Remotely accessible blast databases

BLAST Databases Available for Remote Access

Tao Tao, Ph.D.
User Service
NCBI, NLM, NIH

TOC

1. Introduction
2. General Databases
3. Genome Specific Databases for Higher Organisms
4. Databases for Invertebrates
5. Databases for Protozoas
- 5.1 Databases for Various Plasmodia
- 5.2 Databases for Other Pathogenic Protozoa
6. Databases for Plants and Fungi
7. Databases under Genomes and Microbial Directories
8. SNP Databases
9. Trace Databases
10. Feedback

There is a large collection of databases available from NCBI BLAST server. They include the standard sets of nucleotide and protein databases as well as organism specific databases (through special blast pages). All of them are available for remote access through URLAPI and blastcl3 client.

To facilitate their access by our user community, we listed these databases in this document. The databases are grouped into several categories according to common characteristics such as their sequence nature, database subdirectory, or mostly by the BLAST Web pages from which they are accessible.

For databases without directory prefix, we can call them in URLAPI useing DATABASE=database. In blastcl3, we can use -d database. The database name should be exactly as it is given in the "DATABASE" column.

The following examples call the database refseq_rna in URLAPI and blastcl3, respectively.

http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?DATABASE=refseq_rna&...

blastcl3 -d refseq_rna ....

For databases with directory prefix, we need to concatenate the strings under the "DB_DIR_PREFIX" and database name under "DATABASE".

The following examples call the database ref_contig under gpipe/9606/ in URLAPI and blastcl3, respectively.

http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?DATABASE=gpipe/9606/ref_contig&...

blastcl3 -d gpipe/9606/ref_contig ....

Refer to netblast.html for more information on using blastcl3. Refer to BLAST URLAPI for more information on using URL encoded commands to access NCBI BLAST web server.

2. General Databases

In this section, we list databases available from the "Nucleotide", "Protein", and "Translated" sections of the NCBI BLAST homepage. Users should access these databases without directory prefix.

Table 2 Content of Genera BLAST Databases

DB_DIR_PREFIX DATABASE CONTENT

-¹ 10090_genomic mouse genomic

- 10116_genomic rat genomic

- 180454_genomic anopheles gambiae genomic

- 7070_genomic red flour beetle genomic

- 7460_genomic honey bee genomic

- 7955_genomic zebrafish genomic

- 9031_genomic chicken genomic

- 9544_genomic macaca genomic

- 9598_genomic chimp genomic

- 9606_genomic human genomic

- 9615_genomic dog genomic

- 9913_genomic cow genomic

- chromosome chromosomes

- other_genomic other genomic

- refseq_genomic refseq genomic

- refseq_rna refseq rna

- env_nt env_nt

- est est combined

- est_human est human

- est_mouse est mouse

- est_others est others

- sts sts

- gss gss

- htgs htgs

- month.est month est

- month.gss month gss

- month.htgs month htgs

- month.nt month nt

- month.patnt month patnt

- month.sts month sts

- monthnt month nt

Test/gpipe/9606/ allcontig_and_rna human genomic and transcripts

Test/gpipe/10090/ allcontig_and_rna mouse genomic and transcripts

- nt nt, nucleotide nr

- patnt pat nucleotide

- pdbnt pdb nucleotide

- wgs wgs

- UniVec UniVec vector library

- alu alu repeat

- danio.lib danio rerio repeats²

- humrep combined human repeat libraries²

- rodents.lib rodents repeats²

- nr nr, protein

- refseq_protein refseq protein

- swissprot swissprot protein

- pataa pat protein

- pdbaa pdb protein

- month.pataa month pat protein

- monthaa month protein

- alu alu repeat protein

- env_nr env protein

geo geo geo

cdsearch/ cdd cdd³

cdsearch/ oasis_cog cog³

cdsearch/ oasis_kog kog³

cdsearch/ oasis_pfam pfam³

cdsearch/ oasis_smart smart³

repeat/ repeat_3055 repeat_3055²

repeat/ repeat_31032 repeat_31032²

repeat/ repeat_35128 repeat_35128²

repeat/ repeat_3702 repeat_3702²

repeat/ repeat_40674 repeat_40674²

repeat/ repeat_4530 repeat_4530²

repeat/ repeat_4751 repeat_4751²

repeat/ repeat_6238 repeat_6238²

repeat/ repeat_6239 repeat_6239²

repeat/ repeat_7165 repeat_7165²

repeat/ repeat_7227 repeat_7227²

repeat/ repeat_7719 repeat_7719²

repeat/ repeat_7955 repeat_7955²

repeat/ repeat_9606 repeat_9606²

repeat/ repeat_9989 repeat_9989²

NOTE:

newly introduced on December 18,2006.
¹ - means no database prefix.
² Species-specific repeat databases. For example, to rodent repeat filter, we can use the following

blastcl3 -p blastn -F "R -d rodents.lib" ...
...&PROGRAM=blastn&FILTER=R+-d+rodents.lib& ...

³ These databases are meant for RPSBLAST, even though they do work with blastp URLAPI. To call them in blastcl3, use

blastcl3 -R T -p blastp -d cdsearch/cdd...
..&PROGRAM=blastp&SERVICE=rpsblast&DATABASE=cdsearch/cdd&...

3. Genome Specific Databases for Higher Organisms

Those databases are those accessible through the Genome Blast pages. Currently only a limited set of organisms has this special setup. Technically, these databases are broken into two subsets, one tied to genome build/annotation and another simply organism specific with regular update. We are not distinguish them here.

3.1 Blast Databases for Primates

The databases behind the primate genome blast pages are listed here.

Table 3.1 Databases for Primates

DB_DIR_PREFIX DATABASE CONTENT

gp/9606.9558/ AACC_scaffolds.fa human AACC scaffolds

gp/9606.9558/ AADB_scaffolds.fa human AADB scaffolds

gp/9606.9558/ cra_csa human celera csa

gp/9606.9558/ cra_cwga human celera cwga

gp/9606.9558/ cra_wga human celera wga

gp/9606.9558/ hs_bes human bes

gp/9606.9558/ hs_est human est

gp/9606.9558/ hs_genbank_prot human genbank protein

gp/9606.9558/ hs_genbank_rna human genbank rna

gp/9606.9558/ hs_htg human htgs

gp/9606.9558/ hs_refm human refseq mrna

gp/9606.9558/ hs_refp human refseq protein

gp/9606.9558/ hsc_tcag human chr 7 (toronto HSC)

gpipe/9606/ all_contig human all contig

gpipe/9606/ alt_contig human alt contig

gpipe/9606/ gnomon_prot human predicted protein

gpipe/9606/ gnomon_rna human predicted rna

gpipe/9606/ protein human build protein

gpipe/9606/ ref_contig human refseq contig

gpipe/9606/ rna human build rna

gp/9598.12467/ AACZ_contigs chimp AACZ contigs

gp/9598.12467/ AACZ_map_scaffolds.fa chimp AACZ map scaffolds.fa

gp/9598.12467/ AACZ_scaffolds.fa chimp AACZ scaffolds

gp/9598.12467/ AACZ_unmap_scaffolds.fa chimp AACZ unmap scaffolds

gp/9598.12467/ AADA_contigs chimp AADA contigs

gp/9598.12467/ alt_chimp_wgs chimp alt wgs contigs

gp/9598.12467/ ptr_bes chimp bes

gp/9598.12467/ ptr_est chimp est

gp/9598.12467/ ptr_genbank_prot chimp genbank protein

gp/9598.12467/ ptr_genbank_rna chimp genbank rna

gp/9598.12467/ ptr_htg chimp htgs

gp/9598.12467/ ptr_refm chimp refseq mrna

gp/9598.12467/ ptr_refp chimp refseq protein

gp/9598.12467/ ref_chimp_wgs chimp refseq wgs contigs

gp/9544.12536/ AANU_contigs Macaca mulatta AANU contigs

gpipe/9598/ all_contig chimp all contig

gpipe/9598/ alt_contig chimp alt contig

gpipe/9598/ gnomon_prot chimp predicted protein

gpipe/9598/ gnomon_rna chimp predicted rna

gpipe/9598/ protein chimp build protein

gpipe/9598/ ref_contig chimp refseq contig

gpipe/9598/ rna chimp build rna

gp/9544.12536/ AANU_map_scaffolds.fa Macaca mulatta AANU map scaffolds

gp/9544.12536/ AANU_scaffolds.fa Macaca mulatta AANU scaffolds

gp/9544.12536/ AANU_unmap_scaffolds.fa Macaca mulatta AANU unmap scaffolds

gp/9544.12536/ mm_bes Macaca mulatta bes

gp/9544.12536/ mm_est Macaca mulatta est

gp/9544.12536/ mm_genbank_prot Macaca mulatta genbank prot

gp/9544.12536/ mm_genbank_rna Macaca mulatta genbank rna

gp/9544.12536/ mm_htg Macaca mulatta htgs

gp/9544.12536/ mm_refm Macaca mulatta refseq mrna

gp/9544.12536/ mm_refp Macaca mulatta refseq protein

gp/9544.12536/ mm_wgs_contigs Macaca mulatta wgs contigs

gpipe/9544/ all_contig Macaca all contig

gpipe/9544/ gnomon_prot Macaca predicted protein

gpipe/9544/ gnomon_rna Macaca predicted rna

gpipe/9544/ protein Macaca build protein

gpipe/9544/ ref_contig Macaca refseq contig

gpipe/9544/ rna Macaca build rna

3.2 Databases for Model Rodents

The databases behind the mouse and rat genome blast pages are listed here.

Table 3.2 Databases for Mouse and Rat

DB_DIR_PREFIX DATABASE CONTENT

gp/10090.9559/ AAHY_map_scaffolds.fa mouse AAHY mapped scaffolds

gp/10090.9559/ AAHY_scaffolds mouse AAHY scaffolds

gp/10090.9559/ AAHY_unmap_scaffolds.fa mouse AAHY unmapped scaffolds

gp/10090.9559/ arachne mouse arachene contigs

gp/10090.9559/ cra_wga mouse celera wgs contigs

gp/10090.9559/ gene_trap mouse gene trap sequences

gp/10090.9559/ mm_bes mouse bes

gp/10090.9559/ mm_est mosue est

gp/10090.9559/ mm_genbank_prot mouse genbank protein

gp/10090.9559/ mm_genbank_rna mouse genbank rna

gp/10090.9559/ mm_htg mouse htg

gp/10090.9559/ mm_refm mouse refseq mrna

gp/10090.9559/ mm_refp mouse refseq protein

gpipe/10090/ all_contig mouse all contigs

gpipe/10090/ alt_contig mouse alt contigs

gpipe/10090/ gnomon_prot mouse predicted proteins

gpipe/10090/ gnomon_rna mouse predicted rna

gpipe/10090/ protein mouse build protein

gpipe/10090/ ref_contig mouse refseq contigs

gpipe/10090/ rna mouse build rna

gp/10116.10621/ AAHX_map_scaffolds.fa rat AAHX mapped scaffolds

gp/10116.10621/ AAHX_scaffolds.fa rat AAHX scaffolds

gp/10116.10621/ AAHX_unmap_scaffolds.fa rat AAHX umapped scaffolds

gp/10116.10621/ AAHX_wgs rat AAHX wgs contigs

gp/10116.10621/ rgsc_wgs_contigs rgsc wgs contigs

gp/10116.10621/ rn_bes rat bes

gp/10116.10621/ rn_est rat est

gp/10116.10621/ rn_genbank_prot rat genbank protein

gp/10116.10621/ rn_genbank_rna rat genbank rna

gp/10116.10621/ rn_htg rat htgs

gp/10116.10621/ rn_refm rat refseq mrna

gp/10116.10621/ rn_refp rat refseq protein

gpipe/10116/ all_contig rat all contigs

gpipe/10116/ alt_contig rat alt contigs

gpipe/10116/ gnomon_prot rat predicted proteins

gpipe/10116/ gnomon_rna rat predicted mrna

gpipe/10116/ protein rat build protein

gpipe/10116/ ref_contig rat refseq contig

gpipe/10116/ rna rat build rna

3.3 Databases for Large Mammal

The databases for cow and dog are listed here. Both has "complete" genomes with Mapviewer. Links to Mapviewer are not accessible through blastcl3.

Table 3.3 Databases for Dog and Cow

DB_DIR_PREFIX DATABASE CONTENT

gp/9615.10726/ AAEX_scaffolds.fa dog AAEX scaffolds

gp/9615.10726/ bi_cfa_wgs baylor dog wgs

gp/9615.10726/ cfa_bes dog bes

gp/9615.10726/ cfa_est dog est

gp/9615.10726/ cfa_genbank_protein dog genbank protein

gp/9615.10726/ cfa_genbank_rna dog genbank rna

gp/9615.10726/ cfa_htg dog htgs

gp/9615.10726/ cfa_refm dog refseq mrna

gp/9615.10726/ cfa_refp dog refseq protein

gp/9615.10726/ tigr_cfa_wgs tiger dog wgs

gp/9615.10726/ tigr_dog_extra tiger dog extra wgs

gpipe/9615/ all_contig dog all contig

gpipe/9615/ gnomon_prot dog predicted protein

gpipe/9615/ gnomon_rna dog predicted rna

gpipe/9615/ protein dog build protein

gpipe/9615/ ref_contig dog refseq contig

gpipe/9615/ rna dog build rna

gp/9913.10708/ AAFC_scaffolds.fa cow AAFC scaffolds

gp/9913.10708/ baylor_wgs_contigs baylor cow wgs contigs

gp/9913.10708/ bt_bes cow bes

gp/9913.10708/ bt_est cow est

gp/9913.10708/ bt_genbank_prot cow genbank protein

gp/9913.10708/ bt_genbank_rna cow genbank rna

gp/9913.10708/ bt_htg cow htgs

gp/9913.10708/ bt_refm cow refseq mrna

gp/9913.10708/ bt_refp cow refseq

gpipe/9913/ all_contig cow all contig

gpipe/9913/ gnomon_prot cow predicted protein

gpipe/9913/ gnomon_rna cow predicted rna

gpipe/9913/ protein cow build protein

gpipe/9913/ ref_contig cow refseq contig

gpipe/9913/ rna cow build rna

3.4 Databases for Other Mammals

The organsims listed here do not have complete genomes.

Table 3.4 Databases for Other Mammals

DB_DIR_PREFIX DATABASE CONTENT

gp/9685.10703/ AANG_contigs cat AANG wgs contigs

gp/9685.10703/ fca_bes cat bes

gp/9685.10703/ fca_est cat est

gp/9685.10703/ fca_genbank_prot cat genbank prot

gp/9685.10703/ fca_genbank_rna cat genbank rna

gp/9685.10703/ fca_htg cat htgs

gp/9685.10703/ fca_refm cat refseq mrna

gp/9685.10703/ fca_refp cat refseq protein

gp/9823.10718/ ssc_bes pig bes

gp/9823.10718/ ssc_est pig est

gp/9823.10718/ ssc_genbank_prot pig genbank_prot

gp/9823.10718/ ssc_genbank_rna pig genbank_rna

gp/9823.10718/ ssc_htg pig htg

gp/9823.10718/ ssc_refm pig refm

gp/9823.10718/ ssc_refp pig refp

gp/9940.10709/ oar_bes sheep bes

gp/9940.10709/ oar_est sheep est

gp/9940.10709/ oar_genbank_prot sheep genbank protein

gp/9940.10709/ oar_genbank_rna sheep genbank rna

gp/9940.10709/ oar_htg sheep htgs

gp/9940.10709/ oar_refm sheep refseq mrna

gp/9940.10709/ oar_refp sheep refseq protein

gp/9986.12818/ oc_bes rabbit bes

gp/9986.12818/ oc_est rabbit est

gp/9986.12818/ oc_genbank_prot rabbit genbank_prot

gp/9986.12818/ oc_genbank_rna rabbit genbank_rna

gp/9986.12818/ oc_htg rabbit htg

gp/9986.12818/ oc_wgs_contigs rabbit wgs_contigs

gp/13616.12560/ md_est opossum est

gp/13616.12560/ md_genbank_prot opossum genbank protein

gp/13616.12560/ md_genbank_rna opossum genbank rna

gp/13616.12560/ md_htg opossum htgs

gp/13616.12560/ md_refm opossum refseq mrna

gp/13616.12560/ md_refp opossum refseq protein

gp/13616.12560/ md_wgs_contigs opossum wgs contigs

gp/30611.13680/ 30611_genbank_prot Otolemur garnettii genbank protein

gp/30611.13680/ 30611_htg Otolemur garnettii htgs

gp/30611.13680/ 30611_wgs_contigs Otolemur garnettii wgs contigs

3.5 Databases for Vertebrates

Here are the BLAST databases for various vertebrates, of which, chicken and Zebrafish has completed genomes.

Table 3.5 Databases for Vertebrates

DB_DIR_PREFIX DATABASE CONTENT

gp/9031.10804/ gga_bes chicken bes

gp/9031.10804/ gga_est chicken est

gp/9031.10804/ gga_genbank_prot chicken genbak protein

gp/9031.10804/ gga_genbank_rna chicken genbank rna

gp/9031.10804/ gga_htg chicken htgs

gp/9031.10804/ gga_refm chicken refseq mrna

gp/9031.10804/ gga_refp chicken refseq protein

gp/9031.10804/ gga_wgs chicken wgs cotings

gpipe/9031/ all_contig chicken all contig

gpipe/9031/ gnomon_prot chicken predicted protein

gpipe/9031/ gnomon_rna chicken predicted rna

gpipe/9031/ protein chicken build protein

gpipe/9031/ ref_contig chicken refseq contig

gpipe/9031/ rna chicken build rna

gp/59729.12898/ tg_bes Taeniopygia guttata bes

gp/59729.12898/ tg_est Taeniopygia guttata est

gp/59729.12898/ tg_genbank_prot Taeniopygia guttata genbank protein

gp/59729.12898/ tg_genbank_rna Taeniopygia guttata genbank rna

gp/59729.12898/ tg_htg Taeniopygia guttata htgs

gp/7955.9557/ dr_bes zebrafish bes

gp/7955.9557/ dr_est zebrafish est

gp/7955.9557/ dr_genbank_prot zebrafish genbank protein

gp/7955.9557/ dr_genbank_rna zebrafish genbank rna

gp/7955.9557/ dr_htg zebrafish htgs

gp/7955.9557/ dr_refm zebrafish refseq mrna

gp/7955.9557/ dr_refp zebrafish refseq protein

gp/7955.9557/ sanger_wgs_contigs sanger zebrafish wgs contig

gpipe/7955/ all_contig zebrafish all contig

gpipe/7955/ gnomon_prot zebrafish predicted protein

gpipe/7955/ gnomon_rna zebrafish predicted rna

gpipe/7955/ protein zebrafish build protein

gpipe/7955/ ref_contig zebrafish refseq contig

gpipe/7955/ rna zebrafish build rna

gp/8364.10706/ str_bes xenopus tropicalis bes

gp/8364.10706/ str_est xenopus tropicalis est

gp/8364.10706/ str_genbank_prot xenopus tropicalis genbank protein

gp/8364.10706/ str_genbank_rna xenopus tropicalis rna

gp/8364.10706/ str_refm xenopus tropicalis refseq mrna

gp/8364.10706/ str_refp xenopus tropicalis refseq protein

gp/8364.10706/ xl_est xenopus laevis est

gp/8364.10706/ xl_genbank_rna xenopus laevis genbank rna

gp/8364.10706/ xla_genbank_prot xenopus laevis genbank protein

gp/8364.10706/ xtr_gbrna Combined xenopus genbank rna

gp/8364.10706/ xtr_htg xenopus tropicalis htgs

4. Databases for Invertebrates

Here are the BLAST databases for various invertebrates. They are separated into several groups.

4.1 Databases for Mosquitos and Drosophila

BLAST databases for two mosquitos (Andes and Anephole) and various Drosophila are listed here.

Table 4.1 Databases for Mosquitos and Drosophia

DB_DIR_PREFIX DATABASE CONTENT

gp/7159.9551/ 7159_bes Aedes aegypti bes

gp/7159.9551/ 7159_est Aedes aegypti est

gp/7159.9551/ 7159_genbank_prot Aedes aegypti genbank prot

gp/7159.9551/ 7159_genbank_rna Aedes aegypti genbank rna

gp/7159.9551/ 7159_htg Aedes aegypti htgs

gp/7159.9551/ 7159_wgs_contigs Aedes aegypti wgs contigs

gp/7165.9553/ 7165_bes Anopheles gambiae bes

gp/7165.9553/ 7165_est Anopheles gambiae est

gp/7165.9553/ 7165_genbank_prot Anopheles gambiae genbank prot

gp/7165.9553/ 7165_genbank_rna Anopheles gambiae genbank rna

gp/7165.9553/ 7165_refg Anopheles gambiae refseq genomic

gp/7165.9553/ 7165_refm Anopheles gambiae refseq mrna

gp/7165.9553/ 7165_refp Anopheles gambiae refseq protein

gp/7165.9553/ 7165_wgs_contigs Anopheles gambiae wgs contigs

gp/7227.9554/ baylor_dps_wgs_contigs baylor Drosophila pseudoobscura wgs contigs

gp/7227.9554/ dm_bes drosophila melanogaster bes

gp/7227.9554/ dm_est drosophila melanogaster est

gp/7227.9554/ dm_genbank_prot drosophila melanogaster genbank protein

gp/7227.9554/ dm_genbank_rna drosophila melanogaster genbank rna

gp/7227.9554/ dm_htg drosophila melanogaster htgs

gp/7227.9554/ dm_refc drosophila melanogaster refseq contig

gp/7227.9554/ dm_refg drosophila melanogaster refseq genomic

gp/7227.9554/ dm_refh drosophila melanogaster refseq heterochromatin

gp/7227.9554/ dm_refm drosophila melanogaster refseq mrna

gp/7227.9554/ dm_refp drosophila melanogaster refseq protein

gp/7227.9554/ dm_wgs_contigs drosophila melanogaster wgs contig

gpipe/7227/ gnomon_prot Drosophila melanogaster predicted protein

gpipe/7227/ gnomon_rna Drosophila melanogaster predicted rna

gp/7227.9554/ dps_genbank_prot Drosophila pseudoobscura genbank protein

gp/7227.9554/ dsi_bes Drosophila simulans bes

gp/7227.9554/ dsi_genbank_prot Drosophila simulans genbank prot

gp/7227.9554/ dsi_wgs_contigs Drosophila simulans wgs contigs

gp/7227.9554/ dvi_genbank_prot Drosophila virilis genbank prot

gp/7227.9554/ dya_est Drosophila yakuba est

gp/7227.9554/ dya_genbank_prot Drosophila yakuba genbank prot

gp/7227.9554/ dya_genbank_rna Drosophila yakuba genbank rna

gp/7227.9554/ dya_wgs_contigs Drosophila yakuba wgs contigs

gp/7234.12695/ dp_genbank_prot Drosophila persimilis genbank prot

gp/7234.12695/ dp_wgs_contigs Drosophila persimilis wgs contigs

gp/7237.12559/ dp_est Drosophila persimilis est

gp/7237.12559/ dp_genbank_prot Drosophila persimilis genbank prot

gp/7237.12559/ dp_htg Drosophila persimilis htg

gp/7237.12559/ dp_wgs_contigs Drosophila persimilis wgs contigs

gp/7238.12709/ ds_bes Drosophila sechellia bes

gp/7238.12709/ ds_genbank_prot Drosophila sechellia genbank prot

gp/7238.12709/ ds_wgs_contigs Drosophila sechellia wgs contigs

gp/7240.12463/ ds_bes Drosophila sechellia bes

gp/7240.12463/ ds_est Drosophila sechellia est

gp/7240.12463/ ds_genbank_prot Drosophila sechellia genbank prot

gp/7240.12463/ ds_genbank_rna Drosophila sechellia genbank rna

gp/7240.12463/ ds_wgs_contigs Drosophila sechellia wgs contigs

gp/7244.12687/ dv_bes Drosophila virilis bes

gp/7244.12687/ dv_est Drosophila virilis est

gp/7244.12687/ dv_genbank_prot Drosophila virilis genbank prot

gp/7244.12687/ dv_wgs_contigs Drosophila virilis wgs contigs

gp/7245.12265/ dy_est Drosophila yakuba est

gp/7245.12265/ dy_genbank_prot Drosophila yakuba genbank prot

gp/7245.12265/ dy_genbank_rna Drosophila yakuba genbank rna

gp/7245.12265/ dy_wgs_contigs Drosophila yakuba wgs contigs

4.2 Databases for Honey Bee and Red Flour Beetle

BLAST databases for honey bee and red flour beetle are listed in this table.

Table 4.2 Databases for Honey Bee and Red Flour Beetle

DB_DIR_PREFIX DATABASE CONTENT

gp/7460.9555/ AADG_scaffolds.fa honeybee AADG scaffold

gp/7460.9555/ ame_bes honeybee bes

gp/7460.9555/ ame_est honeybee est

gp/7460.9555/ ame_genbank_prot honeybee genbank protein

gp/7460.9555/ ame_genbank_rna honeybee genbank rna

gp/7460.9555/ ame_htg honeybee htgs

gp/7460.9555/ ame_refm honeybee refseq mrna

gp/7460.9555/ ame_refp honeybee refseq protein

gp/7460.9555/ ame_wgs honeybee wgs

gpipe/7460/ all_contig honey bee all contig

gpipe/7460/ alt_contig honey bee alt contig

gpipe/7460/ gnomon_prot honey bee predicted protein

gpipe/7460/ gnomon_rna honey bee predicted rna

gpipe/7460/ ogs_prot honey bee ogs_protein

gpipe/7460/ ogs_rna honey bee ogs_rna

gpipe/7460/ protein honey bee build protein

gpipe/7460/ ref_contig honey bee refseq contig

gpipe/7460/ rna honey bee build rna

gp/7070.12539/ tc_bes red flour beetle bes

gp/7070.12539/ tc_est red flour beetle est

gp/7070.12539/ tc_genbank_prot red flour beetle genbank prot

gp/7070.12539/ tc_genbank_rna red flour beetle genbank rna

gp/7070.12539/ tc_htg red flour beetle htgs

gp/7070.12539/ tc_refm red flour beetle refseq mrna

gp/7070.12539/ tc_refp red flour beetle refseq protein

gp/7070.12539/ tc_wgs_contigs red flour beetle wgs contigs

gpipe/7070/ all_contig red flour beetle all contig

gpipe/7070/ gnomon_prot red flour beetle predicted protein

gpipe/7070/ gnomon_rna red flour beetle predicted rna

gpipe/7070/ protein red flour beetle build protein

gpipe/7070/ ref_contig red flour beetle refseq contig

gpipe/7070/ rna red flour beetle build rna

4.3 Databases for Other Invertebrates

BLAST databases for other invertebrates are listed here.

Table 4.3 Databases for Other Invertebrates

DB_DIR_PREFIX DATABASE CONTENT

gp/7668.10728/ spu_bes sea urchin bes

gp/7668.10728/ spu_est sea urchin est

gp/7668.10728/ spu_genbank_prot sea urchin genbank protein

gp/7668.10728/ spu_genbank_rna sea urchin rna

gp/7668.10728/ spu_htg sea urchin htgs

gp/7668.10728/ spu_refm sea urchin refseq mrna

gp/7668.10728/ spu_refp sea urchin refseq protein

gp/7668.10728/ spu_wgs_contigs sea urchin wgs contig

gpipe/7668/ all_contig Sea Urchin all contig

gpipe/7668/ alt_contig Sea Urchin alt contig

gpipe/7668/ gnomon_prot Sea Urchin predicted protein

gpipe/7668/ gnomon_rna Sea Urchin predicted rna

gpipe/7668/ protein Sea Urchin build protein

gpipe/7668/ ref_contig Sea Urchin refseq contig

gpipe/7668/ rna Sea Urchin build rna

gp/6239.9548/ 6239_est nematode est

gp/6239.9548/ 6239_genbank_prot nematode genbank prot

gp/6239.9548/ 6239_genbank_rna nematode genbank rna

gp/6239.9548/ 6239_htg nematode htgs

gp/6239.9548/ 6239_refg nematode refseq genomic

gp/6239.9548/ 6239_refm nematode refseq mrna

gp/6239.9548/ 6239_refp nematode refseq protein

gpipe/6239/ gnomon_prot nematode predicted protein

gpipe/6239/ gnomon_rna nematode predicted rna

5. Databases for Protozoas

BLAST databases for protozoas are listed here. They are broken down into Plasmodium specific table and a table for other pathogenic protozoas.

5.1 Databases for Various Plasmodia

Databases for various Plasmodia are listed in this table.

Table 5.1 Databases for Plasmodium

DB_DIR_PREFIX DATABASE CONTENT

gp/5825.9537/ pcc_genbank_prot Plasmodium chabaudi chabaudi genbank prot

gp/5825.9537/ pcc_refm Plasmodium chabaudi chabaudi refseq mrna

gp/5825.9537/ pcc_refp Plasmodium chabaudi chabaudi refseq protein

gp/5825.9537/ pcc_wgs_contigs Plasmodium chabaudi chabaudi wgs contigs

gp/5833.9538/ 5833_est Plasmodium falciparum est

gp/5833.9538/ 5833_genbank_prot Plasmodium falciparum genbank prot

gp/5833.9538/ 5833_genbank_rna Plasmodium falciparum genbank rna

gp/5833.9538/ 5833_htg Plasmodium falciparum htg

gp/5833.9538/ 5833_refg Plasmodium falciparum refseq genomic

gp/5833.9538/ 5833_refm Plasmodium falciparum refseq mrna

gp/5833.9538/ 5833_refp Plasmodium falciparum refseq protein

gp/5833.9538/ 5833_wgs_contigs Plasmodium falciparum wgs contigs

gp/5861.9586/ pyoy_est Plasmodium yoelii yoelii est

gp/5861.9586/ pyoy_genbank_prot Plasmodium yoelii yoelii genbank prot

gp/5861.9586/ pyoy_genbank_rna Plasmodium yoelii yoelii genbank rna

gp/5861.9586/ pyoy_refm Plasmodium yoelii yoelii refseq mrna

gp/5861.9586/ pyoy_refp Plasmodium yoelii yoelii refseq protein

gp/5861.9586/ pyoy_wgs_contigs Plasmodium yoelii yoelii wgs contigs

5.2 Databases for Other Pathogenic Protozoa

Databases for other pathogenic protozoas are listed in this table.

Table 5.2 Databases for Other Pathogenic Protozoas

DB_DIR_PREFIX DATABASE CONTENT

gp/5807.9534/ 5807_bes Cryptosporidium parvum bes

gp/5807.9534/ 5807_est Cryptosporidium parvum est

gp/5807.9534/ 5807_genbank_prot Cryptosporidium parvum genbank prot

gp/5807.9534/ 5807_refg Cryptosporidium parvum refseq genomic

gp/5807.9534/ 5807_refm Cryptosporidium parvum refseq mrna

gp/5807.9534/ 5807_refp Cryptosporidium parvum refseq protein

gp/5807.9534/ 5807_wgs_contigs Cryptosporidium parvum wgs contigs

gp/44689.9565/ 44689_est Dictyostelium discoideum est

gp/44689.9565/ 44689_genbank_prot Dictyostelium discoideum genbank protein

gp/44689.9565/ 44689_genbank_rna Dictyostelium discoideum genbank rna

gp/44689.9565/ 44689_htg Dictyostelium discoideum htgs

gp/44689.9565/ 44689_refg Dictyostelium discoideum refseq genomic

gp/44689.9565/ 44689_refm Dictyostelium discoideum refseq mrna

gp/44689.9565/ 44689_refp Dictyostelium discoideum refseq protein

gp/44689.9565/ 44689_wgs_contigs Dictyostelium discoideumwgs wgs contigs

gp/6035.9545/ 6035_genbank_prot Encephalitozoon cuniculi genbank protein

gp/6035.9545/ 6035_refg Encephalitozoon cuniculi refseq genomic

gp/6035.9545/ 6035_refm Encephalitozoon cuniculi refseq mrna

gp/6035.9545/ 6035_refp Encephalitozoon cuniculi refseq protein

gp/33169.10630/ 33169_genbank_prot Eremothecium gossypii genbank protein

gp/33169.10630/ 33169_refg Eremothecium gossypii refseq genomic

gp/33169.10630/ 33169_refm Eremothecium gossypii refseq rna

gp/33169.10630/ 33169_refp Eremothecium gossypii refseq protein

gp/5875.9544/ 333668_refg Theileria parva strain Muguga refseq genomic

gp/5875.9544/ tpam_est Theileria parva strain Muguga est

gp/5875.9544/ tpam_est_est_others Theileria parva strain Muguga est est others

gp/5875.9544/ tpam_genbank_prot Theileria parva strain Muguga genbank prot

gp/5875.9544/ tpam_refg Theileria parva strain Muguga refseq genomic

gp/5875.9544/ tpam_refm Theileria parva strain Muguga refseq mrna

gp/5875.9544/ tpam_refp Theileria parva strain Muguga refseq protein

gp/5875.9544/ tpam_wgs_contigs Theileria parva strain Muguga wgs contigs

gp/333668.9544/ 333668_refg Theileria parva refseq genomic

gp/333668.9544/ tpam_refm Theileria parva refseq mrna

gp/333668.9544/ tpam_refp Theileria parva refseq protein

gp/185431.9529/ 185431_refg Trypanosoma brucei TREU927 refseq genomic

gp/185431.9529/ tbrt_refm Trypanosoma brucei TREU927 refseq mrna

gp/185431.9529/ tbrt_refp Trypanosoma brucei TREU927 refseq protein

gp/5691.9529/ 185431_refg Trypanosoma brucei refseq genomic

gp/5691.9529/ 185431_refg_other_genomic Trypanosoma brucei refseq genomic other genomic

gp/5691.9529/ tbrt_bes Trypanosoma brucei bes

gp/5691.9529/ tbrt_est Trypanosoma brucei est

gp/5691.9529/ tbrt_genbank_prot Trypanosoma brucei genbank prot

gp/5691.9529/ tbrt_genbank_rna Trypanosoma brucei genbank rna

gp/5691.9529/ tbrt_htg Trypanosoma brucei htg

gp/5691.9529/ tbrt_refm Trypanosoma brucei refseq mrna

gp/5691.9529/ tbrt_refp Trypanosoma brucei refseq protein

gp/5691.9529/ tbrt_wgs_contigs Trypanosoma brucei wgs contigs

6. Databases for Plants and Fungi

Databases for various plants and fungi are listed here.

6.1 Databases for Grains

Databases for various agriculcurally important grains are listed in this table.

Table 5.1 Databases for Grains

DB_DIR_PREFIX DATABASE CONTENT

gp/4498.9510/ 4498_est Avena sativa est

gp/4498.9510/ 4498_genbank_prot Avena sativa genbank protein

gp/4498.9510/ 4498_genbank_rna Avena sativa genbank rna

gp/3847.9507/ 3847_bes Glycine max bes

gp/3847.9507/ 3847_est Glycine max est

gp/3847.9507/ 3847_genbank_prot Glycine max genbank protein

gp/3847.9507/ 3847_genbank_rna Glycine max genbank rna

gp/3847.9507/ 3847_htg Glycine max htgs

gp/3847.9507/ 3847_refg Glycine max refseq genomic

gp/3847.9507/ 3847_refp Glycine max refseq protein

gp/4513.9511/ 4513_est Hordeum vulgare est

gp/4513.9511/ 4513_genbank_prot Hordeum vulgare genbank protein

gp/4513.9511/ 4513_genbank_rna Hordeum vulgare genbank rna

gp/4530.9512/ 39946_bes Oryza sativa (indica cultivar) bes

gp/4530.9512/ 39946_est Oryza sativa (indica cultivar) est

gp/4530.9512/ 39946_htg Oryza sativa (indica cultivar) htgs

gp/4530.9512/ 39946_wgs_contigs Oryza sativa (indica cultivar) wgs contigs

gp/4530.9512/ 4530_bes Oryza sativa bes

gp/4530.9512/ 4530_est Oryza sativa est

gp/4530.9512/ 4530_genbank_prot Oryza sativa genbank protein

gp/4530.9512/ 4530_genbank_rna Oryza sativa genbank rna

gp/4530.9512/ 4530_htg Oryza sativa htgs

gp/4530.9512/ 4530_refg Oryza sativa refseq genomic

gp/4530.9512/ 4530_refm Oryza sativa refseq mrna

gp/4530.9512/ 4530_refp Oryza sativa refseq protein

gp/4530.9512/ 4530_wgs_contigs Oryza sativa wgs contigs

gp/4530.9512/ osa_bes Oryza sativa bes

gp/4530.9512/ osa_est Oryza sativa est

gp/4530.9512/ osa_genbank_prot Oryza sativa genbank protein

gp/4530.9512/ osa_refp Oryza sativa refseq protein

gp/4530.9512/ osac_bes Oryza sativa (japonica cultivar) bes

gp/4530.9512/ osac_est Oryza sativa (japonica cultivar) est

gp/4530.9512/ osac_genbank_prot Oryza sativa (japonica cultivar) genbank protein

gp/4530.9512/ osac_genbank_rna Oryza sativa (japonica cultivar) genbank rna

gp/4530.9512/ osac_htg Oryza sativa (japonica cultivar) htgs

gp/4530.9512/ osac_refg Oryza sativa (japonica cultivar) refseq genomic

gp/4530.9512/ osac_refm Oryza sativa (japonica cultivar) refseq mrna

gp/4530.9512/ osac_refp Oryza sativa (japonica cultivar) refseq protein

gp/4530.9512/ osac_wgs_contigs Oryza sativa (japonica cultivar) wgs contigs

gp/4558.10785/ 4558_est Sorghum bicolor est

gp/4558.10785/ 4558_genbank_prot Sorghum bicolor genbank protein

gp/4558.10785/ 4558_genbank_rna Sorghum bicolor genbank rna

gp/4558.10785/ 4558_htg Sorghum bicolor htgs

gp/4558.10785/ 4558_refg Sorghum bicolor refseq genomic

gp/4565.9513/ 4565_bes Triticum aestivum bes

gp/4565.9513/ 4565_est Triticum aestivum est

gp/4565.9513/ 4565_genbank_prot Triticum aestivum genbank protein

gp/4565.9513/ 4565_genbank_rna Triticum aestivum genbank rna

gp/4565.9513/ 4565_htg Triticum aestivum htgs

gp/4565.9513/ 4565_refg Triticum aestivum refseq genomic

gp/4565.9513/ 4565_refp Triticum aestivum refseq protein

gp/4577.9514/ 381124_bes Zea mays subsp. mays bes

gp/4577.9514/ 381124_est Zea mays subsp. mays est

gp/4577.9514/ 381124_genbank_prot Zea mays subsp. mays genbank protein

gp/4577.9514/ 381124_genbank_rna Zea mays subsp. mays genbank rna

gp/4577.9514/ 381124_htg Zea mays subsp. mays htgs

gp/4577.9514/ 381124_refg Zea mays subsp. mays refseq genomic

gp/4577.9514/ 381124_refp Zea mays subsp. mays refseq protein

gp/381124.9514/ 381124_bes Zea mays subsp. mays bes

gp/381124.9514/ 381124_genbank_prot Zea mays subsp. mays genbank protein

gp/381124.9514/ 381124_refg Zea mays subsp. mays refseq genomic

gp/381124.9514/ 381124_refp Zea mays subsp. mays refseq protein

6.2 Databases for Other Plants

Databases for variety of other non-grain plants are listed in this table.

Table 6.2 Databases for Other Plants

DB_DIR_PREFIX DATABASE CONTENT

gp/3702.9506/ at_bes arabidopsis bes

gp/3702.9506/ at_est arabidopsis est

gp/3702.9506/ at_genbank_prot arabidopsis genbank protein

gp/3702.9506/ at_genbank_rna arabidopsis genbank rna

gp/3702.9506/ at_htg arabidopsis htgs

gp/3702.9506/ at_refg arabidopsis refseq genomic

gp/3702.9506/ at_refm arabidopsis refseq mrna

gp/3702.9506/ at_refp arabidopsis refseq protein

gp/4686.16855/ 4686_est Asparagus officinalis est

gp/4686.16855/ 4686_est_est_others Asparagus officinalis est estothers

gp/4686.16855/ 4686_genbank_prot Asparagus officinalis genbank protein

gp/4679.12548/ 4679_est Allium cepa est

gp/4679.12548/ 4679_genbank_prot Allium cepa genbank protein

gp/4679.12548/ 4679_genbank_rna Allium cepa genbank rna

gp/161934.12562/ 161934_est beet est

gp/161934.12562/ 161934_genbank_prot beet genbank protein

gp/161934.12562/ 161934_genbank_rna beet genbank rna

gp/161934.12562/ 161934_refg beet refseq genomic

gp/161934.12562/ 161934_refp beet refseq protein

gp/161934.12562/ 3555_est beet (subsp vulgaris) est

gp/161934.12562/ 3555_genbank_prot beet (subsp vulgaris) genbank protein

gp/161934.12562/ 3555_genbank_rna beet (subsp vulgaris) genbank rna

gp/161934.12562/ 3555_refg beet (subsp vulgaris) refseq genomic

gp/161934.12562/ 3555_refp beet (subsp vulgaris) refseq protein

gp/3711.12578/ br_bes Brassica rapa bes

gp/3711.12578/ br_est Brassica rapa est

gp/3711.12578/ br_genbank_prot Brassica rapa genbank protein

gp/3711.12578/ br_genbank_rna Brassica rapa genbank rna

gp/3711.12578/ br_htg Brassica rapa htgs

gp/3712.12577/ 3712_est Brassica oleracea est

gp/3712.12577/ 3712_genbank_prot Brassica oleracea genbank protein

gp/3712.12577/ 3712_genbank_rna Brassica oleracea genbank rna

gp/34305.10747/ lj_bes Lotus japonicus bes

gp/34305.10747/ lj_est Lotus japonicus est

gp/34305.10747/ lj_genbank_prot Lotus japonicus genbank protein

gp/34305.10747/ lj_genbank_rna Lotus japonicus genbank rna

gp/34305.10747/ lj_htg Lotus japonicus htgs

gp/34305.10747/ lj_refg Lotus japonicus refseq genomic

gp/34305.10747/ lj_refp Lotus japonicus refseq protein

gp/3879.13214/ 3879_est Medicago sativa est

gp/3879.13214/ 3879_genbank_prot Medicago sativa genbank protein

gp/3879.13214/ 3879_genbank_rna Medicago sativa genbank rna

gp/3880.9508/ 3880_bes Medicago truncatula bes

gp/3880.9508/ 3880_est Medicago truncatula est

gp/3880.9508/ 3880_genbank_prot Medicago truncatula genbank protein

gp/3880.9508/ 3880_genbank_rna Medicago truncatula genbank rna

gp/3880.9508/ 3880_htg Medicago truncatula htgs

gp/3880.9508/ 3880_refg Medicago truncatula refseq genomic

gp/3983.13628/ me_bes Manihot esculenta bes

gp/3983.13628/ me_est Manihot esculenta est

gp/3983.13628/ me_genbank_prot Manihot esculenta genbank protein

gp/3983.13628/ me_genbank_rna Manihot esculenta genbank rna

gp/4097.13234/ 4097_est Nicotiana tabacum est

gp/4097.13234/ 4097_genbank_prot Nicotiana tabacum genbank protein

gp/4097.13234/ 4097_genbank_rna Nicotiana tabacum genbank rna

gp/4097.13234/ 4097_refg Nicotiana tabacum refseq genomic

gp/4097.13234/ 4097_refp Nicotiana tabacum refseq protein

gp/4081.9509/ 4081_bes Solanum lycopersicum bes

gp/4081.9509/ 4081_est Solanum lycopersicum est

gp/4081.9509/ 4081_genbank_prot Solanum lycopersicum genbank protein

gp/4081.9509/ 4081_genbank_rna Solanum lycopersicum genbank rna

gp/4081.9509/ 4081_htg Solanum lycopersicum htgs

gp/4081.9509/ 4081_refg Solanum lycopersicum refseq genomic

gp/4081.9509/ 4081_refp Solanum lycopersicum refseq protein

gp/4113.12984/ 4113_bes Solanum tuberosum bes

gp/4113.12984/ 4113_est Solanum tuberosum est

gp/4113.12984/ 4113_genbank_prot Solanum tuberosum genbank protein

gp/4113.12984/ 4113_genbank_rna Solanum tuberosum genbank rna

gp/4113.12984/ 4113_refg Solanum tuberosum refseq genomic

gp/4113.12984/ 4113_refp Solanum tuberosum refseq protein

gp/88036.13079/ 88036_est Selaginella moellendorffii est

gp/88036.13079/ 88036_htg Selaginella moellendorffii htg

gp/3694.10770/ 3694_est Populus trichocarpa est

gp/3694.10770/ 3694_genbank_prot Populus trichocarpa genbank protein

gp/3694.10770/ 3694_genbank_rna Populus trichocarpa genbank rna

gp/3694.10770/ 3694_htg Populus trichocarpa htgs

gp/3694.10770/ 3694_refg Populus trichocarpa refseq genomic

gp/3694.10770/ 3694_wgs_contigs Populus trichocarpa wgs contigs

gp/29760.12992/ 29760_bes Vitis vinifera bes

gp/29760.12992/ 29760_est Vitis vinifera est

gp/29760.12992/ 29760_genbank_prot Vitis vinifera genbank protein

gp/29760.12992/ 29760_genbank_rna Vitis vinifera genbank rna

gp/29760.12992/ 29760_refg Vitis vinifera refseq genomic

gp/29760.12992/ 29760_refp Vitis vinifera refseq protein

6.3 Databases for Various Fungi

Databases for various fungi are divided into several categories: non-pathogenic, human pathogenic, and plant pathogenic.

6.3.1 Databases for Non-Pathogenic Fungi

This group includes baker yeast, fission yeast, and other non-pathogenic fungi.

Table 6.3.1 Databases for Non-Pathogenic Fungi

DB_DIR_PREFIX DATABASE CONTENT

gp/4896.9517/ 4896_est Schizosaccharomyces pombe est

gp/4896.9517/ 4896_genbank_prot Schizosaccharomyces pombe genbank protein

gp/4896.9517/ 4896_genbank_rna Schizosaccharomyces pombe genbank rna

gp/4896.9517/ 4896_refg Schizosaccharomyces pombe refseq genomic

gp/4896.9517/ 4896_refm Schizosaccharomyces pombe refseq mrna

gp/4896.9517/ 4896_refp Schizosaccharomyces pombe refseq protein

gp/4932.9518/ AAEG_contigs Saccharomyces cerevisiae AAEG wgs contigs

gp/4932.9518/ AAEG_scaffolds.fa Saccharomyces cerevisiae AAEGscaffolds

gp/4932.9518/ AAFW_contigs Saccharomyces cerevisiae AAFW wgs contigs

gp/4932.9518/ sce_est Saccharomyces cerevisiae est

gp/4932.9518/ sce_genbank_prot Saccharomyces cerevisiae genbank protein

gp/4932.9518/ sce_genbank_rna Saccharomyces cerevisiae genbank rna

gp/4932.9518/ sce_refg Saccharomyces cerevisiae refseq genomic

gp/4932.9518/ sce_refp Saccharomyces cerevisiae refseq protein

gp/4932.9518/ wgs_contigs Saccharomyces cerevisiae all wgs contigs

gp/5141.9522/ 5141_est Neurospora crassa est

gp/5141.9522/ 5141_genbank_prot Neurospora crassa genbank prot

gp/5141.9522/ 5141_genbank_rna Neurospora crassa genbank rna

gp/5141.9522/ 5141_refg Neurospora crassa refseq genomic

gp/5141.9522/ 5141_refm Neurospora crassa refseq mrna

gp/5141.9522/ 5141_refp Neurospora crassa refseq protein

gp/5141.9522/ 5141_wgs_contigs Neurospora crassa wgs contigs

gp/4952.12364/ 4952_genbank_prot Yarrowia lipolytica genbank protein

gp/4952.12364/ 4952_refg Yarrowia lipolytica refseq genomic

gp/4952.12364/ 4952_refm Yarrowia lipolytica refseq mrna

gp/4952.12364/ 4952_refp Yarrowia lipolytica refseq protein

gp/4959.12365/ 4959_genbank_prot Debaryomyces hansenii genbank protein

gp/4959.12365/ 4959_refg Debaryomyces hansenii refseq genomic

gp/4959.12365/ 4959_refm Debaryomyces hansenii refseq mrna

gp/4959.12365/ 4959_refp Debaryomyces hansenii refseq protein

6.3.2 Databases for Human Pathogenic Fungi

Databases for human pathogenic fungi are listed here.

Table 6.3.2 Databases for Human Pathogenic Fungi

DB_DIR_PREFIX DATABASE CONTENT

gp/5085.9521/ 5085_est Aspergillus fumigatus est

gp/5085.9521/ 5085_genbank_prot Aspergillus fumigatus genbank prot

gp/5085.9521/ 5085_genbank_rna Aspergillus fumigatus genbank rna

gp/5085.9521/ 5085_refg Aspergillus fumigatus refseq genomic

gp/5085.9521/ 5085_refm Aspergillus fumigatus refseq mrna

gp/5085.9521/ 5085_refp Aspergillus fumigatus refseq protein

gp/5085.9521/ 5085_wgs_contigs Aspergillus fumigatus wgs contigs

gp/5476.9526/ cal_est Candida albicans est

gp/5476.9526/ cal_genbank_prot Candida albicans genbank prot

gp/5476.9526/ cal_genbank_rna Candida albicans genbank rna

gp/5476.9526/ cal_refm Candida albicans refseq mrna

gp/5476.9526/ cal_refp Candida albicans refseq protein

gp/5476.9526/ cal_wgs_contigs Candida albicans wgs contigs

gp/5478.12362/ 5478_genbank_prot Candida glabrata genbank prot

gp/5478.12362/ 5478_refg Candida glabrata refseq genomic

gp/5478.12362/ 5478_refm Candida glabrata refseq mrna

gp/5478.12362/ 5478_refp Candida glabrata refseq protein

gp/5478.12362/ cglc_genbank_prot Candida glabrata genbank prot

gp/5478.12362/ cglc_refm Candida glabrata refseq mrna

gp/5478.12362/ cglc_refp Candida glabrata refseq protein

6.3.3 Databases for Plant Pathogenic Fungi

Databases for plant pathogenic fungi are listed here.

Table 6.3.3 Databases for Plant Pathogenic Fungi

DB_DIR_PREFIX DATABASE CONTENT

gp/5207.9581/ 5207_est Filobasidiella neoformans est

gp/5207.9581/ 5207_genbank_prot Filobasidiella neoformans genbank prot

gp/5207.9581/ 5207_genbank_rna Filobasidiella neoformans genbank rna

gp/5207.9581/ 5207_refg Filobasidiella neoformans refseq genomic

gp/5207.9581/ 5207_refm Filobasidiella neoformans refseq mrna

gp/5207.9581/ 5207_refp Filobasidiella neoformans refseq protein

gp/5207.9581/ 5207_wgs_contigs Filobasidiella neoformans wgs contigs

gp/5270.9595/ 5270_est Ustilago maydis est

gp/5270.9595/ 5270_genbank_prot Ustilago maydis genbank prot

gp/5270.9595/ 5270_refg Ustilago maydis refseq genomic

gp/5270.9595/ 5270_refm Ustilago maydis refseq mrna

gp/5270.9595/ 5270_refp Ustilago maydis refseq protein

gp/5270.9595/ 5270_wgs_contigs Ustilago maydis wgs contigs

gp/5518.9568/ 5518_est Gibberella zeae est

gp/5518.9568/ 5518_genbank_prot Gibberella zeae genbank prot

gp/5518.9568/ 5518_genbank_rna Gibberella zeae genbank rna

gp/5518.9568/ 5518_refg Gibberella zeae refseq genomic

gp/5518.9568/ 5518_refm Gibberella zeae refseq mrna

gp/5518.9568/ 5518_refp Gibberella zeae refseq protein

gp/5518.9568/ 5518_wgs_contigs Gibberella zeae wgs contigs

gp/148305.9583/ 148305_bes rice blast fungus bes

gp/148305.9583/ 148305_est rice blast fungus est

gp/148305.9583/ 148305_genbank_prot rice blast fungus genbank protein

gp/148305.9583/ 148305_genbank_rna rice blast fungus genbank rna

gp/148305.9583/ 148305_htg rice blast fungus htgs

gp/148305.9583/ 148305_refg rice blast fungus refseq genomic

gp/148305.9583/ 148305_refm rice blast fungus refseq mrna

gp/148305.9583/ 148305_refp rice blast fungus refseq protein

gp/148305.9583/ 148305_wgs_contigs rice blast fungus wgs contigs

7. Databases under Genomes and Microbial Directories

Databases under these two directories are those accessible from the "Microbial Genomes", "Other Eukaryotes", and "Plants" BLAST pages.

7.1 Databases under Genomes Directory

These databases are mostly for various plants and a few non-plant model organisms. The content may overplap with other plant or organism specific databases mentioned in previous sections.

Table 7.1 Databases Under Genomes Directory

DATABASE Organism Name CONTENT¹

genomes 110835 Eragrostis tef est

genomes 112509 Hordeum vulgare subsp. vulgare est

genomes 161934 Beta vulgaris est

genomes 2711 Citrus sinensis est

genomes 29730 Gossypium raimondii est

genomes 29760 Vitis vinifera est

genomes 3330 Picea glauca est

genomes 3332 Picea sitchensis est

genomes 3352 Pinus taeda est

genomes 338618 Aquilegia formosa x Aquilegia pubescens est

genomes 34305 Lotus japonicus est

genomes 3635 Gossypium hirsutum est

genomes 3694 Populus trichocarpa est

genomes 3695 Populus trichocarpa x Populus deltoides est

genomes 3702 Arabidopsis thaliana est

genomes 3708 Brassica napus est

genomes 3750 Malus x domestica est

genomes 3760 Prunus persica est

genomes 3847 Glycine max est

genomes 3880 Medicago truncatula est

genomes 3983 Manihot esculenta est

genomes 4081 Solanum lycopersicum est

genomes 4113 Solanum tuberosum est

genomes 4232 Helianthus annuus est

genomes 4236 Lactuca sativa est

genomes 4513 Hordeum vulgare est

genomes 4530 Oryza sativa est

genomes 4546 Saccharum est

genomes 4550 Secale cereale est

genomes 4558 Sorghum bicolor est

genomes 4565 Triticum aestivum est

genomes 4577 Zea mays est

genomes 4679 Allium cepa est

genomes 47664 Populus tremula x Populus tremuloides est

genomes 75943 Lactuca serriolaest

genomes 85681 Citrus clementina est

genomes Giardia Giardia

genomes ara arabidopsis protein

genomes ara_chr arabidopsis chr

genomes barley barley

genomes beet beet

genomes c_briggsae c_briggsae wgs

genomes c_elegans c_elegans mRNA

genomes c_elegans_chr c_elegans chr

genomes cionaWGS Ciona intestinalis WGS

genomes corn corn

genomes lotus lotus

genomes oat oat

genomes plant plant

genomes prok prokaryotic protein

genomes rice rice protein

genomes riceIndicaWGS riceIndicaWGS

genomes riceJaponicaWGS riceJaponicaWGS

genomes rice_mrna rice_mrna

genomes soybean soybean

genomes tomato tomato

genomes wheat wheat

Note:
¹ The databases named with taxids are mostly plant est databases. Most of the databases are nucleotide unless specified otherwise.

7.2 Databases under Microbial Directory

The databases here are those accessible from the "Microbial Genomes" BLAST pages. They are named with the organism's taxonomy id. The DB_DIR_PREFIX column is merged with the DATABASE column. To call a database, use the text string in the DATABASE column. The database type is indicated by the 2nd column. The database content is described in the 3rd column.

For example, we can use the following ways to search against E.coli protein database:

blastcl3 -p blastp -d Microbial/562 -i ...
...&PROGRAM=blastp&DATABASE=Microbial/562&QUEYR=...

Note that we can use blastp to search against the protein dataset since the database type column this group of organisms has "T".

NOTE that the sequences for different strains of the same organism were consolidiated (early December, 08) to reduce the nubmer of databases BLAST server has to process during the search and list in the result page.

Table 7.2 Databases for Microorganisms

DB name Protein Content

Microbial/100226 F Completed Streptomyces coelicolor A3(2)

Microbial/100226 T Completed Streptomyces coelicolor A3(2) proteins

Microbial/101510 F Completed Rhodococcus sp. RHA1

Microbial/101510 T Completed Rhodococcus sp. RHA1 proteins

Microbial/103690 F Completed Nostoc sp. PCC 7120

Microbial/103690 T Completed Nostoc sp. PCC 7120 proteins

Microbial/1063 F Completed Rhodobacter sphaeroides

Microbial/1063 T Completed Rhodobacter sphaeroides proteins

Microbial/106370 F Completed Frankia sp. CcI3

Microbial/106370 T Completed Frankia sp. CcI3 proteins

Microbial/1076 F Completed Rhodopseudomonas palustris

Microbial/1076 T Completed Rhodopseudomonas palustris proteins

Microbial/1096 F Completed Chlorobium phaeobacteroides

Microbial/1096 T Completed Chlorobium phaeobacteroides proteins

Microbial/110662 F Completed Synechococcus sp. CC9605

Microbial/110662 T Completed Synechococcus sp. CC9605 proteins

Microbial/114615 F Completed Bradyrhizobium sp. ORS278

Microbial/114615 T Completed Bradyrhizobium sp. ORS278 proteins

Microbial/1148 F Completed Synechocystis sp. PCC 6803

Microbial/1148 T Completed Synechocystis sp. PCC 6803 proteins

Microbial/118168 F Unfinished Microcoleus chthonoplastes PCC 7420

Microbial/121723 F Unfinished Photobacterium sp. SKA34

Microbial/121723 T Unfinished Photobacterium sp. SKA34 proteins

Microbial/1219 F Completed Prochlorococcus marinus

Microbial/1219 T Completed Prochlorococcus marinus proteins

Microbial/1229 F Nitrosococcus oceani genomic sequences

Microbial/1229 T Completed Nitrosococcus oceani proteins

Microbial/1247 F Oenococcus oeni genomic sequences

Microbial/1247 T Completed Oenococcus oeni proteins

Microbial/126740 F Completed Thermotoga sp. RQ2

Microbial/126740 T Completed Thermotoga sp. RQ2 proteins

Microbial/1280 F Staphylococcus aureus genomic sequences

Microbial/1280 T Completed Staphylococcus aureus proteins

Microbial/1282 F Completed Staphylococcus epidermidis

Microbial/1282 T Completed Staphylococcus epidermidis proteins

Microbial/1307 F Streptococcus suis genomic sequences

Microbial/1307 T Completed Streptococcus suis proteins

Microbial/1308 F Completed Streptococcus thermophilus

Microbial/1308 T Completed Streptococcus thermophilus proteins

Microbial/1311 F Streptococcus agalactiae genomic sequences

Microbial/1311 T Completed Streptococcus agalactiae proteins

Microbial/1313 F Streptococcus pneumoniae genomic sequences

Microbial/1313 T Completed Streptococcus pneumoniae proteins

Microbial/1314 F Streptococcus pyogenes genomic sequences

Microbial/1314 T Completed Streptococcus pyogenes proteins

Microbial/13373 F Burkholderia mallei genomic sequences

Microbial/13373 T Completed Burkholderia mallei proteins

Microbial/134821 F Ureaplasma parvum genomic sequences

Microbial/134821 T Completed Ureaplasma parvum proteins

Microbial/1351 F Enterococcus faecalis genomic sequences

Microbial/1351 T Completed Enterococcus faecalis proteins

Microbial/1358 F Completed Lactococcus lactis

Microbial/1358 T Completed Lactococcus lactis proteins

Microbial/139 F Borrelia burgdorferi genomic sequences

Microbial/139 T Completed Borrelia burgdorferi proteins

Microbial/1392 F Bacillus anthracis genomic sequences

Microbial/1392 T Completed Bacillus anthracis proteins

Microbial/1396 F Bacillus cereus genomic sequences

Microbial/1396 T Completed Bacillus cereus proteins

Microbial/1408 F Bacillus pumilus genomic sequences

Microbial/1408 T Completed Bacillus pumilus proteins

Microbial/1423 F Bacillus subtilis genomic sequences

Microbial/1423 T Completed Bacillus subtilis proteins

Microbial/1428 F Bacillus thuringiensis genomic sequences

Microbial/1428 T Completed Bacillus thuringiensis proteins

Microbial/1491 F Clostridium botulinum genomic sequences

Microbial/1491 T Completed Clostridium botulinum proteins

Microbial/1496 F Clostridium difficile genomic sequences

Microbial/1496 T Completed Clostridium difficile proteins

Microbial/1502 F Clostridium perfringens genomic sequences

Microbial/1502 T Completed Clostridium perfringens proteins

Microbial/150340 F Unfinished Vibrio sp. Ex25

Microbial/1515 F Clostridium thermocellum genomic sequences

Microbial/1515 T Completed Clostridium thermocellum proteins

Microbial/152480 F Burkholderia ambifaria genomic sequences

Microbial/152480 T Completed Burkholderia ambifaria proteins

Microbial/156578 F Unfinished Alteromonadales bacterium TW-7

Microbial/156578 T Unfinished Alteromonadales bacterium TW-7 proteins

Microbial/156586 F Unfinished Flavobacteria bacterium BBFL7

Microbial/156586 T Unfinished Flavobacteria bacterium BBFL7 proteins

Microbial/156889 F Completed Magnetococcus sp. MC-1

Microbial/156889 T Completed Magnetococcus sp. MC-1 proteins

Microbial/1582 F Completed Lactobacillus casei

Microbial/1582 T Completed Lactobacillus casei proteins

Microbial/1584 F Completed Lactobacillus delbrueckii

Microbial/1584 T Completed Lactobacillus delbrueckii proteins

Microbial/159087 F Completed Dechloromonas aromatica RCB

Microbial/159087 T Completed Dechloromonas aromatica RCB proteins

Microbial/1596 F Lactobacillus gasseri genomic sequences

Microbial/1596 T Completed Lactobacillus gasseri proteins

Microbial/1598 F Lactobacillus reuteri genomic sequences

Microbial/1598 T Completed Lactobacillus reuteri proteins

Microbial/160 F Completed Treponema pallidum

Microbial/160 T Completed Treponema pallidum proteins

Microbial/161493 F Anaeromyxobacter dehalogenans genomic sequences

Microbial/161493 T Completed Anaeromyxobacter dehalogenans proteins

Microbial/161528 F Unfinished Erythrobacter sp. SD-21

Microbial/161528 T Unfinished Erythrobacter sp. SD-21 proteins

Microbial/161544 F Unfinished Bacillus sp. SG-1

Microbial/161544 T Unfinished Bacillus sp. SG-1 proteins

Microbial/163164 F Completed Wolbachia endosymbiont of Drosophila melanogaster

Microbial/163164 T Completed Wolbachia endosymbiont of Drosophila melanogaster proteins

Microbial/1639 F Listeria monocytogenes genomic sequences

Microbial/1639 T Completed Listeria monocytogenes proteins

Microbial/164546 F Completed Cupriavidus taiwanensis

Microbial/164546 T Completed Cupriavidus taiwanensis proteins

Microbial/164756 F Completed Mycobacterium sp. MCS

Microbial/164756 T Completed Mycobacterium sp. MCS proteins

Microbial/164757 F Completed Mycobacterium sp. JLS

Microbial/164757 T Completed Mycobacterium sp. JLS proteins

Microbial/165597 F Unfinished Crocosphaera watsonii WH 8501

Microbial/165597 T Unfinished Crocosphaera watsonii WH 8501 proteins

Microbial/167879 F Completed Colwellia psychrerythraea 34H

Microbial/167879 T Completed Colwellia psychrerythraea 34H proteins

Microbial/1680 F Bifidobacterium adolescentis genomic sequences

Microbial/1680 T Completed Bifidobacterium adolescentis proteins

Microbial/1718 F Completed Corynebacterium glutamicum

Microbial/1718 T Completed Corynebacterium glutamicum proteins

Microbial/172 F Completed Leptospira biflexa

Microbial/172 T Completed Leptospira biflexa proteins

Microbial/173 F Completed Leptospira interrogans

Microbial/173 T Completed Leptospira interrogans proteins

Microbial/174 F Completed Leptospira borgpetersenii

Microbial/174 T Completed Leptospira borgpetersenii proteins

Microbial/1747 F Propionibacterium acnes genomic sequences

Microbial/1747 T Completed Propionibacterium acnes proteins

Microbial/176299 F Completed Agrobacterium tumefaciens str. C58

Microbial/176299 T Completed Agrobacterium tumefaciens str. C58 proteins

Microbial/1764 F Completed Mycobacterium avium

Microbial/1764 T Completed Mycobacterium avium proteins

Microbial/1765 F Completed Mycobacterium bovis

Microbial/1765 T Completed Mycobacterium bovis proteins

Microbial/1773 F Mycobacterium tuberculosis genomic sequences

Microbial/1773 T Completed Mycobacterium tuberculosis proteins

Microbial/177439 F Completed Desulfotalea psychrophila LSv54

Microbial/177439 T Completed Desulfotalea psychrophila LSv54 proteins

Microbial/178306 F Completed Pyrobaculum aerophilum str. IM2

Microbial/178306 T Completed Pyrobaculum aerophilum str. IM2 proteins

Microbial/180281 F Unfinished Cyanobium sp. PCC 7001

Microbial/186497 F Completed Pyrococcus furiosus DSM 3638

Microbial/186497 T Completed Pyrococcus furiosus DSM 3638 proteins

Microbial/187272 F Completed Alkalilimnicola ehrlichei MLHE-1

Microbial/187272 T Completed Alkalilimnicola ehrlichei MLHE-1 proteins

Microbial/187420 F Completed Methanothermobacter thermautotrophicus str. Delta H

Microbial/187420 T Completed Methanothermobacter thermautotrophicus str. Delta H proteins

Microbial/188937 F Completed Methanosarcina acetivorans C2A

Microbial/188937 T Completed Methanosarcina acetivorans C2A proteins

Microbial/189918 F Completed Mycobacterium sp. KMS

Microbial/189918 T Completed Mycobacterium sp. KMS proteins

Microbial/190192 F Completed Methanopyrus kandleri AV19

Microbial/190192 T Completed Methanopyrus kandleri AV19 proteins

Microbial/190486 F Completed Xanthomonas axonopodis pv. citri str. 306

Microbial/190486 T Completed Xanthomonas axonopodis pv. citri str. 306 proteins

Microbial/190650 F Completed Caulobacter crescentus CB15

Microbial/190650 T Completed Caulobacter crescentus CB15 proteins

Microbial/192952 F Completed Methanosarcina mazei Go1

Microbial/192952 T Completed Methanosarcina mazei Go1 proteins

Microbial/194439 F Completed Chlorobium tepidum TLS

Microbial/194439 T Completed Chlorobium tepidum TLS proteins

Microbial/196162 F Completed Nocardioides sp. JS614

Microbial/196162 T Completed Nocardioides sp. JS614 proteins

Microbial/196164 F Completed Corynebacterium efficiens YS-314

Microbial/196164 T Completed Corynebacterium efficiens YS-314 proteins

Microbial/197 F Campylobacter jejuni genomic sequences

Microbial/197 T Completed Campylobacter jejuni proteins

Microbial/197221 F Completed Thermosynechococcus elongatus BP-1

Microbial/197221 T Completed Thermosynechococcus elongatus BP-1 proteins

Microbial/198252 F Candidatus Pelagibacter ubique genomic sequences

Microbial/198252 T Completed Candidatus Pelagibacter ubique proteins

Microbial/203120 F Completed Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Microbial/203120 T Completed Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Microbial/203122 F Completed Saccharophagus degradans 2-40

Microbial/203122 T Completed Saccharophagus degradans 2-40 proteins

Microbial/203124 F Completed Trichodesmium erythraeum IMS101

Microbial/203124 T Completed Trichodesmium erythraeum IMS101 proteins

Microbial/2039 F Completed Tropheryma whipplei

Microbial/2039 T Completed Tropheryma whipplei proteins

Microbial/203907 F Completed Candidatus Blochmannia floridanus

Microbial/203907 T Completed Candidatus Blochmannia floridanus proteins

Microbial/204669 F Completed Acidobacteria bacterium Ellin345

Microbial/204669 T Completed Acidobacteria bacterium Ellin345 proteins

Microbial/204773 F Completed Herminiimonas arsenicoxydans

Microbial/204773 T Completed Herminiimonas arsenicoxydans proteins

Microbial/205918 F Completed Pseudomonas syringae pv. syringae B728a

Microbial/205918 T Completed Pseudomonas syringae pv. syringae B728a proteins

Microbial/207559 F Completed Desulfovibrio desulfuricans subsp. desulfuricans str. G20

Microbial/207559 T Completed Desulfovibrio desulfuricans subsp. desulfuricans str. G20

Microbial/207949 F Unfinished Oceanobacter sp. RED65

Microbial/207949 T Unfinished Oceanobacter sp. RED65 proteins

Microbial/207954 F Unfinished Neptuniibacter caesariensis

Microbial/207954 T Unfinished Neptuniibacter caesariensis proteins

Microbial/2099 F Completed Mycoplasma hyopneumoniae

Microbial/2099 T Completed Mycoplasma hyopneumoniae proteins

Microbial/210 F Helicobacter pylori genomic sequences

Microbial/210 T Completed Helicobacter pylori proteins

Microbial/210007 F Completed Streptococcus mutans UA159

Microbial/210007 T Completed Streptococcus mutans UA159 proteins

Microbial/2102 F Mycoplasma mycoides genomic sequences

Microbial/2102 T Completed Mycoplasma mycoides proteins

Microbial/211586 F Completed Shewanella oneidensis MR-1

Microbial/211586 T Completed Shewanella oneidensis MR-1 proteins

Microbial/212042 F Completed Anaplasma phagocytophilum HZ

Microbial/212042 T Completed Anaplasma phagocytophilum HZ proteins

Microbial/212717 F Completed Clostridium tetani E88

Microbial/212717 T Completed Clostridium tetani E88 proteins

Microbial/2130 F Ureaplasma urealyticum genomic sequences

Microbial/2130 T Completed Ureaplasma urealyticum proteins

Microbial/214688 F Unfinished Gemmata obscuriglobus UQM 2246

Microbial/214688 T Unfinished Gemmata obscuriglobus UQM 2246 proteins

Microbial/216389 F Completed Dehalococcoides sp. BAV1

Microbial/216389 T Completed Dehalococcoides sp. BAV1 proteins

Microbial/216432 F Unfinished Croceibacter atlanticus HTCC2559

Microbial/216432 T Unfinished Croceibacter atlanticus HTCC2559 proteins

Microbial/216594 F Completed Mycobacterium marinum M

Microbial/216594 T Completed Mycobacterium marinum M proteins

Microbial/216816 F Bifidobacterium longum genomic sequences

Microbial/216816 T Completed Bifidobacterium longum proteins

Microbial/2173 F Methanobrevibacter smithii genomic sequences

Microbial/2173 T Completed Methanobrevibacter smithii proteins

Microbial/218491 F Completed Pectobacterium atrosepticum SCRI1043

Microbial/218491 T Completed Pectobacterium atrosepticum SCRI1043 proteins

Microbial/218497 F Completed Chlamydophila abortus S26/3

Microbial/218497 T Completed Chlamydophila abortus S26/3 proteins

Microbial/220668 F Completed Lactobacillus plantarum WCFS1

Microbial/220668 T Completed Lactobacillus plantarum WCFS1 proteins

Microbial/221109 F Completed Oceanobacillus iheyensis HTE831

Microbial/221109 T Completed Oceanobacillus iheyensis HTE831 proteins

Microbial/221359 F Unfinished Synechococcus sp. RS9916

Microbial/221359 T Unfinished Synechococcus sp. RS9916 proteins

Microbial/221360 F Unfinished Synechococcus sp. RS9917

Microbial/221360 T Unfinished Synechococcus sp. RS9917 proteins

Microbial/221988 F Completed Mannheimia succiniciproducens MBEL55E

Microbial/221988 T Completed Mannheimia succiniciproducens MBEL55E proteins

Microbial/222891 F Completed Neorickettsia sennetsu str. Miyayama

Microbial/222891 T Completed Neorickettsia sennetsu str. Miyayama proteins

Microbial/2242 F Completed Halobacterium salinarum

Microbial/2242 T Completed Halobacterium salinarum proteins

Microbial/224324 F Completed Aquifex aeolicus VF5

Microbial/224324 T Completed Aquifex aeolicus VF5 proteins

Microbial/224325 F Completed Archaeoglobus fulgidus DSM 4304

Microbial/224325 T Completed Archaeoglobus fulgidus DSM 4304 proteins

Microbial/224911 F Completed Bradyrhizobium japonicum USDA 110

Microbial/224911 T Completed Bradyrhizobium japonicum USDA 110 proteins

Microbial/224914 F Completed Brucella melitensis 16M

Microbial/224914 T Completed Brucella melitensis 16M proteins

Microbial/225849 F Completed Shewanella piezotolerans WP3

Microbial/225849 T Completed Shewanella piezotolerans WP3 proteins

Microbial/226186 F Completed Bacteroides thetaiotaomicron VPI-5482

Microbial/226186 T Completed Bacteroides thetaiotaomicron VPI-5482 proteins

Microbial/227882 F Completed Streptomyces avermitilis MA-4680

Microbial/227882 T Completed Streptomyces avermitilis MA-4680 proteins

Microbial/227941 F Completed Chlamydophila caviae GPIC

Microbial/227941 T Completed Chlamydophila caviae GPIC proteins

Microbial/228405 F Completed Hyphomonas neptunium ATCC 15444

Microbial/228405 T Completed Hyphomonas neptunium ATCC 15444 proteins

Microbial/228410 F Completed Nitrosomonas europaea ATCC 19718

Microbial/228410 T Completed Nitrosomonas europaea ATCC 19718 proteins

Microbial/228908 F Completed Nanoarchaeum equitans Kin4-M

Microbial/228908 T Completed Nanoarchaeum equitans Kin4-M proteins

Microbial/232721 F Completed Acidovorax sp. JS42

Microbial/232721 T Completed Acidovorax sp. JS42 proteins

Microbial/233150 F Completed Mycoplasma gallisepticum R

Microbial/233150 T Completed Mycoplasma gallisepticum R proteins

Microbial/233412 F Completed Haemophilus ducreyi 35000HP

Microbial/233412 T Completed Haemophilus ducreyi 35000HP proteins

Microbial/234267 F Completed Solibacter usitatus Ellin6076

Microbial/234267 T Completed Solibacter usitatus Ellin6076 proteins

Microbial/234826 F Completed Anaplasma marginale str. St. Maries

Microbial/234826 T Completed Anaplasma marginale str. St. Maries proteins

Microbial/235 F Completed Brucella abortus

Microbial/235 T Completed Brucella abortus proteins

Microbial/235279 F Completed Helicobacter hepaticus ATCC 51449

Microbial/235279 T Completed Helicobacter hepaticus ATCC 51449 proteins

Microbial/235909 F Completed Geobacillus kaustophilus HTA426

Microbial/235909 T Completed Geobacillus kaustophilus HTA426 proteins

Microbial/236097 F Unfinished Alcanivorax sp. DG881

Microbial/2371 F Xylella fastidiosa genomic sequences

Microbial/2371 T Completed Xylella fastidiosa proteins

Microbial/237727 F Unfinished Erythrobacter sp. NAP1

Microbial/237727 T Unfinished Erythrobacter sp. NAP1 proteins

Microbial/238030 F Unfinished Pasteuria nishizawae str. North American

Microbial/238030 T Unfinished Pasteuria nishizawae str. North American proteins

Microbial/24 F Shewanella putrefaciens genomic sequences

Microbial/24 T Completed Shewanella putrefaciens proteins

Microbial/240016 F Unfinished Verrucomicrobium spinosum DSM 4136

Microbial/240016 T Unfinished Verrucomicrobium spinosum DSM 4136 proteins

Microbial/240292 F Completed Anabaena variabilis ATCC 29413

Microbial/240292 T Completed Anabaena variabilis ATCC 29413 proteins

Microbial/243090 F Completed Rhodopirellula baltica SH 1

Microbial/243090 T Completed Rhodopirellula baltica SH 1 proteins

Microbial/243161 F Completed Chlamydia muridarum Nigg

Microbial/243161 T Completed Chlamydia muridarum Nigg proteins

Microbial/243164 F Completed Dehalococcoides ethenogenes 195

Microbial/243164 T Completed Dehalococcoides ethenogenes 195 proteins

Microbial/243230 F Completed Deinococcus radiodurans R1

Microbial/243230 T Completed Deinococcus radiodurans R1 proteins

Microbial/243231 F Completed Geobacter sulfurreducens PCA

Microbial/243231 T Completed Geobacter sulfurreducens PCA proteins

Microbial/243232 F Completed Methanocaldococcus jannaschii DSM 2661

Microbial/243232 T Completed Methanocaldococcus jannaschii DSM 2661 proteins

Microbial/243233 F Completed Methylococcus capsulatus str. Bath

Microbial/243233 T Completed Methylococcus capsulatus str. Bath proteins

Microbial/243265 F Completed Photorhabdus luminescens subsp. laumondii TTO1

Microbial/243265 T Completed Photorhabdus luminescens subsp. laumondii TTO1 proteins

Microbial/243272 F Completed Mycoplasma arthritidis 158L3-1

Microbial/243272 T Completed Mycoplasma arthritidis 158L3-1 proteins

Microbial/243273 F Mycoplasma genitalium G37 genomic sequences

Microbial/243273 T Completed Mycoplasma genitalium G37 proteins

Microbial/243274 F Completed Thermotoga maritima MSB8

Microbial/243274 T Completed Thermotoga maritima MSB8 proteins

Microbial/243275 F Completed Treponema denticola ATCC 35405

Microbial/243275 T Completed Treponema denticola ATCC 35405 proteins

Microbial/243365 F Completed Chromobacterium violaceum ATCC 12472

Microbial/243365 T Completed Chromobacterium violaceum ATCC 12472 proteins

Microbial/246194 F Completed Carboxydothermus hydrogenoformans Z-2901

Microbial/246194 T Completed Carboxydothermus hydrogenoformans Z-2901 proteins

Microbial/246195 F Completed Dichelobacter nodosus VCS1703A

Microbial/246195 T Completed Dichelobacter nodosus VCS1703A proteins

Microbial/246196 F Completed Mycobacterium smegmatis str. MC2 155

Microbial/246196 T Completed Mycobacterium smegmatis str. MC2 155 proteins

Microbial/246197 F Completed Myxococcus xanthus DK 1622

Microbial/246197 T Completed Myxococcus xanthus DK 1622 proteins

Microbial/246200 F Completed Silicibacter pomeroyi DSS-3

Microbial/246200 T Completed Silicibacter pomeroyi DSS-3 proteins

Microbial/246969 F Unfinished Thermococcus sp. AM4

Microbial/247156 F Completed Nocardia farcinica IFM 10152

Microbial/247156 T Completed Nocardia farcinica IFM 10152 proteins

Microbial/247633 F Unfinished marine gamma proteobacterium HTCC2143

Microbial/247633 T Unfinished marine gamma proteobacterium HTCC2143 proteins

Microbial/247634 F Unfinished marine gamma proteobacterium HTCC2148

Microbial/247639 F Unfinished marine gamma proteobacterium HTCC2080

Microbial/247639 T Unfinished marine gamma proteobacterium HTCC2080 proteins

Microbial/251221 F Completed Gloeobacter violaceus PCC 7421

Microbial/251221 T Completed Gloeobacter violaceus PCC 7421 proteins

Microbial/251701 F Pseudomonas syringae group genomosp. 3 genomic sequences

Microbial/251701 T Completed Pseudomonas syringae group genomosp. 3 proteins

Microbial/252305 F Unfinished Oceanicola batsensis HTCC2597

Microbial/252305 T Unfinished Oceanicola batsensis HTCC2597 proteins

Microbial/255470 F Completed Dehalococcoides sp. CBDB1

Microbial/255470 T Completed Dehalococcoides sp. CBDB1 proteins

Microbial/257309 F Completed Corynebacterium diphtheriae NCTC 13129

Microbial/257309 T Completed Corynebacterium diphtheriae NCTC 13129 proteins

Microbial/257310 F Completed Bordetella bronchiseptica RB50

Microbial/257310 T Completed Bordetella bronchiseptica RB50 proteins

Microbial/257311 F Completed Bordetella parapertussis 12822

Microbial/257311 T Completed Bordetella parapertussis 12822 proteins

Microbial/257313 F Completed Bordetella pertussis Tohama I

Microbial/257313 T Completed Bordetella pertussis Tohama I proteins

Microbial/257314 F Completed Lactobacillus johnsonii NCC 533

Microbial/257314 T Completed Lactobacillus johnsonii NCC 533 proteins

Microbial/257363 F Completed Rickettsia typhi str. Wilmington

Microbial/257363 T Completed Rickettsia typhi str. Wilmington proteins

Microbial/259536 F Completed Psychrobacter arcticus 273-4

Microbial/259536 T Completed Psychrobacter arcticus 273-4 proteins

Microbial/259564 F Completed Methanococcoides burtonii DSM 6242

Microbial/259564 T Completed Methanococcoides burtonii DSM 6242 proteins

Microbial/262489 F Unfinished delta proteobacterium MLMS-1

Microbial/262489 T Unfinished delta proteobacterium MLMS-1 proteins

Microbial/262543 F Completed Exiguobacterium sibiricum 255-15

Microbial/262543 T Completed Exiguobacterium sibiricum 255-15 proteins

Microbial/262723 F Completed Mycoplasma synoviae 53

Microbial/262723 T Completed Mycoplasma synoviae 53 proteins

Microbial/262768 F Completed Onion yellows phytoplasma OY-M

Microbial/262768 T Completed Onion yellows phytoplasma OY-M proteins

Microbial/263 F Francisella tularensis genomic sequences

Microbial/263 T Completed Francisella tularensis proteins

Microbial/263437 F Wolbachia endosymbiont of Culex quinquefasciatus genomic sequences

Microbial/263437 T Completed Wolbachia endosymbiont of Culex quinquefasciatus proteins

Microbial/263820 F Completed Picrophilus torridus DSM 9790

Microbial/263820 T Completed Picrophilus torridus DSM 9790 proteins

Microbial/264 F Francisella novicida genomic sequences

Microbial/264 T Completed Francisella novicida proteins

Microbial/264198 F Completed Ralstonia eutropha JMP134

Microbial/264198 T Completed Ralstonia eutropha JMP134 proteins

Microbial/264201 F Completed Candidatus Protochlamydia amoebophila UWE25

Microbial/264201 T Completed Candidatus Protochlamydia amoebophila UWE25 proteins

Microbial/264202 F Completed Chlamydophila felis Fe/C-56

Microbial/264202 T Completed Chlamydophila felis Fe/C-56 proteins

Microbial/264203 F Completed Zymomonas mobilis subsp. mobilis ZM4

Microbial/264203 T Completed Zymomonas mobilis subsp. mobilis ZM4 proteins

Microbial/264462 F Completed Bdellovibrio bacteriovorus HD100

Microbial/264462 T Completed Bdellovibrio bacteriovorus HD100 proteins

Microbial/264730 F Completed Pseudomonas syringae pv. phaseolicola 1448A

Microbial/264730 T Completed Pseudomonas syringae pv. phaseolicola 1448A proteins

Microbial/264732 F Completed Moorella thermoacetica ATCC 39073

Microbial/264732 T Completed Moorella thermoacetica ATCC 39073 proteins

Microbial/265072 F Completed Methylobacillus flagellatus KT

Microbial/265072 T Completed Methylobacillus flagellatus KT proteins

Microbial/265311 F Completed Mesoplasma florum L1

Microbial/265311 T Completed Mesoplasma florum L1 proteins

Microbial/266117 F Completed Rubrobacter xylanophilus DSM 9941

Microbial/266117 T Completed Rubrobacter xylanophilus DSM 9941 proteins

Microbial/266264 F Completed Ralstonia metallidurans CH34

Microbial/266264 T Completed Ralstonia metallidurans CH34 proteins

Microbial/266265 F Completed Burkholderia xenovorans LB400

Microbial/266265 T Completed Burkholderia xenovorans LB400 proteins

Microbial/266779 F Completed Mesorhizobium sp. BNC1

Microbial/266779 T Completed Mesorhizobium sp. BNC1 proteins

Microbial/266834 F Completed Sinorhizobium meliloti 1021

Microbial/266834 T Completed Sinorhizobium meliloti 1021 proteins

Microbial/266835 F Completed Mesorhizobium loti MAFF303099

Microbial/266835 T Completed Mesorhizobium loti MAFF303099 proteins

Microbial/266940 F Completed Kineococcus radiotolerans SRS30216

Microbial/266940 T Completed Kineococcus radiotolerans SRS30216 proteins

Microbial/267748 F Completed Mycoplasma mobile 163K

Microbial/267748 T Completed Mycoplasma mobile 163K proteins

Microbial/269482 F Completed Burkholderia vietnamiensis G4

Microbial/269482 T Completed Burkholderia vietnamiensis G4 proteins

Microbial/269483 F Completed Burkholderia sp. 383

Microbial/269483 T Completed Burkholderia sp. 383 proteins

Microbial/269484 F Completed Ehrlichia canis str. Jake

Microbial/269484 T Completed Ehrlichia canis str. Jake proteins

Microbial/269796 F Completed Rhodospirillum rubrum ATCC 11170

Microbial/269796 T Completed Rhodospirillum rubrum ATCC 11170 proteins

Microbial/269797 F Completed Methanosarcina barkeri str. Fusaro

Microbial/269797 T Completed Methanosarcina barkeri str. Fusaro proteins

Microbial/269798 F Completed Cytophaga hutchinsonii ATCC 33406

Microbial/269798 T Completed Cytophaga hutchinsonii ATCC 33406 proteins

Microbial/269799 F Completed Geobacter metallireducens GS-15

Microbial/269799 T Completed Geobacter metallireducens GS-15 proteins

Microbial/269800 F Completed Thermobifida fusca YX

Microbial/269800 T Completed Thermobifida fusca YX proteins

Microbial/270374 F Unfinished Marinobacter sp. ELB17

Microbial/270374 T Unfinished Marinobacter sp. ELB17 proteins

Microbial/272557 F Completed Aeropyrum pernix K1

Microbial/272557 T Completed Aeropyrum pernix K1 proteins

Microbial/272558 F Completed Bacillus halodurans C-125

Microbial/272558 T Completed Bacillus halodurans C-125 proteins

Microbial/272562 F Completed Clostridium acetobutylicum ATCC 824

Microbial/272562 T Completed Clostridium acetobutylicum ATCC 824 proteins

Microbial/272568 F Completed Gluconacetobacter diazotrophicus PAl 5

Microbial/272568 T Completed Gluconacetobacter diazotrophicus PAl 5 proteins

Microbial/272569 F Completed Haloarcula marismortui ATCC 43049

Microbial/272569 T Completed Haloarcula marismortui ATCC 43049 proteins

Microbial/272621 F Completed Lactobacillus acidophilus NCFM

Microbial/272621 T Completed Lactobacillus acidophilus NCFM proteins

Microbial/272626 F Completed Listeria innocua Clip11262

Microbial/272626 T Completed Listeria innocua Clip11262 proteins

Microbial/272627 F Unfinished Magnetospirillum magnetotacticum MS-1

Microbial/272627 T Unfinished Magnetospirillum magnetotacticum MS-1 proteins

Microbial/272629 F Unfinished Mannheimia haemolytica PHL213

Microbial/272631 F Completed Mycobacterium leprae TN

Microbial/272631 T Completed Mycobacterium leprae TN proteins

Microbial/272633 F Completed Mycoplasma penetrans HF-2

Microbial/272633 T Completed Mycoplasma penetrans HF-2 proteins

Microbial/272634 F Completed Mycoplasma pneumoniae M129

Microbial/272634 T Completed Mycoplasma pneumoniae M129 proteins

Microbial/272635 F Completed Mycoplasma pulmonis UAB CTIP

Microbial/272635 T Completed Mycoplasma pulmonis UAB CTIP proteins

Microbial/272843 F Completed Pasteurella multocida subsp. multocida str. Pm70

Microbial/272843 T Completed Pasteurella multocida subsp. multocida str. Pm70 proteins

Microbial/272844 F Completed Pyrococcus abyssi GE5

Microbial/272844 T Completed Pyrococcus abyssi GE5 proteins

Microbial/272944 F Completed Rickettsia conorii str. Malish 7

Microbial/272944 T Completed Rickettsia conorii str. Malish 7 proteins

Microbial/272947 F Completed Rickettsia prowazekii str. Madrid E

Microbial/272947 T Completed Rickettsia prowazekii str. Madrid E proteins

Microbial/272951 F Unfinished Rickettsia sibirica 246

Microbial/272951 T Unfinished Rickettsia sibirica 246 proteins

Microbial/273057 F Completed Sulfolobus solfataricus P2

Microbial/273057 T Completed Sulfolobus solfataricus P2 proteins

Microbial/273063 F Completed Sulfolobus tokodaii str. 7

Microbial/273063 T Completed Sulfolobus tokodaii str. 7 proteins

Microbial/273068 F Completed Thermoanaerobacter tengcongensis MB4

Microbial/273068 T Completed Thermoanaerobacter tengcongensis MB4 proteins

Microbial/273075 F Completed Thermoplasma acidophilum DSM 1728

Microbial/273075 T Completed Thermoplasma acidophilum DSM 1728 proteins

Microbial/273116 F Completed Thermoplasma volcanium GSS1

Microbial/273116 T Completed Thermoplasma volcanium GSS1 proteins

Microbial/273121 F Completed Wolinella succinogenes DSM 1740

Microbial/273121 T Completed Wolinella succinogenes DSM 1740 proteins

Microbial/274 F Completed Thermus thermophilus

Microbial/274 T Completed Thermus thermophilus proteins

Microbial/278197 F Completed Pediococcus pentosaceus ATCC 25745

Microbial/278197 T Completed Pediococcus pentosaceus ATCC 25745 proteins

Microbial/278957 F Unfinished Opitutaceae bacterium TAV2

Microbial/278957 T Unfinished Opitutaceae bacterium TAV2 proteins

Microbial/279010 F Completed Bacillus licheniformis ATCC 14580

Microbial/279010 T Completed Bacillus licheniformis ATCC 14580 proteins

Microbial/279238 F Completed Novosphingobium aromaticivorans DSM 12444

Microbial/279238 T Completed Novosphingobium aromaticivorans DSM 12444 proteins

Microbial/279808 F Completed Staphylococcus haemolyticus JCSC1435

Microbial/279808 T Completed Staphylococcus haemolyticus JCSC1435 proteins

Microbial/281090 F Completed Leifsonia xyli subsp. xyli str. CTCB07

Microbial/281090 T Completed Leifsonia xyli subsp. xyli str. CTCB07 proteins

Microbial/281689 F Unfinished Desulfuromonas acetoxidans DSM 684

Microbial/281689 T Unfinished Desulfuromonas acetoxidans DSM 684 proteins

Microbial/283165 F Completed Bartonella quintana str. Toulouse

Microbial/283165 T Completed Bartonella quintana str. Toulouse proteins

Microbial/283166 F Completed Bartonella henselae str. Houston-1

Microbial/283166 T Completed Bartonella henselae str. Houston-1 proteins

Microbial/283942 F Completed Idiomarina loihiensis L2TR

Microbial/283942 T Completed Idiomarina loihiensis L2TR proteins

Microbial/28447 F Completed Clavibacter michiganensis

Microbial/28447 T Completed Clavibacter michiganensis proteins

Microbial/28450 F Burkholderia pseudomallei genomic sequences

Microbial/28450 T Completed Burkholderia pseudomallei proteins

Microbial/287 F Pseudomonas aeruginosa genomic sequences

Microbial/287 T Completed Pseudomonas aeruginosa proteins

Microbial/287752 F Unfinished Aurantimonas sp. SI85-9A1

Microbial/287752 T Unfinished Aurantimonas sp. SI85-9A1 proteins

Microbial/288000 F Completed Bradyrhizobium sp. BTAi1

Microbial/288000 T Completed Bradyrhizobium sp. BTAi1 proteins

Microbial/288705 F Completed Renibacterium salmoninarum ATCC 33209

Microbial/288705 T Completed Renibacterium salmoninarum ATCC 33209 proteins

Microbial/28901 F Salmonella enterica genomic sequences

Microbial/28901 T Completed Salmonella enterica proteins

Microbial/289376 F Completed Thermodesulfovibrio yellowstonii DSM 11347

Microbial/289376 T Completed Thermodesulfovibrio yellowstonii DSM 11347 proteins

Microbial/290315 F Completed Chlorobium limicola DSM 245

Microbial/290315 T Completed Chlorobium limicola DSM 245 proteins

Microbial/290318 F Completed Chlorobium phaeovibrioides DSM 265

Microbial/290318 T Completed Chlorobium phaeovibrioides DSM 265 proteins

Microbial/290338 F Completed Citrobacter koseri ATCC BAA-895

Microbial/290338 T Completed Citrobacter koseri ATCC BAA-895 proteins

Microbial/290339 F Completed Enterobacter sakazakii ATCC BAA-894

Microbial/290339 T Completed Enterobacter sakazakii ATCC BAA-894 proteins

Microbial/290340 F Completed Arthrobacter aurescens TC1

Microbial/290340 T Completed Arthrobacter aurescens TC1 proteins

Microbial/290398 F Completed Chromohalobacter salexigens DSM 3043

Microbial/290398 T Completed Chromohalobacter salexigens DSM 3043 proteins

Microbial/290399 F Completed Arthrobacter sp. FB24

Microbial/290399 T Completed Arthrobacter sp. FB24 proteins

Microbial/290400 F Completed Jannaschia sp. CCS1

Microbial/290400 T Completed Jannaschia sp. CCS1 proteins

Microbial/290402 F Completed Clostridium beijerinckii NCIMB 8052

Microbial/290402 T Completed Clostridium beijerinckii NCIMB 8052 proteins

Microbial/290512 F Completed Prosthecochloris aestuarii DSM 271

Microbial/290512 T Completed Prosthecochloris aestuarii DSM 271 proteins

Microbial/290633 F Completed Gluconobacter oxydans 621H

Microbial/290633 T Completed Gluconobacter oxydans 621H proteins

Microbial/291272 F Completed Candidatus Blochmannia pennsylvanicus str. BPEN

Microbial/291272 T Completed Candidatus Blochmannia pennsylvanicus str. BPEN proteins

Microbial/292414 F Completed Silicibacter sp. TM1040

Microbial/292414 T Completed Silicibacter sp. TM1040 proteins

Microbial/292415 F Completed Thiobacillus denitrificans ATCC 25259

Microbial/292415 T Completed Thiobacillus denitrificans ATCC 25259 proteins

Microbial/292459 F Completed Symbiobacterium thermophilum IAM 14863

Microbial/292459 T Completed Symbiobacterium thermophilum IAM 14863 proteins

Microbial/292805 F Completed Wolbachia endosymbiont strain TRS of Brugia malayi

Microbial/292805 T Completed Wolbachia endosymbiont strain TRS of Brugia malayi proteins

Microbial/293613 F Completed Rickettsia canadensis str. McKiel

Microbial/293613 T Completed Rickettsia canadensis str. McKiel proteins

Microbial/293614 F Completed Rickettsia akari str. Hartford

Microbial/293614 T Completed Rickettsia akari str. Hartford proteins

Microbial/293826 F Completed Alkaliphilus metalliredigens QYMF

Microbial/293826 T Completed Alkaliphilus metalliredigens QYMF proteins

Microbial/294 F Completed Pseudomonas fluorescens

Microbial/294 T Completed Pseudomonas fluorescens proteins

Microbial/29449 F Rhizobium etli genomic sequences

Microbial/29449 T Completed Rhizobium etli proteins

Microbial/29461 F Completed Brucella suis

Microbial/29461 T Completed Brucella suis proteins

Microbial/29518 F Borrelia afzelii genomic sequences

Microbial/29518 T Completed Borrelia afzelii proteins

Microbial/29519 F Borrelia garinii genomic sequences

Microbial/29519 T Completed Borrelia garinii proteins

Microbial/296591 F Completed Polaromonas sp. JS666

Microbial/296591 T Completed Polaromonas sp. JS666 proteins

Microbial/298653 F Completed Frankia sp. EAN1pec

Microbial/298653 T Completed Frankia sp. EAN1pec proteins

Microbial/300269 F Completed Shigella sonnei Ss046

Microbial/300269 T Completed Shigella sonnei Ss046 proteins

Microbial/303 F Completed Pseudomonas putida

Microbial/303 T Completed Pseudomonas putida proteins

Microbial/305 F Ralstonia solanacearum genomic sequences

Microbial/305 T Completed Ralstonia solanacearum proteins

Microbial/306254 F Unfinished Campylobacter coli RM2228

Microbial/306254 T Unfinished Campylobacter coli RM2228 proteins

Microbial/306263 F Unfinished Campylobacter lari RM2100

Microbial/306263 T Unfinished Campylobacter lari RM2100 proteins

Microbial/306264 F Unfinished Campylobacter upsaliensis RM3195

Microbial/306264 T Unfinished Campylobacter upsaliensis RM3195 proteins

Microbial/306537 F Completed Corynebacterium jeikeium K411

Microbial/306537 T Completed Corynebacterium jeikeium K411 proteins

Microbial/307502 F Unfinished Wolbachia endosymbiont of Drosophila ananassae

Microbial/307502 T Unfinished Wolbachia endosymbiont of Drosophila ananassae proteins

Microbial/309798 F Completed Coprothermobacter proteolyticus DSM 5265

Microbial/309798 T Completed Coprothermobacter proteolyticus DSM 5265 proteins

Microbial/309799 F Completed Dictyoglomus thermophilum H-6-12

Microbial/309799 T Completed Dictyoglomus thermophilum H-6-12 proteins

Microbial/309807 F Completed Salinibacter ruber DSM 13855

Microbial/309807 T Completed Salinibacter ruber DSM 13855 proteins

Microbial/311424 F Unfinished Dehalococcoides sp. VS

Microbial/311424 T Unfinished Dehalococcoides sp. VS proteins

Microbial/312284 F Unfinished marine actinobacterium PHSC20C1

Microbial/312284 T Unfinished marine actinobacterium PHSC20C1 proteins

Microbial/313589 F Unfinished Janibacter sp. HTCC2649

Microbial/313589 T Unfinished Janibacter sp. HTCC2649 proteins

Microbial/313590 F Unfinished Dokdonia donghaensis MED134

Microbial/313590 T Unfinished Dokdonia donghaensis MED134 proteins

Microbial/313594 F Unfinished Polaribacter irgensii 23

Microbial/313594 T Unfinished Polaribacter irgensii 23proteins

Microbial/313595 F Unfinished Psychroflexus torquis ATCC 700755

Microbial/313595 T Unfinished Psychroflexus torquis ATCC 700755 proteins

Microbial/313596 F Unfinished Robiginitalea biformata HTCC2501

Microbial/313596 T Unfinished Robiginitalea biformata HTCC2501 proteins

Microbial/313598 F Unfinished Polaribacter sp. MED152

Microbial/313598 T Unfinished Polaribacter sp. MED152 proteins

Microbial/313603 F Unfinished Flavobacteriales bacterium HTCC2170

Microbial/313603 T Unfinished Flavobacteriales bacterium HTCC2170 proteins

Microbial/313606 F Unfinished Microscilla marina ATCC 23134

Microbial/313606 T Unfinished Microscilla marina ATCC 23134 proteins

Microbial/313612 F Unfinished Lyngbya sp. PCC 8106

Microbial/313612 T Unfinished Lyngbya sp. PCC 8106 proteins

Microbial/313624 F Unfinished Nodularia spumigena CCY 9414

Microbial/313624 T Unfinished Nodularia spumigena CCY 9414 proteins

Microbial/313625 F Unfinished Synechococcus sp. BL107

Microbial/313625 T Unfinished Synechococcus sp. BL107 proteins

Microbial/313627 F Unfinished Bacillus sp. NRRL B-14911

Microbial/313627 T Unfinished Bacillus sp. NRRL B-14911 proteins

Microbial/313628 F Unfinished Lentisphaera araneosa HTCC2155

Microbial/313628 T Unfinished Lentisphaera araneosa HTCC2155 proteins

Microbial/314225 F Completed Erythrobacter litoralis HTCC2594

Microbial/314225 T Completed Erythrobacter litoralis HTCC2594 proteins

Microbial/314230 F Unfinished Blastopirellula marina DSM 3645

Microbial/314230 T Unfinished Blastopirellula marina DSM 3645 proteins

Microbial/314231 F Unfinished Fulvimarina pelagi HTCC2506

Microbial/314231 T Unfinished Fulvimarina pelagi HTCC2506 proteins

Microbial/314232 F Unfinished Loktanella vestfoldensis SKA53

Microbial/314232 T Unfinished Loktanella vestfoldensis SKA53 proteins

Microbial/314253 F Unfinished Nitrobacter sp. Nb-311A

Microbial/314253 T Unfinished Nitrobacter sp. Nb-311A proteins

Microbial/314254 F Unfinished Oceanicaulis alexandrii HTCC2633

Microbial/314254 T Unfinished Oceanicaulis alexandrii HTCC2633 proteins

Microbial/314256 F Unfinished Oceanicola granulosus HTCC2516

Microbial/314256 T Unfinished Oceanicola granulosus HTCC2516 proteins

Microbial/314260 F Unfinished Parvularcula bermudensis HTCC2503

Microbial/314260 T Unfinished Parvularcula bermudensis HTCC2503 proteins

Microbial/314262 F Unfinished Roseobacter sp. MED193

Microbial/314262 T Unfinished Roseobacter sp. MED193 proteins

Microbial/314264 F Unfinished Roseovarius sp. 217

Microbial/314264 T Unfinished Roseovarius sp. 217 proteins

Microbial/314265 F Unfinished Roseovarius sp. HTCC2601

Microbial/314265 T Unfinished Roseovarius sp. HTCC2601 proteins

Microbial/314266 F Unfinished Sphingomonas sp. SKA58

Microbial/314266 T Unfinished Sphingomonas sp. SKA58 proteins

Microbial/314267 F Unfinished Sulfitobacter sp. NAS-14.1

Microbial/314267 T Unfinished Sulfitobacter sp. NAS-14.1 proteins

Microbial/314270 F Unfinished Rhodobacterales bacterium HTCC2083

Microbial/314271 F Unfinished Rhodobacterales bacterium HTCC2654

Microbial/314271 T Unfinished Rhodobacterales bacterium HTCC2654 proteins

Microbial/314275 F Completed Alteromonas macleodii 'Deep ecotype'

Microbial/314275 T Completed Alteromonas macleodii 'Deep ecotype' proteins

Microbial/314276 F Unfinished Idiomarina baltica OS145

Microbial/314276 T Unfinished Idiomarina baltica OS145 proteins

Microbial/314277 F Unfinished Marinomonas sp. MED121

Microbial/314277 T Unfinished Marinomonas sp. MED121 proteins

Microbial/314278 F Unfinished Nitrococcus mobilis Nb-231

Microbial/314278 T Unfinished Nitrococcus mobilis Nb-231 proteins

Microbial/314282 F Unfinished Psychromonas sp. CNPT3

Microbial/314282 T Unfinished Psychromonas sp. CNPT3 proteins

Microbial/314283 F Unfinished Reinekea sp. MED297

Microbial/314283 T Unfinished Reinekea sp. MED297 proteins

Microbial/314285 F Unfinished Congregibacter litoralis KT71

Microbial/314285 T Unfinished Congregibacter litoralis KT71 proteins

Microbial/314287 F Unfinished gamma proteobacterium HTCC2207

Microbial/314287 T Unfinished gamma proteobacterium HTCC2207 proteins

Microbial/314288 F Unfinished Vibrio alginolyticus 12G01

Microbial/314288 T Unfinished Vibrio alginolyticus 12G01 proteins

Microbial/314289 F Unfinished Vibrio campbellii AND4

Microbial/314289 T Unfinished Vibrio campbellii AND4 proteins

Microbial/314290 F Unfinished Vibrio sp. MED222

Microbial/314290 T Unfinished Vibrio sp. MED222 proteins

Microbial/314291 F Unfinished Vibrio splendidus 12B01

Microbial/314291 T Unfinished Vibrio splendidus 12B01 proteins

Microbial/314292 F Unfinished Vibrio angustum S14

Microbial/314292 T Unfinished Vibrio angustum S14 proteins

Microbial/314315 F Completed Lactobacillus sakei subsp. sakei 23K

Microbial/314315 T Completed Lactobacillus sakei subsp. sakei 23K proteins

Microbial/314345 F Unfinished Mariprofundus ferrooxydans PV-1

Microbial/314345 T Unfinished Mariprofundus ferrooxydans PV-1 proteins

Microbial/314607 F Unfinished beta proteobacterium KB13

Microbial/314608 F Unfinished Shewanella benthica KT99

Microbial/314608 T Unfinished Shewanella benthica KT99 proteins

Microbial/314723 F Completed Borrelia hermsii DAH

Microbial/314723 T Completed Borrelia hermsii DAH proteins

Microbial/314724 F Completed Borrelia turicatae 91E135

Microbial/314724 T Completed Borrelia turicatae 91E135 proteins

Microbial/315456 F Completed Rickettsia felis URRWXCal2

Microbial/315456 T Completed Rickettsia felis URRWXCal2 proteins

Microbial/315730 F Completed Bacillus weihenstephanensis KBAB4

Microbial/315730 T Completed Bacillus weihenstephanensis KBAB4 proteins

Microbial/315749 F Completed Bacillus cereus subsp. cytotoxis NVH 391-98

Microbial/315749 T Completed Bacillus cereus subsp. cytotoxis NVH 391-98 proteins

Microbial/316067 F Unfinished Geobacter sp. FRC-32

Microbial/316067 T Unfinished Geobacter sp. FRC-32 proteins

Microbial/316273 F Completed Xanthomonas campestris pv. vesicatoria str. 85-10

Microbial/316273 T Completed Xanthomonas campestris pv. vesicatoria str. 85-10 proteins

Microbial/316274 F Completed Herpetosiphon aurantiacus ATCC 23779

Microbial/316274 T Completed Herpetosiphon aurantiacus ATCC 23779 proteins

Microbial/316275 F Completed Aliivibrio salmonicida LFI1238

Microbial/316275 T Completed Aliivibrio salmonicida LFI1238 proteins

Microbial/316278 F Completed Synechococcus sp. RCC307

Microbial/316278 T Completed Synechococcus sp. RCC307 proteins

Microbial/316279 F Completed Synechococcus sp. CC9902

Microbial/316279 T Completed Synechococcus sp. CC9902 proteins

Microbial/317025 F Completed Thiomicrospira crunogena XCL-2

Microbial/317025 T Completed Thiomicrospira crunogena XCL-2 proteins

Microbial/317655 F Completed Sphingopyxis alaskensis RB2256

Microbial/317655 T Completed Sphingopyxis alaskensis RB2256 proteins

Microbial/318161 F Completed Shewanella denitrificans OS217

Microbial/318161 T Completed Shewanella denitrificans OS217 proteins

Microbial/318167 F Completed Shewanella frigidimarina NCIMB 400

Microbial/318167 T Completed Shewanella frigidimarina NCIMB 400 proteins

Microbial/318586 F Completed Paracoccus denitrificans PD1222

Microbial/318586 T Completed Paracoccus denitrificans PD1222 proteins

Microbial/319225 F Completed Pelodictyon luteolum DSM 273

Microbial/319225 T Completed Pelodictyon luteolum DSM 273 proteins

Microbial/319795 F Completed Deinococcus geothermalis DSM 11300

Microbial/319795 T Completed Deinococcus geothermalis DSM 11300 proteins

Microbial/32046 F Completed Synechococcus elongatus

Microbial/32046 T Completed Synechococcus elongatus proteins

Microbial/32049 F Completed Synechococcus sp. PCC 7002

Microbial/32049 T Completed Synechococcus sp. PCC 7002 proteins

Microbial/32051 F Completed Synechococcus sp. WH 7803

Microbial/32051 T Completed Synechococcus sp. WH 7803 proteins

Microbial/320771 F Unfinished bacterium Ellin514

Microbial/320771 T Unfinished bacterium Ellin514 proteins

Microbial/321327 F Completed Synechococcus sp. JA-3-3Ab

Microbial/321327 T Completed Synechococcus sp. JA-3-3Ab proteins

Microbial/321332 F Completed Synechococcus sp. JA-2-3B'a(2-13)

Microbial/321332 T Completed Synechococcus sp. JA-2-3B'a(2-13) proteins

Microbial/321955 F Unfinished Brevibacterium linens BL2

Microbial/321955 T Unfinished Brevibacterium linens BL2 proteins

Microbial/322098 F Completed Aster yellows witches'-broom phytoplasma AYWB

Microbial/322098 T Completed Aster yellows witches'-broom phytoplasma AYWB proteins

Microbial/322866 F Unfinished Leptolyngbya valderiana BDU 20041

Microbial/322866 T Unfinished Leptolyngbya valderiana BDU 20041 proteins

Microbial/323097 F Completed Nitrobacter hamburgensis X14

Microbial/323097 T Completed Nitrobacter hamburgensis X14 proteins

Microbial/323098 F Completed Nitrobacter winogradskyi Nb-255

Microbial/323098 T Completed Nitrobacter winogradskyi Nb-255 proteins

Microbial/323259 F Completed Methanospirillum hungatei JF-1

Microbial/323259 T Completed Methanospirillum hungatei JF-1 proteins

Microbial/323848 F Completed Nitrosospira multiformis ATCC 25196

Microbial/323848 T Completed Nitrosospira multiformis ATCC 25196 proteins

Microbial/323850 F Completed Shewanella loihica PV-4

Microbial/323850 T Completed Shewanella loihica PV-4 proteins

Microbial/324057 F Unfinished Paenibacillus sp. JDR-2

Microbial/324057 T Unfinished Paenibacillus sp. JDR-2 proteins

Microbial/324602 F Completed Chloroflexus aurantiacus J-10-fl

Microbial/324602 T Completed Chloroflexus aurantiacus J-10-fl proteins

Microbial/324925 F Completed Pelodictyon phaeoclathratiforme BU-1

Microbial/324925 T Completed Pelodictyon phaeoclathratiforme BU-1 proteins

Microbial/326297 F Completed Shewanella amazonensis SB2B

Microbial/326297 T Completed Shewanella amazonensis SB2B proteins

Microbial/326298 F Completed Sulfurimonas denitrificans DSM 1251

Microbial/326298 T Completed Sulfurimonas denitrificans DSM 1251 proteins

Microbial/326423 F Completed Bacillus amyloliquefaciens FZB42

Microbial/326423 T Completed Bacillus amyloliquefaciens FZB42 proteins

Microbial/326424 F Completed Frankia alni ACN14a

Microbial/326424 T Completed Frankia alni ACN14a proteins

Microbial/326427 F Unfinished Chloroflexus aggregans DSM 9485

Microbial/326427 T Unfinished Chloroflexus aggregans DSM 9485 proteins

Microbial/326442 F Completed Pseudoalteromonas haloplanktis TAC125

Microbial/326442 T Completed Pseudoalteromonas haloplanktis TAC125 proteins

Microbial/329 F Ralstonia pickettii genomic sequences

Microbial/329 T Completed Ralstonia pickettii proteins

Microbial/329726 F Completed Acaryochloris marina MBIC11017

Microbial/329726 T Completed Acaryochloris marina MBIC11017 proteins

Microbial/330779 F Completed Sulfolobus acidocaldarius DSM 639

Microbial/330779 T Completed Sulfolobus acidocaldarius DSM 639 proteins

Microbial/331869 F Unfinished alpha proteobacterium BAL199

Microbial/331869 T Unfinished alpha proteobacterium BAL199 proteins

Microbial/333146 F Unfinished Ferroplasma acidarmanus fer1

Microbial/333849 F Unfinished Enterococcus faecium DO

Microbial/333849 T Unfinished Enterococcus faecium DO proteins

Microbial/333990 F Unfinished Carnobacterium sp. AT7

Microbial/333990 T Unfinished Carnobacterium sp. AT7 proteins

Microbial/334390 F Completed Lactobacillus fermentum IFO 3956

Microbial/334390 T Completed Lactobacillus fermentum IFO 3956 proteins

Microbial/334413 F Completed Finegoldia magna ATCC 29328

Microbial/334413 T Completed Finegoldia magna ATCC 29328 proteins

Microbial/335283 F Completed Nitrosomonas eutropha C91

Microbial/335283 T Completed Nitrosomonas eutropha C91 proteins

Microbial/335284 F Completed Psychrobacter cryohalolentis K5

Microbial/335284 T Completed Psychrobacter cryohalolentis K5 proteins

Microbial/335541 F Completed Syntrophomonas wolfei subsp. wolfei str. Goettingen

Microbial/335541 T Completed Syntrophomonas wolfei subsp. wolfei str. Goettingen proteins

Microbial/335543 F Completed Syntrophobacter fumaroxidans MPOB

Microbial/335543 T Completed Syntrophobacter fumaroxidans MPOB proteins

Microbial/336810 F Candidatus Sulcia muelleri genomic sequences

Microbial/336810 T Completed Candidatus Sulcia muelleri proteins

Microbial/338963 F Completed Pelobacter carbinolicus DSM 2380

Microbial/338963 T Completed Pelobacter carbinolicus DSM 2380 proteins

Microbial/338966 F Completed Pelobacter propionicus DSM 2379

Microbial/338966 T Completed Pelobacter propionicus DSM 2379 proteins

Microbial/338969 F Completed Rhodoferax ferrireducens T118

Microbial/338969 T Completed Rhodoferax ferrireducens T118 proteins

Microbial/339 F Completed Xanthomonas campestris

Microbial/339 T Completed Xanthomonas campestris proteins

Microbial/339671 F Completed Actinobacillus succinogenes 130Z

Microbial/339671 T Completed Actinobacillus succinogenes 130Z proteins

Microbial/339860 F Completed Methanosphaera stadtmanae DSM 3091

Microbial/339860 T Completed Methanosphaera stadtmanae DSM 3091 proteins

Microbial/33990 F Completed Rickettsia bellii

Microbial/33990 T Completed Rickettsia bellii proteins

Microbial/340047 F Completed Mycoplasma capricolum subsp. capricolum ATCC 27343

Microbial/340047 T Completed Mycoplasma capricolum subsp. capricolum ATCC 27343 proteins

Microbial/340099 F Completed Thermoanaerobacter pseudethanolicus ATCC 33223

Microbial/340099 T Completed Thermoanaerobacter pseudethanolicus ATCC 33223 proteins

Microbial/340100 F Completed Bordetella petrii DSM 12804

Microbial/340100 T Completed Bordetella petrii DSM 12804 proteins

Microbial/340101 F Unfinished Victivallis vadensis ATCC BAA-548

Microbial/340101 T Unfinished Victivallis vadensis ATCC BAA-548 proteins

Microbial/340102 F Completed Pyrobaculum arsenaticum DSM 13514

Microbial/340102 T Completed Pyrobaculum arsenaticum DSM 13514 proteins

Microbial/340177 F Completed Chlorobium chlorochromatii CaD3

Microbial/340177 T Completed Chlorobium chlorochromatii CaD3 proteins

Microbial/342108 F Completed Magnetospirillum magneticum AMB-1

Microbial/342108 T Completed Magnetospirillum magneticum AMB-1 proteins

Microbial/342113 F Unfinished Burkholderia oklahomensis

Microbial/342113 T Unfinished Burkholderia oklahomensis proteins

Microbial/342451 F Completed Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Microbial/342451 T Completed Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Microbial/342610 F Completed Pseudoalteromonas atlantica T6c

Microbial/342610 T Completed Pseudoalteromonas atlantica T6c proteins

Microbial/343509 F Completed Sodalis glossinidius str. 'morsitans'

Microbial/343509 T Completed Sodalis glossinidius str. 'morsitans' proteins

Microbial/344747 F Unfinished Planctomyces maris DSM 8797

Microbial/344747 T Unfinished Planctomyces maris DSM 8797 proteins

Microbial/345219 F Unfinished Bacillus coagulans 36D1

Microbial/345219 T Unfinished Bacillus coagulans 36D1 proteins

Microbial/347 F Xanthomonas oryzae genomic sequences

Microbial/347 T Completed Xanthomonas oryzae proteins

Microbial/347255 F Unfinished Rickettsia africae ESF-5

Microbial/347255 T Unfinished Rickettsia africae ESF-5 proteins

Microbial/347257 F Completed Mycoplasma agalactiae PG2

Microbial/347257 T Completed Mycoplasma agalactiae PG2 proteins

Microbial/348780 F Completed Natronomonas pharaonis DSM 2160

Microbial/348780 T Completed Natronomonas pharaonis DSM 2160 proteins

Microbial/349106 F Completed Psychrobacter sp. PRwf-1

Microbial/349106 T Completed Psychrobacter sp. PRwf-1 proteins

Microbial/349124 F Completed Halorhodospira halophila SL1

Microbial/349124 T Completed Halorhodospira halophila SL1 proteins

Microbial/349161 F Completed Desulfotomaculum reducens MI-1

Microbial/349161 T Completed Desulfotomaculum reducens MI-1 proteins

Microbial/349163 F Completed Acidiphilium cryptum JF-5

Microbial/349163 T Completed Acidiphilium cryptum JF-5 proteins

Microbial/349307 F Completed Methanosaeta thermophila PT

Microbial/349307 T Completed Methanosaeta thermophila PT proteins

Microbial/349519 F Completed Leuconostoc citreum KM20

Microbial/349519 T Completed Leuconostoc citreum KM20 proteins

Microbial/349521 F Completed Hahella chejuensis KCTC 2396

Microbial/349521 T Completed Hahella chejuensis KCTC 2396 proteins

Microbial/349741 F Completed Akkermansia muciniphila ATCC BAA-835

Microbial/349741 T Completed Akkermansia muciniphila ATCC BAA-835 proteins

Microbial/349965 F Unfinished Yersinia intermedia ATCC 29909

Microbial/349965 T Unfinished Yersinia intermedia ATCC 29909 proteins

Microbial/349966 F Unfinished Yersinia frederiksenii ATCC 33641

Microbial/349966 T Unfinished Yersinia frederiksenii ATCC 33641 proteins

Microbial/349967 F Unfinished Yersinia mollaretii ATCC 43969

Microbial/349967 T Unfinished Yersinia mollaretii ATCC 43969 proteins

Microbial/349968 F Unfinished Yersinia bercovieri ATCC 43970

Microbial/349968 T Unfinished Yersinia bercovieri ATCC 43970 proteins

Microbial/350054 F Completed Mycobacterium gilvum PYR-GCK

Microbial/350054 T Completed Mycobacterium gilvum PYR-GCK proteins

Microbial/350058 F Completed Mycobacterium vanbaalenii PYR-1

Microbial/350058 T Completed Mycobacterium vanbaalenii PYR-1 proteins

Microbial/350688 F Completed Alkaliphilus oremlandii OhILAs

Microbial/350688 T Completed Alkaliphilus oremlandii OhILAs proteins

Microbial/350701 F Unfinished Burkholderia dolosa AUO158

Microbial/351016 F Unfinished Roseobacter sp. AzwK-3b

Microbial/351016 T Unfinished Roseobacter sp. AzwK-3b proteins

Microbial/351348 F Completed Marinobacter aquaeolei VT8

Microbial/351348 T Completed Marinobacter aquaeolei VT8 proteins

Microbial/351605 F Completed Geobacter uraniireducens Rf4

Microbial/351605 T Completed Geobacter uraniireducens Rf4 proteins

Microbial/351607 F Completed Acidothermus cellulolyticus 11B

Microbial/351607 T Completed Acidothermus cellulolyticus 11B proteins

Microbial/351627 F Completed Caldicellulosiruptor saccharolyticus DSM 8903

Microbial/351627 T Completed Caldicellulosiruptor saccharolyticus DSM 8903 proteins

Microbial/351745 F Completed Shewanella sp. W3-18-1

Microbial/351745 T Completed Shewanella sp. W3-18-1 proteins

Microbial/354 F Unfinished Azotobacter vinelandii

Microbial/354 T Unfinished Azotobacter vinelandii proteins

Microbial/357804 F Completed Psychromonas ingrahamii 37

Microbial/357804 T Completed Psychromonas ingrahamii 37 proteins

Microbial/357808 F Completed Roseiflexus sp. RS-1

Microbial/357808 T Completed Roseiflexus sp. RS-1 proteins

Microbial/357809 F Completed Clostridium phytofermentans ISDg

Microbial/357809 T Completed Clostridium phytofermentans ISDg proteins

Microbial/360095 F Completed Bartonella bacilliformis KC583

Microbial/360095 T Completed Bartonella bacilliformis KC583 proteins

Microbial/360104 F Completed Campylobacter concisus 13826

Microbial/360104 T Completed Campylobacter concisus 13826 proteins

Microbial/360105 F Completed Campylobacter curvus 525.92

Microbial/360105 T Completed Campylobacter curvus 525.92 proteins

Microbial/360106 F Completed Campylobacter fetus subsp. fetus 82-40

Microbial/360106 T Completed Campylobacter fetus subsp. fetus 82-40 proteins

Microbial/360107 F Completed Campylobacter hominis ATCC BAA-381

Microbial/360107 T Completed Campylobacter hominis ATCC BAA-381 proteins

Microbial/360910 F Completed Bordetella avium 197N

Microbial/360910 T Completed Bordetella avium 197N proteins

Microbial/360911 F Unfinished Exiguobacterium sp. AT1b

Microbial/360911 T Unfinished Exiguobacterium sp. AT1b proteins

Microbial/362242 F Completed Mycobacterium ulcerans Agy99

Microbial/362242 T Completed Mycobacterium ulcerans Agy99 proteins

Microbial/362948 F Completed Lactobacillus salivarius UCC118

Microbial/362948 T Completed Lactobacillus salivarius UCC118 proteins

Microbial/362976 F Completed Haloquadratum walsbyi DSM 16790

Microbial/362976 T Completed Haloquadratum walsbyi DSM 16790 proteins

Microbial/363253 F Completed Lawsonia intracellularis PHE/MN1-00

Microbial/363253 T Completed Lawsonia intracellularis PHE/MN1-00 proteins

Microbial/365044 F Completed Polaromonas naphthalenivorans CJ2

Microbial/365044 T Completed Polaromonas naphthalenivorans CJ2 proteins

Microbial/366394 F Completed Sinorhizobium medicae WSM419

Microbial/366394 T Completed Sinorhizobium medicae WSM419 proteins

Microbial/366602 F Completed Caulobacter sp. K31

Microbial/366602 T Completed Caulobacter sp. K31 proteins

Microbial/367336 F Unfinished Rhodobacterales bacterium HTCC2255

Microbial/367336 T Unfinished Rhodobacterales bacterium HTCC2255 proteins

Microbial/367737 F Completed Arcobacter butzleri RM4018

Microbial/367737 T Completed Arcobacter butzleri RM4018 proteins

Microbial/36809 F Completed Mycobacterium abscessus

Microbial/36809 T Completed Mycobacterium abscessus proteins

Microbial/368407 F Completed Methanoculleus marisnigri JR1

Microbial/368407 T Completed Methanoculleus marisnigri JR1 proteins

Microbial/368408 F Completed Thermofilum pendens Hrk 5

Microbial/368408 T Completed Thermofilum pendens Hrk 5 proteins

Microbial/36870 F Completed Wigglesworthia glossinidia endosymbiont of Glossina

Microbial/36870 T Completed Wigglesworthia glossinidia endosymbiont of Glossina

Microbial/369723 F Completed Salinispora tropica CNB-440

Microbial/369723 T Completed Salinispora tropica CNB-440 proteins

Microbial/370438 F Completed Pelotomaculum thermopropionicum SI

Microbial/370438 T Completed Pelotomaculum thermopropionicum SI proteins

Microbial/373903 F Unfinished Halothermothrix orenii H 168

Microbial/373903 T Unfinished Halothermothrix orenii H 168 proteins

Microbial/374463 F Completed Baumannia cicadellinicola str. Hc (Homalodisca coagulata)

Microbial/374463 T Completed Baumannia cicadellinicola str. Hc (Homalodisca coagulata)

Microbial/37447 F Unfinished Octadecabacter antarcticus

Microbial/375286 F Completed Janthinobacterium sp. Marseille

Microbial/375286 T Completed Janthinobacterium sp. Marseille proteins

Microbial/375451 F Completed Roseobacter denitrificans OCh 114

Microbial/375451 T Completed Roseobacter denitrificans OCh 114 proteins

Microbial/376686 F Completed Flavobacterium johnsoniae UW101

Microbial/376686 T Completed Flavobacterium johnsoniae UW101 proteins

Microbial/37692 F Completed Candidatus Phytoplasma mali

Microbial/37692 T Completed Candidatus Phytoplasma mali proteins

Microbial/377431 F Unfinished Chlorobium ferrooxidans DSM 13031

Microbial/377431 T Unfinished Chlorobium ferrooxidans DSM 13031 proteins

Microbial/378753 F Completed Kocuria rhizophila DC2201

Microbial/378753 T Completed Kocuria rhizophila DC2201 proteins

Microbial/378806 F Unfinished Stigmatella aurantiaca DW4/3-1

Microbial/378806 T Unfinished Stigmatella aurantiaca DW4/3-1 proteins

Microbial/379731 F Completed Pseudomonas stutzeri A1501

Microbial/379731 T Completed Pseudomonas stutzeri A1501 proteins

Microbial/380394 F Completed Acidithiobacillus ferrooxidans ATCC 53993

Microbial/380394 T Completed Acidithiobacillus ferrooxidans ATCC 53993 proteins

Microbial/380703 F Completed Aeromonas hydrophila subsp. hydrophila ATCC 7966

Microbial/380703 T Completed Aeromonas hydrophila subsp. hydrophila ATCC 7966 proteins

Microbial/380749 F Completed Hydrogenobaculum sp. Y04AAS1

Microbial/380749 T Completed Hydrogenobaculum sp. Y04AAS1 proteins

Microbial/381666 F Completed Ralstonia eutropha H16

Microbial/381666 T Completed Ralstonia eutropha H16 proteins

Microbial/381764 F Completed Fervidobacterium nodosum Rt17-B1

Microbial/381764 T Completed Fervidobacterium nodosum Rt17-B1 proteins

Microbial/382245 F Completed Aeromonas salmonicida subsp. salmonicida A449

Microbial/382245 T Completed Aeromonas salmonicida subsp. salmonicida A449 proteins

Microbial/382464 F Unfinished Verrucomicrobiae bacterium DG1235

Microbial/382638 F Completed Helicobacter acinonychis str. Sheeba

Microbial/382638 T Completed Helicobacter acinonychis str. Sheeba proteins

Microbial/382640 F Completed Bartonella tribocorum CIP 105476

Microbial/382640 T Completed Bartonella tribocorum CIP 105476 proteins

Microbial/383372 F Completed Roseiflexus castenholzii DSM 13941

Microbial/383372 T Completed Roseiflexus castenholzii DSM 13941 proteins

Microbial/383631 F Unfinished Methylophilales bacterium HTCC2181

Microbial/383631 T Unfinished Methylophilales bacterium HTCC2181 proteins

Microbial/384 F Rhizobium leguminosarum genomic sequences

Microbial/384 T Completed Rhizobium leguminosarum proteins

Microbial/384035 F Unfinished Wolbachia endosymbiont of Drosophila willistoni

Microbial/384035 T Unfinished Wolbachia endosymbiont of Drosophila willistoni

Microbial/384616 F Completed Pyrobaculum islandicum DSM 4184

Microbial/384616 T Completed Pyrobaculum islandicum DSM 4184 proteins

Microbial/384676 F Completed Pseudomonas entomophila L48

Microbial/384676 T Completed Pseudomonas entomophila L48 proteins

Microbial/384765 F Unfinished Labrenzia aggregata IAM 12614

Microbial/384765 T Unfinished Labrenzia aggregata IAM 12614 proteins

Microbial/386043 F Completed Listeria welshimeri serovar 6b str. SLCC5334

Microbial/386043 T Completed Listeria welshimeri serovar 6b str. SLCC5334 proteins

Microbial/386415 F Completed Clostridium novyi NT

Microbial/386415 T Completed Clostridium novyi NT proteins

Microbial/387092 F Completed Nitratiruptor sp. SB155-2

Microbial/387092 T Completed Nitratiruptor sp. SB155-2 proteins

Microbial/387093 F Completed Sulfurovum sp. NBC37-1

Microbial/387093 T Completed Sulfurovum sp. NBC37-1 proteins

Microbial/387344 F Completed Lactobacillus brevis ATCC 367

Microbial/387344 T Completed Lactobacillus brevis ATCC 367 proteins

Microbial/387662 F Completed Candidatus Carsonella ruddii PV

Microbial/387662 T Completed Candidatus Carsonella ruddii PV proteins

Microbial/388399 F Unfinished Sagittula stellata E-37

Microbial/388399 T Unfinished Sagittula stellata E-37 proteins

Microbial/388400 F Unfinished Bacillus sp. B14905

Microbial/388400 T Unfinished Bacillus sp. B14905 proteins

Microbial/388401 F Unfinished Rhodobacterales bacterium HTCC2150

Microbial/388401 T Unfinished Rhodobacterales bacterium HTCC2150 proteins

Microbial/388413 F Unfinished Algoriphagus sp. PR1

Microbial/388413 T Unfinished Algoriphagus sp. PR1 proteins

Microbial/388739 F Unfinished Roseobacter sp. SK209-2-6

Microbial/388739 T Unfinished Roseobacter sp. SK209-2-6 proteins

Microbial/388919 F Completed Streptococcus sanguinis SK36

Microbial/388919 T Completed Streptococcus sanguinis SK36 proteins

Microbial/390874 F Completed Thermotoga petrophila RKU-1

Microbial/390874 T Completed Thermotoga petrophila RKU-1 proteins

Microbial/391009 F Completed Thermosipho melanesiensis BI429

Microbial/391009 T Completed Thermosipho melanesiensis BI429 proteins

Microbial/391037 F Completed Salinispora arenicola CNS-205

Microbial/391037 T Completed Salinispora arenicola CNS-205 proteins

Microbial/391038 F Completed Burkholderia phymatum STM815

Microbial/391038 T Completed Burkholderia phymatum STM815 proteins

Microbial/391165 F Completed Granulibacter bethesdensis CGDNIH1

Microbial/391165 T Completed Granulibacter bethesdensis CGDNIH1 proteins

Microbial/39152 F Completed Methanococcus maripaludis

Microbial/39152 T Completed Methanococcus maripaludis proteins

Microbial/391574 F Unfinished Vibrionales bacterium SWAT-3

Microbial/391574 T Unfinished Vibrionales bacterium SWAT-3 proteins

Microbial/391587 F Unfinished Kordia algicida OT-1

Microbial/391587 T Unfinished Kordia algicida OT-1 proteins

Microbial/391589 F Unfinished Roseobacter sp. GAI101

Microbial/391591 F Unfinished Vibrio shilonii AK1

Microbial/391591 T Unfinished Vibrio shilonii AK1 proteins

Microbial/391592 F Unfinished Caminibacter mediatlanticus TB-2

Microbial/391592 T Unfinished Caminibacter mediatlanticus TB-2 proteins

Microbial/391593 F Unfinished Roseobacter sp. CCS2

Microbial/391593 T Unfinished Roseobacter sp. CCS2 proteins

Microbial/391595 F Unfinished Roseobacter litoralis Och 149

Microbial/391595 T Unfinished Roseobacter litoralis Och 149 proteins

Microbial/391596 F Unfinished Pedobacter sp. BAL39

Microbial/391596 T Unfinished Pedobacter sp. BAL39 proteins

Microbial/391597 F Unfinished Limnobacter sp. MED105

Microbial/391597 T Unfinished Limnobacter sp. MED105 proteins

Microbial/391598 F Unfinished Flavobacteria bacterium BAL38

Microbial/391598 T Unfinished Flavobacteria bacterium BAL38 proteins

Microbial/391600 F Unfinished Brevundimonas sp. BAL3

Microbial/391603 F Unfinished Flavobacteriales bacterium ALC-1

Microbial/391603 T Unfinished Flavobacteriales bacterium ALC-1 proteins

Microbial/391606 F Unfinished Carboxydibrachium pacificum DSM 12653

Microbial/391612 F Unfinished Cyanothece sp. CCY 0110

Microbial/391612 T Unfinished Cyanothece sp. CCY 0110 proteins

Microbial/391613 F Unfinished Roseovarius sp. TM1035

Microbial/391613 T Unfinished Roseovarius sp. TM1035 proteins

Microbial/391615 F Unfinished gamma proteobacterium HTCC5015

Microbial/391623 F Unfinished Thermococcus barophilus MP

Microbial/391624 F Unfinished Oceanibulbus indolifex HEL-45

Microbial/391624 T Unfinished Oceanibulbus indolifex HEL-45 proteins

Microbial/391625 F Unfinished Plesiocystis pacifica SIR-1

Microbial/391625 T Unfinished Plesiocystis pacifica SIR-1 proteins

Microbial/391735 F Completed Verminephrobacter eiseniae EF01-2

Microbial/391735 T Completed Verminephrobacter eiseniae EF01-2 proteins

Microbial/392423 F Unfinished Hydrogenivirga sp. 128-5-R1-1

Microbial/392423 T Unfinished Hydrogenivirga sp. 128-5-R1-1 proteins

Microbial/392484 F Unfinished Methylophaga sp. DMS010

Microbial/392499 F Completed Sphingomonas wittichii RW1

Microbial/392499 T Completed Sphingomonas wittichii RW1 proteins

Microbial/392500 F Completed Shewanella woodyi ATCC 51908

Microbial/392500 T Completed Shewanella woodyi ATCC 51908 proteins

Microbial/392917 F Unfinished Paenibacillus larvae subsp. larvae BRL-230010

Microbial/392917 T Unfinished Paenibacillus larvae subsp. larvae BRL-230010 proteins

Microbial/393305 F Completed Yersinia enterocolitica subsp. enterocolitica 8081

Microbial/393305 T Completed Yersinia enterocolitica subsp. enterocolitica 8081 proteins

Microbial/393595 F Completed Alcanivorax borkumensis SK2

Microbial/393595 T Completed Alcanivorax borkumensis SK2 proteins

Microbial/394104 F Unfinished Endoriftia persephone 'Hot96_1+Hot96_2'

Microbial/394104 T Unfinished Endoriftia persephone 'Hot96_1+Hot96_2' proteins

Microbial/394221 F Completed Maricaulis maris MCS10

Microbial/394221 T Completed Maricaulis maris MCS10 proteins

Microbial/394503 F Unfinished Clostridium cellulolyticum H10

Microbial/394503 T Unfinished Clostridium cellulolyticum H10 proteins

Microbial/395019 F Completed Burkholderia multivorans ATCC 17616

Microbial/395019 T Completed Burkholderia multivorans ATCC 17616 proteins

Microbial/395495 F Completed Leptothrix cholodnii SP-6

Microbial/395495 T Completed Leptothrix cholodnii SP-6 proteins

Microbial/395961 F Unfinished Cyanothece sp. PCC 7425

Microbial/395961 T Unfinished Cyanothece sp. PCC 7425 proteins

Microbial/395962 F Unfinished Cyanothece sp. PCC 8802

Microbial/395962 T Unfinished Cyanothece sp. PCC 8802 proteins

Microbial/395963 F Completed Beijerinckia indica subsp. indica ATCC 9039

Microbial/395963 T Completed Beijerinckia indica subsp. indica ATCC 9039 proteins

Microbial/395965 F Completed Methylocella silvestris BL2

Microbial/395965 T Completed Methylocella silvestris BL2 proteins

Microbial/396588 F Unfinished Thioalkalivibrio sp. HL-EbGR7

Microbial/396588 T Unfinished Thioalkalivibrio sp. HL-EbGR7 proteins

Microbial/396598 F Unfinished Burkholderia graminis C4D1M

Microbial/396598 T Unfinished Burkholderia graminis C4D1M proteins

Microbial/397945 F Completed Acidovorax avenae subsp. citrulli AAC00-1

Microbial/397945 T Completed Acidovorax avenae subsp. citrulli AAC00-1 proteins

Microbial/397948 F Completed Caldivirga maquilingensis IC-167

Microbial/397948 T Completed Caldivirga maquilingensis IC-167 proteins

Microbial/398513 F Unfinished Bifidobacterium bifidum NCIMB 41171

Microbial/398527 F Completed Burkholderia phytofirmans PsJN

Microbial/398527 T Completed Burkholderia phytofirmans PsJN proteins

Microbial/398578 F Completed Delftia acidovorans SPH-1

Microbial/398578 T Completed Delftia acidovorans SPH-1 proteins

Microbial/398579 F Completed Shewanella pealeana ATCC 700345

Microbial/398579 T Completed Shewanella pealeana ATCC 700345 proteins

Microbial/398580 F Completed Dinoroseobacter shibae DFL 12

Microbial/398580 T Completed Dinoroseobacter shibae DFL 12 proteins

Microbial/398720 F Unfinished Leeuwenhoekiella blandensis MED217

Microbial/398720 T Unfinished Leeuwenhoekiella blandensis MED217 proteins

Microbial/398767 F Completed Geobacter lovleyi SZ

Microbial/398767 T Completed Geobacter lovleyi SZ proteins

Microbial/399549 F Completed Metallosphaera sedula DSM 5348

Microbial/399549 T Completed Metallosphaera sedula DSM 5348 proteins

Microbial/399550 F Completed Staphylothermus marinus F1

Microbial/399550 T Completed Staphylothermus marinus F1 proteins

Microbial/399726 F Completed Thermoanaerobacter sp. X514

Microbial/399726 T Completed Thermoanaerobacter sp. X514 proteins

Microbial/399739 F Completed Pseudomonas mendocina ymp

Microbial/399739 T Completed Pseudomonas mendocina ymp proteins

Microbial/399741 F Completed Serratia proteamaculans 568

Microbial/399741 T Completed Serratia proteamaculans 568 proteins

Microbial/399742 F Completed Enterobacter sp. 638

Microbial/399742 T Completed Enterobacter sp. 638 proteins

Microbial/399795 F Unfinished Comamonas testosteroni KF-1

Microbial/399795 T Unfinished Comamonas testosteroni KF-1 proteins

Microbial/400668 F Completed Marinomonas sp. MWYL1

Microbial/400668 T Completed Marinomonas sp. MWYL1 proteins

Microbial/401526 F Unfinished Thermosinus carboxydivorans Nor1

Microbial/401526 T Unfinished Thermosinus carboxydivorans Nor1 proteins

Microbial/402612 F Completed Flavobacterium psychrophilum JIP02/86

Microbial/402612 T Completed Flavobacterium psychrophilum JIP02/86 proteins

Microbial/402881 F Completed Parvibaculum lavamentivorans DS-1

Microbial/402881 T Completed Parvibaculum lavamentivorans DS-1 proteins

Microbial/40324 F Completed Stenotrophomonas maltophilia

Microbial/40324 T Completed Stenotrophomonas maltophilia proteins

Microbial/403833 F Completed Petrotoga mobilis SJ95

Microbial/403833 T Completed Petrotoga mobilis SJ95 proteins

Microbial/404380 F Completed Geobacter bemidjiensis Bem

Microbial/404380 T Completed Geobacter bemidjiensis Bem proteins

Microbial/404589 F Completed Anaeromyxobacter sp. Fw109-5

Microbial/404589 T Completed Anaeromyxobacter sp. Fw109-5 proteins

Microbial/405566 F Completed Lactobacillus helveticus DPC 4571

Microbial/405566 T Completed Lactobacillus helveticus DPC 4571 proteins

Microbial/405948 F Completed Saccharopolyspora erythraea NRRL 2338

Microbial/405948 T Completed Saccharopolyspora erythraea NRRL 2338 proteins

Microbial/406327 F Completed Methanococcus vannielii SB

Microbial/406327 T Completed Methanococcus vannielii SB proteins

Microbial/410358 F Completed Methanocorpusculum labreanum Z

Microbial/410358 T Completed Methanocorpusculum labreanum Z proteins

Microbial/410359 F Completed Pyrobaculum calidifontis JCM 11548

Microbial/410359 T Completed Pyrobaculum calidifontis JCM 11548 proteins

Microbial/411154 F Completed Gramella forsetii KT0803

Microbial/411154 T Completed Gramella forsetii KT0803 proteins

Microbial/411459 F Unfinished Ruminococcus obeum ATCC 29174

Microbial/411459 T Unfinished Ruminococcus obeum ATCC 29174 proteins

Microbial/411460 F Unfinished Ruminococcus torques ATCC 27756

Microbial/411460 T Unfinished Ruminococcus torques ATCC 27756 proteins

Microbial/411461 F Unfinished Dorea formicigenerans ATCC 27755

Microbial/411461 T Unfinished Dorea formicigenerans ATCC 27755 proteins

Microbial/411462 F Unfinished Dorea longicatena DSM 13814

Microbial/411462 T Unfinished Dorea longicatena DSM 13814 proteins

Microbial/411463 F Unfinished Eubacterium ventriosum ATCC 27560

Microbial/411463 T Unfinished Eubacterium ventriosum ATCC 27560 proteins

Microbial/411464 F Unfinished Desulfovibrio piger ATCC 29098

Microbial/411464 T Unfinished Desulfovibrio piger ATCC 29098 proteins

Microbial/411465 F Unfinished Parvimonas micra ATCC 33270

Microbial/411465 T Unfinished Parvimonas micra ATCC 33270 proteins

Microbial/411466 F Unfinished Actinomyces odontolyticus ATCC 17982

Microbial/411466 T Unfinished Actinomyces odontolyticus ATCC 17982 proteins

Microbial/411467 F Unfinished Bacteroides capillosus ATCC 29799

Microbial/411467 T Unfinished Bacteroides capillosus ATCC 29799 proteins

Microbial/411468 F Unfinished Clostridium scindens ATCC 35704

Microbial/411468 T Unfinished Clostridium scindens ATCC 35704 proteins

Microbial/411470 F Unfinished Ruminococcus gnavus ATCC 29149

Microbial/411470 T Unfinished Ruminococcus gnavus ATCC 29149 proteins

Microbial/411474 F Unfinished Coprococcus eutactus ATCC 27759

Microbial/411474 T Unfinished Coprococcus eutactus ATCC 27759 proteins

Microbial/411476 F Unfinished Bacteroides ovatus ATCC 8483

Microbial/411476 T Unfinished Bacteroides ovatus ATCC 8483 proteins

Microbial/411477 F Unfinished Parabacteroides merdae ATCC 43184

Microbial/411477 T Unfinished Parabacteroides merdae ATCC 43184 proteins

Microbial/411479 F Unfinished Bacteroides uniformis ATCC 8492

Microbial/411479 T Unfinished Bacteroides uniformis ATCC 8492 proteins

Microbial/411484 F Unfinished Clostridium sp. SS2/1

Microbial/411484 T Unfinished Clostridium sp. SS2/1 proteins

Microbial/411485 F Unfinished Faecalibacterium prausnitzii M21/2

Microbial/411485 T Unfinished Faecalibacterium prausnitzii M21/2 proteins

Microbial/411489 F Unfinished Clostridium sp. L2-50

Microbial/411489 T Unfinished Clostridium sp. L2-50 proteins

Microbial/411490 F Unfinished Anaerostipes caccae DSM 14662

Microbial/411490 T Unfinished Anaerostipes caccae DSM 14662 proteins

Microbial/411684 F Unfinished Hoeflea phototrophica DFL-43

Microbial/411684 T Unfinished Hoeflea phototrophica DFL-43 proteins

Microbial/411901 F Unfinished Bacteroides caccae ATCC 43185

Microbial/411901 T Unfinished Bacteroides caccae ATCC 43185 proteins

Microbial/411902 F Unfinished Clostridium bolteae ATCC BAA-613

Microbial/411902 T Unfinished Clostridium bolteae ATCC BAA-613 proteins

Microbial/411903 F Unfinished Collinsella aerofaciens ATCC 25986

Microbial/411903 T Unfinished Collinsella aerofaciens ATCC 25986 proteins

Microbial/412418 F Completed Borrelia recurrentis A1

Microbial/412418 T Completed Borrelia recurrentis A1 proteins

Microbial/412419 F Completed Borrelia duttonii Ly

Microbial/412419 T Completed Borrelia duttonii Ly proteins

Microbial/412965 F Completed Candidatus Vesicomyosocius okutanii HA

Microbial/412965 T Completed Candidatus Vesicomyosocius okutanii HA proteins

Microbial/413404 F Completed Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)

Microbial/413404 T Completed Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)

Microbial/41431 F Unfinished Cyanothece sp. PCC 8801

Microbial/41431 T Unfinished Cyanothece sp. PCC 8801 proteins

Microbial/414684 F Completed Rhodospirillum centenum SW

Microbial/414684 T Completed Rhodospirillum centenum SW proteins

Microbial/415426 F Completed Hyperthermus butylicus DSM 5456

Microbial/415426 T Completed Hyperthermus butylicus DSM 5456 proteins

Microbial/416276 F Completed Rickettsia massiliae MTU5

Microbial/416276 T Completed Rickettsia massiliae MTU5 proteins

Microbial/416348 F Unfinished Halorubrum lacusprofundi ATCC 49239

Microbial/416348 T Unfinished Halorubrum lacusprofundi ATCC 49239 proteins

Microbial/416591 F Completed Thermotoga lettingae TMO

Microbial/416591 T Completed Thermotoga lettingae TMO proteins

Microbial/419610 F Completed Methylobacterium extorquens PA1

Microbial/419610 T Completed Methylobacterium extorquens PA1 proteins

Microbial/419665 F Completed Methanococcus aeolicus Nankai-3

Microbial/419665 T Completed Methanococcus aeolicus Nankai-3 proteins

Microbial/420246 F Completed Geobacillus thermodenitrificans NG80-2

Microbial/420246 T Completed Geobacillus thermodenitrificans NG80-2 proteins

Microbial/420336 F Unfinished Epulopiscium sp. 'N.t. morphotype B'

Microbial/420336 T Unfinished Epulopiscium sp. 'N.t. morphotype B' proteins

Microbial/420662 F Completed Methylibium petroleiphilum PM1

Microbial/420662 T Completed Methylibium petroleiphilum PM1 proteins

Microbial/422288 F Unfinished Beggiatoa sp. SS

Microbial/422288 T Unfinished Beggiatoa sp. SS proteins

Microbial/422289 F Unfinished Beggiatoa sp. PS

Microbial/422289 T Unfinished Beggiatoa sp. PS proteins

Microbial/425104 F Completed Shewanella sediminis HAW-EB3

Microbial/425104 T Completed Shewanella sediminis HAW-EB3 proteins

Microbial/426117 F Completed Methylobacterium sp. 4-46

Microbial/426117 T Completed Methylobacterium sp. 4-46 proteins

Microbial/426355 F Completed Methylobacterium radiotolerans JCM 2831

Microbial/426355 T Completed Methylobacterium radiotolerans JCM 2831 proteins

Microbial/428125 F Unfinished Clostridium leptum DSM 753

Microbial/428125 T Unfinished Clostridium leptum DSM 753 proteins

Microbial/428126 F Unfinished Clostridium spiroforme DSM 1552

Microbial/428126 T Unfinished Clostridium spiroforme DSM 1552 proteins

Microbial/428127 F Unfinished Eubacterium dolichum DSM 3991

Microbial/428127 T Unfinished Eubacterium dolichum DSM 3991 proteins

Microbial/428128 F Unfinished Eubacterium siraeum DSM 15702

Microbial/428128 T Unfinished Eubacterium siraeum DSM 15702 proteins

Microbial/431943 F Completed Clostridium kluyveri DSM 555

Microbial/431943 T Completed Clostridium kluyveri DSM 555 proteins

Microbial/435590 F Completed Bacteroides vulgatus ATCC 8482

Microbial/435590 T Completed Bacteroides vulgatus ATCC 8482 proteins

Microbial/435591 F Completed Parabacteroides distasonis ATCC 8503

Microbial/435591 T Completed Parabacteroides distasonis ATCC 8503 proteins

Microbial/436114 F Completed Sulfurihydrogenibium sp. YO3AOP1

Microbial/436114 T Completed Sulfurihydrogenibium sp. YO3AOP1 proteins

Microbial/438753 F Completed Azorhizobium caulinodans ORS 571

Microbial/438753 T Completed Azorhizobium caulinodans ORS 571 proteins

Microbial/439235 F Unfinished Desulfatibacillum alkenivorans AK-01

Microbial/439235 T Unfinished Desulfatibacillum alkenivorans AK-01 proteins

Microbial/439292 F Unfinished Bacillus selenitireducens MLS10

Microbial/439292 T Unfinished Bacillus selenitireducens MLS10 proteins

Microbial/439375 F Completed Ochrobactrum anthropi ATCC 49188

Microbial/439375 T Completed Ochrobactrum anthropi ATCC 49188 proteins

Microbial/439483 F Unfinished Campylobacterales bacterium GD 1

Microbial/439493 F Unfinished Candidatus Pelagibacter sp. HTCC7211

Microbial/439495 F Unfinished Pseudovibrio sp. JE062

Microbial/439496 F Unfinished Rhodobacterales bacterium Y4I

Microbial/439497 F Unfinished Ruegeria sp. R11

Microbial/43989 F Completed Cyanothece sp. ATCC 51142

Microbial/43989 T Completed Cyanothece sp. ATCC 51142 proteins

Microbial/440085 F Unfinished Methylobacterium chloromethanicum CM4

Microbial/440085 T Unfinished Methylobacterium chloromethanicum CM4 proteins

Microbial/440497 F Unfinished Lactobacillus jensenii 1153

Microbial/441166 F Unfinished Burkholderia ubonensis Bu

Microbial/441166 T Unfinished Burkholderia ubonensis Bu proteins

Microbial/441620 F Completed Methylobacterium populi BJ001

Microbial/441620 T Completed Methylobacterium populi BJ001 proteins

Microbial/441768 F Completed Acholeplasma laidlawii PG-8A

Microbial/441768 T Completed Acholeplasma laidlawii PG-8A proteins

Microbial/441769 F Unfinished Bacillus coahuilensis m4-4

Microbial/441769 T Unfinished Bacillus coahuilensis m4-4 proteins

Microbial/443144 F Unfinished Geobacter sp. M21

Microbial/443144 T Unfinished Geobacter sp. M21 proteins

Microbial/443152 F Unfinished Marinobacter algicola DG893

Microbial/443152 T Unfinished Marinobacter algicola DG893 proteins

Microbial/443254 F Unfinished Marinitoga piezophila KA3

Microbial/443255 F Unfinished Streptomyces clavuligerus ATCC 27064

Microbial/443255 T Unfinished Streptomyces clavuligerus ATCC 27064 proteins

Microbial/444157 F Completed Thermoproteus neutrophilus V24Sta

Microbial/444157 T Completed Thermoproteus neutrophilus V24Sta proteins

Microbial/444177 F Completed Lysinibacillus sphaericus C3-41

Microbial/444177 T Completed Lysinibacillus sphaericus C3-41 proteins

Microbial/444178 F Completed Brucella ovis ATCC 25840

Microbial/444178 T Completed Brucella ovis ATCC 25840 proteins

Microbial/445932 F Completed Elusimicrobium minutum Pei191

Microbial/445932 T Completed Elusimicrobium minutum Pei191 proteins

Microbial/445970 F Unfinished Alistipes putredinis DSM 17216

Microbial/445970 T Unfinished Alistipes putredinis DSM 17216 proteins

Microbial/445971 F Unfinished Anaerofustis stercorihominis DSM 17244

Microbial/445971 T Unfinished Anaerofustis stercorihominis DSM 17244 proteins

Microbial/445972 F Unfinished Anaerotruncus colihominis DSM 17241

Microbial/445972 T Unfinished Anaerotruncus colihominis DSM 17241 proteins

Microbial/445973 F Unfinished Clostridium bartlettii DSM 16795

Microbial/445973 T Unfinished Clostridium bartlettii DSM 16795 proteins

Microbial/445974 F Unfinished Clostridium ramosum DSM 1402

Microbial/445974 T Unfinished Clostridium ramosum DSM 1402 proteins

Microbial/445975 F Unfinished Collinsella stercoris DSM 13279

Microbial/445975 T Unfinished Collinsella stercoris DSM 13279 proteins

Microbial/445987 F Unfinished Borrelia valaisiana VS116

Microbial/445987 T Unfinished Borrelia valaisiana VS116 proteins

Microbial/446 F Completed Legionella pneumophila

Microbial/446 T Completed Legionella pneumophila proteins

Microbial/447214 F Unfinished Clostridium butyricum 5521

Microbial/447214 T Unfinished Clostridium butyricum 5521 proteins

Microbial/447217 F Completed Anaeromyxobacter sp. K

Microbial/447217 T Completed Anaeromyxobacter sp. K proteins

Microbial/447454 F Unfinished candidate division TM7 single-cell isolate TM7a

Microbial/447454 T Unfinished candidate division TM7 single-cell isolate TM7a proteins

Microbial/447455 F Unfinished candidate division TM7 single-cell isolate TM7b

Microbial/447455 T Unfinished candidate division TM7 single-cell isolate TM7b proteins

Microbial/447456 F Unfinished candidate division TM7 single-cell isolate TM7c

Microbial/447456 T Unfinished candidate division TM7 single-cell isolate TM7c proteins

Microbial/448385 F Completed Sorangium cellulosum 'So ce 56'

Microbial/448385 T Completed Sorangium cellulosum 'So ce 56' proteins

Microbial/449447 F Completed Microcystis aeruginosa NIES-843

Microbial/449447 T Completed Microcystis aeruginosa NIES-843 proteins

Microbial/449673 F Unfinished Bacteroides stercoris ATCC 43183

Microbial/449673 T Unfinished Bacteroides stercoris ATCC 43183 proteins

Microbial/450851 F Completed Phenylobacterium zucineum HLK1

Microbial/450851 T Completed Phenylobacterium zucineum HLK1 proteins

Microbial/452471 F Completed Candidatus Amoebophilus asiaticus 5a2

Microbial/452471 T Completed Candidatus Amoebophilus asiaticus 5a2 proteins

Microbial/452637 F Completed Opitutus terrae PB90-1

Microbial/452637 T Completed Opitutus terrae PB90-1 proteins

Microbial/452863 F Unfinished Arthrobacter chlorophenolicus A6

Microbial/452863 T Unfinished Arthrobacter chlorophenolicus A6 proteins

Microbial/453591 F Completed Ignicoccus hospitalis KIN4/I

Microbial/453591 T Completed Ignicoccus hospitalis KIN4/I proteins

Microbial/455436 F Unfinished Glaciecola sp. HTCC2999

Microbial/455632 F Completed Streptomyces griseus subsp. griseus NBRC 13350

Microbial/455632 T Completed Streptomyces griseus subsp. griseus NBRC 13350 proteins

Microbial/456298 F Unfinished Haemophilus parasuis 29755

Microbial/456298 T Unfinished Haemophilus parasuis 29755 proteins

Microbial/456320 F Unfinished Methanococcus voltae A3

Microbial/456320 T Unfinished Methanococcus voltae A3 proteins

Microbial/456442 F Completed Candidatus Methanoregula boonei 6A8

Microbial/456442 T Completed Candidatus Methanoregula boonei 6A8 proteins

Microbial/457421 F Unfinished Clostridiales bacterium 1_7_47_FAA

Microbial/457425 F Unfinished Streptomyces albus J1074

Microbial/457429 F Unfinished Streptomyces pristinaespiralis ATCC 25486

Microbial/457429 T Unfinished Streptomyces pristinaespiralis ATCC 25486 proteins

Microbial/457570 F Completed Natranaerobius thermophilus JW/NM-WN-LF

Microbial/457570 T Completed Natranaerobius thermophilus JW/NM-WN-LF proteins

Microbial/458817 F Completed Shewanella halifaxensis HAW-EB4

Microbial/458817 T Completed Shewanella halifaxensis HAW-EB4 proteins

Microbial/460265 F Unfinished Methylobacterium nodulans ORS 2060

Microbial/460265 T Unfinished Methylobacterium nodulans ORS 2060 proteins

Microbial/463191 F Unfinished Streptomyces sviceus ATCC 29083

Microbial/463191 T Unfinished Streptomyces sviceus ATCC 29083 proteins

Microbial/465515 F Unfinished Micrococcus luteus NCTC 2665

Microbial/465515 T Unfinished Micrococcus luteus NCTC 2665 proteins

Microbial/465541 F Unfinished Streptomyces sp. Mg1

Microbial/465541 T Unfinished Streptomyces sp. Mg1 proteins

Microbial/465543 F Unfinished Streptomyces sp. SPB74

Microbial/465543 T Unfinished Streptomyces sp. SPB74 proteins

Microbial/465817 F Completed Erwinia tasmaniensis Et1/99

Microbial/465817 T Completed Erwinia tasmaniensis Et1/99 proteins

Microbial/467705 F Completed Streptococcus gordonii str. Challis substr. CH1

Microbial/467705 T Completed Streptococcus gordonii str. Challis substr. CH1 proteins

Microbial/470 F Acinetobacter baumannii genomic sequences

Microbial/470 T Completed Acinetobacter baumannii proteins

Microbial/470145 F Unfinished Bacteroides coprocola DSM 17136

Microbial/470145 T Unfinished Bacteroides coprocola DSM 17136 proteins

Microbial/471223 F Unfinished Geobacillus sp. WCH70

Microbial/471223 T Unfinished Geobacillus sp. WCH70 proteins

Microbial/471870 F Unfinished Bacteroides intestinalis DSM 17393

Microbial/471870 T Unfinished Bacteroides intestinalis DSM 17393 proteins

Microbial/471871 F Unfinished Clostridium sporogenes ATCC 15579

Microbial/471871 T Unfinished Clostridium sporogenes ATCC 15579 proteins

Microbial/471872 F Unfinished Streptococcus infantarius subsp. infantarius ATCC BAA-102

Microbial/471872 T Unfinished Streptococcus infantarius subsp. infantarius ATCC BAA-102

Microbial/471874 F Unfinished Providencia stuartii ATCC 25827

Microbial/471874 T Unfinished Providencia stuartii ATCC 25827 proteins

Microbial/471875 F Unfinished Ruminococcus lactaris ATCC 29176

Microbial/471875 T Unfinished Ruminococcus lactaris ATCC 29176 proteins

Microbial/473819 F Unfinished Bifidobacterium dentium ATCC 27678

Microbial/473819 T Unfinished Bifidobacterium dentium ATCC 27678 proteins

Microbial/477974 F Completed Candidatus Desulforudis audaxviator MP104C

Microbial/477974 T Completed Candidatus Desulforudis audaxviator MP104C proteins

Microbial/480224 F Unfinished Chloroflexus sp. Y-400-fl

Microbial/480224 T Unfinished Chloroflexus sp. Y-400-fl proteins

Microbial/481448 F Completed Methylacidiphilum infernorum V4

Microbial/481448 T Completed Methylacidiphilum infernorum V4 proteins

Microbial/481743 F Unfinished Geobacillus sp. Y412MC10

Microbial/481743 T Unfinished Geobacillus sp. Y412MC10 proteins

Microbial/483179 F Completed Brucella canis ATCC 23365

Microbial/483179 T Completed Brucella canis ATCC 23365 proteins

Microbial/483215 F Unfinished Bacteroides finegoldii DSM 17565

Microbial/483215 T Unfinished Bacteroides finegoldii DSM 17565 proteins

Microbial/483216 F Unfinished Bacteroides eggerthii DSM 20697

Microbial/483216 T Unfinished Bacteroides eggerthii DSM 20697 proteins

Microbial/483217 F Unfinished Bacteroides dorei DSM 17855

Microbial/483217 T Unfinished Bacteroides dorei DSM 17855 proteins

Microbial/483218 F Unfinished Bacteroides pectinophilus ATCC 43243

Microbial/483218 T Unfinished Bacteroides pectinophilus ATCC 43243 proteins

Microbial/484018 F Unfinished Bacteroides plebeius DSM 17135

Microbial/484018 T Unfinished Bacteroides plebeius DSM 17135 proteins

Microbial/484019 F Completed Thermosipho africanus TCF52B

Microbial/484019 T Completed Thermosipho africanus TCF52B proteins

Microbial/484022 F Completed Francisella philomiragia subsp. philomiragia ATCC 25017

Microbial/484022 T Completed Francisella philomiragia subsp. philomiragia ATCC 25017

Microbial/485 F Neisseria gonorrhoeae genomic sequences

Microbial/485 T Completed Neisseria gonorrhoeae proteins

Microbial/486408 F Lactobacillus rhamnosus HN001 genomic sequences

Microbial/486408 T Completed Lactobacillus rhamnosus HN001 proteins

Microbial/486409 F Unfinished Bifidobacterium animalis subsp. lactis HN019

Microbial/486409 T Unfinished Bifidobacterium animalis subsp. lactis HN019 proteins

Microbial/487 F Completed Neisseria meningitidis

Microbial/487 T Completed Neisseria meningitidis proteins

Microbial/487521 F Unfinished Mycobacterium intracellulare ATCC 13950

Microbial/491915 F Completed Anoxybacillus flavithermus WK1

Microbial/491915 T Completed Anoxybacillus flavithermus WK1 proteins

Microbial/49338 F Desulfitobacterium hafniense genomic sequences

Microbial/49338 T Completed Desulfitobacterium hafniense proteins

Microbial/495036 F Unfinished Geobacillus sp. G11MC16

Microbial/495036 T Unfinished Geobacillus sp. G11MC16 proteins

Microbial/497964 F Unfinished Chthoniobacter flavus Ellin428

Microbial/497964 T Unfinished Chthoniobacter flavus Ellin428 proteins

Microbial/497965 F Unfinished Cyanothece sp. PCC 7822

Microbial/497965 T Unfinished Cyanothece sp. PCC 7822 proteins

Microbial/498211 F Completed Cellvibrio japonicus Ueda107

Microbial/498211 T Completed Cellvibrio japonicus Ueda107 proteins

Microbial/498741 F Unfinished Borrelia sp. SV1

Microbial/498741 T Unfinished Borrelia sp. SV1 proteins

Microbial/498742 F Unfinished Borrelia spielmanii A14S

Microbial/498742 T Unfinished Borrelia spielmanii A14S proteins

Microbial/498761 F Completed Heliobacterium modesticaldum Ice1

Microbial/498761 T Completed Heliobacterium modesticaldum Ice1 proteins

Microbial/498848 F Unfinished Thermus aquaticus Y51MC23

Microbial/498848 T Unfinished Thermus aquaticus Y51MC23 proteins

Microbial/500632 F Unfinished Clostridium nexile DSM 1787

Microbial/500632 T Unfinished Clostridium nexile DSM 1787 proteins

Microbial/500633 F Unfinished Clostridium hiranonis DSM 13275

Microbial/500633 T Unfinished Clostridium hiranonis DSM 13275 proteins

Microbial/500635 F Unfinished Mitsuokella multacida DSM 20544

Microbial/500637 F Unfinished Providencia rustigianii DSM 4541

Microbial/500637 T Unfinished Providencia rustigianii DSM 4541 proteins

Microbial/500639 F Unfinished Enterobacter cancerogenus ATCC 35316

Microbial/500639 T Unfinished Enterobacter cancerogenus ATCC 35316 proteins

Microbial/500640 F Unfinished Citrobacter youngae ATCC 29220

Microbial/502347 F Unfinished Escherichia albertii TW07627

Microbial/502347 T Unfinished Escherichia albertii TW07627 proteins

Microbial/504474 F Completed Corynebacterium urealyticum DSM 7109

Microbial/504474 T Completed Corynebacterium urealyticum DSM 7109 proteins

Microbial/504832 F Completed Oligotropha carboxidovorans OM5

Microbial/504832 T Completed Oligotropha carboxidovorans OM5 proteins

Microbial/50743 F Unfinished unidentified eubacterium SCB49

Microbial/50743 T Unfinished unidentified eubacterium SCB49 proteins

Microbial/511995 F Completed Candidatus Azobacteroides pseudotrichonymphae genomovar.

Microbial/511995 T Completed Candidatus Azobacteroides pseudotrichonymphae genomovar.

Microbial/513049 F Unfinished Arthrospira maxima CS-328

Microbial/513049 T Unfinished Arthrospira maxima CS-328 proteins

Microbial/515635 F Completed Dictyoglomus turgidum DSM 6724

Microbial/515635 T Completed Dictyoglomus turgidum DSM 6724 proteins

Microbial/516466 F Unfinished Burkholderia sp. H160

Microbial/516466 T Unfinished Burkholderia sp. H160 proteins

Microbial/517417 F Completed Chlorobaculum parvum NCIB 8327

Microbial/517417 T Completed Chlorobaculum parvum NCIB 8327 proteins

Microbial/517418 F Completed Chloroherpeton thalassium ATCC 35110

Microbial/517418 T Completed Chloroherpeton thalassium ATCC 35110 proteins

Microbial/518635 F Unfinished Bifidobacterium angulatum DSM 20098

Microbial/518635 T Unfinished Bifidobacterium angulatum DSM 20098 proteins

Microbial/518637 F Unfinished Eubacterium biforme DSM 3989

Microbial/520999 F Unfinished Providencia alcalifaciens DSM 30120

Microbial/520999 T Unfinished Providencia alcalifaciens DSM 30120 proteins

Microbial/521003 F Unfinished Collinsella intestinalis DSM 13280

Microbial/521003 T Unfinished Collinsella intestinalis DSM 13280 proteins

Microbial/521045 F Unfinished Thermotogales bacterium TBF 19.5.1

Microbial/521045 T Unfinished Thermotogales bacterium TBF 19.5.1 proteins

Microbial/521460 F Unfinished Anaerocellum thermophilum DSM 6725

Microbial/521460 T Unfinished Anaerocellum thermophilum DSM 6725 proteins

Microbial/523850 F Completed Thermococcus onnurineus NA1

Microbial/523850 T Completed Thermococcus onnurineus NA1 proteins

Microbial/525244 F Unfinished Acinetobacter sp. ATCC 27244

Microbial/525254 F Unfinished Anaerococcus lactolyticus ATCC 51172

Microbial/525264 F Unfinished Corynebacterium pseudogenitalium ATCC 33035

Microbial/52598 F Unfinished Sulfitobacter sp. EE-36

Microbial/52598 T Unfinished Sulfitobacter sp. EE-36 proteins

Microbial/529507 F Completed Proteus mirabilis HI4320

Microbial/529507 T Completed Proteus mirabilis HI4320 proteins

Microbial/536231 F Unfinished Roseburia intestinalis L1-82

Microbial/537006 F Unfinished Parabacteroides johnsonii DSM 18315

Microbial/537007 F Unfinished Blautia hansenii DSM 20583

Microbial/537021 F Unfinished Candidatus Liberibacter asiaticus str. psy62

Microbial/537021 T Unfinished Candidatus Liberibacter asiaticus str. psy62 proteins

Microbial/537970 F Unfinished Helicobacter canadensis MIT 98-5491

Microbial/537971 F Unfinished Helicobacter cinaedi CCUG 18818

Microbial/537972 F Unfinished Helicobacter pullorum MIT 98-5489

Microbial/537973 F Unfinished Lactobacillus paracasei subsp. paracasei 8700:2

Microbial/547043 F Unfinished Bifidobacterium pseudocatenulatum DSM 20438

Microbial/547043 T Unfinished Bifidobacterium pseudocatenulatum DSM 20438 proteins

Microbial/548477 F Unfinished Corynebacterium glucuronalyticum ATCC 51867

Microbial/552526 F Completed Streptococcus equi subsp. zooepidemicus MGCS10565

Microbial/552526 T Completed Streptococcus equi subsp. zooepidemicus MGCS10565 proteins

Microbial/553177 F Unfinished Capnocytophaga sputigena Capno

Microbial/553177 T Unfinished Capnocytophaga sputigena Capno proteins

Microbial/553204 F Unfinished Corynebacterium amycolatum SK46

Microbial/553204 T Unfinished Corynebacterium amycolatum SK46 proteins

Microbial/553973 F Unfinished Clostridium hylemonae DSM 15053

Microbial/554 F Unfinished Pectobacterium carotovorum

Microbial/557599 F Unfinished Mycobacterium kansasii ATCC 12478

Microbial/561177 F Unfinished Anaerococcus hydrogenalis DSM 7454

Microbial/561177 T Unfinished Anaerococcus hydrogenalis DSM 7454 proteins

Microbial/561180 F Unfinished Bifidobacterium gallicum DSM 20093

Microbial/561180 T Unfinished Bifidobacterium gallicum DSM 20093 proteins

Microbial/562 F Escherichia coli genomic sequences

Microbial/562 T Completed Escherichia coli proteins

Microbial/563797 F Unfinished Pseudomonas syringae pv. oryzae str. 1_6

Microbial/566461 F Unfinished Streptomyces ghanaensis ATCC 14672

Microbial/566552 F Unfinished Bifidobacterium catenulatum DSM 16992

Microbial/566552 T Unfinished Bifidobacterium catenulatum DSM 16992 proteins

Microbial/56780 F Completed Syntrophus aciditrophicus SB

Microbial/56780 T Completed Syntrophus aciditrophicus SB proteins

Microbial/573 F Completed Klebsiella pneumoniae

Microbial/573 T Completed Klebsiella pneumoniae proteins

Microbial/576610 F Completed Polynucleobacter necessarius

Microbial/576610 T Completed Polynucleobacter necessarius proteins

Microbial/57975 F Burkholderia thailandensis genomic sequences

Microbial/57975 T Completed Burkholderia thailandensis proteins

Microbial/58051 F Unfinished Moritella sp. PE36

Microbial/58051 T Unfinished Moritella sp. PE36 proteins

Microbial/59196 F Unfinished Rickettsiella grylli

Microbial/59196 T Unfinished Rickettsiella grylli proteins

Microbial/59748 F Completed Candidatus Phytoplasma australiense

Microbial/59748 T Completed Candidatus Phytoplasma australiense proteins

Microbial/59931 F Unfinished Synechococcus sp. WH 7805

Microbial/59931 T Unfinished Synechococcus sp. WH 7805 proteins

Microbial/60480 F Completed Shewanella sp. MR-4

Microbial/60480 T Completed Shewanella sp. MR-4 proteins

Microbial/60481 F Completed Shewanella sp. MR-7

Microbial/60481 T Completed Shewanella sp. MR-7 proteins

Microbial/60890 F Unfinished Phaeobacter gallaeciensis

Microbial/60890 T Unfinished Phaeobacter gallaeciensis proteins

Microbial/621 F Completed Shigella boydii

Microbial/621 T Completed Shigella boydii proteins

Microbial/622 F Shigella dysenteriae genomic sequences

Microbial/622 T Completed Shigella dysenteriae proteins

Microbial/623 F Completed Shigella flexneri

Microbial/623 T Completed Shigella flexneri proteins

Microbial/62322 F Completed Shewanella baltica

Microbial/62322 T Completed Shewanella baltica proteins

Microbial/62928 F Completed Azoarcus sp. BH72

Microbial/62928 T Completed Azoarcus sp. BH72 proteins

Microbial/62977 F Completed Acinetobacter sp. ADP1

Microbial/62977 T Completed Acinetobacter sp. ADP1 proteins

Microbial/632 F Yersinia pestis genomic sequences

Microbial/632 T Completed Yersinia pestis proteins

Microbial/633 F Completed Yersinia pseudotuberculosis

Microbial/633 T Completed Yersinia pseudotuberculosis proteins

Microbial/63737 F Completed Nostoc punctiforme PCC 73102

Microbial/63737 T Completed Nostoc punctiforme PCC 73102 proteins

Microbial/64471 F Completed Synechococcus sp. CC9311

Microbial/64471 T Completed Synechococcus sp. CC9311 proteins

Microbial/65393 F Unfinished Cyanothece sp. PCC 7424

Microbial/65393 T Unfinished Cyanothece sp. PCC 7424 proteins

Microbial/666 F Vibrio cholerae genomic sequences

Microbial/666 T Completed Vibrio cholerae proteins

Microbial/66692 F Completed Bacillus clausii KSM-K16

Microbial/66692 T Completed Bacillus clausii KSM-K16 proteins

Microbial/668 F Completed Vibrio fischeri

Microbial/668 T Completed Vibrio fischeri proteins

Microbial/669 F Vibrio harveyi genomic sequences

Microbial/669 T Completed Vibrio harveyi proteins

Microbial/670 F Vibrio parahaemolyticus genomic sequences

Microbial/670 T Completed Vibrio parahaemolyticus proteins

Microbial/672 F Completed Vibrio vulnificus

Microbial/672 T Completed Vibrio vulnificus proteins

Microbial/67294 F Unfinished Streptomyces filamentosus

Microbial/69014 F Completed Thermococcus kodakarensis KOD1

Microbial/69014 T Completed Thermococcus kodakarensis KOD1 proteins

Microbial/69042 F Unfinished Synechococcus sp. WH 5701

Microbial/69042 T Unfinished Synechococcus sp. WH 5701 proteins

Microbial/70601 F Completed Pyrococcus horikoshii OT3

Microbial/70601 T Completed Pyrococcus horikoshii OT3 proteins

Microbial/715 F Actinobacillus pleuropneumoniae genomic sequences

Microbial/715 T Completed Actinobacillus pleuropneumoniae proteins

Microbial/727 F Haemophilus influenzae genomic sequences

Microbial/727 T Completed Haemophilus influenzae proteins

Microbial/731 F Completed Histophilus somni

Microbial/731 T Completed Histophilus somni proteins

Microbial/74109 F Photobacterium profundum genomic sequences

Microbial/74109 T Completed Photobacterium profundum proteins

Microbial/76114 F Completed Aromatoleum aromaticum EbN1

Microbial/76114 T Completed Aromatoleum aromaticum EbN1 proteins

Microbial/77038 F Unfinished Wolbachia endosymbiont of Drosophila simulans

Microbial/77038 T Unfinished Wolbachia endosymbiont of Drosophila simulans proteins

Microbial/777 F Coxiella burnetii genomic sequences

Microbial/777 T Completed Coxiella burnetii proteins

Microbial/779 F Completed Ehrlichia ruminantium

Microbial/779 T Completed Ehrlichia ruminantium proteins

Microbial/78245 F Completed Xanthobacter autotrophicus Py2

Microbial/78245 T Completed Xanthobacter autotrophicus Py2 proteins

Microbial/783 F Completed Rickettsia rickettsii

Microbial/783 T Completed Rickettsia rickettsii proteins

Microbial/784 F Completed Orientia tsutsugamushi

Microbial/784 T Completed Orientia tsutsugamushi proteins

Microbial/813 F Completed Chlamydia trachomatis

Microbial/813 T Completed Chlamydia trachomatis proteins

Microbial/817 F Completed Bacteroides fragilis

Microbial/817 T Completed Bacteroides fragilis proteins

Microbial/83558 F Completed Chlamydophila pneumoniae

Microbial/83558 T Completed Chlamydophila pneumoniae proteins

Microbial/837 F Completed Porphyromonas gingivalis

Microbial/837 T Completed Porphyromonas gingivalis proteins

Microbial/84588 F Completed Synechococcus sp. WH 8102

Microbial/84588 T Completed Synechococcus sp. WH 8102 proteins

Microbial/851 F Fusobacterium nucleatum genomic sequences

Microbial/851 T Completed Fusobacterium nucleatum proteins

Microbial/85643 F Completed Thauera sp. MZ1T

Microbial/85643 T Completed Thauera sp. MZ1T proteins

Microbial/87626 F Unfinished Pseudoalteromonas tunicata D2

Microbial/87626 T Unfinished Pseudoalteromonas tunicata D2 proteins

Microbial/881 F Completed Desulfovibrio vulgaris

Microbial/881 T Completed Desulfovibrio vulgaris proteins

Microbial/89187 F Unfinished Roseovarius nubinhibens ISM

Microbial/89187 T Unfinished Roseovarius nubinhibens ISM proteins

Microbial/9 F Completed Buchnera aphidicola

Microbial/9 T Completed Buchnera aphidicola proteins

Microbial/91464 F Unfinished Synechococcus sp. PCC 7335

Microbial/94122 F Completed Shewanella sp. ANA-3

Microbial/94122 T Completed Shewanella sp. ANA-3 proteins

Microbial/945 F Ehrlichia chaffeensis genomic sequences

Microbial/945 T Completed Ehrlichia chaffeensis proteins

Microbial/95486 F Burkholderia cenocepacia genomic sequences

Microbial/95486 T Completed Burkholderia cenocepacia proteins

Microbial/96561 F Completed Desulfococcus oleovorans Hxd3

Microbial/96561 T Completed Desulfococcus oleovorans Hxd3 proteins

Microbial/99287 F Completed Salmonella typhimurium LT2

Microbial/99287 T Completed Salmonella typhimurium LT2 proteins

7.3 Databases for MetaGenomic Samples

The databases from various metagenomic or environmental samples are listed here.

Table 7.3 Databases for Metagenomic Samples

DB_DIR_PREFIX DATABASE CONTENT

gp/174633.16685/ protein Candidatus Kuenenia stuttgartiensis protein

gp/174633.16685/ scaffolds Candidatus Kuenenia stuttgartiensis scaffolds

gp/239364.16209/ AAMG_wgs_contigs human fecal virus AAMG wgs contigs

gp/239364.16209/ AAMH_wgs_contigs human fecal virus AAMH wgs contigs

gp/239364.16209/ AAMI_wgs_contigs human fecal virus AAMI wgs contigs

gp/239364.16209/ wgs_contigs all human fecal virus wgs contigs

gp/256318.13694/ AACY_wgs_contigs Sargasso Sea wgs contigs

gp/256318.13694/ protein Sargasso Sea proteins

gp/256318.13696/ AADL_wgs_contigs Acid Mine Drainage wgs contigs

gp/256318.13699/ AAFX_wgs_contigs Waseca County Farm soil wgs congts

gp/256318.13700/ AAFY_wgs_contigs Pacific whale fall AAFX wgs contigs

gp/256318.13700/ AAFZ_wgs_contigs Pacific whale fall AAFZ wgs contigs

gp/256318.13700/ AAGA_wgs_contigs Pacific whale fall AAGA wgs contigs

gp/256318.13700/ wgs_contigs whale fall wgs contigs

gp/256318.13702/ nucleotide methane-oxidizing archaea nucleotide

gp/256318.13702/ protein methane-oxidizing archaea protein

gp/256318.16339/ GSS Planktonic microbes GSS

gp/256318.16729/ AAQK_wgs_contigs Human distal gut biome AAQK wgs contigs

gp/256318.16729/ AAQL_wgs_contigs Human distal gut biome AAQL wgs contigs

gp/256318.16729/ wgs_contigs Human distal gut biome all contigs

gp/256318.17657/ AATO_wgs_contigs US EBPR sludge wgs contigs

gp/256318.17659/ AATN_wgs_contigs Australian EBPR sludge wgs contigs

gp/256318.17779/ AASZ_wgs_contigs Olavius species symbiont wgs contigs

gp/28985.12363/ 28985_genbank_prot Kluyveromyces lactis genbank protein

gp/28985.12363/ 28985_refg Kluyveromyces lactis refseq genomic

gp/28985.12363/ 28985_refm Kluyveromyces lactis refseq mrna

gp/28985.12363/ 28985_refp Kluyveromyces lactis refseq protein

8 SNP Databases

The SNP databases are available for about a dozen organisms. We provide SNPs for individual organisms as a single database, we also provide the snps grouped according to their chromosomal mapping. If the chromosomal mapping of the input query is known, it would be much faster to search chromosomal specific SNP database.

Due to the presence of repeats in the flanking sequences of the SNPs, we recommend the usage of organism specific repeat filter during the search. Use the following examples to call non-human organism specific repeat filter in URLAPI and blastcl3, respectively:

...&PROGRAM=blastn&FILTER=R+-d+repeat/repeat_7955&DATABASE=...
blastcl3 -p blastn -F "R -d repeat/repeat_7955  -i ...

For rodents, use:
&FILTER=L&FILTER=m&FILTER=R+-d+rodents.lib& in URLAPI, and
-F "m L; R -d rodents.lib" in blastcl3

For human, use:
&FILTER=L&FILTER=m&FILTER=R& in URLAPI, and
-F "m L;R" in blastcl3.

8.1 SNP Databases for Human

The SNP databases for human are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/human_9606/human_9606 -i ...
...&PROGRAM=blastn&DATABASE=snp/human_9606/human_9606&QUEYR=...

Table 8.1 SNP Databases for Human
DB_DIR_PREFIX	DATABASE	CONTENT
snp/human_9606/	human_9606	human snps
snp/human_9606/	rs_ch1.fas	human chr 1
snp/human_9606/	rs_ch10.fas	human chr 10
snp/human_9606/	rs_ch11.fas	human chr 11
snp/human_9606/	rs_ch12.fas	human chr 12
snp/human_9606/	rs_ch13.fas	human chr 13
snp/human_9606/	rs_ch14.fas	human chr 14
snp/human_9606/	rs_ch15.fas	human chr 15
snp/human_9606/	rs_ch16.fas	human chr 16
snp/human_9606/	rs_ch17.fas	human chr 17
snp/human_9606/	rs_ch18.fas	human chr 18
snp/human_9606/	rs_ch19.fas	human chr 19
snp/human_9606/	rs_ch2.fas	human chr 2
snp/human_9606/	rs_ch20.fas	human chr 20
snp/human_9606/	rs_ch21.fas	human chr 21
snp/human_9606/	rs_ch22.fas	human chr 22
snp/human_9606/	rs_ch3.fas	human chr 3
snp/human_9606/	rs_ch4.fas	human chr 4
snp/human_9606/	rs_ch5.fas	human chr 5
snp/human_9606/	rs_ch6.fas	human chr 6
snp/human_9606/	rs_ch7.fas	human chr 7
snp/human_9606/	rs_ch8.fas	human chr 8
snp/human_9606/	rs_ch9.fas	human chr 9
snp/human_9606/	rs_chMT.fas	human chr MT
snp/human_9606/	rs_chMulti.fas	human chr Multi
snp/human_9606/	rs_chNotOn.fas	human chr NotOn
snp/human_9606/	rs_chUn.fas	human chr Un
snp/human_9606/	rs_chX.fas	human chr X
snp/human_9606/	rs_chY.fas	human chr Y

8.2 SNP Databases for Chimp

The SNP databases for chimp are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/chimpanzee_9598/chimpanzee_9598 -i ...
...&PROGRAM=blastn&DATABASE=snp/chimpanzee_9598/chimpanzee_9598&QUEYR=...

Table 8.2 SNP Databases for Chimp
DB_DIR_PREFIX	DATABASE	CONTENT
snp/chimpanzee_9598/	chimpanzee_9598	all chimp snps
snp/chimpanzee_9598/	rs_ch1.fas	chimp chr 1
snp/chimpanzee_9598/	rs_ch10.fas	chimp chr 10
snp/chimpanzee_9598/	rs_ch11.fas	chimp chr 11
snp/chimpanzee_9598/	rs_ch12.fas	chimp chr 12
snp/chimpanzee_9598/	rs_ch13.fas	chimp chr 13
snp/chimpanzee_9598/	rs_ch14.fas	chimp chr 14
snp/chimpanzee_9598/	rs_ch15.fas	chimp chr 15
snp/chimpanzee_9598/	rs_ch16.fas	chimp chr 16
snp/chimpanzee_9598/	rs_ch17.fas	chimp chr 17
snp/chimpanzee_9598/	rs_ch18.fas	chimp chr 18
snp/chimpanzee_9598/	rs_ch19.fas	chimp chr 19
snp/chimpanzee_9598/	rs_ch20.fas	chimp chr 20
snp/chimpanzee_9598/	rs_ch21.fas	chimp chr 21
snp/chimpanzee_9598/	rs_ch22.fas	chimp chr 22
snp/chimpanzee_9598/	rs_ch2A.fas	chimp chr 2A
snp/chimpanzee_9598/	rs_ch2B.fas	chimp chr 2B
snp/chimpanzee_9598/	rs_ch3.fas	chimp chr 3
snp/chimpanzee_9598/	rs_ch4.fas	chimp chr 4
snp/chimpanzee_9598/	rs_ch5.fas	chimp chr 5
snp/chimpanzee_9598/	rs_ch6.fas	chimp chr 6
snp/chimpanzee_9598/	rs_ch7.fas	chimp chr 7
snp/chimpanzee_9598/	rs_ch8.fas	chimp chr 8
snp/chimpanzee_9598/	rs_ch9.fas	chimp chr 9
snp/chimpanzee_9598/	rs_chMT.fas	chimp chr MT
snp/chimpanzee_9598/	rs_chMulti.fas	chimp chr Multi
snp/chimpanzee_9598/	rs_chNotOn.fas	chimp chr NotOn
snp/chimpanzee_9598/	rs_chUn.fas	chimp chr Un
snp/chimpanzee_9598/	rs_chX.fas	chimp chr X
snp/chimpanzee_9598/	rs_chY.fas	chimp chr Y

8.3 SNP Databases for Bison

The SNP databases for bison are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/bison_9901/bison_9901 -i ...
...&PROGRAM=blastn&DATABASE=snp/bison_9901/bison_9901&QUEYR=...

Table 8.3 SNP Databases for Bison
DB_DIR_PREFIX	DATABASE	CONTENT
snp/bison_9901/	bison_9901	all bison snps
snp/bison_9901/	rs_ch1.fas	bison chr 1
snp/bison_9901/	rs_ch10.fas	bison chr 10
snp/bison_9901/	rs_ch11.fas	bison chr 11
snp/bison_9901/	rs_ch12.fas	bison chr 12
snp/bison_9901/	rs_ch13.fas	bison chr 13
snp/bison_9901/	rs_ch14.fas	bison chr 14
snp/bison_9901/	rs_ch15.fas	bison chr 15
snp/bison_9901/	rs_ch16.fas	bison chr 16
snp/bison_9901/	rs_ch17.fas	bison chr 17
snp/bison_9901/	rs_ch18.fas	bison chr 18
snp/bison_9901/	rs_ch19.fas	bison chr 19
snp/bison_9901/	rs_ch2.fas	bison chr 2
snp/bison_9901/	rs_ch20.fas	bison chr 20
snp/bison_9901/	rs_ch21.fas	bison chr 21
snp/bison_9901/	rs_ch22.fas	bison chr 22
snp/bison_9901/	rs_ch23.fas	bison chr 23
snp/bison_9901/	rs_ch24.fas	bison chr 24
snp/bison_9901/	rs_ch25.fas	bison chr 25
snp/bison_9901/	rs_ch26.fas	bison chr 26
snp/bison_9901/	rs_ch27.fas	bison chr 27
snp/bison_9901/	rs_ch28.fas	bison chr 28
snp/bison_9901/	rs_ch29.fas	bison chr 29
snp/bison_9901/	rs_ch3.fas	bison chr 3
snp/bison_9901/	rs_ch4.fas	bison chr 4
snp/bison_9901/	rs_ch5.fas	bison chr 5
snp/bison_9901/	rs_ch6.fas	bison chr 6
snp/bison_9901/	rs_ch7.fas	bison chr 7
snp/bison_9901/	rs_ch8.fas	bison chr 8

8.3 SNP Databases for Hybrid Cattle

The SNP databases for hibrid cattle are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/cow_30522/cow_30522 -i ...
...&PROGRAM=blastn&DATABASE=snp/cow_30522/cow_30522&QUEYR=...

Table 8.4 SNP Databases for Hybrid Cattle
DB_DIR_PREFIX	DATABASE	CONTENT
snp/cow_30522/	cow_30522	all hybrid cattle snps
snp/cow_30522/	rs_ch1.fas	hybrid cattle chr 1
snp/cow_30522/	rs_ch10.fas	hybrid cattle chr 10
snp/cow_30522/	rs_ch11.fas	hybrid cattle chr 11
snp/cow_30522/	rs_ch12.fas	hybrid cattle chr 12
snp/cow_30522/	rs_ch13.fas	hybrid cattle chr 13
snp/cow_30522/	rs_ch14.fas	hybrid cattle chr 14
snp/cow_30522/	rs_ch15.fas	hybrid cattle chr 15
snp/cow_30522/	rs_ch16.fas	hybrid cattle chr 16
snp/cow_30522/	rs_ch17.fas	hybrid cattle chr 17
snp/cow_30522/	rs_ch18.fas	hybrid cattle chr 18
snp/cow_30522/	rs_ch19.fas	hybrid cattle chr 19
snp/cow_30522/	rs_ch2.fas	hybrid cattle chr 2
snp/cow_30522/	rs_ch20.fas	hybrid cattle chr 20
snp/cow_30522/	rs_ch21.fas	hybrid cattle chr 21
snp/cow_30522/	rs_ch22.fas	hybrid cattle chr 22
snp/cow_30522/	rs_ch23.fas	hybrid cattle chr 23
snp/cow_30522/	rs_ch24.fas	hybrid cattle chr 24
snp/cow_30522/	rs_ch25.fas	hybrid cattle chr 25
snp/cow_30522/	rs_ch26.fas	hybrid cattle chr 26
snp/cow_30522/	rs_ch27.fas	hybrid cattle chr 27
snp/cow_30522/	rs_ch28.fas	hybrid cattle chr 28
snp/cow_30522/	rs_ch29.fas	hybrid cattle chr 29
snp/cow_30522/	rs_ch3.fas	hybrid cattle chr 3
snp/cow_30522/	rs_ch4.fas	hybrid cattle chr 4
snp/cow_30522/	rs_ch5.fas	hybrid cattle chr 5
snp/cow_30522/	rs_ch6.fas	hybrid cattle chr 6
snp/cow_30522/	rs_ch7.fas	hybrid cattle chr 7
snp/cow_30522/	rs_ch8.fas	hybrid cattle chr 8
snp/cow_30522/	rs_ch9.fas	hybrid cattle chr 9
snp/cow_30522/	rs_chMT.fas	hybrid cattle chr MT
snp/cow_30522/	rs_chMulti.fas	hybrid cattle chr Multi
snp/cow_30522/	rs_chNotOn.fas	hybrid cattle chr NotOn
snp/cow_30522/	rs_chUn.fas	hybrid cattle chr Un
snp/cow_30522/	rs_chX.fas	hybrid cattle chr X

8.4 SNP Databases for Cow

The SNP databases for cow are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/cow_9913/cow_9913 -i ...
...&PROGRAM=blastn&DATABASE=snp/cow_9913/cow_9913&QUEYR=...

Table 8.4 SNP Databases for Cow
DB_DIR_PREFIX	DATABASE	CONTENT
snp/cow_9913/	cow_9913	all cow snps
snp/cow_9913/	rs_ch1.fas	cow chr 1
snp/cow_9913/	rs_ch10.fas	cow chr 10
snp/cow_9913/	rs_ch11.fas	cow chr 11
snp/cow_9913/	rs_ch12.fas	cow chr 12
snp/cow_9913/	rs_ch13.fas	cow chr 13
snp/cow_9913/	rs_ch14.fas	cow chr 14
snp/cow_9913/	rs_ch15.fas	cow chr 15
snp/cow_9913/	rs_ch16.fas	cow chr 16
snp/cow_9913/	rs_ch17.fas	cow chr 17
snp/cow_9913/	rs_ch18.fas	cow chr 18
snp/cow_9913/	rs_ch19.fas	cow chr 19
snp/cow_9913/	rs_ch2.fas	cow chr 2
snp/cow_9913/	rs_ch20.fas	cow chr 20
snp/cow_9913/	rs_ch21.fas	cow chr 21
snp/cow_9913/	rs_ch22.fas	cow chr 22
snp/cow_9913/	rs_ch23.fas	cow chr 23
snp/cow_9913/	rs_ch24.fas	cow chr 24
snp/cow_9913/	rs_ch25.fas	cow chr 25
snp/cow_9913/	rs_ch26.fas	cow chr 26
snp/cow_9913/	rs_ch27.fas	cow chr 27
snp/cow_9913/	rs_ch28.fas	cow chr 28
snp/cow_9913/	rs_ch29.fas	cow chr 29
snp/cow_9913/	rs_ch3.fas	cow chr 3
snp/cow_9913/	rs_ch4.fas	cow chr 4
snp/cow_9913/	rs_ch5.fas	cow chr 5
snp/cow_9913/	rs_ch6.fas	cow chr 6
snp/cow_9913/	rs_ch7.fas	cow chr 7
snp/cow_9913/	rs_ch8.fas	cow chr 8
snp/cow_9913/	rs_ch9.fas	cow chr 9
snp/cow_9913/	rs_chMT.fas	cow chr MT
snp/cow_9913/	rs_chMulti.fas	cow chr Multi
snp/cow_9913/	rs_chNotOn.fas	cow chr NotOn
snp/cow_9913/	rs_chUn.fas	cow chr Un
snp/cow_9913/	rs_chX.fas	cow chr X

8.5 SNP Databases for Rat

The SNP databases for rat are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/rat_10116/rat_10116 -i ...
...&PROGRAM=blastn&DATABASE=snp/rat_10116/rat_10116&QUEYR=...

Table 8.5 SNP Databases for Rat
DB_DIR_PREFIX	DATABASE	CONTENT
snp/rat_10116/	rat_10116	rat_10116
snp/rat_10116/	rs_ch1.fas	rat chr 1
snp/rat_10116/	rs_ch10.fas	rat chr 10
snp/rat_10116/	rs_ch11.fas	rat chr 11
snp/rat_10116/	rs_ch12.fas	rat chr 12
snp/rat_10116/	rs_ch13.fas	rat chr 13
snp/rat_10116/	rs_ch14.fas	rat chr 14
snp/rat_10116/	rs_ch15.fas	rat chr 15
snp/rat_10116/	rs_ch16.fas	rat chr 16
snp/rat_10116/	rs_ch17.fas	rat chr 17
snp/rat_10116/	rs_ch18.fas	rat chr 18
snp/rat_10116/	rs_ch19.fas	rat chr 19
snp/rat_10116/	rs_ch2.fas	rat chr 2
snp/rat_10116/	rs_ch20.fas	rat chr 20
snp/rat_10116/	rs_ch3.fas	rat chr 3
snp/rat_10116/	rs_ch4.fas	rat chr 4
snp/rat_10116/	rs_ch5.fas	rat chr 5
snp/rat_10116/	rs_ch6.fas	rat chr 6
snp/rat_10116/	rs_ch7.fas	rat chr 7
snp/rat_10116/	rs_ch8.fas	rat chr 8
snp/rat_10116/	rs_ch9.fas	rat chr 9
snp/rat_10116/	rs_chMulti.fas	rat chr Multi
snp/rat_10116/	rs_chNotOn.fas	rat chr NotOn
snp/rat_10116/	rs_chUn.fas	rat chr Un
snp/rat_10116/	rs_chX.fas	rat chr X

8.6 SNP Databases for Mouse

The SNP databases for mouse are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/mouse_10090/mouse_10090 -i ...
...&PROGRAM=blastn&DATABASE=snp/mouse_10090/mouse_10090&QUEYR=...

Table 8.6 SNP Databases for Mouse
DB_DIR_PREFIX	DATABASE	CONTENT
snp/mouse_10090/	mouse_10090	all mouse snps
snp/mouse_10090/	rs_ch1.fas	mouse chr1
snp/mouse_10090/	rs_ch10.fas	mouse chr10
snp/mouse_10090/	rs_ch11.fas	mouse chr11
snp/mouse_10090/	rs_ch12.fas	mouse chr12
snp/mouse_10090/	rs_ch13.fas	mouse chr13
snp/mouse_10090/	rs_ch14.fas	mouse chr14
snp/mouse_10090/	rs_ch15.fas	mouse chr15
snp/mouse_10090/	rs_ch16.fas	mouse chr16
snp/mouse_10090/	rs_ch17.fas	mouse chr17
snp/mouse_10090/	rs_ch18.fas	mouse chr18
snp/mouse_10090/	rs_ch19.fas	mouse chr19
snp/mouse_10090/	rs_ch2.fas	mouse chr2
snp/mouse_10090/	rs_ch3.fas	mouse chr3
snp/mouse_10090/	rs_ch4.fas	mouse chr4
snp/mouse_10090/	rs_ch5.fas	mouse chr5
snp/mouse_10090/	rs_ch6.fas	mouse chr6
snp/mouse_10090/	rs_ch7.fas	mouse chr7
snp/mouse_10090/	rs_ch8.fas	mouse chr8
snp/mouse_10090/	rs_ch9.fas	mouse chr9
snp/mouse_10090/	rs_chMT.fas	mouse chrMT
snp/mouse_10090/	rs_chMulti.fas	mouse chrMulti
snp/mouse_10090/	rs_chNotOn.fas	mouse chrNotOn
snp/mouse_10090/	rs_chUn.fas	mouse chrUn
snp/mouse_10090/	rs_chX.fas	mouse chrX
snp/mouse_10090/	rs_chY.fas	mouse chrY

8.7 SNP Databases for Dog

The SNP databases for dog are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/dog_9615/dog_9615 -i ...
...&PROGRAM=blastn&DATABASE=snp/dog_9615/dog_9615&QUEYR=...

Table 8.7 SNP Databases for Dog
DB_DIR_PREFIX	DATABASE	CONTENT
snp/dog_9615/	dog_9615	all dog snps
snp/dog_9615/	rs_ch1.fas	dog chr 1
snp/dog_9615/	rs_ch10.fas	dog chr 10
snp/dog_9615/	rs_ch11.fas	dog chr 11
snp/dog_9615/	rs_ch12.fas	dog chr 12
snp/dog_9615/	rs_ch13.fas	dog chr 13
snp/dog_9615/	rs_ch14.fas	dog chr 14
snp/dog_9615/	rs_ch15.fas	dog chr 15
snp/dog_9615/	rs_ch16.fas	dog chr 16
snp/dog_9615/	rs_ch17.fas	dog chr 17
snp/dog_9615/	rs_ch18.fas	dog chr 18
snp/dog_9615/	rs_ch19.fas	dog chr 19
snp/dog_9615/	rs_ch2.fas	dog chr 2
snp/dog_9615/	rs_ch20.fas	dog chr 20
snp/dog_9615/	rs_ch21.fas	dog chr 21
snp/dog_9615/	rs_ch22.fas	dog chr 22
snp/dog_9615/	rs_ch23.fas	dog chr 23
snp/dog_9615/	rs_ch24.fas	dog chr 24
snp/dog_9615/	rs_ch25.fas	dog chr 25
snp/dog_9615/	rs_ch26.fas	dog chr 26
snp/dog_9615/	rs_ch27.fas	dog chr 27
snp/dog_9615/	rs_ch28.fas	dog chr 28
snp/dog_9615/	rs_ch29.fas	dog chr 29
snp/dog_9615/	rs_ch3.fas	dog chr 3
snp/dog_9615/	rs_ch30.fas	dog chr 30
snp/dog_9615/	rs_ch31.fas	dog chr 31
snp/dog_9615/	rs_ch32.fas	dog chr 32
snp/dog_9615/	rs_ch33.fas	dog chr 33
snp/dog_9615/	rs_ch34.fas	dog chr 34
snp/dog_9615/	rs_ch35.fas	dog chr 35
snp/dog_9615/	rs_ch36.fas	dog chr 36
snp/dog_9615/	rs_ch37.fas	dog chr 37
snp/dog_9615/	rs_ch38.fas	dog chr 38
snp/dog_9615/	rs_ch4.fas	dog chr 4
snp/dog_9615/	rs_ch5.fas	dog chr 5
snp/dog_9615/	rs_ch6.fas	dog chr 6
snp/dog_9615/	rs_ch7.fas	dog chr 7
snp/dog_9615/	rs_ch8.fas	dog chr 8
snp/dog_9615/	rs_ch9.fas	dog chr 9
snp/dog_9615/	rs_chMT.fas	dog chr MT
snp/dog_9615/	rs_chMulti.fas	dog chr Multi
snp/dog_9615/	rs_chNotOn.fas	dog chr NotOn
snp/dog_9615/	rs_chUn.fas	dog chr Un
snp/dog_9615/	rs_chX.fas	dog chr X

8.8 SNP Databases for chicken

SNP databases for chicken are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/chicken_9031/chicken_9031 -i ...
...&PROGRAM=blastn&DATABASE=snp/chicken_9031/chicken_9031&QUEYR=...

Table 8.8 SNP Databases for Chicken
DB_DIR_PREFIX	DATABASE	CONTENT
snp/chicken_9031/	chicken_9031	all chicken snps
snp/chicken_9031/	rs_ch1.fas	chicken chr 1
snp/chicken_9031/	rs_ch10.fas	chicken chr 10
snp/chicken_9031/	rs_ch11.fas	chicken chr 11
snp/chicken_9031/	rs_ch12.fas	chicken chr 12
snp/chicken_9031/	rs_ch13.fas	chicken chr 13
snp/chicken_9031/	rs_ch14.fas	chicken chr 14
snp/chicken_9031/	rs_ch15.fas	chicken chr 15
snp/chicken_9031/	rs_ch16.fas	chicken chr 16
snp/chicken_9031/	rs_ch17.fas	chicken chr 17
snp/chicken_9031/	rs_ch18.fas	chicken chr 18
snp/chicken_9031/	rs_ch19.fas	chicken chr 19
snp/chicken_9031/	rs_ch2.fas	chicken chr 2
snp/chicken_9031/	rs_ch20.fas	chicken chr 20
snp/chicken_9031/	rs_ch21.fas	chicken chr 21
snp/chicken_9031/	rs_ch22.fas	chicken chr 22
snp/chicken_9031/	rs_ch23.fas	chicken chr 23
snp/chicken_9031/	rs_ch24.fas	chicken chr 24
snp/chicken_9031/	rs_ch26.fas	chicken chr 26
snp/chicken_9031/	rs_ch27.fas	chicken chr 27
snp/chicken_9031/	rs_ch28.fas	chicken chr 28
snp/chicken_9031/	rs_ch3.fas	chicken chr 3
snp/chicken_9031/	rs_ch32.fas	chicken chr 32
snp/chicken_9031/	rs_ch4.fas	chicken chr 4
snp/chicken_9031/	rs_ch5.fas	chicken chr 5
snp/chicken_9031/	rs_ch6.fas	chicken chr 6
snp/chicken_9031/	rs_ch7.fas	chicken chr 7
snp/chicken_9031/	rs_ch8.fas	chicken chr 8
snp/chicken_9031/	rs_ch9.fas	chicken chr 9
snp/chicken_9031/	rs_chLGE22C19W28.fas	chicken chr LGE22C19W28
snp/chicken_9031/	rs_chLGE26C13.fas	chicken chr LGE26C13
snp/chicken_9031/	rs_chLGE50C23.fas	chicken chr LGE50C23
snp/chicken_9031/	rs_chLGE64.fas	chicken chr LGE64
snp/chicken_9031/	rs_chMT.fas	chicken chr MT
snp/chicken_9031/	rs_chMulti.fas	chicken chr Multi
snp/chicken_9031/	rs_chNotOn.fas	chicken chr NotOn
snp/chicken_9031/	rs_chUn.fas	chicken chr Un
snp/chicken_9031/	rs_chW.fas	chicken chr W
snp/chicken_9031/	rs_chZ.fas	chicken chr Z

8.9 SNP Databases for Zebrafish

SNP databases for Zebrafish are listed in the table below, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/zebrafish_7955/zebrafish_7955 -i ...
...&PROGRAM=blastn&DATABASE=snp/zebrafish_7955/zebrafish_7955&QUEYR=...

Table 8.9 SNP Databases for Zebrafish
DB_DIR_PREFIX	DATABASE	CONTENT
snp/zebrafish_7955/	rs_ch1.fas	zebrafish chr1
snp/zebrafish_7955/	rs_ch10.fas	zebrafish chr10
snp/zebrafish_7955/	rs_ch11.fas	zebrafish chr11
snp/zebrafish_7955/	rs_ch12.fas	zebrafish chr12
snp/zebrafish_7955/	rs_ch13.fas	zebrafish chr13
snp/zebrafish_7955/	rs_ch14.fas	zebrafish chr14
snp/zebrafish_7955/	rs_ch15.fas	zebrafish chr15
snp/zebrafish_7955/	rs_ch16.fas	zebrafish chr16
snp/zebrafish_7955/	rs_ch17.fas	zebrafish chr17
snp/zebrafish_7955/	rs_ch18.fas	zebrafish chr18
snp/zebrafish_7955/	rs_ch19.fas	zebrafish chr19
snp/zebrafish_7955/	rs_ch2.fas	zebrafish chr2
snp/zebrafish_7955/	rs_ch20.fas	zebrafish chr20
snp/zebrafish_7955/	rs_ch21.fas	zebrafish chr21
snp/zebrafish_7955/	rs_ch22.fas	zebrafish chr22
snp/zebrafish_7955/	rs_ch23.fas	zebrafish chr23
snp/zebrafish_7955/	rs_ch24.fas	zebrafish chr24
snp/zebrafish_7955/	rs_ch25.fas	zebrafish chr25
snp/zebrafish_7955/	rs_ch3.fas	zebrafish chr3
snp/zebrafish_7955/	rs_ch4.fas	zebrafish chr4
snp/zebrafish_7955/	rs_ch5.fas	zebrafish chr5
snp/zebrafish_7955/	rs_ch6.fas	zebrafish chr6
snp/zebrafish_7955/	rs_ch7.fas	zebrafish chr7
snp/zebrafish_7955/	rs_ch8.fas	zebrafish chr8
snp/zebrafish_7955/	rs_ch9.fas	zebrafish chr9
snp/zebrafish_7955/	rs_chMT.fas	zebrafish chrMT
snp/zebrafish_7955/	rs_chMulti.fas	zebrafish chrMulti
snp/zebrafish_7955/	rs_chNotOn.fas	zebrafish chrNotOn
snp/zebrafish_7955/	rs_chUn.fas	zebrafish chrUn
snp/zebrafish_7955/	zebrafish_7955	all zebrafish snps

8.10 SNP Databases for Other Organisms

The SNP databases for other organisms listed here include those for mosquitos, honey bee, nematodes, and rice, where MT = mitochondrion; Multi = on multiple chromosomes; NotOn = not mapped to any chromosomes in current genome build; and Un = matched to unplaced or unmapped chromosome contigs.

Use the following examples to call the database in blastcl3 and URLAPI, respectively:

blastcl3 -p blastn -d snp/mosquito_7165/mosquito_7165 -i ...
...&PROGRAM=blastn&DATABASE=snp/mosquito_7165/mosquito_7165&QUEYR=...

Table 8.10 Other SNP Databases
DB_DIR_PREFIX	DATABASE	CONTENT
snp/mosquito_7165/	mosquito_7165	all mosquito (anepholes) snps
snp/mosquito_7165/	rs_ch2.fas	rs_ch2.fas
snp/mosquito_7165/	rs_ch3.fas	rs_ch3.fas
snp/mosquito_7165/	rs_chMulti.fas	rs_chMulti.fas
snp/mosquito_7165/	rs_chNotOn.fas	rs_chNotOn.fas
snp/mosquito_7165/	rs_chUn.fas	rs_chUn.fas
snp/mosquito_7165/	rs_chX.fas	rs_chX.fas
snp/nematode_6239/	nematode_6239	nematode snps
snp/nematode_6239/	rs_chI.fas	nematode chr I
snp/nematode_6239/	rs_chII.fas	nematode chr II
snp/nematode_6239/	rs_chIII.fas	nematode chr III
snp/nematode_6239/	rs_chIV.fas	nematode chr IV
snp/nematode_6239/	rs_chMulti.fas	nematode chr Multi
snp/nematode_6239/	rs_chNotOn.fas	nematode chr NotOn
snp/nematode_6239/	rs_chUn.fas	nematode chr Un
snp/nematode_6239/	rs_chV.fas	nematode chr V
snp/nematode_6239/	rs_chX.fas	nematode chr X
snp/opossum_13616/	opossum_13616	all Opossum SNPs
snp/opossum_13616/	rs_ch1.fas	chr 1 SNPs
snp/opossum_13616/	rs_ch2.fas	chr 2 SNPs
snp/opossum_13616/	rs_ch3.fas	chr 3 SNPs
snp/opossum_13616/	rs_ch4.fas	chr 4 SNPs
snp/opossum_13616/	rs_ch5.fas	chr 5 SNPs
snp/opossum_13616/	rs_ch6.fas	chr 6 SNPs
snp/opossum_13616/	rs_ch7.fas	chr 7 SNPs
snp/opossum_13616/	rs_ch8.fas	chr 8 SNPs
snp/opossum_13616/	rs_chMulti.fas	SNPs mapped to multiple chr
snp/opossum_13616/	rs_chNotOn.fas	SNPs not mapped at all
snp/opossum_13616/	rs_chUn.fas	SNPs mapped to unplaced contigs
snp/opossum_13616/	rs_chX.fas	chr X SNPs
snp/bee_7460/	bee_7460	All honeybee SNPs
snp/bee_7460/	rs_chLG1.fas	Chr LG1 honeybee SNPs
snp/bee_7460/	rs_chLG10.fas	Chr LG10 honeybee SNPs
snp/bee_7460/	rs_chLG11.fas	Chr LG11 honeybee SNPs
snp/bee_7460/	rs_chLG12.fas	Chr LG12 honeybee SNPs
snp/bee_7460/	rs_chLG13.fas	Chr LG13 honeybee SNPs
snp/bee_7460/	rs_chLG14.fas	Chr LG14 honeybee SNPs
snp/bee_7460/	rs_chLG15.fas	Chr LG15 honeybee SNPs
snp/bee_7460/	rs_chLG16.fas	Chr LG16 honeybee SNPs
snp/bee_7460/	rs_chLG2.fas	Chr LG2 honeybee SNPs
snp/bee_7460/	rs_chLG3.fas	Chr LG3 honeybee SNPs
snp/bee_7460/	rs_chLG4.fas	Chr LG4 honeybee SNPs
snp/bee_7460/	rs_chLG5.fas	Chr LG5 honeybee SNPs
snp/bee_7460/	rs_chLG6.fas	Chr LG6 honeybee SNPs
snp/bee_7460/	rs_chLG7.fas	Chr LG7 honeybee SNPs
snp/bee_7460/	rs_chLG8.fas	Chr LG8 honeybee SNPs
snp/bee_7460/	rs_chLG9.fas	Chr LG9 honeybee SNPs
snp/bee_7460/	rs_chLGUn.fas	SNPs mapped unplaced contigs
snp/bee_7460/	rs_chMT.fas	mitochondrial SNPs
snp/bee_7460/	rs_chMulti.fas	SNPs mapped to multiple chr
snp/bee_7460/	rs_chNotOn.fas	SNPs not mapped at all
snp/macaque_9544/	macaque_9544	All Macaca SNPs
snp/macaque_9544/	rs_ch1.fas	chr 1 SNPs
snp/macaque_9544/	rs_ch10.fas	chr 10 SNPs
snp/macaque_9544/	rs_ch11.fas	chr 11 SNPs
snp/macaque_9544/	rs_ch12.fas	chr 12 SNPs
snp/macaque_9544/	rs_ch13.fas	chr 13 SNPs
snp/macaque_9544/	rs_ch14.fas	chr 14 SNPs
snp/macaque_9544/	rs_ch15.fas	chr 15 SNPs
snp/macaque_9544/	rs_ch16.fas	chr 16 SNPs
snp/macaque_9544/	rs_ch17.fas	chr 17 SNPs
snp/macaque_9544/	rs_ch18.fas	chr 18 SNPs
snp/macaque_9544/	rs_ch19.fas	chr 19 SNPs
snp/macaque_9544/	rs_ch2.fas	chr 2 SNPs
snp/macaque_9544/	rs_ch20.fas	chr 20 SNPs
snp/macaque_9544/	rs_ch3.fas	chr 3 SNPs
snp/macaque_9544/	rs_ch4.fas	chr 4 SNPs
snp/macaque_9544/	rs_ch5.fas	chr 5 SNPs
snp/macaque_9544/	rs_ch6.fas	chr 6 SNPs
snp/macaque_9544/	rs_ch7.fas	chr 7 SNPs
snp/macaque_9544/	rs_ch8.fas	chr 8 SNPs
snp/macaque_9544/	rs_ch9.fas	chr 9 SNPs
snp/macaque_9544/	rs_chUn.fas	SNPs Mapped unplaced contigs
snp/macaque_9544/	rs_chX.fas	chr X SNPs
snp/rice_4530/	rice_4530	rice snps
snp/rice_4530/	rs_ch1.fas	rice chr 1
snp/rice_4530/	rs_ch10.fas	rice chr 10
snp/rice_4530/	rs_ch11.fas	rice chr 11
snp/rice_4530/	rs_ch12.fas	rice chr 12
snp/rice_4530/	rs_ch2.fas	rice chr 2
snp/rice_4530/	rs_ch3.fas	rice chr 3
snp/rice_4530/	rs_ch4.fas	rice chr 4
snp/rice_4530/	rs_ch5.fas	rice chr 5
snp/rice_4530/	rs_ch6.fas	rice chr 6
snp/rice_4530/	rs_ch7.fas	rice chr 7
snp/rice_4530/	rs_ch8.fas	rice chr 8
snp/rice_4530/	rs_ch9.fas	rice chr 9
snp/rice_4530/	rs_chMulti.fas	rice chr Multi
snp/rice_4530/	rs_chNotOn.fas	rice chr NotOn
snp/rice_4530/	rs_chPltd.fas	rice chr Pltd

9. Trace Databases

Trace database contains raw sequence data from various sequencing projects. They are not part of the official GenBank collection. This is the place to look for new sequence information. This may be the only place where an user can find substantial amount of sequence data for an organism.

The dataset is grouped according to organisms and sequence nature (EST, WGS, or OTHER). They are named using Scientific_Name_Strain_SeqType convention. We separate the available databases into a few large group according to the initial alphabet.

9.1 Trace Databases, with project ID and A to B intiails

Trace database with project ID and A to B as their initials.

Table 9.1 Trace Databases, with project ID and A to B intiails
DB_DIR_PREFIX	DATABASE
DB_DIR_PREFIX	DATABASE
Trace	13694_environmental_sequence_WGS
Trace	13729_environmental_sequence_OTHER
Trace	16209_environmental_sequence_WGS
Trace	17381_environmental_sequence_OTHER
Trace	17657_environmental_sequence_WGS
Trace	17659_environmental_sequence_WGS
Trace	17779_environmental_sequence_WGS
Trace	Acanthamoeba_castellanii_OTHER
Trace	Acanthamoeba_castellanii_WGS
Trace	Acidiphilium_cryptum_jf-5_WGS
Trace	Acidithiobacillus_ferrooxidans_atcc_23270_OTHER
Trace	Acidithiobacillus_ferrooxidans_atcc_23270_WGS
Trace	Acidobacteria_bacterium_ellin345_WGS
Trace	Acidothermus_cellulolyticus_11b_WGS
Trace	Acidovorax_avenae_subsp__citrulli_aac00-1_WGS
Trace	Acidovorax_sp__js42_WGS
Trace	Acorus_americanus_OTHER
Trace	Acropora_millepora_WGS
Trace	Acropora_palmata_WGS
Trace	Actinobacillus_succinogenes_130z_WGS
Trace	Actinomyces_odontolyticus_OTHER
Trace	Actinomyces_odontolyticus_WGS
Trace	Acyrthosiphon_pisum_WGS
Trace	Aedes_aegypti_OTHER
Trace	Aedes_aegypti_WGS
Trace	Agrobacterium_vitis_s4_OTHER
Trace	Ajellomyces_capsulatus_WGS
Trace	Alces_alces_americana_OTHER
Trace	Alces_alces_gigas_OTHER
Trace	Alkalilimnicola_ehrlichei_mlhe-1_WGS
Trace	Alkaliphilus_metalliredigenes_qymf_WGS
Trace	Alligator_mississippiensis_OTHER
Trace	Alteromonas_macleodii__deep_ecotype__WGS
Trace	Amia_calva_OTHER
Trace	Ammonifex_degensii_WGS
Trace	Anabaena_variabilis_atcc_29413_OTHER
Trace	Anabaena_variabilis_atcc_29413_WGS
Trace	Anaeromyxobacter_dehalogenans_2cp-c_WGS
Trace	Anolis_carolinensis_WGS
Trace	Anopheles_gambiae_OTHER
Trace	Anopheles_gambiae_WGS
Trace	Anopheles_gambiae_s_WGS
Trace	Antilocapra_americana_OTHER
Trace	Aotus_nancymaae_OTHER
Trace	Apis_mellifera_OTHER
Trace	Apis_mellifera_WGS
Trace	Aplysia_californica_OTHER
Trace	Aplysia_californica_WGS
Trace	Aquilegia_formosa_x_aquilegia_pubescens_EST
Trace	Arabidopsis_lyrata_subsp__lyrata_WGS
Trace	Archaeoglobus_fulgidus_dsm_4304_WGS
Trace	Arthrobacter_sp__fb24_WGS
Trace	Artibeus_jamaicensis_OTHER
Trace	Ascosphaera_apis_OTHER
Trace	Ascosphaera_apis_WGS
Trace	Aspergillus_clavatus_nrrl_1_WGS
Trace	Aspergillus_flavus_OTHER
Trace	Aspergillus_fumigatus_OTHER
Trace	Aspergillus_fumigatus_WGS
Trace	Aspergillus_nidulans_OTHER
Trace	Aspergillus_nidulans_WGS
Trace	Aspergillus_niger_atcc_1015_OTHER
Trace	Aspergillus_niger_atcc_1015_WGS
Trace	Aspergillus_parasiticus_OTHER
Trace	Aspergillus_terreus_OTHER
Trace	Aspergillus_terreus_WGS
Trace	Astyanax_mexicanus_OTHER
Trace	Atelerix_albiventris_OTHER
Trace	Ateles_geoffroyi_OTHER
Trace	Ateles_geoffroyi_WGS
Trace	Aurantimonas_sp__si85-9a1_WGS
Trace	Azotobacter_vinelandii_avop_WGS
Trace	Bacillus_anthracis_str__sterne_WGS
Trace	Bacillus_anthracis_str_a0039_OTHER
Trace	Bacillus_anthracis_str_a0039_WGS
Trace	Bacillus_anthracis_str_a01055_OTHER
Trace	Bacillus_anthracis_str_a01055_WGS
Trace	Bacillus_anthracis_str_a2012_WGS
Trace	Bacillus_anthracis_str_ames_0581_OTHER
Trace	Bacillus_anthracis_str_ames_0581_WGS
Trace	Bacillus_anthracis_str_ames_OTHER
Trace	Bacillus_anthracis_str_ames_WGS
Trace	Bacillus_anthracis_str_france_OTHER
Trace	Bacillus_anthracis_str_france_WGS
Trace	Bacillus_anthracis_str_kruger_b_OTHER
Trace	Bacillus_anthracis_str_kruger_b_WGS
Trace	Bacillus_anthracis_str_vollum_OTHER
Trace	Bacillus_anthracis_str_vollum_WGS
Trace	Bacillus_anthracis_str_western_north_america_OTHER
Trace	Bacillus_anthracis_str_western_north_america_WGS
Trace	Bacillus_cereus_ah187_OTHER
Trace	Bacillus_cereus_ah187_WGS
Trace	Bacillus_cereus_ah820_OTHER
Trace	Bacillus_cereus_ah820_WGS
Trace	Bacillus_cereus_atcc_10987_OTHER
Trace	Bacillus_cereus_atcc_10987_WGS
Trace	Bacillus_cereus_e33l_WGS
Trace	Bacillus_cereus_g9241_OTHER
Trace	Bacillus_cereus_g9241_WGS
Trace	Bacillus_cereus_subsp__cytotoxis_nvh_391-98_WGS
Trace	Bacillus_pumilus_OTHER
Trace	Bacillus_sp__nrrl_b-14911_OTHER
Trace	Bacillus_sp__nrrl_b-14911_WGS
Trace	Bacillus_thuringiensis_serovar_konkukian_str__97-27_WGS
Trace	Bacillus_weihenstephanensis_kbab4_WGS
Trace	Bacteriophage_kvp40_WGS
Trace	Bacteroides_caccae_OTHER
Trace	Bacteroides_caccae_WGS
Trace	Bacteroides_capillosus_OTHER
Trace	Bacteroides_ovatus_OTHER
Trace	Barcode_species_OTHER
Trace	Bartonella_bacilliformis_kc583_WGS
Trace	Batrachochytrium_dendrobatidis_OTHER
Trace	Batrachochytrium_dendrobatidis_WGS
Trace	Baumannia_cicadellinicola_OTHER
Trace	Baumannia_cicadellinicola_WGS
Trace	Bifidobacterium_longum_WGS
Trace	Bifidobacterium_longum_djo10a_WGS
Trace	Biomphalaria_glabrata_OTHER
Trace	Biomphalaria_glabrata_WGS
Trace	Bison_bison_OTHER
Trace	Bison_bison_WGS
Trace	Blastopirellula_marina_dsm_3645_WGS
Trace	Borrelia_burgdorferi_b31_OTHER
Trace	Borrelia_burgdorferi_b31_WGS
Trace	Borrelia_garinii_pbi_WGS
Trace	Bos_gaurus_OTHER
Trace	Bos_taurus_EST
Trace	Bos_taurus_OTHER
Trace	Bos_taurus_WGS
Trace	Botryllus_schlosseri_OTHER
Trace	Botryotinia_fuckeliana_WGS
Trace	Bradyrhizobium_sp__btai1_WGS
Trace	Branchiostoma_floridae_OTHER
Trace	Branchiostoma_floridae_WGS
Trace	Brassica_oleracea_WGS
Trace	Brevibacterium_linens_bl2_WGS
Trace	Brucella_suis_1330_OTHER
Trace	Brucella_suis_1330_WGS
Trace	Brugia_malayi_OTHER
Trace	Brugia_malayi_WGS
Trace	Bubalus_bubalis_OTHER
Trace	Burkholderia_ambifaria_ammd_WGS
Trace	Burkholderia_cenocepacia_WGS
Trace	Burkholderia_cenocepacia_au_1054_WGS
Trace	Burkholderia_cenocepacia_hi2424_WGS
Trace	Burkholderia_cepacia_r1808_WGS
Trace	Burkholderia_cepacia_r18194_WGS
Trace	Burkholderia_dolosa_WGS
Trace	Burkholderia_fungorum_lb400_WGS
Trace	Burkholderia_mallei_10229_OTHER
Trace	Burkholderia_mallei_10229_WGS
Trace	Burkholderia_mallei_10399_WGS
Trace	Burkholderia_mallei_2002721280_WGS
Trace	Burkholderia_mallei_atcc_23344_OTHER
Trace	Burkholderia_mallei_atcc_23344_WGS
Trace	Burkholderia_mallei_fmh_WGS
Trace	Burkholderia_mallei_gb8_horse_4_WGS
Trace	Burkholderia_mallei_jhu_WGS
Trace	Burkholderia_mallei_nctc_10247_WGS
Trace	Burkholderia_mallei_savp1_OTHER
Trace	Burkholderia_mallei_savp1_WGS
Trace	Burkholderia_phymatum_stm815_WGS
Trace	Burkholderia_phytofirmans_psjn_WGS
Trace	Burkholderia_pseudomallei_1106a_OTHER
Trace	Burkholderia_pseudomallei_1106a_WGS
Trace	Burkholderia_pseudomallei_1106b_WGS
Trace	Burkholderia_pseudomallei_1655_WGS
Trace	Burkholderia_pseudomallei_1710a_WGS
Trace	Burkholderia_pseudomallei_1710b_OTHER
Trace	Burkholderia_pseudomallei_1710b_WGS
Trace	Burkholderia_pseudomallei_406e_WGS
Trace	Burkholderia_pseudomallei_668_WGS
Trace	Burkholderia_pseudomallei_bacteriophage__phi52237_WGS
Trace	Burkholderia_pseudomallei_pasteur_WGS
Trace	Burkholderia_pseudomallei_phage_644-2_OTHER
Trace	Burkholderia_pseudomallei_phage_644-2_WGS
Trace	Burkholderia_pseudomallei_phage_e12-2_OTHER
Trace	Burkholderia_pseudomallei_phage_e12-2_WGS
Trace	Burkholderia_pseudomallei_s13_WGS
Trace	Burkholderia_thailandensis_e264_WGS
Trace	Burkholderia_thailandensis_phage_e202_WGS
Trace	Burkholderia_thailandensis_phage_e255_WGS

9.2 Trace Databases: with C and D initials

Trace database with C and D initials.

Table 9.2 Trace Databases: with C and D initials

DB_DIR_PREFIX DATABASE

Trace Caenorhabditis_briggsae_OTHER

Trace Caenorhabditis_briggsae_WGS

Trace Caenorhabditis_elegans_OTHER

Trace Caenorhabditis_japonica_EST

Trace Caenorhabditis_japonica_OTHER

Trace Caenorhabditis_japonica_WGS

Trace Caenorhabditis_remanei_EST

Trace Caenorhabditis_remanei_OTHER

Trace Caenorhabditis_remanei_WGS

Trace Caenorhabditis_sp__4__ce-ii__OTHER

Trace Caenorhabditis_sp__4__ce-ii__WGS

Trace Caldicellulosiruptor_saccharolyticus_dsm_8903_OTHER

Trace Caldicellulosiruptor_saccharolyticus_dsm_8903_WGS

Trace Callicebus_moloch_OTHER

Trace Callithrix_jacchus_OTHER

Trace Callithrix_jacchus_WGS

Trace Campylobacter_coli_rm2228_WGS

Trace Campylobacter_concisus_13826_WGS

Trace Campylobacter_curvus_525_92_WGS

Trace Campylobacter_fetus_subsp__fetus_82-40_OTHER

Trace Campylobacter_fetus_subsp__fetus_82-40_WGS

Trace Campylobacter_jejuni_rm1221_OTHER

Trace Campylobacter_jejuni_rm1221_WGS

Trace Campylobacter_jejuni_subsp__doylei_269_97_WGS

Trace Campylobacter_jejuni_subsp__jejuni_260_94_WGS

Trace Campylobacter_jejuni_subsp__jejuni_81-176_WGS

Trace Campylobacter_jejuni_subsp__jejuni_84-25_WGS

Trace Campylobacter_jejuni_subsp__jejuni_cf93-6_WGS

Trace Campylobacter_jejuni_subsp__jejuni_hb93-13_WGS

Trace Campylobacter_lari_rm2100_WGS

Trace Campylobacter_upsaliensis_rm3195_WGS

Trace Candida_albicans_WGS

Trace Candida_oleophila_WGS

Trace Candida_parapsilosis_WGS

Trace Candida_sojae_WGS

Trace Candida_tropicalis_WGS

Trace Candidatus_pelagibacter_ubique_WGS

Trace Candidatus_pelagibacter_ubique_htcc1002_WGS

Trace Canis_familiaris_OTHER

Trace Canis_familiaris_WGS

Trace Canis_latrans_WGS

Trace Canis_lupus_WGS

Trace Capitella_sp__i_ecs-2004_WGS

Trace Capra_hircus_OTHER

Trace Carboxydothermus_hydrogenoformans_z-2901_OTHER

Trace Carboxydothermus_hydrogenoformans_z-2901_WGS

Trace Carollia_perspicillata_OTHER

Trace Caulobacter_sp__k31_WGS

Trace Cavia_porcellus_OTHER

Trace Cavia_porcellus_WGS

Trace Cellulophaga_sp__med134_WGS

Trace Ceratopteris_richardii_OTHER

Trace Cercopithecus_aethiops_OTHER

Trace Cerebratulus_lacteus_OTHER

Trace Cervus_elaphus_OTHER

Trace Cervus_elaphus_nelsoni_OTHER

Trace Chaenocephalus_aceratus_OTHER

Trace Chaetomium_globosum_WGS

Trace Chara_braunii_OTHER

Trace Chlamydia_muridarum_nigg_OTHER

Trace Chlamydia_muridarum_nigg_WGS

Trace Chlamydomonas_reinhardtii_EST

Trace Chlamydomonas_reinhardtii_OTHER

Trace Chlamydomonas_reinhardtii_WGS

Trace Chlamydophila_caviae_gpic_OTHER

Trace Chlamydophila_caviae_gpic_WGS

Trace Chlamydophila_pneumoniae_ar39_OTHER

Trace Chlorella_virus_ar158_WGS

Trace Chlorella_virus_mt325_OTHER

Trace Chlorella_virus_mt325_WGS

Trace Chlorobium_chlorochromatii_cad3_WGS

Trace Chlorobium_ferrooxidans_dsm_13031_WGS

Trace Chlorobium_limicola_dsm_245_WGS

Trace Chlorobium_phaeobacteroides_bs1_WGS

Trace Chlorobium_phaeobacteroides_dsm_266_WGS

Trace Chlorobium_tepidum_tls_OTHER

Trace Chlorobium_tepidum_tls_WGS

Trace Chloroflexus_aggregans_dsm_9485_OTHER

Trace Chloroflexus_aggregans_dsm_9485_WGS

Trace Chloroflexus_aurantiacus_j-10-fl_WGS

Trace Choloepus_hoffmanni_WGS

Trace Chromohalobacter_salexigens_dsm_3043_WGS

Trace Chrysemys_picta_OTHER

Trace Cicer_arietinum_OTHER

Trace Ciona_intestinalis_WGS

Trace Ciona_savignyi_OTHER

Trace Ciona_savignyi_WGS

Trace Citrobacter_koseri_WGS

Trace Clavispora_lusitaniae_WGS

Trace Clostridium_bolteae_OTHER

Trace Clostridium_bolteae_WGS

Trace Clostridium_difficile_OTHER

Trace Clostridium_perfringens_atcc_13124_OTHER

Trace Clostridium_perfringens_atcc_13124_WGS

Trace Clostridium_perfringens_sm101_OTHER

Trace Clostridium_perfringens_sm101_WGS

Trace Clostridium_phytofermentans_isdg_WGS

Trace Clostridium_scindens_OTHER

Trace Clostridium_sp__ohilas_OTHER

Trace Clostridium_sp__ohilas_WGS

Trace Clostridium_symbiosum_OTHER

Trace Clostridium_thermocellum_atcc_27405_WGS

Trace Coccidioides_immitis_OTHER

Trace Coccidioides_immitis_WGS

Trace Coccidioides_posadasii_OTHER

Trace Coccidioides_posadasii_WGS

Trace Coleochaete_orbicularis_OTHER

Trace Collinsella_aerofaciens_OTHER

Trace Collinsella_aerofaciens_WGS

Trace Colobus_guereza_OTHER

Trace Colwellia_psychrerythraea_34h_OTHER

Trace Colwellia_psychrerythraea_34h_WGS

Trace Comamonas_testosteroni_kf-1_OTHER

Trace Comamonas_testosteroni_kf-1_WGS

Trace Copadichromis_conophorus_WGS

Trace Coprinus_cinereus_WGS

Trace Coprococcus_eutactus_OTHER

Trace Coxiella_burnetii__msu_goat_q177__OTHER

Trace Coxiella_burnetii__msu_goat_q177__WGS

Trace Coxiella_burnetii_dugway_7e9-12_OTHER

Trace Coxiella_burnetii_dugway_7e9-12_WGS

Trace Coxiella_burnetii_rsa_331_WGS

Trace Coxiella_burnetii_rsa_493_OTHER

Trace Coxiella_burnetii_rsa_493_WGS

Trace Crocosphaera_watsonii_wh_8501_WGS

Trace Cryptococcus_neoformans_serotype_a_OTHER

Trace Cryptococcus_neoformans_serotype_a_WGS

Trace Cryptococcus_neoformans_var__neoformans_jec21_WGS

Trace Cryptosporidium_hominis_OTHER

Trace Culex_pipiens_quinquefasciatus_OTHER

Trace Culex_pipiens_quinquefasciatus_WGS

Trace Cytophaga_hutchinsonii_atcc_33406_WGS

Trace Dama_dama_OTHER

Trace Danio_rerio_EST

Trace Danio_rerio_OTHER

Trace Danio_rerio_WGS

Trace Daphnia_pulex_WGS

Trace Dasypus_novemcinctus_OTHER

Trace Dasypus_novemcinctus_WGS

Trace Dechloromonas_aromatica_rcb_OTHER

Trace Dechloromonas_aromatica_rcb_WGS

Trace Dehalococcoides_ethenogenes_195_OTHER

Trace Dehalococcoides_ethenogenes_195_WGS

Trace Dehalococcoides_sp__bav1_WGS

Trace Deinococcus_geothermalis_dsm_11300_WGS

Trace Delta_proteobacterium_mlms-1_WGS

Trace Desulfitobacterium_hafniense_dcb-2_WGS

Trace Desulfotomaculum_reducens_mi-1_WGS

Trace Desulfovibrio_desulfuricans_g20_WGS

Trace Desulfovibrio_vulgaris_subsp__vulgaris_dp4_WGS

Trace Desulfuromonas_acetoxidans_dsm_684_WGS

Trace Didelphis_virginiana_OTHER

Trace Dipodomys_ordii_WGS

Trace Dorea_formicigenerans_OTHER

Trace Dorea_formicigenerans_WGS

Trace Dorea_longicatena_OTHER

Trace Dorea_longicatena_WGS

Trace Dromaius_novaehollandiae_OTHER

Trace Drosophila_ananassae_EST

Trace Drosophila_ananassae_OTHER

Trace Drosophila_ananassae_WGS

Trace Drosophila_erecta_EST

Trace Drosophila_erecta_WGS

Trace Drosophila_grimshawi_EST

Trace Drosophila_grimshawi_WGS

Trace Drosophila_mauritiana_OTHER

Trace Drosophila_melanogaster_OTHER

Trace Drosophila_mojavensis_EST

Trace Drosophila_mojavensis_WGS

Trace Drosophila_persimilis_WGS

Trace Drosophila_pseudoobscura_EST

Trace Drosophila_pseudoobscura_OTHER

Trace Drosophila_pseudoobscura_WGS

Trace Drosophila_sechellia_WGS

Trace Drosophila_simulans_OTHER

Trace Drosophila_simulans_WGS

Trace Drosophila_virilis_EST

Trace Drosophila_virilis_WGS

Trace Drosophila_willistoni_EST

Trace Drosophila_willistoni_OTHER

Trace Drosophila_willistoni_WGS

Trace Drosophila_yakuba_OTHER

Trace Drosophila_yakuba_WGS

9.3 Trace Databases: with E to I initials

Trace databases with E to I initials. Influenza virus isolates are listed separately.

Table 9.3 Trace Databases: with E to I initials

DB_DIR_PREFIX DATABASE

Trace Echinops_telfairi_OTHER

Trace Echinops_telfairi_WGS

Trace Ectocarpus_siliculosus_WGS

Trace Ehrlichia_canis_str__jake_OTHER

Trace Ehrlichia_canis_str__jake_WGS

Trace Ehrlichia_chaffeensis_str_arkansas_OTHER

Trace Ehrlichia_chaffeensis_str_arkansas_WGS

Trace Emiliania_huxleyi_ccmp1516_EST

Trace Emiliania_huxleyi_ccmp1516_WGS

Trace Entamoeba_dispar_saw760_WGS

Trace Entamoeba_histolytica_OTHER

Trace Entamoeba_histolytica_WGS

Trace Entamoeba_invadens_ip1_WGS

Trace Enterobacter_sakazakii_WGS

Trace Enterococcus_faecalis_OTHER

Trace Enterococcus_faecalis_v583_OTHER

Trace Enterococcus_faecalis_v583_WGS

Trace Enterococcus_faecium_OTHER

Trace Enterococcus_faecium_WGS

Trace Equus_caballus_EST

Trace Equus_caballus_OTHER

Trace Equus_caballus_WGS

Trace Erinaceus_europaeus_OTHER

Trace Erinaceus_europaeus_WGS

Trace Erythrobacter_litoralis_WGS

Trace Erythrobacter_litoralis_htcc2594_OTHER

Trace Erythrobacter_sp__nap1_WGS

Trace Escherichia_coli_101-1_WGS

Trace Escherichia_coli_53638_OTHER

Trace Escherichia_coli_53638_WGS

Trace Escherichia_coli_b171_WGS

Trace Escherichia_coli_b7a_WGS

Trace Escherichia_coli_e110019_WGS

Trace Escherichia_coli_e22_WGS

Trace Escherichia_coli_e24377a_OTHER

Trace Escherichia_coli_e24377a_WGS

Trace Escherichia_coli_f11_WGS

Trace Escherichia_coli_hs_OTHER

Trace Escherichia_coli_hs_WGS

Trace Escherichia_coli_k12_OTHER

Trace Eubacterium_hallii_OTHER

Trace Eubacterium_plautii_OTHER

Trace Eubacterium_ventriosum_OTHER

Trace Eubacterium_ventriosum_WGS

Trace Eulemur_macaco_OTHER

Trace Eulemur_macaco_macaco_OTHER

Trace Euprymna_scolopes_EST

Trace Exiguobacterium_sp_255-15_WGS

Trace Felis_catus_OTHER

Trace Felis_catus_WGS

Trace Ferroplasma_acidarmanus_type_i_WGS

Trace Fervidobacterium_nodosum_rt17-b1_WGS

Trace Flavobacteria_bacterium_bbfl7_WGS

Trace Flavobacteriales_bacterium_htcc2170_WGS

Trace Flavobacterium_johnsoniae_uw101_WGS

Trace Flavobacterium_sp__med217_WGS

Trace Francisella_tularensis_OTHER

Trace Francisella_tularensis_WGS

Trace Frankia_sp__cci3_OTHER

Trace Frankia_sp__cci3_WGS

Trace Frankia_sp__ean1pec_WGS

Trace Fusarium_oxysporum_WGS

Trace Gallus_gallus_OTHER

Trace Gallus_gallus_WGS

Trace Gamma_proteobacterium_kt_71_WGS

Trace Gasterosteus_aculeatus_OTHER

Trace Gasterosteus_aculeatus_WGS

Trace Geobacter_metallireducens_OTHER

Trace Geobacter_metallireducens_WGS

Trace Geobacter_sp__frc-32_OTHER

Trace Geobacter_sp__frc-32_WGS

Trace Geobacter_sulfurreducens_pca_OTHER

Trace Geobacter_sulfurreducens_pca_WGS

Trace Geobacter_uraniumreducens_rf4_WGS

Trace Gibberella_moniliformis_WGS

Trace Gibberella_zeae_OTHER

Trace Gibberella_zeae_WGS

Trace Ginglymostoma_cirratum_OTHER

Trace Glossina_morsitans_morsitans_OTHER

Trace Glycine_max_EST

Trace Glycine_max_OTHER

Trace Glycine_max_WGS

Trace Glyptapanteles_indiensis_bracovirus_OTHER

Trace Glyptapanteles_indiensis_bracovirus_WGS

Trace Gopherus_agassizii_OTHER

Trace Gorilla_gorilla_OTHER

Trace Gorilla_gorilla_WGS

Trace Gorilla_gorilla_gorilla_OTHER

Trace Gossypium_herbaceum_OTHER

Trace Gymnogyps_californianus_OTHER

Trace Haemophilus_somnus_129pt_WGS

Trace Halorhodospira_halophila_sl1_OTHER

Trace Halorhodospira_halophila_sl1_WGS

Trace Halothermothrix_orenii_h_168_OTHER

Trace Halothermothrix_orenii_h_168_WGS

Trace Heliconius_erato_OTHER

Trace Heliconius_melpomene_OTHER

Trace Heliothis_virescens_OTHER

Trace Helobdella_robusta_WGS

Trace Heloderma_suspectum_OTHER

Trace Hepatitis_c_virus_OTHER

Trace Herpetosiphon_aurantiacus_atcc_23779_WGS

Trace Heterorhabditis_bacteriophora_WGS

Trace Homo_sapiens_EST

Trace Homo_sapiens_OTHER

Trace Homo_sapiens_WGS

Trace Hyaloperonospora_parasitica_WGS

Trace Hydra_magnipapillata_WGS

Trace Hylobates_concolor_OTHER

Trace Hylobates_concolor_WGS

Trace Hypocrea_jecorina_WGS

Trace Ictalurus_punctatus_OTHER

Trace Ixodes_scapularis_OTHER

Trace Ixodes_scapularis_WGS

9.4 Trace Databases: with J to N initials

Trace database with J to N initials.

Table 9.4 Trace Databases: with J to N initials

DB_DIR_PREFIX DATABASE

Trace Janibacter_sp__htcc2649_OTHER

Trace Janibacter_sp__htcc2649_WGS

Trace Jannaschia_sp__ccs1_WGS

Trace Kineococcus_radiotolerans_srs30216_WGS

Trace Kluyveromyces_yarrowii_WGS

Trace Labeotropheus_fuelleborni_WGS

Trace Laccaria_bicolor_EST

Trace Laccaria_bicolor_WGS

Trace Lactobacillus_casei_atcc_334_WGS

Trace Lactobacillus_delbrueckii_subsp__bulgaricus_atcc_baa_365_WGS

Trace Lactobacillus_gasseri_atcc_33323_WGS

Trace Lactobacillus_reuteri_100-23_OTHER

Trace Lactobacillus_reuteri_100-23_WGS

Trace Lactobacillus_reuteri_jcm_1112_OTHER

Trace Lactobacillus_reuteri_jcm_1112_WGS

Trace Lactococcus_lactis_subsp__cremoris_sk11_WGS

Trace Lemur_catta_OTHER

Trace Lemur_catta_WGS

Trace Leuconostoc_mesenteroides_subsp__mesenteroides_atcc_8293_WGS

Trace Liriodendron_tulipifera_OTHER

Trace Listeria_monocytogenes_OTHER

Trace Listeria_monocytogenes_WGS

Trace Listeria_monocytogenes_str__1_2a_f6854_WGS

Trace Listeria_monocytogenes_str__4b_f2365_WGS

Trace Listeria_monocytogenes_str__4b_h7858_WGS

Trace Lodderomyces_elongisporus_WGS

Trace Loktanella_vestfoldensis_ska53_WGS

Trace Lottia_gigantea_WGS

Trace Loxodonta_africana_OTHER

Trace Loxodonta_africana_WGS

Trace Macaca_mulatta_EST

Trace Macaca_mulatta_OTHER

Trace Macaca_mulatta_WGS

Trace Macropus_eugenii_OTHER

Trace Macropus_eugenii_WGS

Trace Magnaporthe_grisea_OTHER

Trace Magnaporthe_grisea_WGS

Trace Magnetococcus_sp__mc-1_WGS

Trace Mammuthus_primigenius_OTHER

Trace Manduca_sexta_OTHER

Trace Manis_pentadactyla_WGS

Trace Mannheimia_haemolytica_WGS

Trace Maricaulis_maris_mcs10_WGS

Trace Marine_actinobacterium_phsc20c1_WGS

Trace Marine_gamma_proteobacterium_htcc2207_WGS

Trace Marinobacter_aquaeolei_vt8_WGS

Trace Marinomonas_sp__med121_WGS

Trace Mayetiola_destructor_OTHER

Trace Medicago_truncatula_OTHER

Trace Medicago_truncatula_WGS

Trace Melanochromis_auratus_WGS

Trace Meleagris_gallopavo_OTHER

Trace Mesoplasma_florum_OTHER

Trace Mesoplasma_florum_WGS

Trace Mesorhizobium_sp_bnc1_WGS

Trace Methanobrevibacter_smithii_WGS

Trace Methanococcoides_burtonii_dsm_6242_WGS

Trace Methanococcus_maripaludis_OTHER

Trace Methanococcus_maripaludis_WGS

Trace Methanoculleus_marisnigri_jr1_WGS

Trace Methanosaeta_thermophila_pt_WGS

Trace Methanosarcina_acetivorans_WGS

Trace Methanosarcina_barkeri_str__fusaro_WGS

Trace Methanospirillum_hungatei_jf-1_WGS

Trace Methylobacillus_flagellatus_OTHER

Trace Methylobacillus_flagellatus_WGS

Trace Methylococcus_capsulatus_str_bath_OTHER

Trace Methylococcus_capsulatus_str_bath_WGS

Trace Metriaclima_zebra_OTHER

Trace Metriaclima_zebra_WGS

Trace Microcebus_murinus_OTHER

Trace Microcebus_murinus_WGS

Trace Mimulus_guttatus_EST

Trace Mimulus_guttatus_OTHER

Trace Mimulus_guttatus_WGS

Trace Monodelphis_domestica_OTHER

Trace Monodelphis_domestica_WGS

Trace Monosiga_brevicollis_WGS

Trace Moorella_thermoacetica_atcc_39073_OTHER

Trace Moorella_thermoacetica_atcc_39073_WGS

Trace Moraxella_bovis_OTHER

Trace Muntiacus_muntjak_vaginalis_OTHER

Trace Muntiacus_reevesi_OTHER

Trace Mus_musculus_EST

Trace Mus_musculus_OTHER

Trace Mus_musculus_WGS

Trace Mus_musculus_castaneus_OTHER

Trace Mus_spretus_OTHER

Trace Musa_acuminata_OTHER

Trace Mustela_furo_OTHER

Trace Mycobacterium_flavescens_pyr-gck_WGS

Trace Mycobacterium_sp__jls_WGS

Trace Mycobacterium_sp__kms_WGS

Trace Mycobacterium_sp__mcs_WGS

Trace Mycobacterium_tuberculosis_OTHER

Trace Mycobacterium_tuberculosis_WGS

Trace Mycobacterium_tuberculosis_cdc1551_OTHER

Trace Mycobacterium_tuberculosis_cdc1551_WGS

Trace Mycobacterium_vanbaalenii_pyr-1_WGS

Trace Mycoplasma_alligatoris_WGS

Trace Mycoplasma_arthritidis_158l3-1_OTHER

Trace Mycoplasma_arthritidis_158l3-1_WGS

Trace Mycoplasma_capricolum_subsp__capricolum_atcc_27343_WGS

Trace Mycosphaerella_fijiensis_cirad86_WGS

Trace Mycosphaerella_graminicola_ipo323_WGS

Trace Myotis_lucifugus_OTHER

Trace Myotis_lucifugus_WGS

Trace Myxococcus_xanthus_OTHER

Trace Naegleria_gruberi_WGS

Trace Nasonia_giraulti_OTHER

Trace Nasonia_giraulti_WGS

Trace Nasonia_longicornis_WGS

Trace Nasonia_vitripennis_OTHER

Trace Nasonia_vitripennis_WGS

Trace Nectria_haematococca_mpvi_WGS

Trace Neisseria_meningitidis_mc58_WGS

Trace Nematostella_vectensis_EST

Trace Nematostella_vectensis_OTHER

Trace Nematostella_vectensis_WGS

Trace Neofelis_nebulosa_OTHER

Trace Neorickettsia_sennetsu_str_miyayama_OTHER

Trace Neorickettsia_sennetsu_str_miyayama_WGS

Trace Neosartorya_fischeri_nrrl_181_WGS

Trace Neurospora_crassa_OTHER

Trace Neurospora_crassa_WGS

Trace Nitrobacter_hamburgensis_x14_OTHER

Trace Nitrobacter_hamburgensis_x14_WGS

Trace Nitrobacter_sp__nb-311a_WGS

Trace Nitrobacter_winogradskyi_nb-255_WGS

Trace Nitrococcus_mobilis_nb-231_WGS

Trace Nitrosococcus_oceani_atcc_19707_OTHER

Trace Nitrosococcus_oceani_atcc_19707_WGS

Trace Nitrosospira_multiformis_atcc_25196_OTHER

Trace Nitrosospira_multiformis_atcc_25196_WGS

Trace Nocardioides_sp__js614_WGS

Trace Nomascus_leucogenys_OTHER

Trace Nomascus_leucogenys_leucogenys_OTHER

Trace Notothenia_coriiceps_OTHER

Trace Novosphingobium_aromaticivorans_dsm_12444_OTHER

Trace Novosphingobium_aromaticivorans_dsm_12444_WGS

Trace Nuphar_advena_OTHER

9.5 Trace Databases: with O to R initials

Trace database with O to R initials.

Table 9.5 Trace Databases: with O to R initials

DB_DIR_PREFIX DATABASE

Trace Oceanicola_granulosus_htcc2516_WGS

Trace Oceanobacter_sp__red65_WGS

Trace Oceanospirillum_sp__med92_WGS

Trace Ochotona_princeps_WGS

Trace Odocoileus_hemionus_OTHER

Trace Odocoileus_virginianus_OTHER

Trace Oenococcus_oeni_psu-1_WGS

Trace Oikopleura_dioica_OTHER

Trace Oncorhynchus_mykiss_EST

Trace Opuntia_cochenillifera_OTHER

Trace Oreamnos_americanus_OTHER

Trace Ornithorhynchus_anatinus_OTHER

Trace Ornithorhynchus_anatinus_WGS

Trace Oryctolagus_cuniculus_OTHER

Trace Oryctolagus_cuniculus_WGS

Trace Oryza_alta_OTHER

Trace Oryza_australiensis_OTHER

Trace Oryza_brachyantha_OTHER

Trace Oryza_coarctata_OTHER

Trace Oryza_glaberrima_OTHER

Trace Oryza_granulata_OTHER

Trace Oryza_minuta_OTHER

Trace Oryza_nivara_OTHER

Trace Oryza_officinalis_OTHER

Trace Oryza_punctata_OTHER

Trace Oryza_ridleyi_OTHER

Trace Oryza_rufipogon_OTHER

Trace Oryza_sativa_OTHER

Trace Oryza_sativa__indica_cultivar_group_OTHER

Trace Oryza_sativa__japonica_cultivar_group_OTHER

Trace Oryza_sp__OTHER

Trace Otolemur_garnettii_OTHER

Trace Otolemur_garnettii_WGS

Trace Ovibos_moschatus_OTHER

Trace Ovis_aries_EST

Trace Ovis_aries_OTHER

Trace Ovis_canadensis_OTHER

Trace Oxytricha_trifallax_OTHER

Trace Oxytricha_trifallax_WGS

Trace Paenibacillus_larvae_OTHER

Trace Paenibacillus_larvae_WGS

Trace Pan_troglodytes_OTHER

Trace Pan_troglodytes_WGS

Trace Pantoea_stewartii_WGS

Trace Papilio_glaucus_OTHER

Trace Papio_anubis_OTHER

Trace Papio_cynocephalus_OTHER

Trace Paracoccus_denitrificans_pd1222_WGS

Trace Paramecium_bursaria_chlorella_virus_ny2a_OTHER

Trace Paramecium_bursaria_chlorella_virus_ny2a_WGS

Trace Paramecium_tetraurelia_OTHER

Trace Paramecium_tetraurelia_WGS

Trace Pediculus_humanus_WGS

Trace Pediococcus_pentosaceus_atcc_25745_WGS

Trace Pelobacter_carbinolicus_dsm_2380_WGS

Trace Pelobacter_propionicus_dsm_2379_WGS

Trace Pelodictyon_luteolum_dsm_273_WGS

Trace Pelodictyon_phaeoclathratiforme_bu-1_WGS

Trace Peptostreptococcus_micros_OTHER

Trace Peptostreptococcus_micros_WGS

Trace Perkinsus_marinus_WGS

Trace Petromyzon_marinus_EST

Trace Petromyzon_marinus_OTHER

Trace Petromyzon_marinus_WGS

Trace Phaeodactylum_tricornutum_WGS

Trace Phakopsora_pachyrhizi_WGS

Trace Phanerochaete_chrysosporium_WGS

Trace Phaseolus_vulgaris_OTHER

Trace Photobacterium_profundum_3tck_WGS

Trace Photobacterium_sp__ska34_WGS

Trace Phycomyces_blakesleeanus_WGS

Trace Physarum_polycephalum_WGS

Trace Physcomitrella_patens_WGS

Trace Phytophthora_capsici_WGS

Trace Phytophthora_infestans_OTHER

Trace Phytophthora_infestans_WGS

Trace Phytophthora_ramorum_WGS

Trace Phytophthora_sojae_WGS

Trace Pichia_guilliermondii_WGS

Trace Pichia_stipitis_cbs_6054_EST

Trace Pichia_stipitis_cbs_6054_WGS

Trace Pinus_taeda_EST

Trace Plasmodium_falciparum_OTHER

Trace Plasmodium_falciparum_WGS

Trace Plasmodium_vivax_sai-1_OTHER

Trace Plasmodium_vivax_sai-1_WGS

Trace Platynereis_dumerilii_OTHER

Trace Podospora_anserina_OTHER

Trace Polaribacter_irgensii_23-p_WGS

Trace Polaromonas_naphthalenivorans_cj2_WGS

Trace Polaromonas_sp__js666_WGS

Trace Polynucleobacter_sp__qlw-p1dmwa-1_WGS

Trace Polypterus_bichir_OTHER

Trace Pongo_pygmaeus_OTHER

Trace Pongo_pygmaeus_WGS

Trace Pongo_pygmaeus_abelii_OTHER

Trace Pongo_pygmaeus_abelii_WGS

Trace Populus_balsamifera_WGS

Trace Populus_trichocarpa_OTHER

Trace Porites_lobata_WGS

Trace Porphyromonas_gingivalis_w83_OTHER

Trace Porphyromonas_gingivalis_w83_WGS

Trace Pristionchus_pacificus_OTHER

Trace Pristionchus_pacificus_WGS

Trace Procavia_capensis_WGS

Trace Prochlorococcus_marinus_str__mit_9211_OTHER

Trace Prochlorococcus_marinus_str__mit_9211_WGS

Trace Prochlorococcus_sp__mit9312_OTHER

Trace Prochlorococcus_sp__mit9312_WGS

Trace Prochlorococcus_sp__natl2a_OTHER

Trace Prochlorococcus_sp__natl2a_WGS

Trace Prosthecochloris_aestuarii_dsm_271_WGS

Trace Pseudoalteromonas_atlantica_t6c_WGS

Trace Pseudoalteromonas_tunicata_d2_OTHER

Trace Pseudoalteromonas_tunicata_d2_WGS

Trace Pseudomonas_aeruginosa_OTHER

Trace Pseudomonas_aeruginosa_WGS

Trace Pseudomonas_aeruginosa_pa7_WGS

Trace Pseudomonas_fluorescens_pfo-1_OTHER

Trace Pseudomonas_fluorescens_pfo-1_WGS

Trace Pseudomonas_mendocina_ymp_WGS

Trace Pseudomonas_putida_kt2440_OTHER

Trace Pseudomonas_putida_kt2440_WGS

Trace Pseudomonas_syringae_pv__syringae_b728a_WGS

Trace Pseudomonas_syringae_pv_tomato_str_dc3000_OTHER

Trace Pseudomonas_syringae_pv_tomato_str_dc3000_WGS

Trace Psychrobacter_cryohalolentis_k5_WGS

Trace Psychrobacter_sp_273-4_OTHER

Trace Psychrobacter_sp_273-4_WGS

Trace Psychrobacter_sp__prwf-1_WGS

Trace Psychroflexus_torquis_atcc_700755_WGS

Trace Psychromonas_ingrahamii_37_WGS

Trace Psychromonas_sp__cnpt3_OTHER

Trace Psychromonas_sp__cnpt3_WGS

Trace Pteropus_vampyrus_WGS

Trace Puccinia_graminis_OTHER

Trace Puccinia_graminis_WGS

Trace Pyrenophora_tritici-repentis_WGS

Trace Ralstonia_eutropha_jmp134_OTHER

Trace Ralstonia_eutropha_jmp134_WGS

Trace Ralstonia_metallidurans_ch34_WGS

Trace Ralstonia_solanacearum_gmi1000_WGS

Trace Rangifer_tarandus_OTHER

Trace Rattus_norvegicus_EST

Trace Rattus_norvegicus_OTHER

Trace Rattus_norvegicus_WGS

Trace Reclinomonas_americana_WGS

Trace Reinekea_sp__med297_WGS

Trace Reniera_sp__jgi-2005_EST

Trace Reniera_sp__jgi-2005_WGS

Trace Rhamphochromis_esox_WGS

Trace Rhinolophus_ferrumequinum_OTHER

Trace Rhizopus_oryzae_OTHER

Trace Rhizopus_oryzae_WGS

Trace Rhodobacter_sphaeroides_2_4_1_WGS

Trace Rhodobacter_sphaeroides_atcc_17025_WGS

Trace Rhodobacter_sphaeroides_atcc_17029_WGS

Trace Rhodobacterales_bacterium_htcc2654_WGS

Trace Rhodoferax_ferrireducens_dsm_15236_WGS

Trace Rhodopseudomonas_palustris_bisb18_WGS

Trace Rhodopseudomonas_palustris_bisb5_WGS

Trace Rhodopseudomonas_palustris_haa2_WGS

Trace Rhodospirillum_rubrum_atcc_11170_OTHER

Trace Rhodospirillum_rubrum_atcc_11170_WGS

Trace Ricinus_communis_EST

Trace Ricinus_communis_WGS

Trace Rickettsiella_grylli_OTHER

Trace Rickettsiella_grylli_WGS

Trace Robiginitalea_biformata_WGS

Trace Roseiflexus_castenholzii_dsm_13941_WGS

Trace Roseiflexus_sp__rs-1_WGS

Trace Roseobacter_sp__med193_WGS

Trace Roseovarius_sp__217_WGS

Trace Rubrivivax_gelatinosus_pm1_OTHER

Trace Rubrivivax_gelatinosus_pm1_WGS

Trace Rubrobacter_xylanophilus_dsm_9941_OTHER

Trace Rubrobacter_xylanophilus_dsm_9941_WGS

Trace Ruminococcus_gnavus_OTHER

Trace Ruminococcus_obeum_OTHER

Trace Ruminococcus_obeum_WGS

Trace Ruminococcus_torques_OTHER

Trace Ruminococcus_torques_WGS

9.6 Trace Databases: with S to Z initials

Trace database with S to Z initials.

Table 9.6 Trace Databases: with S to Z initials

DB_DIR_PREFIX DATABASE

Trace Saccharomyces_bayanus_WGS

Trace Saccharomyces_cerevisiae_WGS

Trace Saccharomyces_kluyveri_OTHER

Trace Saccharomyces_mikatae_WGS

Trace Saccharomyces_paradoxus_WGS

Trace Saccharophagus_degradans_2-40_WGS

Trace Saccoglossus_kowalevskii_OTHER

Trace Saccoglossus_kowalevskii_WGS

Trace Saimiri_boliviensis_OTHER

Trace Saimiri_boliviensis_boliviensis_OTHER

Trace Salinispora_tropica_cnb-440_WGS

Trace Salmo_salar_OTHER

Trace Schistocerca_americana_OTHER

Trace Schistosoma_mansoni_EST

Trace Schistosoma_mansoni_WGS

Trace Schizosaccharomyces_japonicus_WGS

Trace Schizosaccharomyces_octosporus_WGS

Trace Schmidtea_mediterranea_EST

Trace Schmidtea_mediterranea_OTHER

Trace Schmidtea_mediterranea_WGS

Trace Sclerotinia_sclerotiorum_OTHER

Trace Sclerotinia_sclerotiorum_WGS

Trace Selaginella_moellendorffii_EST

Trace Selaginella_moellendorffii_OTHER

Trace Selaginella_moellendorffii_WGS

Trace Serratia_proteamaculans_568_WGS

Trace Shewanella_amazonensis_sb2b_WGS

Trace Shewanella_baltica_os155_WGS

Trace Shewanella_baltica_os195_OTHER

Trace Shewanella_baltica_os195_WGS

Trace Shewanella_denitrificans_os-217_WGS

Trace Shewanella_frigidimarina_ncimb_400_WGS

Trace Shewanella_oneidensis_mr-1_OTHER

Trace Shewanella_putrefaciens_cn-32_OTHER

Trace Shewanella_putrefaciens_cn-32_WGS

Trace Shewanella_sp__ana-3_WGS

Trace Shewanella_sp__mr-4_WGS

Trace Shewanella_sp__mr-7_WGS

Trace Shewanella_sp__pv-4_OTHER

Trace Shewanella_sp__pv-4_WGS

Trace Shewanella_woodyi_atcc_51908_WGS

Trace Shigella_boydii_bs512_OTHER

Trace Shigella_boydii_bs512_WGS

Trace Shigella_dysenteriae_1012_WGS

Trace Silicibacter_sp__tm1040_OTHER

Trace Silicibacter_sp__tm1040_WGS

Trace Sinorhizobium_medicae_wsm419_WGS

Trace Sminthopsis_macroura_OTHER

Trace Solanum_lycopersicum_OTHER

Trace Sorex_araneus_OTHER

Trace Sorex_araneus_WGS

Trace Sorghum_bicolor_EST

Trace Sorghum_bicolor_OTHER

Trace Sorghum_bicolor_WGS

Trace Spermophilus_tridecemlineatus_OTHER

Trace Spermophilus_tridecemlineatus_WGS

Trace Sphenodon_punctatus_OTHER

Trace Sphingopyxis_alaskensis_rb2256_WGS

Trace Sphoeroides_nephelus_OTHER

Trace Spiroplasma_kunkelii_OTHER

Trace Spisula_solidissima_OTHER

Trace Sporidiobolus_salmonicolor_iam_12258_WGS

Trace Sporobolomyces_roseus_iam_13481_WGS

Trace Squalus_acanthias_OTHER

Trace Stagonospora_nodorum_OTHER

Trace Stagonospora_nodorum_WGS

Trace Staphylococcus_aureus_col_OTHER

Trace Staphylococcus_aureus_col_WGS

Trace Staphylococcus_aureus_subsp__aureus_jh1_WGS

Trace Staphylococcus_aureus_subsp__aureus_jh9_WGS

Trace Staphylococcus_epidermidis_rp62a_OTHER

Trace Staphylococcus_epidermidis_rp62a_WGS

Trace Streptococcus_agalactiae_2603v_r_OTHER

Trace Streptococcus_agalactiae_2603v_r_WGS

Trace Streptococcus_agalactiae_a909_OTHER

Trace Streptococcus_agalactiae_a909_WGS

Trace Streptococcus_pneumoniae_tigr4_OTHER

Trace Streptococcus_pneumoniae_tigr4_WGS

Trace Streptococcus_pyogenes_m1_gas_OTHER

Trace Streptococcus_suis_89_1591_WGS

Trace Streptococcus_thermophilus_lmd-9_WGS

Trace Streptomyces_ghanaensis_WGS

Trace Strongylocentrotus_purpuratus_EST

Trace Strongylocentrotus_purpuratus_OTHER

Trace Strongylocentrotus_purpuratus_WGS

Trace Suncus_etruscus_OTHER

Trace Sus_scrofa_EST

Trace Sus_scrofa_OTHER

Trace Sus_scrofa_WGS

Trace Synechococcus_elongatus_pcc_7942_OTHER

Trace Synechococcus_elongatus_pcc_7942_WGS

Trace Synechococcus_sp__cc9605_OTHER

Trace Synechococcus_sp__cc9605_WGS

Trace Synechococcus_sp__cc9902_OTHER

Trace Synechococcus_sp__cc9902_WGS

Trace Synechococcus_sp__wh_5701_WGS

Trace Synechococcus_sp__wh_7805_WGS

Trace Syntrophobacter_fumaroxidans_mpob_WGS

Trace Syntrophomonas_wolfei_goettingen_WGS

Trace Tachyglossus_aculeatus_OTHER

Trace Taeniopygia_guttata_OTHER

Trace Taeniopygia_guttata_WGS

Trace Takifugu_rubripes_OTHER

Trace Takifugu_rubripes_WGS

Trace Tarsius_syrichta_WGS

Trace Tenacibaculum_sp__med152_WGS

Trace Tetrahymena_thermophila_OTHER

Trace Tetrahymena_thermophila_WGS

Trace Tetraodon_nigroviridis_OTHER

Trace Tetraodon_nigroviridis_WGS

Trace Thalassiosira_pseudonana_WGS

Trace Thamnophis_sirtalis_OTHER

Trace Thermoanaerobacter_ethanolicus_atcc_33223_WGS

Trace Thermoanaerobacter_ethanolicus_x514_OTHER

Trace Thermoanaerobacter_ethanolicus_x514_WGS

Trace Thermobifida_fusca_yx_OTHER

Trace Thermobifida_fusca_yx_WGS

Trace Thermofilum_pendens_hrk_5_WGS

Trace Thiobacillus_denitrificans_atcc_25259_OTHER

Trace Thiobacillus_denitrificans_atcc_25259_WGS

Trace Thiomicrospira_crunogena_xcl-2_OTHER

Trace Thiomicrospira_crunogena_xcl-2_WGS

Trace Thiomicrospira_denitrificans_atcc_33889_WGS

Trace Tilapia_OTHER

Trace Toxoplasma_gondii_type_i_WGS

Trace Toxoplasma_gondii_type_iii_WGS

Trace Treponema_denticola_atcc_35405_OTHER

Trace Treponema_denticola_atcc_35405_WGS

Trace Tribolium_castaneum_EST

Trace Tribolium_castaneum_OTHER

Trace Tribolium_castaneum_WGS

Trace Trichinella_spiralis_OTHER

Trace Trichinella_spiralis_WGS

Trace Trichoderma_virens_gv29-8_WGS

Trace Trichodesmium_erythraeum_ims101_WGS

Trace Trichomonas_vaginalis_OTHER

Trace Trichomonas_vaginalis_WGS

Trace Trichoplax_adhaerens_WGS

Trace Trichosurus_vulpecula_EST

Trace Triphysaria_versicolor_EST

Trace Triticum_aestivum_OTHER

Trace Trypanosoma_brucei_OTHER

Trace Trypanosoma_cruzi_strain_esmeraldo_WGS

Trace Tupaia_belangeri_OTHER

Trace Tupaia_belangeri_WGS

Trace Tursiops_truncatus_WGS

Trace Uncinocarpus_reesii_WGS

Trace Uncultured_bacteria_OTHER

Trace Uncultured_bacteria_WGS

Trace Uncultured_bacterium_zdt-14e13_OTHER

Trace Uncultured_bacterium_zdt-25h12_OTHER

Trace Uncultured_bacterium_zdt-25h14_OTHER

Trace Uncultured_bacterium_zdt-33i5_OTHER

Trace Uncultured_bacterium_zdt-39a1_OTHER

Trace Uncultured_bacterium_zdt-44a23_OTHER

Trace Uncultured_bacterium_zdt-45e5_OTHER

Trace Uncultured_bacterium_zdt-48a5_OTHER

Trace Uncultured_bacterium_zdt-9n2_OTHER

Trace Ustilago_hordei_OTHER

Trace Ustilago_maydis_WGS

Trace Verminephrobacter_eiseniae_ef01-2_WGS

Trace Vibrio_alginolyticus_12g01_WGS

Trace Vibrio_angustum_s14_WGS

Trace Vibrio_cholerae_am-19226_WGS

Trace Vibrio_cholerae_mo10_WGS

Trace Vibrio_cholerae_o1_biovar_eltor_str_n16961_OTHER

Trace Vibrio_cholerae_o1_biovar_eltor_str_n16961_WGS

Trace Vibrio_cholerae_rc385_WGS

Trace Vibrio_cholerae_v51_WGS

Trace Vibrio_cholerae_v52_WGS

Trace Vibrio_harveyi_WGS

Trace Vibrio_sp__ex25_WGS

Trace Vibrio_sp__med222_WGS

Trace Vitis_vinifera_OTHER

Trace Vitis_vinifera_WGS

Trace Volvox_carteri_OTHER

Trace Volvox_carteri_f__nagariensis_WGS

Trace Wolbachia_endosymbiont_of_drosophila_melanogaster_OTHER

Trace Wolbachia_endosymbiont_of_drosophila_melanogaster_WGS

Trace Wolbachia_endosymbiont_of_drosophila_simulans_WGS

Trace Xanthobacter_autotrophicus_py2_WGS

Trace Xanthomonas_campestris_pv__armoraciae_WGS

Trace Xanthomonas_oryzae_pv__oryzae_px099a_WGS

Trace Xanthomonas_oryzae_pv__oryzicola_OTHER

Trace Xanthomonas_oryzae_pv__oryzicola_WGS

Trace Xanthomonas_oryzae_pv__oryzicola_bls256_OTHER

Trace Xanthomonas_oryzae_pv__oryzicola_bls256_WGS

Trace Xenopus_laevis_EST

Trace Xenopus_tropicalis_EST

Trace Xenopus_tropicalis_OTHER

Trace Xenopus_tropicalis_WGS

Trace Xenorhabdus_bovienii_OTHER

Trace Xiphophorus_hellerii_OTHER

Trace Xylella_fastidiosa_ann-1_WGS

Trace Xylella_fastidiosa_dixon_WGS

Trace Yersinia_pestis_angola_OTHER

Trace Yersinia_pestis_angola_WGS

Trace Yersinia_pestis_biovar_antiqua_str__b42003004_WGS

Trace Yersinia_pestis_biovar_antiqua_str__e1979001_WGS

Trace Yersinia_pestis_biovar_antiqua_str__ug05-0454_WGS

Trace Yersinia_pestis_biovar_mediaevalis_str__k1973002_WGS

Trace Yersinia_pestis_biovar_orientalis_str__f1991016_WGS

Trace Yersinia_pestis_biovar_orientalis_str__ip275_WGS

Trace Yersinia_pestis_biovar_orientalis_str__mg05-1020_WGS

Trace Yersinia_pseudotuberculosis_ip_31758_OTHER

Trace Yersinia_pseudotuberculosis_ip_31758_WGS

Trace Zea_mays_EST

Trace Zea_mays_OTHER

Trace Zea_mays_WGS

9.7 Trace Databases: Influenza isolates specific

Influenza isolates specific Trace databases.

Table 8.7 Trace Databases: Influenza isolates specific

DB_DIR_PREFIX DATABASE

Trace Influenza_a_virus__a_ashburton_280_2004_h3n2___OTHER

Trace Influenza_a_virus__a_bay_of_plenty_279_2004_h3n2___OTHER

Trace Influenza_a_virus__a_bay_of_plenty_332_2004_h3n2___OTHER

Trace Influenza_a_virus__a_bay_of_plenty_383_2004_h3n2___OTHER

Trace Influenza_a_virus__a_baylor_11515_82_h1n1___OTHER

Trace Influenza_a_virus__a_baylor_11735_82_h1n1___OTHER

Trace Influenza_a_virus__a_beijing_1_68_h3n2___OTHER

Trace Influenza_a_virus__a_beijing_39_75_h3n2___OTHER

Trace Influenza_a_virus__a_bel_42_h1n1___OTHER

Trace Influenza_a_virus__a_black_duck_ohio_307_1987_h6n2___OTHER

Trace Influenza_a_virus__a_black_duck_ohio_95_93_h1n1___OTHER

Trace Influenza_a_virus__a_bufflehead_ohio_246_1986_h11n2___OTHER

Trace Influenza_a_virus__a_cam_46_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_01_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_01_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_01_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_02_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_02_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_03_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_04_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_05_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_06_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_06_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_07_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_08_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_09_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_100_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_100_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_101_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_101_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_102_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_102_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_103_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_103_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_104_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_104_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_105_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_105_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_106_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_106_2004_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_107_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_108_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_109_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_10_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_10_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_119_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_11_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_124_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_125_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_125_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_126_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_127_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_129_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_12_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_139_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_13_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_140_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_144_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_146_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_149_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_14_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_152_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_153_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_155_2001_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_166_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_16_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_16_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_16_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_16_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_179_1999_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_17_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_17_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_17_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_186_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_18_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_18_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_19_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_19_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_19_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_201_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_202_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_204_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_205_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_205_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_206_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_206_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_207_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_208_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_209_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_20_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_20_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_20_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_20_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_210_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_212_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_21_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_21_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_21_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_220_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_22_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_22_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_230_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_232_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_233_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_234_2005_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_236_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_237_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_238_2005_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_23_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_23_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_242_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_248_2005_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_24_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_24_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_250_2005_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_266_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_269_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_26_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_26_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_270_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_27_2000_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_27_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_28_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_29_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_29_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_29_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_2_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_303_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_304_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_305_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_308_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_309_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_30_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_30_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_310_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_311_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_312_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_313_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_315_2004_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_31_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_32_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_33_2000_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_33_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_34_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_34_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_34_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_34_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_35_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_35_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_36_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_36_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_37_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_37_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_382_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_384_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_386_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_387_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_38_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_390_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_391_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_392_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_393_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_394_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_395_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_397_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_398_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_399_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_39_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_3_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_400_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_401_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_403_2003_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_405_2003_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_408_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_409_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_40_2001_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_411_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_412_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_416_2003_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_420_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_423_2003_h3n2___OTHER

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Trace Influenza_a_virus__a_canterbury_425_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_426_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_427_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_428_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_429_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_42_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_42_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_430_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_431_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_432_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_434_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_435_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_436_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_437_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_438_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_439_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_43_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_43_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_440_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_441_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_442_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_443_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_444_2003_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_44_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_44_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_45_2001_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_47_2001_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_48_2000_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_49_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_50_2001_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_50_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_51_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_51_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_53_2001_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_54_2000_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_57_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_57_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_58_2000_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_58_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_58_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_59_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_5_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_60_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_60_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_60_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_61_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_61_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_62_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_62_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_63_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_63_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_64_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_64_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_64_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_64_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_65_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_65_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_66_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_66_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_66_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_67_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_67_2005_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_68_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_68_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_68_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_69_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_69_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_70_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_70_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_71_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_71_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_72_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_72_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_73_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_73_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_74_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_75_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_75_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_76_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_76_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_76_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_78_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_79_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_79_2001_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_79_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_7_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_80_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_80_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_81_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_81_2002_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_84_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_85_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_87_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_87_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_88_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_89_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_8_2000_h1n1___OTHER

Trace Influenza_a_virus__a_canterbury_90_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_92_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_93_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_94_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_95_2000_h1n1___OTHER

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Trace Influenza_a_virus__a_canterbury_97_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_98_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_99_2000_h3n2___OTHER

Trace Influenza_a_virus__a_canterbury_9_2000_h1n1___OTHER

Trace Influenza_a_virus__a_chicken_afghanistan_1207_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_1047-30_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_1047-34_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_1047-54_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_1047-62_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_1047-8_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_641_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_nigeria_957-20_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_sudan_1784-10_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_sudan_1784-7_2006_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_10_2005_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_11_2005_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_17_2005_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_2_2005_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_6_2005_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_8_2005_h5n1___OTHER

Trace Influenza_a_virus__a_chicken_viet_nam_9_2005_h5n1___OTHER

Trace Influenza_a_virus__a_christchurch_10_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_13_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_14_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_15_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_184_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_297_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_339_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_89_2004_h3n2___OTHER

Trace Influenza_a_virus__a_christchurch_90_2004_h3n2___OTHER

Trace Influenza_a_virus__a_connecticut_9_56_h1n1___OTHER

Trace Influenza_a_virus__a_cygnus_cygnus_iran_754_2006_h5n1___OTHER

Trace Influenza_a_virus__a_cygnus_olor_croatia_1_2005_h5n1___OTHER

Trace Influenza_a_virus__a_cygnus_olor_italy_742_2006_h5n1___OTHER

Trace Influenza_a_virus__a_denver_57_h1n1___OTHER

Trace Influenza_a_virus__a_duck_cote_d_ivoire_1787-18_2006_h5n1___OTHER

Trace Influenza_a_virus__a_duck_egypt_2253-3_2006_h5n1___OTHER

Trace Influenza_a_virus__a_duck_niger_914_2006_h5n1___OTHER

Trace Influenza_a_virus__a_duck_viet_nam_12_2005_h5n1___OTHER

Trace Influenza_a_virus__a_duck_viet_nam_18_2005_h5n1___OTHER

Trace Influenza_a_virus__a_duck_viet_nam_19_2005_h5n1___OTHER

Trace Influenza_a_virus__a_duck_viet_nam_1_2005_h5n1___OTHER

Trace Influenza_a_virus__a_duck_viet_nam_20_2005_h5n1___OTHER

Trace Influenza_a_virus__a_dunedin_10_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_12_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_14_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_18_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_1_2000__h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_1_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_2_2000_h1n1___OTHER

Trace Influenza_a_virus__a_dunedin_38_2003_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_3_2000_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_3_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_8_2002_h3n2___OTHER

Trace Influenza_a_virus__a_dunedin_9_2002_h3n2___OTHER

Trace Influenza_a_virus__a_england_72_h3n2___OTHER

Trace Influenza_a_virus__a_environment_ohio_1007_2005_h1n1___OTHER

Trace Influenza_a_virus__a_fort_worth_50_h1n1___OTHER

Trace Influenza_a_virus__a_fortmonmouth_1_47_h1n1___OTHER

Trace Influenza_a_virus__a_gadwall_ohio_37_1999_h6n2___OTHER

Trace Influenza_a_virus__a_green_wing_teal_ohio_178_1999_h6n2___OTHER

Trace Influenza_a_virus__a_green_wing_teal_ohio_344_86_h4n2___OTHER

Trace Influenza_a_virus__a_green_wing_teal_ohio_430_1987_h1n1___OTHER

Trace Influenza_a_virus__a_green_wing_teal_ohio_59_1989_h6n8___OTHER

Trace Influenza_a_virus__a_green_wing_teal_ohio_86_1986_h6n2___OTHER

Trace Influenza_a_virus__a_guandong_243_72_h3n2___OTHER

Trace Influenza_a_virus__a_guinea_fowl_nigeria_957-12_2006_h5n1___OTHER

Trace Influenza_a_virus__a_hickox_1940_h1n1___OTHER

Trace Influenza_a_virus__a_hong_kong_117_77_h1n1___OTHER

Trace Influenza_a_virus__a_hong_kong_11_73_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_14_74_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_14_83_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_14_92_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_1_82_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_24_85_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_2_88_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_33_73_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_3_69_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_45_80_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_46_71_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_46_80_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_49_74_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_4_84_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_50_72_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_6_72_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_6_85_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_7_85_h3n2___OTHER

Trace Influenza_a_virus__a_hong_kong_7_87_h3n2___OTHER

Trace Influenza_a_virus__a_hutt_82_2000_h3n2___OTHER

Trace Influenza_a_virus__a_malaysia_54_h1n1___OTHER

Trace Influenza_a_virus__a_mallard_alaska_256_2005_h3n8___OTHER

Trace Influenza_a_virus__a_mallard_alaska_715_2005_h3n8___OTHER

Trace Influenza_a_virus__a_mallard_italy_835_2006_h5n1___OTHER

Trace Influenza_a_virus__a_mallard_maryland_789_2002_h5n2___OTHER

Trace Influenza_a_virus__a_mallard_ohio_170_1999_h6n5___OTHER

Trace Influenza_a_virus__a_mallard_ohio_171_1990_h1n1___OTHER

Trace Influenza_a_virus__a_mallard_ohio_249_1998_h6n1___OTHER

Trace Influenza_a_virus__a_mallard_ohio_264_1986_h3n8___OTHER

Trace Influenza_a_virus__a_mallard_ohio_265_1987_h1n9___OTHER

Trace Influenza_a_virus__a_mallard_ohio_298_1987_h4n6___OTHER

Trace Influenza_a_virus__a_mallard_ohio_322_1998_h7n3___OTHER

Trace Influenza_a_virus__a_mallard_ohio_338_1986_h4n8___OTHER

Trace Influenza_a_virus__a_mallard_ohio_344_1987_h6n2___OTHER

Trace Influenza_a_virus__a_mallard_ohio_409_1988_h12n5___OTHER

Trace Influenza_a_virus__a_mallard_ohio_424_1988_h6n2___OTHER

Trace Influenza_a_virus__a_mallard_ohio_56_1999_h1n1___OTHER

Trace Influenza_a_virus__a_mallard_ohio_64_1989_h6n8___OTHER

Trace Influenza_a_virus__a_mallard_ohio_66_1999_h1n1___OTHER

Trace Influenza_a_virus__a_mallard_ohio_83_1986_h4n6___OTHER

Trace Influenza_a_virus__a_mallard_ohio_94_1989_h4n2___OTHER

Trace Influenza_a_virus__a_mallard_ohio_97_1989_h4n2___OTHER

Trace Influenza_a_virus__a_melbourne_35_h1n1___OTHER

Trace Influenza_a_virus__a_memphis_101_72_h3n2___OTHER

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Trace Influenza_a_virus__a_memphis_2_1986_h3n2___OTHER

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Trace Influenza_a_virus__a_nanchang_13_1996_h1n1___OTHER

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Trace Influenza_a_virus__a_nanchang_21_1996_h1n1___OTHER

Trace Influenza_a_virus__a_nanchang_23_1996_h1n1___OTHER

Trace Influenza_a_virus__a_nanchang_25_1996_h1n1___OTHER

Trace Influenza_a_virus__a_nanchang_26_1996_h1n1___OTHER

Trace Influenza_a_virus__a_nanchang_58_93_h3n2___OTHER

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Trace Influenza_a_virus__a_nanchang_a1_94_h3n2___OTHER

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Trace Influenza_a_virus__a_nelson_marlborough_1_2000_h3n2___OTHER

Trace Influenza_a_virus__a_new_south_wales_13_1999_h3n2___OTHER

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Trace Influenza_a_virus__a_new_york_100_2002_h3n2___OTHER

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10. Feedback

Please send your comments and questions over this document and BLAST services to:
blast-help@ncbi.nlm.nih.gov

Questions over other NCBI resources should be sent to:
info@ncbi.nlm.nih.gov