between Atlantis and Athena is described in
9071 <xref endterm="AthenaSetup.title" linkend="AthenaSetup"></xref>.
9072 </para>
9073
9074 <para>
9075 Using the Athena vertex fitter from Atlantis is described in
9076 <xref endterm="AthenaVF.title" linkend="AthenaVF"></xref>.
9077 </para>
9078
9079 <para>
9080 <emphasis>N.B.</emphasis>: If the user opts for some reason not to use the
9081 Athena algtools
9082 and still be able to start <emphasis>InteractiveServer.py</emphasis>, it's
9083 possible to
9084 create the server without initialising the algtools. Before starting the
9085 script on the Python prompt by <emphasis>execfile
9086 ("InteractiveServer.py")</emphasis> it
9087 is necessary to make the following assignment:
9088 </para>
9089
9090 <para>
9091 <emphasis>argumentInteractiveServer = "NO_ALGTOOLS"</emphasis>
9092 </para>
9093
9094 <para>
9095 It is not then possible to obtain the XML event
9096 data (JiveXML algtool) or run the vertexing in Athena.
9097 </para>
9098
9099 <para>
9100 <emphasis>N.B.</emphasis>: If due to network security restrictions the
9101 connection between
9102 Atlantis and the <emphasis>InteractiveServer.py</emphasis> on the Athena
9103 prompt can't be
9104 established directly, an SSH tunnel can be created throught which both
9105 parties should be able to connect.
9106 </para>
9107
9108 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
9109 <sect1 id="AthenaSetup">
9110 <title id="AthenaSetup.title">8.1 Setting up Atlantis ↔
9111 Interactive Athena communication</title>
9112
9113 <para>
9114 <itemizedlist>
9115 <listitem>
9116 <para>
9117 Atlantis has been started (most likely on the local machine)
9118 </para>
9119 </listitem>
9120 <listitem>
9121 <para>
9122 Athena environment is set up (most likely run remotely)
9123 </para>
9124 </listitem>
9125 <listitem>
9126 <para>
9127 Getting <emphasis>InteractiveServer.py</emphasis> to the run
9128 directory: <emphasis>get_files InteractiveServer.py</emphasis>
9129 (or copy from CVS)
9130 </para>
9131 </listitem>
9132 <listitem>
9133 <para>
9134 Starting Athena in the interactive mode:
9135 <emphasis>athena -i myTopOptions.py</emphasis>
9136 </para>
9137 </listitem>
9138 <listitem>
9139 <para>
9140 Type command: <emphasis>theApp.initialize()</emphasis>
9141 (it could also go at the bottom of the top options file)
9142 </para>
9143 </listitem>
9144 <listitem>
9145 <para>
9146 Start server by <emphasis>execfile
9147 ("InteractiveServer.py")</emphasis> after which the
9148 interactive prompt is taken over by the script.
9149 </para>
9150 </listitem>
9151 <listitem>
9152 <para>
9153 Provided that everything went well (no error messages were
9154 printed), algtools were initialised and the server was bound to the port,
9155 copy and paste this information into the Atlantis dialog:
9156 <itemizedlist>
9157 <listitem>
9158 <para>
9159 <emphasis>server name</emphasis>
9160 </para>
9161 </listitem>
9162 <listitem>
9163 <para>
9164 <emphasis>server port</emphasis>
9165 </para>
9166 </listitem>
9167 <listitem>
9168 <para>
9169 <emphasis>key</emphasis>
9170 </para>
9171 </listitem>
9172 </itemizedlist>
9173 Key is a randomly generated string and is a protection against user's Athena
9174 session being driven by another user who happens to put into his Atlantis
9175 dialog window the name of the remote machine and the port that someone else
9176 is using.
9177 </para>
9178 </listitem>
9179 <listitem>
9180 <para>
9181 Provided that there are no network security issues disabling
9182 direct communication, the user can now type the Athena commands in Atlantis,
9183 steer Athena and demand the actual XML event data or run the Athena vertex
9184 fitter from Atlantis.
9185 </para>
9186 </listitem>
9187 <listitem>
9188 <para>
9189 <emphasis>theApp.nextEvent()</emphasis> should be the first
9190 command to execute in order to be able to obtain some XML event data.
9191 </para>
9192 </listitem>
9193 <listitem>
9194 <para>
9195 Pressing Ctrl-c shuts down
9196 <emphasis>InteractiveServer.py</emphasis> and the
9197 interactive prompt is given back to the user.
9198 </para>
9199 </listitem>
9200 <listitem>
9201 <para>
9202 <emphasis>myTopOptions.py</emphasis>
9203 (bottom of the file)
9204 </para>
9205 <para>
9206 doJiveXML = True
9207 </para>
9208 <para>
9209 include ("RecExCommon/RecExCommon_topOptions.py")
9210 </para>
9211 <para>
9212 include ("PyAnalysisCore/InitPyAnalysisCore.py")
9213 </para>
9214 <para>
9215 include ("InteractiveTools/jobOptionsBase.py")
9216 </para>
9217 <para>
9218 ToolSvc.EventData2XML.DataTypes += ["Vertex"]
9219 </para>
9220 <para>
9221 ToolSvc.EventData2XML.xKalmanTracks = "Tracks"
9222 </para>
9223 <para>
9224 # vertexing algorithms
9225 </para>
9226 <para>
9227 # ToolSvc.VxWrapperTool.VxToolName = "Trk::FastVertexFitter"
9228 </para>
9229 <para>
9230 ToolSvc.VxWrapperTool.VxToolName = "Trk::FullVertexFitter"
9231 </para>
9232 </listitem>
9233 </itemizedlist>
9234 </para>
9235
9236 </sect1>
9237
9238 <!-- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
9239 <sect1 id="AthenaVF">
9240 <title id="AthenaVF.title">8.2 Calling the Athena vertex fitter from
9241 Atlantis</title>
9242
9243 <para>
9244 <itemizedlist>
9245 <listitem>
9246 <para>
9247 It is necessary to carry out the procedure described in
9248 <xref endterm="AthenaSetup.title" linkend="AthenaSetup"></xref>
9249 The actual vertexing algorithm type is chosen in myTopOptions.py.
9250 The picture below shows the vertexing process.
9251 </para>
9252 </listitem>
9253 <listitem>
9254 <para>
9255 Tracks whose IDs are to be sent to the Athena vertex fitter
9256 have to be selected with the "rubberband" Atlantis interaction.
9257 After doing so, a pop-up menu appears on the canvas where the user selects
9258 <emphasis>New List</emphasis>, into which these tracks are put.
9259 </para>
9260 </listitem>
9261 <listitem>
9262 <para>
9263 The most recent list is now highlighted in the Atlantis List
9264 manager dialog window.
9265 </para>
9266 <para>
9267 If only <emphasis>Track</emphasis> tracks were put into the list (and no
9268 other objects such as hits or tracks of other types), an item
9269 <emphasis>Vertex in Athena</emphasis> appears in the context menu after
9270 right-clicking on the list item in the List manager.
9271 </para>
9272 <para>
9273 Only with <emphasis>Track</emphasis> tracks one can call the Athena vertex
9274 fitter. The Atlantis internal vertex fitter can be called upon
9275 <emphasis>Track</emphasis> tracks and <emphasis>iPatTrack</emphasis> tracks.
9276 </para>
9277 </listitem>
9278 <listitem>
9279 <para>
9280 Given that proper information was filled in the Atlantis
9281 Interactive Athena dialog and the connection to
9282 <emphasis>InteractiveServer.py</emphasis> could be established, the
9283 <emphasis>Track</emphasis> tracks IDs were sent to Athena and the fitter
9284 called. This can be observed in the window where Athena is started from.
9285 </para>
9286 <para>
9287 In order to find out whether or not the listed tracks come from a common
9288 vertex, the user has to hit the <emphasis>Get Event</emphasis> button and
9289 search for a new item of the <emphasis>RecVertex</emphasis> datatype (see
9290 event summary in the output window in the bottom part of the GUI or
9291 <emphasis>File → Event Properties</emphasis>) once updated event data
9292 arrive. If the vertex was found and the <emphasis>RecVertex</emphasis>
9293 datatype is switched on (Data tabpane, InDet) a newly calculated vertex will
9294 be displayed for instance in the XY projection as an ellipse. The tracks
9295 which form this vertex will be shortened to the centre of that ellipse
9296 (in XY).
9297 </para>
9298 </listitem>
9299 <listitem>
9300 <para>
9301 The picture below demonstrates the aforementioned procedure.
9302 </para>
9303 <para>
9304 <figure float="0">
9305 <title>Vertexing process</title>
9306 <mediaobject id="vertexingProcess">
9307 <imageobject>
9308 <imagedata fileref="vertexing.png" format="png" scale="100">
9309 </imagedata>
9310 </imageobject>
9311 <caption><para>
9312 </para></caption>
9313 </mediaobject>
9314 </figure>
9315 </para>
9316 </listitem>
9317 </itemizedlist>
9318 </para>
9319
9320 </sect1>
9321
9322 </chapter>
9323
9324 <!--=======================================================================-->
9325 <glossary id="atlantisglossary">
9326 <title>Glossary</title>
9327
9328 <glossentry>
9329 <glossterm>Atlantis Canvas</glossterm>
9330 <glossdef>
9331 <para>
9332 The name of the Display Window or Canvas. See <emphasis>Canvas</emphasis>.
9333 </para>
9334 </glossdef>
9335 </glossentry>
9336
9337 <glossentry>
9338 <glossterm>Atlantis GUI</glossterm>
9339 <glossdef>
9340 <para>
9341 The name of the Control Window. See <emphasis>Control Window</emphasis>.
9342 </para>
9343 </glossdef>
9344 </glossentry>
9345
9346 <glossentry>
9347 <glossterm>Canvas</glossterm>
9348 <glossdef>
9349 <para>
9350 Or Display Window. The permanent window used by Atlantis to show pictures.
9351 The Canvas contains one or more <emphasis>canvas pads</emphasis> in which
9352 the pictures are shown.
9353 </para>
9354 <para>
9355 (See <xref linkend="Canvas"></xref>)
9356 </para>
9357 </glossdef>
9358 </glossentry>
9359
9360 <glossentry>
9361 <glossterm>Canvas Control (Control Window)</glossterm>
9362 <glossdef>
9363 <para>
9364 For selection and control of <emphasis>canvas pads</emphasis>.
9365 </para>
9366 <para>
9367 (See <xref linkend="WindowControl"></xref>)
9368 </para>
9369 </glossdef>
9370 </glossentry>
9371
9372 <glossentry>
9373 <glossterm>Canvas Pad</glossterm>
9374 <glossdef>
9375 <para>
9376 A part of the <emphasis>Canvas</emphasis> that shows a picture of a specific
9377 event with specific cuts, transformations and interactions applied.
9378 </para>
9379 <para>
9380 (See <xref linkend="Window"></xref>)
9381 </para>
9382 </glossdef>
9383 </glossentry>
9384
9385 <glossentry>
9386 <glossterm>Central Point</glossterm>
9387 <glossdef>
9388 <para>
9389 Used by the ZMR interaction for zooming and rotation in a canvas window.
9390 </para>
9391 <para>
9392 (See <xref linkend="CentralPoint"></xref>)
9393 </para>
9394 </glossdef>
9395 </glossentry>
9396
9397 <glossentry>
9398 <glossterm>Control Window</glossterm>
9399 <glossdef>
9400 <para>
9401 Permanent window named "Atlantis GUI".
9402 The window used by Atlantis for control and management.
9403 It contains <emphasis>Menu</emphasis>, <emphasis>Canvas Control</emphasis>,
9404 <emphasis>Interaction Control</emphasis>,
9405 <emphasis>Parameter Control</emphasis> and
9406 <emphasis>Output Display</emphasis> parts.
9407 </para>
9408 <para>
9409 (See <xref linkend="ControlWindow"></xref>)
9410 </para>
9411 </glossdef>
9412 </glossentry>
9413
9414 <glossentry>
9415 <glossterm>Display Window</glossterm>
9416 <glossdef>
9417 <para>
9418 Or Canvas. See <emphasis>Canvas</emphasis>.
9419 </para>
9420 </glossdef>
9421 </glossentry>
9422
9423 <glossentry>
9424 <glossterm>Interaction Control (Control Window)</glossterm>
9425 <glossdef>
9426 <para>
9427 To select and control <emphasis>interactions</emphasis>.
9428 </para>
9429 <para>
9430 (See <xref linkend="InteractionControl"></xref>)
9431 </para>
9432 </glossdef>
9433 </glossentry>
9434
9435 <glossentry>
9436 <glossterm>Interactions</glossterm>
9437 <glossdef>
9438 <para>
9439 The real work! Zoom, move, rotate, select, special transformations, etc.
9440 </para>
9441 <para>
9442 (See <xref linkend="Interactions"></xref>)
9443 </para>
9444 </glossdef>
9445 </glossentry>
9446
9447 <glossentry>
9448 <glossterm>Menu (Control Window)</glossterm>
9449 <glossdef>
9450 <para>
9451 To select and print events, to set personal preferences, to get help
9452 and to reset Atlantis.
9453 </para>
9454 <para>
9455 (See <xref linkend="Menu"></xref>)
9456 </para>
9457 </glossdef>
9458 </glossentry>
9459
9460 <glossentry>
9461 <glossterm>Modifier Key</glossterm>
9462 <glossdef>
9463 <para>
9464 Combinations of a keyboard key and a mouse key, that are used to
9465 generate pop-up menus or to perform interactions.
9466 </para>
9467 <para>
9468 (See <xref linkend="MouseModifierKeys"></xref>)
9469 </para>
9470 </glossdef>
9471 </glossentry>
9472
9473 <glossentry>
9474 <glossterm>Output Display (Control Window)</glossterm>
9475 <glossdef>
9476 <para>
9477 Output area to display information about various topics, e.g. track
9478 information, pick information, cuts summary.
9479 </para>
9480 <para>
9481 (See <xref linkend="OutputDisplay"></xref>)
9482 </para>
9483 </glossdef>
9484 </glossentry>
9485
9486 <glossentry>
9487 <glossterm>Pad, Canvas</glossterm>
9488 <glossdef>
9489 <para>
9490 See <emphasis>Canvas Pad</emphasis>.
9491 </para>
9492 </glossdef>
9493 </glossentry>
9494
9495 <glossentry>
9496 <glossterm>Parameter Control (Control Window)</glossterm>
9497 <glossdef>
9498 <para>
9499 To view and modify Atlantis parameters.
9500 </para>
9501 <para>
9502 (See <xref linkend="ParametersControl"></xref>)
9503 </para>
9504 </glossdef>
9505 </glossentry>
9506
9507 <glossentry>
9508 <glossterm>Window, Control</glossterm>
9509 <glossdef>
9510 <para>
9511 See <emphasis>Control Window</emphasis>.
9512 </para>
9513 </glossdef>
9514 </glossentry>
9515
9516 <glossentry>
9517 <glossterm>Window, Display</glossterm>
9518 <glossdef>
9519 <para>
9520 Or Canvas. See <emphasis>Canvas</emphasis>.
9521 </para>
9522 </glossdef>
9523 </glossentry>
9524
9525 <glossentry>
9526 <glossterm>ZMR</glossterm>
9527 <glossdef>
9528 <para>
9529 Interaction to zoom, move and/or rotate a picture in a
9530 <emphasis>canvas pad</emphasis>.
9531 </para>
9532 <para>
9533 (See <xref linkend="ZMR"></xref>)
9534 </para>
9535 </glossdef>
9536 </glossentry>
9537
9538 </glossary>
9539
9540 <!--=======================================================================-->
9541 </book>
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