BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG1173
(154 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34541025|ref|NP_905504.1| hypothetical protein PG1335 [P... 281 6e-75
gi|116749739|ref|YP_846426.1| protein of unknown function D... 110 2e-23
gi|150021209|ref|YP_001306563.1| protein of unknown functio... 77 4e-13
gi|89210958|ref|ZP_01189339.1| Protein of unknown function ... 76 5e-13
gi|154249415|ref|YP_001410240.1| protein of unknown functio... 76 8e-13
gi|15643628|ref|NP_228674.1| hypothetical protein TM0865 [T... 74 2e-12
gi|148269207|ref|YP_001243667.1| protein of unknown functio... 73 5e-12
gi|86740057|ref|YP_480457.1| protein of unknown function DU... 69 7e-11
gi|156868300|gb|EDO61672.1| hypothetical protein CLOLEP_020... 67 4e-10
gi|119960574|ref|YP_947933.1| putative integral membrane pr... 64 2e-09
gi|115380091|ref|ZP_01467130.1| conserved hypothetical prot... 64 3e-09
gi|154484008|ref|ZP_02026456.1| hypothetical protein EUBVEN... 62 1e-08
gi|126698457|ref|YP_001087354.1| hypothetical protein CD088... 61 2e-08
gi|153011583|ref|YP_001372797.1| protein of unknown functio... 61 2e-08
gi|153853512|ref|ZP_01994892.1| hypothetical protein DORLON... 60 3e-08
gi|156863599|gb|EDO57030.1| hypothetical protein CLOL250_02... 60 4e-08
gi|145595537|ref|YP_001159834.1| protein of unknown functio... 59 7e-08
gi|72162625|ref|YP_290282.1| putative integral membrane pro... 59 9e-08
gi|111221553|ref|YP_712347.1| putative integral membrane pr... 59 1e-07
gi|51245722|ref|YP_065606.1| hypothetical protein DP1870 [D... 59 1e-07
gi|114706194|ref|ZP_01439097.1| hypothetical protein FP2506... 59 1e-07
gi|21225503|ref|NP_631282.1| integral membrane protein [Str... 58 1e-07
gi|111024168|ref|YP_707140.1| hypothetical protein RHA1_ro0... 57 3e-07
gi|154502546|ref|ZP_02039606.1| hypothetical protein RUMGNA... 57 3e-07
gi|119882271|ref|ZP_01648543.1| protein of unknown function... 57 4e-07
gi|108757890|ref|YP_632163.1| NfeD family protein [Myxococc... 56 6e-07
gi|15678720|ref|NP_275836.1| hypothetical protein MTH693 [M... 56 6e-07
gi|54025442|ref|YP_119684.1| hypothetical protein nfa34720 ... 56 8e-07
gi|147919405|ref|YP_686856.1| hypothetical protein RCIX2447... 55 1e-06
gi|15894338|ref|NP_347687.1| Uncharacterized conserved prot... 54 3e-06
gi|134100317|ref|YP_001105978.1| membrane protein implicate... 54 3e-06
gi|116670737|ref|YP_831670.1| protein of unknown function D... 54 3e-06
gi|118617157|ref|YP_905489.1| hypothetical protein MUL_1496... 54 4e-06
gi|154508905|ref|ZP_02044547.1| hypothetical protein ACTODO... 53 4e-06
gi|28210404|ref|NP_781348.1| hypothetical protein CTC00680 ... 53 4e-06
gi|149279943|ref|ZP_01886069.1| hypothetical protein PBAL39... 53 4e-06
gi|21220288|ref|NP_626067.1| integral membrane protein [Str... 53 4e-06
gi|119716803|ref|YP_923768.1| protein of unknown function D... 53 5e-06
gi|126465469|ref|YP_001040578.1| protein of unknown functio... 53 5e-06
gi|124486516|ref|YP_001031132.1| Nucleolar GTP-binding 1 [M... 53 7e-06
>gi|34541025|ref|NP_905504.1| hypothetical protein PG1335 [Porphyromonas gingivalis W83]
gi|34397340|gb|AAQ66403.1| membrane protein, putative [Porphyromonas gingivalis W83]
Length = 154
Score = 281 bits (720), Expect = 6e-75, Method: Composition-based stats.
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MLFESITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIV 60
MLFESITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIV
Sbjct: 1 MLFESITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIV 60
Query: 61 ASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTA 120
ASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTA
Sbjct: 61 ASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTA 120
Query: 121 RSLTGEVIEKGMRVEIVSYESIVLNVVVLGNDKQ 154
RSLTGEVIEKGMRVEIVSYESIVLNVVVLGNDKQ
Sbjct: 121 RSLTGEVIEKGMRVEIVSYESIVLNVVVLGNDKQ 154
>gi|116749739|ref|YP_846426.1| protein of unknown function DUF107 [Syntrophobacter fumaroxidans
MPOB]
gi|116698803|gb|ABK17991.1| protein of unknown function DUF107 [Syntrophobacter fumaroxidans
MPOB]
Length = 149
Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/131 (45%), Positives = 77/131 (58%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W+I I+LF+ EIFTP F LA FG+G A+ + A LGL + Q + FI +L++ F +RP
Sbjct: 8 WMILAIILFIAEIFTPAFVLASFGIGCMASSLAAGLGLGLKMQILGFIAGTLVAFFTVRP 67
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
+ KA PH T DAL+G VTETID GRV V GD W A + GE IE
Sbjct: 68 LFTRYCYKASPHTRTNLDALIGTIGRVTETIDDAGGSGRVTVGGDDWKAVAANGETIEMN 127
Query: 132 MRVEIVSYESI 142
RVE++ E +
Sbjct: 128 ARVEVIGIEGV 138
>gi|150021209|ref|YP_001306563.1| protein of unknown function DUF107 [Thermosipho melanesiensis
BI429]
gi|149793730|gb|ABR31178.1| protein of unknown function DUF107 [Thermosipho melanesiensis
BI429]
Length = 136
Score = 76.6 bits (187), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 16 GILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRPFMQK 75
G++L EI TP FF+ FG+GA A+ + A + +W+ F+V S + + L RP + K
Sbjct: 2 GLILMALEILTPTFFIFWFGVGALASSLVAYFIGNTIWELTVFVVVSGILVILTRPIINK 61
Query: 76 RAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKGMRVE 135
++ D +VG+K LV E I+ KG V ++GD W A S E+IEK V+
Sbjct: 62 MTGDEPRKINV--DDIVGKKALVIEEINNKKAKGLVKINGDTWRAFSKNDEIIEKDKYVK 119
Query: 136 IVSYESIVLNVVVLGND 152
++ E L V+ G +
Sbjct: 120 VLKVEGAHLIVIEEGEE 136
>gi|89210958|ref|ZP_01189339.1| Protein of unknown function DUF107 [Halothermothrix orenii H 168]
gi|89159416|gb|EAR79083.1| Protein of unknown function DUF107 [Halothermothrix orenii H 168]
Length = 144
Score = 76.3 bits (186), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W+I GILL + EIFTP FF+AC G+ I A LSI WQ FI+A+++ + LRP
Sbjct: 10 WVILGILLLILEIFTPSFFMACIGISGLVTAIAAYFELSIYWQITVFILANVIIFWKLRP 69
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
F K +T AL+G+K V + + T + GRV V G+ W A S GE E G
Sbjct: 70 FFIKHLYGPEEETATNVHALIGKKGKVIQEVS-TDNPGRVKVGGEDWMAVSSNGEKHEVG 128
Query: 132 MRVEIVSYESIVLNV 146
+VE++ + L V
Sbjct: 129 EQVEVIKVDGAKLIV 143
>gi|154249415|ref|YP_001410240.1| protein of unknown function DUF107 [Fervidobacterium nodosum
Rt17-B1]
gi|154153351|gb|ABS60583.1| protein of unknown function DUF107 [Fervidobacterium nodosum
Rt17-B1]
Length = 152
Score = 75.9 bits (185), Expect = 8e-13, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 6 ITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLS 65
ITPV +W+I G++L V EIFTP FF+ FG+G+ AA + A + +++ + FI+ S +
Sbjct: 2 ITPVAFWIIFGVILMVIEIFTPTFFIFWFGLGSLAAAVVAYFYENTLFELLTFIIVSGIL 61
Query: 66 LFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTG 125
+ R +K + + S D +VG++ +V E ID KG V V+GD+W A S
Sbjct: 62 VLSSRKLAKKITGEEVR--SINVDEIVGKEAVVIEKIDNRQSKGVVKVNGDMWRAVSFDD 119
Query: 126 EV 127
V
Sbjct: 120 NV 121
>gi|15643628|ref|NP_228674.1| hypothetical protein TM0865 [Thermotoga maritima MSB8]
gi|4981400|gb|AAD35947.1|AE001753_3 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 140
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 11 WWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
+WL+ G++L V EI TP FF+ FG+GA AA + +L L + Q + F S++ +FL R
Sbjct: 6 FWLVLGVILMVAEILTPTFFIFWFGVGALAASL-VSLYLGVYVQIIVFAAVSIVLVFLTR 64
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIE 129
+Q HV + + G+ LV ETID G V +DGDVW A + EVIE
Sbjct: 65 RLVQNWESPRKIHV----EEIAGKVALVIETIDNRKGTGLVKIDGDVWRAYAEDDDEVIE 120
Query: 130 KGMRVEIVSYE 140
KG V+I+ E
Sbjct: 121 KGEHVKIMKVE 131
>gi|148269207|ref|YP_001243667.1| protein of unknown function DUF107 [Thermotoga petrophila RKU-1]
gi|147734751|gb|ABQ46091.1| protein of unknown function DUF107 [Thermotoga petrophila RKU-1]
Length = 140
Score = 72.8 bits (177), Expect = 5e-12, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 11 WWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
+WL+ G++L V EI TP FF+ FG+GA AA + +L L + Q + F S++ +F R
Sbjct: 6 FWLVLGVILMVAEILTPTFFIFWFGVGALAASL-VSLYLGVYVQIIVFAAVSIVLVFFTR 64
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIE 129
+Q HV + + G+ LV ETID G V +DGDVW A + EVIE
Sbjct: 65 RLVQNWESPRKIHV----EEIAGKVALVIETIDNRKGTGLVKIDGDVWRAYAEDDDEVIE 120
Query: 130 KGMRVEIVSYE 140
KG V+I+ E
Sbjct: 121 KGEHVKIMKVE 131
>gi|86740057|ref|YP_480457.1| protein of unknown function DUF107 [Frankia sp. CcI3]
gi|86566919|gb|ABD10728.1| protein of unknown function DUF107 [Frankia sp. CcI3]
Length = 144
Score = 69.3 bits (168), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 11 WWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
W +IAG L+ V E+ T LA F + A A LG+ +VWQ V F+VA+ LR
Sbjct: 7 WIVIAGALV-VGELLTLDLTLAMFALAALIGAGVALLGVDLVWQIVAFVVAAGGFGLGLR 65
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIE 129
P +++ Q+ P + TGADALVG + +V E +D GRV + G++W+ARS T V+E
Sbjct: 66 PVAKRQLQRT-PPLLTGADALVGERAMVVERVD--GGGGRVKIKGEIWSARSYPTTTVLE 122
Query: 130 KGMRVEIV 137
G ++
Sbjct: 123 AGSEARVL 130
>gi|156868300|gb|EDO61672.1| hypothetical protein CLOLEP_02072 [Clostridium leptum DSM 753]
Length = 147
Score = 66.6 bits (161), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W+ A +LL + E T F +G AA++ + I Q F+ S+LSL + RP
Sbjct: 8 WIAAIVLLAILEGATAQLVCIWFVIGGIAALVTSIFTDVIWIQLTVFVAVSILSLLITRP 67
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
++K + T A +VG+K +VTE ++ KG+V V G +WTARS+ VI KG
Sbjct: 68 LVKK--AMSFQKEDTNAGRIVGQKGIVTEAVENDQGKGQVNVSGSIWTARSMDQTVIPKG 125
Query: 132 MRVEIVSYESIVLNV 146
V + + E + L V
Sbjct: 126 ASVLVDAIEGVKLIV 140
>gi|119960574|ref|YP_947933.1| putative integral membrane protein [Arthrobacter aurescens TC1]
gi|119947433|gb|ABM06344.1| putative integral membrane protein [Arthrobacter aurescens TC1]
Length = 168
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 1 MLFESITPVQW--WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFF 58
M+FE + W WL + V E+ T F G GA A +I G Q V F
Sbjct: 15 MMFEWLGENWWALWLTVFLAFSVVEMLTLDLFFIMLGGGALAGLIADFAGADFWLQIVIF 74
Query: 59 IVASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVW 118
V SLL + +RP K K + D L+G+ LV E + T+ G V + GDVW
Sbjct: 75 SVVSLLMIVFVRPVAMKHLHKGPAEQRSNIDRLIGQSALVIEAVSGTS--GLVKIGGDVW 132
Query: 119 TARSLTGEVIEKGMRVEI 136
+ARS G V++ G V++
Sbjct: 133 SARSTAG-VLDAGSTVQV 149
>gi|115380091|ref|ZP_01467130.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|115362897|gb|EAU62093.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
Length = 160
Score = 63.9 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 ITPVQW--WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASL 63
+TP W WL A ++ EI GF F +GA A + +ALGL I Q + F V
Sbjct: 3 LTPTAWQLWLAAALVFGALEIKLSGFVTLWFAIGALVASLASALGLGIDGQLLLFTVVCG 62
Query: 64 LSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTET-IDPTTDKGRVAVDGDVWTARS 122
R ++ + + TG +A++G+ +VTE +DP G V ++G++W ARS
Sbjct: 63 ALFAASRTLFKEAFMRTATPLRTGVEAMLGQDAVVTEALLDP--QGGTVRINGELWAARS 120
Query: 123 LTGEVIEKGMRVEIVSYESIVLNV 146
L+G + E G RV + E + L V
Sbjct: 121 LSGPMGE-GERVTVEQVEGLKLWV 143
>gi|154484008|ref|ZP_02026456.1| hypothetical protein EUBVEN_01716 [Eubacterium ventriosum ATCC
27560]
gi|149735050|gb|EDM50936.1| hypothetical protein EUBVEN_01716 [Eubacterium ventriosum ATCC
27560]
Length = 143
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
WL+ ++ E+ + G F +GA A + A LG + + Q V F+V +++ L +RP
Sbjct: 8 WLVVFVVFAALELVSLGLTCIWFAIGALAGCVAALLGANWIVQAVVFLVVTMVVLIFIRP 67
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
F K T +++ G++ V ID KG + VDG WTARS+ GE+I K
Sbjct: 68 FAIKYVNNKAE--KTNVESMAGKQGKVVVEIDNINAKGMIKVDGMEWTARSVDGEIIPKD 125
Query: 132 MRVEIVSYESI 142
V +VS E +
Sbjct: 126 SLVTVVSVEGV 136
>gi|126698457|ref|YP_001087354.1| hypothetical protein CD0880 [Clostridium difficile 630]
gi|145955764|ref|ZP_01804765.1| hypothetical protein CdifQ_04000972 [Clostridium difficile
QCD-32g58]
gi|115249894|emb|CAJ67713.1| putative membrane protein [Clostridium difficile 630]
Length = 148
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
WLI +L + E+ TP L F +GA I ++ SI Q + F V S+ L +
Sbjct: 5 WLIVAVLFGIAEMLTPSLTLIWFSVGAVILIFLSSFIESIFLQILIFAVISIAMLVVATK 64
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
+ K+ + +T A++ +K +VTE I P + G V V+ + WTA S+ GE IEKG
Sbjct: 65 KIVKKDKGY--KSNTNLQAMMSKKGIVTEEISPN-NTGLVVVEHETWTAISIDGEKIEKG 121
Query: 132 MRVEIVSYESIVLNV 146
VE++ E + L V
Sbjct: 122 STVEVLKIEGVKLVV 136
>gi|153011583|ref|YP_001372797.1| protein of unknown function DUF107 [Ochrobactrum anthropi ATCC
49188]
gi|151563471|gb|ABS16968.1| protein of unknown function DUF107 [Ochrobactrum anthropi ATCC
49188]
Length = 153
Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGM-----GAFAAIIPAALGLSIVWQTVFFIVASLLSL 66
WL+ G++L + EI PGFF FG+ GA A ++ + G +QTV F+V +++ +
Sbjct: 14 WLVFGLILLILEISAPGFFFIWFGLAALVTGALAFLLSSTTGFGWQFQTVVFLVLAVIFV 73
Query: 67 FLLRPFMQKRAQKA-LPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTG 125
+ R F R+ A P ++ + LVG++ +TE I +GR+ ++ +W + G
Sbjct: 74 LVGRRFFGSRSTDADEPLLNRRGEQLVGQRATLTEPI--INGRGRIRINDTMWRVK---G 128
Query: 126 EVIEKGMRVEIVSYESIVLNVVV 148
+ G V +V+++ + L + V
Sbjct: 129 PDLPTGTEVRVVAFDPVSLEIEV 151
>gi|153853512|ref|ZP_01994892.1| hypothetical protein DORLON_00881 [Dorea longicatena DSM 13814]
gi|149753667|gb|EDM63598.1| hypothetical protein DORLON_00881 [Dorea longicatena DSM 13814]
Length = 144
Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
WL I+L + EI T G F GA A +G + Q F++ S+L L L RP
Sbjct: 6 WLAIFIVLLIIEIATMGLTTIWFAGGALLAFCAGLVGFGLGVQIGVFVIVSILLLILTRP 65
Query: 72 ----FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARS 122
F + QK T A++L+G+ LVTE ID KG+V + G +W+A++
Sbjct: 66 IAVKFFNQERQK------TNAESLIGQHALVTEDIDTIKAKGQVEIRGQIWSAKT 114
>gi|156863599|gb|EDO57030.1| hypothetical protein CLOL250_02216 [Clostridium sp. L2-50]
Length = 149
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W + ++ + EI T G F GA + I G S++ Q + F V SL+ LF RP
Sbjct: 12 WSVIFMVCIIIEIITLGLTTIWFAGGALVSAISVFFGTSLIIQILIFAVISLVLLFTTRP 71
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIEK 130
K K T ++LVG++V+V+ETID G+V V+G WTAR+ ++I +
Sbjct: 72 VALKHF-KLSDMEKTNVESLVGKQVIVSETIDNLKATGQVKVNGLEWTARAADETDIIPQ 130
Query: 131 GMRVEIVSYESIVLNV 146
G V I + L V
Sbjct: 131 GTEVTINEVSGVKLIV 146
>gi|145595537|ref|YP_001159834.1| protein of unknown function DUF107 [Salinispora tropica CNB-440]
gi|145304874|gb|ABP55456.1| protein of unknown function DUF107 [Salinispora tropica CNB-440]
Length = 167
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W++ G++L V EIFT FL F +GAFAA AALG + Q V F V S L+L RP
Sbjct: 17 WIVVGVVLAVAEIFTTTLFLIMFAVGAFAAAGAAALGAPVEIQAVVFAVVSALTLLGARP 76
Query: 72 FMQKRAQ-KALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTG-EVIE 129
+++R + + G A+ G LV E +D D G V +DG++W ARS +V
Sbjct: 77 ALRRRTTLTSTEDRAFGVGAIEGNTALVLERVD--ADNGLVKIDGELWQARSYDATQVFA 134
Query: 130 KGMRVEIV 137
G RV+++
Sbjct: 135 PGDRVQVI 142
>gi|72162625|ref|YP_290282.1| putative integral membrane protein [Thermobifida fusca YX]
gi|71916357|gb|AAZ56259.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 146
Score = 58.9 bits (141), Expect = 9e-08, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 21 VFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRPFMQKRAQKA 80
V E+FT L G A A + A G+ + Q + F VAS L ++RP + +R
Sbjct: 16 VAELFTLTLALGLIGAAALIAGVVGAFGVGLTGQVLVFAVASAAGLLVVRP-IARRHMTQ 74
Query: 81 LPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEV-IEKGMRVEIVSY 139
P + +G +ALVGR LV E I T GR+ + G+ W+AR L + I G V+++
Sbjct: 75 PPPLRSGTEALVGRSALVVEEI--TATGGRIKLQGEEWSARCLDETLRIPVGAHVDVMEI 132
Query: 140 E 140
E
Sbjct: 133 E 133
>gi|111221553|ref|YP_712347.1| putative integral membrane protein [Frankia alni ACN14a]
gi|111149085|emb|CAJ60768.1| putative integral membrane protein [Frankia alni ACN14a]
Length = 144
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 11 WWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
W ++AG LL V E+ T L F + A A LG+ + WQ V F+VA+ LR
Sbjct: 7 WVVVAGALL-VGELLTLDLTLVMFSLAALVGAAVAVLGVDVAWQIVGFVVAAGGFGLGLR 65
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIE 129
P ++ Q+ P + TG +AL+G + LV E + + D GRV + G+VW+ARS T V+E
Sbjct: 66 PVARRHLQRG-PELRTGTEALLGEQALVVEQV--SGDGGRVKIKGEVWSARSYPTTTVLE 122
Query: 130 KGMRVEIV 137
G + ++
Sbjct: 123 VGSQAHVL 130
>gi|51245722|ref|YP_065606.1| hypothetical protein DP1870 [Desulfotalea psychrophila LSv54]
gi|50876759|emb|CAG36599.1| hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 153
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAAL-GLSIVWQTVFFIVASLLSLFLLR 70
W + G+L + E+ PGF L F G + A + A L + + Q + FI++SLL LF LR
Sbjct: 13 WFLVGVLFLIVELLLPGFILIFFTAGCWIAGLTAWLTDIGLPTQILIFIISSLLFLFSLR 72
Query: 71 PFMQK--RAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVI 128
+ K + H ++ +G+ LVT+ I T G + V G W R++ E I
Sbjct: 73 RYCLKTFKGSTRDDHEDPYINSKIGKTALVTKEISANT-PGEIKVMGSFW--RAVADESI 129
Query: 129 EKGMRVEIVSYES 141
E+G V + S ES
Sbjct: 130 EEGQSVLVTSQES 142
>gi|114706194|ref|ZP_01439097.1| hypothetical protein FP2506_17049 [Fulvimarina pelagi HTCC2506]
gi|114539040|gb|EAU42161.1| hypothetical protein FP2506_17049 [Fulvimarina pelagi HTCC2506]
Length = 156
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 5 SITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAF-----AAIIPAALGLSIVWQTVFFI 59
S P WW IAG LL E+ +PG +L FG+ A A +P +L I Q + F
Sbjct: 4 SFEPEHWWWIAGFLLLALELASPGVYLLFFGLAALVVGTNAFFLPDSL-FGISQQLIAFA 62
Query: 60 VASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWT 119
S +++L + + K A LVGR+ ++TE I T+ +GR + WT
Sbjct: 63 TVSAAAIYLGGRWYRSSRGKGDEMPDNPARRLVGRETVLTEAI--TSGRGRAKIGDSWWT 120
Query: 120 ARSLTGEVIEKGMRVEIVSYESIVLNV 146
+ G + +G RV I + + +L+V
Sbjct: 121 ---VEGPDLPEGTRVRIHAVSANILSV 144
>gi|21225503|ref|NP_631282.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8546937|emb|CAB94649.1| putative integral membrane protein. [Streptomyces coelicolor A3(2)]
Length = 146
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
WLI +L + EIFT L G+ A AA GLS +Q + F V S ++LF LRP
Sbjct: 10 WLIVSAVLVLAEIFTLTAALGMLGVAALITAGSAAAGLSTPFQFLVFTVVSAVTLFFLRP 69
Query: 72 -----FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGE 126
+Q + Q+ G DALVG+ V D T +GRV + G+ WTARS
Sbjct: 70 VALRHLVQPQTQR------FGVDALVGQAAYVVS--DVTGREGRVRIGGEEWTARSYDET 121
Query: 127 -VIEKGMRVEIV 137
VI +G V+++
Sbjct: 122 LVIPRGATVDVL 133
>gi|111024168|ref|YP_707140.1| hypothetical protein RHA1_ro07218 [Rhodococcus sp. RHA1]
gi|110823698|gb|ABG98982.1| conserved hypothetical protein [Rhodococcus sp. RHA1]
Length = 140
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVW-QTVFFIVASLLSLFLLR 70
WL+AG+LL E T FFL GA A A+ VW V F V SL + +R
Sbjct: 3 WLVAGVLLAAAEALTGDFFLLMLAGGALATAGVTAITDFPVWVDAVIFGVLSLALILGVR 62
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIE 129
P + ++ + P TG +AL G++ LV E + G++ + GDVWTAR L + EV
Sbjct: 63 PVLLRKFETP-PPTPTGIEALTGKQALVLEEV--AEHAGQIKLGGDVWTARPLDSTEVYP 119
Query: 130 KGMRVEIVSYE 140
G V ++ +
Sbjct: 120 PGTTVTVMQID 130
>gi|154502546|ref|ZP_02039606.1| hypothetical protein RUMGNA_00359 [Ruminococcus gnavus ATCC 29149]
gi|153796738|gb|EDN79158.1| hypothetical protein RUMGNA_00359 [Ruminococcus gnavus ATCC 29149]
Length = 146
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
WL ++L + E+ T G F GA AA+I LG+ +WQ FI+ S + ++ RP
Sbjct: 8 WLALFVILLIVELLTVGLTSIWFAGGALAALILELLGVDFIWQIGAFILVSFVLVYFTRP 67
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
F + H T + VG+ V +T+ +D G+ +DG WT R+ EV+EK
Sbjct: 68 FAVRYVNAH--HEKTNYEQAVGKIVRITQRVDDLAQTGKGILDGMEWTVRTDGKEVLEKD 125
Query: 132 MRVEIVSYESIVLNV 146
++ + L V
Sbjct: 126 TLARVIRISGVKLIV 140
>gi|119882271|ref|ZP_01648543.1| protein of unknown function DUF107 [Salinispora arenicola CNS205]
gi|119824872|gb|EAX27430.1| protein of unknown function DUF107 [Salinispora arenicola CNS205]
Length = 183
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W++ G++L + EIFT FL F +GAFAA AA+G + Q V F V S L++ RP
Sbjct: 33 WIVVGVVLAIAEIFTTTLFLIMFAVGAFAAAGAAAIGAPVEIQAVVFAVVSALTVLGARP 92
Query: 72 FMQKRAQKALPHVST-GADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTG-EVIE 129
+++R A S G A+ G LV E +D D G V +DG++W ARS +V
Sbjct: 93 ALRRRITLASTDDSPFGVGAIEGSAALVLERVD--VDHGLVKIDGELWQARSYDATQVFV 150
Query: 130 KGMRVEIV 137
G RV+++
Sbjct: 151 PGDRVQVI 158
>gi|108757890|ref|YP_632163.1| NfeD family protein [Myxococcus xanthus DK 1622]
gi|108461770|gb|ABF86955.1| NfeD family protein [Myxococcus xanthus DK 1622]
Length = 160
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 29 FFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRPFMQKRAQKALPHVSTGA 88
F + +GA A+ I AALGLS+ Q F S+ R + + H+ TG
Sbjct: 28 FMVLWLAVGALASSIGAALGLSLNGQLYLFTAVSVALFAASRTLFKSVFMRDAAHLKTGI 87
Query: 89 DALVGRKVLVTETI-DPTTDKGRVAVDGDVWTARSLTGEVIEKGMRVEIVSYESI 142
+A++G++ +V E++ DP G V ++G++WTARSL+G V E E+V+ E +
Sbjct: 88 EAMLGQEAVVVESLGDPL--GGTVRINGELWTARSLSGPVPEG----ELVTVEQV 136
>gi|15678720|ref|NP_275836.1| hypothetical protein MTH693 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2621778|gb|AAB85198.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 146
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 8 PVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLF 67
P W +IA I L + E+ T GFFL F GA AA LG Q + F S++ L
Sbjct: 7 PESWIIIAAICL-IGEMLTTGFFLLWFAFGALAAAALGYLGFDTTAQFITFAAVSVVLLG 65
Query: 68 LLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEV 127
+ RPF + + P +D L+GRK +V E I P + G V VDG+ W R+ +G V
Sbjct: 66 VSRPFAARITGE--PSKKAVSDRLIGRKGVVMEAISP-QNSGLVKVDGETW--RATSGTV 120
Query: 128 IEKGMRVEIVSYESIVLNVVVLGNDK 153
++ G V + + E + L V L K
Sbjct: 121 LDVGEEVSVKAIEGVKLVVEKLEEQK 146
>gi|54025442|ref|YP_119684.1| hypothetical protein nfa34720 [Nocardia farcinica IFM 10152]
gi|54016950|dbj|BAD58320.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 143
Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFA-AIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
WL+AGILL E+ L G+ A A + AA S++ V F V +L+ L +R
Sbjct: 6 WLVAGILLAAAEMLVGDLTLLMIGVAALGTAGVSAAADTSVIVDAVVFGVITLVLLLGVR 65
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLT-GEVIE 129
P +++R P V T AL G+ LV E + T G V + G+VWTAR + G+V E
Sbjct: 66 PVLRRRFGTP-PPVPTNVHALPGKTALVLEEVTDTA--GLVKLAGEVWTARPMNQGDVFE 122
Query: 130 KGMRVEIVSYE 140
G V ++ +
Sbjct: 123 PGTTVSVMEID 133
>gi|147919405|ref|YP_686856.1| hypothetical protein RCIX2447 [uncultured methanogenic archaeon
RC-I]
gi|110622252|emb|CAJ37530.1| hypothetical protein [uncultured methanogenic archaeon RC-I]
Length = 157
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 13 LIAGILLFVFEIFTPGFFLAC-----FGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLF 67
LI G LL V E TPGFF+A MG + P L + W + F + +++
Sbjct: 10 LIVGALLLVVEALTPGFFVAVPATILIVMGLLVVLAPGLL--TFPWGLIIFALVTIVVSI 67
Query: 68 LLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEV 127
F ++ A P + TG D+L G+ V + P + G+V VD +W+A S E
Sbjct: 68 ATILFYRRLAPGHKP-IVTGEDSLAGKTGEVIRDVVPGSIDGKVKVDEQIWSATS--AEK 124
Query: 128 IEKGMRVEIVSYESI 142
IE G RV ++ E +
Sbjct: 125 IEAGQRVRVIRAEGV 139
>gi|15894338|ref|NP_347687.1| Uncharacterized conserved protein (possible membrane) [Clostridium
acetobutylicum ATCC 824]
gi|15023965|gb|AAK79027.1|AE007621_1 Uncharacterized conserved protein (possible membrane) [Clostridium
acetobutylicum ATCC 824]
Length = 146
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W+I I + V + T GF F GA AII LG I Q V F + S+ L + P
Sbjct: 8 WIIIAIFMVVIDFGTSGFLFVWFSAGAVVAIIAGLLGAPITVQIVLFAIISIALLSVGYP 67
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
+K + + + +GR+ V D ++ VDG WT +++ GE I+KG
Sbjct: 68 LSKKLLNRTVRKTPLMEEKYIGRE--VKAEADMEVGNSKLKVDGIYWTVKNV-GEAIKKG 124
>gi|134100317|ref|YP_001105978.1| membrane protein implicated in regulation of membrane protease
activity [Saccharopolyspora erythraea NRRL 2338]
gi|133912940|emb|CAM03053.1| membrane protein implicated in regulation of membrane protease
activity [Saccharopolyspora erythraea NRRL 2338]
Length = 143
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 4/133 (3%)
Query: 6 ITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLS 65
+ P WLIAG++L E+ + F L G GA AA +ALG+ + F SL
Sbjct: 1 MVPALLWLIAGVVLIAAEVLSGDFVLVMLGAGALAAAGASALGVPLGLDAAVFAALSLGL 60
Query: 66 LFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-T 124
+FL RP +++R + + T DALVG K +V T+D GRV + G++W+AR+
Sbjct: 61 IFLARPALKRR-MRVEHELKTNVDALVGHKAVVESTVD--AHGGRVRIGGELWSARAFDE 117
Query: 125 GEVIEKGMRVEIV 137
+V+ G V ++
Sbjct: 118 TQVMHSGQTVTVM 130
>gi|116670737|ref|YP_831670.1| protein of unknown function DUF107 [Arthrobacter sp. FB24]
gi|116610846|gb|ABK03570.1| protein of unknown function DUF107 [Arthrobacter sp. FB24]
Length = 153
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 2 LFESITPVQW--WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFI 59
+FE + W WL + V E+ T F G GA A ++ G Q V F
Sbjct: 1 MFEWLGENWWALWLTVFLAFAVVEMLTLDLFFIMLGGGALAGLLADFAGADFWLQIVVFC 60
Query: 60 VASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWT 119
V SLL + +RP K +K T D L+G LV ET+ +T G V + GDVW+
Sbjct: 61 VVSLLMVVFVRPVALKHLKKGPAEQRTNIDRLIGESALVMETV--STSSGLVKIGGDVWS 118
Query: 120 ARSLTGEVIEKGMRVEIVSYE 140
ARS G V+ G RV + + E
Sbjct: 119 ARSENG-VLNAGQRVVVSAIE 138
>gi|118617157|ref|YP_905489.1| hypothetical protein MUL_1496 [Mycobacterium ulcerans Agy99]
gi|118569267|gb|ABL04018.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length = 144
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQT-VFFIVASLLSLFLLR 70
WLIA ++L E T FL GA AA L +W F++ S+L L L+R
Sbjct: 7 WLIAALVLAGAEALTGDIFLLMLSGGALAASGIRWLTDWPLWADGAVFLIVSVLLLALVR 66
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLT-GEVIE 129
P ++++ A + G AL G+ LV + + D G++ ++G+VWTAR L G+V E
Sbjct: 67 PALRRKLAPA-KALQLGIKALEGKNALVLDRV--ARDNGQLKIEGEVWTARPLNDGDVFE 123
Query: 130 KGMRVEIVSYE 140
G V +V E
Sbjct: 124 PGDSVTVVHIE 134
>gi|154508905|ref|ZP_02044547.1| hypothetical protein ACTODO_01416 [Actinomyces odontolyticus ATCC
17982]
gi|153798539|gb|EDN80959.1| hypothetical protein ACTODO_01416 [Actinomyces odontolyticus ATCC
17982]
Length = 155
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W++ +L + E+ + F F +GA AA I A+G ++ Q + FIV S+ L +LRP
Sbjct: 5 WILGALLCGIIEVMSVSFVFLMFAIGALAAGIAGAVGANLTIQVIVFIVVSIALLVILRP 64
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
F++ R ++ +V + D L+G+ VTE + GR+ G W+AR+ G + G
Sbjct: 65 FLKGRIDRSSGYVPSNTDGLIGKTGYVTEAVGER--HGRIQFSGGEWSART-EGPTLPVG 121
Query: 132 MRVEI 136
V +
Sbjct: 122 TEVRV 126
>gi|28210404|ref|NP_781348.1| hypothetical protein CTC00680 [Clostridium tetani E88]
gi|28202841|gb|AAO35285.1| conserved protein [Clostridium tetani E88]
Length = 146
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
W++ G +IFT F F +G+ A+I ++LG S Q + FI S++ L + P
Sbjct: 8 WIVIGATAITVDIFTSSFLFVWFTIGSIVALIISSLGYSFSVQFIAFIFTSVVLLAVGYP 67
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKG 131
++K +K++P + R + V + I ++ + +DG WT + G++I+KG
Sbjct: 68 IVRKTIKKSVPKTLPMGQNYINRIITVEKDI---KEEELIKIDGIYWTVLN-EGKLIKKG 123
Query: 132 MRVEIVS 138
+ +I++
Sbjct: 124 EKAKIIA 130
>gi|149279943|ref|ZP_01886069.1| hypothetical protein PBAL39_14204 [Pedobacter sp. BAL39]
gi|149229323|gb|EDM34716.1| hypothetical protein PBAL39_14204 [Pedobacter sp. BAL39]
Length = 147
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAF-AAIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
W G F+ E PGF L FG+GA+ A++ +S+ Q + FI++SLL++ R
Sbjct: 11 WFCLGFAFFLLEFLVPGFILFFFGVGAWIVALVAFFTDVSLNTQIILFILSSLLTVVFFR 70
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEK 130
+++++ D +G KV + ET+ + G+V G W A S + I
Sbjct: 71 SWVKRKLGMGNTAGQQLEDEFIG-KVALAETVIGPGNNGKVEFKGASWEASS--EQDIAA 127
Query: 131 GMRVEIVSYESIVLNV 146
G RV I SI+L V
Sbjct: 128 GERVIITGNRSILLIV 143
>gi|21220288|ref|NP_626067.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|5123533|emb|CAB45289.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 143
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 11 WWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLR 70
WWL+A L + + T F +GA AA + + LG +V Q + F++ S+ + ++R
Sbjct: 9 WWLVAAAALGIPLVVTAMPEFGMFAVGAVAAAVASGLGADLVVQVLVFVIVSVALIAVVR 68
Query: 71 PFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSL-TGEVIE 129
P + R + P ++TG DAL GR+ +V E +D GR+ + G++W+AR+L TG E
Sbjct: 69 P-IAARHRSQQPQLATGVDALKGRQAVVLERVDGA--GGRIKLAGEIWSARALDTGRAFE 125
Query: 130 KGMRVEIV 137
G V++V
Sbjct: 126 PGEEVDVV 133
>gi|119716803|ref|YP_923768.1| protein of unknown function DUF107 [Nocardioides sp. JS614]
gi|119537464|gb|ABL82081.1| protein of unknown function DUF107 [Nocardioides sp. JS614]
Length = 153
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 12 WLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRP 71
WL +L + E+ + L +GA A ++ AALG ++V Q + A++ L L+RP
Sbjct: 12 WLGVAAVLGMAELVSLDLVLIMLAVGALAGMVTAALGAAVVLQVLVAGGAAVAMLALVRP 71
Query: 72 FMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEV-IEK 130
+ +R + P + G LVG++ LVT+ I + GR+ + G+ W+A V IE
Sbjct: 72 SLVERLHRG-PELRLGTSKLVGQRALVTQRITGLS-VGRIRLAGETWSAAPYDEHVTIEP 129
Query: 131 GMRVEI 136
G VE+
Sbjct: 130 GATVEV 135
>gi|126465469|ref|YP_001040578.1| protein of unknown function DUF107 [Staphylothermus marinus F1]
gi|126014292|gb|ABN69670.1| protein of unknown function DUF107 [Staphylothermus marinus F1]
Length = 152
Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 21 VFEIFTPGFFLACFGM-----GAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRPFMQK 75
V EI TPGFF+A G G A+ P + + V +FF+ + + L + +
Sbjct: 16 VIEIATPGFFIAVPGTILIIYGVLLALFPELINIPYVPWILFFLSFPIGYITYL---IYR 72
Query: 76 RAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKGMR 133
+ P V+ + L+G+ +V ET+ P + +G+V +D DVW+A S EV+E G +
Sbjct: 73 KLSPPSPPVTESYEGLIGKVGVVVETVKPDSLEGKVRIDSDVWSATS--DEVVEPGRK 128
>gi|124486516|ref|YP_001031132.1| Nucleolar GTP-binding 1 [Methanocorpusculum labreanum Z]
gi|124364057|gb|ABN07865.1| protein of unknown function DUF107 [Methanocorpusculum labreanum Z]
Length = 154
Score = 52.8 bits (125), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 2 LFESITPVQWWLIA-GILLFVFEIFTPGFFLACFGMGA-FAAIIPAALGLSIVWQT--VF 57
L S T + W LIA G L + E +PGFF+A G F ++ GL + +
Sbjct: 4 LLLSPTVLPWVLIAIGAALLLIEASSPGFFMAVPGTAMIFLGVMDFFFGLEFLASPLGIT 63
Query: 58 FIVASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDV 117
V + + ++ F+ K+ ++G D++VG+ VT I P + G+V VDG V
Sbjct: 64 LTVLAAICAAVITVFLYKKLSPDQKPTTSGQDSIVGKSGFVTVEIVPDSISGKVEVDGVV 123
Query: 118 WTARSLTGEVIEKGMRVEIVSYESIVLNV 146
W+A+ G I G +VE+ + + L V
Sbjct: 124 WSAKCTDG-TIPPGTKVEVTAASGVHLTV 151
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.328 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,524,746
Number of Sequences: 5470121
Number of extensions: 20589536
Number of successful extensions: 87787
Number of sequences better than 1.0e-05: 109
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 87676
Number of HSP's gapped (non-prelim): 112
length of query: 154
length of database: 1,894,087,724
effective HSP length: 117
effective length of query: 37
effective length of database: 1,254,083,567
effective search space: 46401091979
effective search space used: 46401091979
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)