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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 






processing output:
cycle 1
cycle 2
cycle 3
cycle 4

Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family   begin  end (left)  ID

  203  34.1  0.0  3.4  A08A08_CONSENSUS    776  863    (8) +  CT-rich  Low_complexity     1   85    (0)      



Alignments:
203  34.09  0.00  3.41  A08A08_CONSENSUS  776  863  (8)  C  (GA)n#Simple_repeat  (95)  85  1  5

  A08A08_CONSENSU    776 CNCTTTTNTNTCCTNTCCCTCTCCCTNTATTCTNTTTCTTTACTCTNTCT 825    
                          ?  i i?i?ii  ?  i     i  ?  i   ? i   i      ?   
C (GA)n#Simple_re     85 CTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCT-CTCTCTCT 38     

  A08A08_CONSENSU    826 TCCTCTTAGTGTACATCTATTTTTTCTCTCTTTCTCTC 863    
                         ii    ivv v viv    i i i       i      
C (GA)n#Simple_re     37 CTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTC 1      

Transitions / transversions = 3.60 (18 / 5)
Gap_init rate = 0.04 (3 / 85), avg. gap size = 1.00 (3 / 3)  



Masked Sequence:
>A08A08_CONSENSUS
GAGATCCCTTATNCTTTGCCACATANANCTCCACCGCCGTGGAAGCCGCT
CTACAACTNCTGGATCCCCCGGGCNGCAGGAAANCGGCACGANGGAGGAT
GGTGTAATACCACCACAACTTGTGTCTTTAAAAAAACNACTCGNCNTGGT
TCCTCAAAATACATGGAAAAACAACTANCATCCACAGGGANATTGANCAA
TANANCTGAATAAAACCCNGATTTCTTTNANTGGAACNGAGTTCATNCTN
CGTTCCTGTGATGGGGCNNCTTTCACTGGAGANAGTCAANATGAGGCTGC
ACACCTTCCTATTCCNANGACCCCATAACATCTCNGTCNACGCNCGCNAT
GCCNNGTAATCATTGGTGNCCAAGGGGNNATGCCTGATGGGCCCAACCAC
TGCCCCCCCCTTTTTGTTNCCGGGATGTCTCCNGCNCGNGGTGTGTCCCT
GGGCTATCCTACTTCAATANCNTTNGGTGGATNGAANTTTCCCGGNAANC
CTTTGGTTTCTCCNCNCNTTCCTNNCCAACCAATTTNNAAANNTGNTTTN
TGGAANTNCGAATTGCCCTNGGNGTNTTTTTCCCCCTAACNATNCCCGGC
CNCGAAANATTNTCTCTTNGNGGGGGNTCCNCCTCCCNTCCCAANGAAAN
CTTCTTCTCTTGNGAAGAGNGTTTCNCTANTCTCCCTCTTTCTTATTATA
TTTTCTTTNAATANTTCNTTTCTCCCCTCNCTCCTTATTTTCCCTATCTN
CCTATTTTTTAAACACAACCCCCNCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATATTTTC



Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       871 bp
GC level:         46.47 %
bases masked:        88 bp ( 10.10 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       1           88 bp    10.10 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000




Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  A08A08_CONSENSUS
        (871 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 1 Sequence

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 256 31 |===============================
   6310 225 39 |=======================================
   3980 186 36 |====================================
   2510 150 45 |=============================================
   1580 105 30 |==============================
   1000  75 20 |====================
    631  55 10 |==========
    398  45  5 |=====
    251  40  3 |===
    158  37  6 |======
    100  31  5 |=====
   63.1  26  0 |
   39.8  26  0 |
   25.1  26  3 |===
   15.8  23  0 |
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 23  <<<<<<<<<<<<<<<<<
   10.0  23  1 |=
   6.31  22  2 |==
   3.98  20  0 |
   2.51  20  0 |
   1.58  20  2 |==
   1.00  18  0 |
   0.63  18  1 |=
   0.40  17  0 |
   0.25  17  2 |==


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|6714404|gb|AAF26093.1|AC012393_19(AC012393) putati... +1   188  8.4e-18   2
gi|6671966|gb|AAF23225.1|AC013454_12(AC013454) putati... +1   188  1.6e-17   2
gi|7487999|pir||T02194pectinacetylesterase homolog F1... +1   182  2.2e-17   2
gi|11281560|pir||T47998pectinacetylesterase-like prot... +1   182  1.6e-16   2
gi|10176854|dbj|BAB10060.1|(AB005244) pectinacetylest... +1   152  1.6e-12   2
gi|7488883|pir||S68805pectin acetylesterase (EC 3.1.1... +1   154  7.1e-12   2
gi|9994092|gb|AAG12120.1|AC079730_16(AC079730) hypoth... +1   176  8.7e-12   1
gi|7487997|pir||T01197pectin acetylesterase homolog F... +1   176  9.0e-12   1
gi|7487998|pir||T05825pectin acetylesterase homolog T... +1   143  5.7e-11   2
gi|10176999|dbj|BAB10249.1|(AB020744) pectin acetyles... +1   137  5.1e-08   2
gi|3482930|gb|AAC33215.1|AAC33215(AC003970) Similar t... +1   127  7.8e-08   2
gi|6478931|gb|AAF14036.1|AC011436_20(AC011436) putati... +1   131  2.7e-07   2
gi|7488140|pir||T05824probable pectin acetylesterase ... +1   128  1.5e-06   2
gi|10140647|gb|AAG13483.1|AC026758_20(AC026758) putat... +1   124  0.00010   1
gi|6478941|gb|AAF14046.1|AC011436_30(AC011436) putati... +1   111  0.00029   2
gi|560554|gb|AAB31222.1|(S71728) truncated protein [S... -2    75  0.20      1
gi|560556|gb|AAB31223.1|(S71730) influenza virus hema... -2    75  0.20      1
gi|762925|emb|CAA59990.1|(X85998) elastin like protei... +3    77  0.46      1
gi|560558|gb|AAB31224.1|(S71742) influenza virus hema... -1    68  0.72      1
gi|560560|gb|AAB31225.1|(S71745) influenza virus hema... -1    68  0.72      1
gi|773414|gb|AAB05989.1|(U23751) beta galactosidase [... -2    75  0.99      1
gi|9294786|gb|AAF86670.1|AF178449_1(AF178449) beta-ga... -2    75  0.997     1
gi|7489187|pir||T02229protein BYJ15 - common tobacco ... +2    77  0.99990   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|762925              | _____                                            
                        __________________________________________________
Query sequence:        |        |        |       |        |       |       | 291
                       0       50      100     150      200     250


Locus_ID                Frame 2 Hits
gi|6714404             |              ____                                
gi|6671966             |              ____                                
gi|7487999             |              ____                                
gi|11281560            |              ____                                
gi|10176854            |              ___                                 
gi|7488883             |              __                                  
gi|7487998             |              __                                  
gi|10176999            |              __                                  
gi|3482930             |              ____                                
gi|6478931             |              ___                                 
gi|7488140             |              __                                  
gi|6478941             |              ___                                 
gi|7489187             | _____                                            
                        __________________________________________________
Query sequence:        |        |        |       |        |       |       | 291
                       0       50      100     150      200     250


Locus_ID                Frame 1 Hits
gi|6714404             |   ___________                                    
gi|6671966             |   ___________                                    
gi|7487999             |   ___________                                    
gi|11281560            |   ___________                                    
gi|10176854            |   ____________                                   
gi|7488883             |   ___________                                    
gi|9994092             |   _____________                                  
gi|7487997             |   _____________                                  
gi|7487998             |   ___________                                    
gi|10176999            |   ___________                                    
gi|3482930             |   ___________                                    
gi|6478931             |     _________                                    
gi|7488140             |   ___________                                    
gi|10140647            |     ___________                                  
gi|6478941             |   ___________                                    
                        __________________________________________________
Query sequence:        |        |        |       |        |       |       | 291
                       0       50      100     150      200     250


Locus_ID                Frame -1 Hits
gi|560558              |_____                                             
gi|560560              |_____                                             
                        __________________________________________________
Query sequence:        |        |        |       |        |       |       | 291
                       0       50      100     150      200     250


Locus_ID                Frame -2 Hits
gi|560554              | _____                                            
gi|560556              | _____                                            
gi|773414              | _____                                            
gi|9294786             | _____                                            
                        __________________________________________________
Query sequence:        |        |        |       |        |       |       | 291
                       0       50      100     150      200     250




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.



to_Entrezto_Relatedto_Related >gi|6714404|gb|AAF26093.1|AC012393_19  (AC012393) putative pectinacetylesterase
            [Arabidopsis thaliana]
            Length = 371

Frame  2 hits (HSPs):                      ____                           
Frame  1 hits (HSPs):              _________                              
                        __________________________________________________
Database sequence:     |                    |                   |         | 371
                       0                  150                 300

  Plus Strand HSPs:

 Score = 188 (66.2 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
 Identities = 35/63 (55%), Positives = 41/63 (65%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+ +  G    GGWCN   TCV++KTTR GSS YMEKQL  TG L +  + NPDFF W
Sbjct:    86 NSWLIQLEG----GGWCNNIRTCVYRKTTRRGSSNYMEKQLQFTGILSDKAQENPDFFNW 141

Query:   235 NXV 243
             N V
Sbjct:   142 NRV 144

 Score = 62 (21.8 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
 Identities = 12/20 (60%), Positives = 14/20 (70%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXEAAHL 307
             LR CDGA F+G  Q +AA L
Sbjct:   146 LRYCDGASFSGDGQNQAAQL 165


to_Entrezto_Relatedto_Related >gi|6671966|gb|AAF23225.1|AC013454_12  (AC013454) putative pectinacetylesterase
            [Arabidopsis thaliana]
            Length = 415

Frame  2 hits (HSPs):                    ___                              
Frame  1 hits (HSPs):             ________                                
                        __________________________________________________
Database sequence:     |                 |                  |             | 415
                       0               150                300

  Plus Strand HSPs:

 Score = 188 (66.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 35/63 (55%), Positives = 41/63 (65%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+ +  G    GGWCN   TCV++KTTR GSS YMEKQL  TG L +  + NPDFF W
Sbjct:    86 NSWLIQLEG----GGWCNNIRTCVYRKTTRRGSSNYMEKQLQFTGILSDKAQENPDFFNW 141

Query:   235 NXV 243
             N V
Sbjct:   142 NRV 144

 Score = 62 (21.8 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 12/20 (60%), Positives = 14/20 (70%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXEAAHL 307
             LR CDGA F+G  Q +AA L
Sbjct:   146 LRYCDGASFSGDGQNQAAQL 165


to_Entrezto_Relatedto_Related >gi|7487999|pir||T02194  pectinacetylesterase homolog F14M4.24 - Arabidopsis
            thaliana >gi|3522956|gb|AAC34238.1| (AC004411) putative
            pectinesterase [Arabidopsis thaliana]
            Length = 416

Frame  2 hits (HSPs):                    ___                              
Frame  1 hits (HSPs):             ________                                
                        __________________________________________________
Database sequence:     |                 |                 |              | 416
                       0               150               300

  Plus Strand HSPs:

 Score = 182 (64.1 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
 Identities = 34/63 (53%), Positives = 40/63 (63%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+ +  G    GGWCNT  +C+F+KTTR GSS +MEK L  TG L N    NPDFF W
Sbjct:    87 NRWLIQLEG----GGWCNTRRSCIFRKTTRRGSSNHMEKVLAFTGILSNKSNENPDFFNW 142

Query:   235 NXV 243
             N V
Sbjct:   143 NRV 145

 Score = 67 (23.6 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
 Identities = 13/20 (65%), Positives = 15/20 (75%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXEAAHL 307
             LR CDGA FTG SQ E++ L
Sbjct:   147 LRYCDGASFTGDSQDESSQL 166


to_Entrezto_Relatedto_Related >gi|11281560|pir||T47998  pectinacetylesterase-like protein T17J13.20 [imported]
            - Arabidopsis thaliana >gi|6899916|emb|CAB71866.1| (AL138651)
            pectinacetylesterase precursor-like protein [Arabidopsis thaliana]
            Length = 420

Frame  2 hits (HSPs):                    ___                              
Frame  1 hits (HSPs):             ________                                
                        __________________________________________________
Database sequence:     |                 |                 |              | 420
                       0               150               300

  Plus Strand HSPs:

 Score = 182 (64.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 33/63 (52%), Positives = 41/63 (65%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+ +  G    GGWCN   +CV++KT+R GSSK+MEK L  TG L N  E NPDFF W
Sbjct:    89 NSWLIQLEG----GGWCNNHRSCVYRKTSRRGSSKFMEKALAFTGILSNRSEENPDFFNW 144

Query:   235 NXV 243
             N +
Sbjct:   145 NRI 147

 Score = 59 (20.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 12/18 (66%), Positives = 13/18 (72%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXEAA 301
             LR CDGA F+G SQ E A
Sbjct:   149 LRYCDGASFSGDSQDEFA 166


to_Entrezto_Relatedto_Related >gi|10176854|dbj|BAB10060.1|  (AB005244) pectinacetylesterase [Arabidopsis
            thaliana]
            Length = 415

Frame  2 hits (HSPs):                  __                                 
Frame  1 hits (HSPs):           ________                                  
                        __________________________________________________
Database sequence:     |                 |                  |             | 415
                       0               150                300

  Plus Strand HSPs:

 Score = 152 (53.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 29/67 (43%), Positives = 37/67 (55%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N WI +  G    GGWCN   +CV +  TR GS++YM K +  TG L N    NPDF+ W
Sbjct:    69 NNWILQFEG----GGWCNDIASCVERAKTRRGSTRYMSKTVVFTGVLSNNASQNPDFYNW 124

Query:   235 NXVHXXF 255
             N V   +
Sbjct:   125 NKVRLRY 131

 Score = 52 (18.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 10/14 (71%), Positives = 10/14 (71%), Frame = +2

Query:   248 LRSCDGAXFTGXSQ 289
             LR CDGA F G SQ
Sbjct:   129 LRYCDGASFAGDSQ 142


to_Entrezto_Relatedto_Related >gi|7488883|pir||S68805  pectin acetylesterase (EC 3.1.1.-) precursor - mung
            bean >gi|1431629|emb|CAA67728.1| (X99348) pectinacetylesterase
            precursor [Vigna radiata]
            Length = 399

Frame  2 hits (HSPs):                  __                                 
Frame  1 hits (HSPs):          ________                                   
                        __________________________________________________
Database sequence:     |                  |                  |            | 399
                       0                150                300

  Plus Strand HSPs:

 Score = 154 (54.2 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
 Identities = 28/63 (44%), Positives = 37/63 (58%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N WI    G    GGWCN  T+C+ ++ TR GSSK M+ QL  +G   N  + NPDF+ W
Sbjct:    61 NNWIVHFEG----GGWCNNVTSCLSRRDTRLGSSKKMDTQLSFSGFFSNSKKFNPDFYDW 116

Query:   235 NXV 243
             N +
Sbjct:   117 NRI 119

 Score = 43 (15.1 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
 Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +2

Query:   248 LRSCDGAXFTG 280
             +R CDG+ FTG
Sbjct:   121 VRYCDGSSFTG 131


to_Entrezto_Relatedto_Related >gi|9994092|gb|AAG12120.1|AC079730_16  (AC079730) hypothetical protein;
            20269-18101 [Arabidopsis thaliana]
            >gi|12321351|gb|AAG50747.1|AC079733_15 (AC079733)
            pectinacetylesterase precursor, putative [Arabidopsis thaliana]
            Length = 417

Frame  1 hits (HSPs):             _________                               
                        __________________________________________________
Database sequence:     |                 |                 |              | 417
                       0               150               300

  Plus Strand HSPs:

 Score = 176 (62.0 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 33/73 (45%), Positives = 43/73 (58%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+ +  G    GGWC+T   CV++KTTR GSS YMEK++  TG L +    NPDF+ W
Sbjct:    87 NNWLVQLEG----GGWCDTIRNCVYRKTTRRGSSSYMEKEIPFTGILSDKAADNPDFYNW 142

Query:   235 NXVHXXFL*WGXF 273
             N V   +   G F
Sbjct:   143 NRVKVRYCDGGSF 155


to_Entrezto_Relatedto_Related >gi|7487997|pir||T01197  pectin acetylesterase homolog F21E10.11 - Arabidopsis
            thaliana >gi|3047082|gb|AAC13595.1| (AF058914) similar to Vigna
            radiata pectinacetylesterase precursor (GB:X99348) [Arabidopsis
            thaliana]
            Length = 422

Frame  1 hits (HSPs):             _________                               
                        __________________________________________________
Database sequence:     |                 |                 |              | 422
                       0               150               300

  Plus Strand HSPs:

 Score = 176 (62.0 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 33/73 (45%), Positives = 42/73 (57%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+ +  G    GGWC+    CV++K +R GSS YMEKQ+  TG L N  + NPDFF W
Sbjct:    87 NSWLIQLEG----GGWCDNIRNCVYRKKSRRGSSNYMEKQIQFTGILSNKAQENPDFFNW 142

Query:   235 NXVHXXFL*WGXF 273
             N V   +   G F
Sbjct:   143 NRVKLRYCDGGSF 155


to_Entrezto_Relatedto_Related >gi|7487998|pir||T05825  pectin acetylesterase homolog T5K18.200 - Arabidopsis
            thaliana >gi|3080372|emb|CAA18629.1| (AL022580) putative
            pectinacetylesterase [Arabidopsis thaliana]
            >gi|7268737|emb|CAB78944.1| (AL161550) putative
            pectinacetylesterase [Arabidopsis thaliana]
            Length = 263

Frame  2 hits (HSPs):                   ___                               
Frame  1 hits (HSPs):       _____________                                 
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 263
                       0        50      100       150      200       250

  Plus Strand HSPs:

 Score = 143 (50.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
 Identities = 28/63 (44%), Positives = 34/63 (53%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N    R A  +  GGWCN  T CV +  TR GSSK M + L  +  L N  + NPDF+ W
Sbjct:    26 NITFVRNAVAKGAGGWCNNVTNCVSRMHTRLGSSKKMVENLAFSAILSNKKQYNPDFYNW 85

Query:   235 NXV 243
             N V
Sbjct:    86 NRV 88

 Score = 46 (16.2 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
 Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +2

Query:   248 LRSCDGAXFTG 280
             +R CDGA FTG
Sbjct:    90 VRYCDGASFTG 100


to_Entrezto_Relatedto_Related >gi|10176999|dbj|BAB10249.1|  (AB020744) pectin acetylesterase [Arabidopsis
            thaliana]
            Length = 391

Frame  2 hits (HSPs):                 ___                                 
Frame  1 hits (HSPs):          ________                                   
                        __________________________________________________
Database sequence:     |                   |                  |           | 391
                       0                 150                300

  Plus Strand HSPs:

 Score = 137 (48.2 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
 Identities = 27/63 (42%), Positives = 32/63 (50%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N WI    G    GGWC    TCV +K+T  GSSK M K    +G L      NPDF+ W
Sbjct:    58 NNWIVHMEG----GGWCTDIATCVQRKSTMKGSSKLMNKDFGFSGILGGKQSTNPDFYNW 113

Query:   235 NXV 243
             N +
Sbjct:   114 NRI 116

 Score = 43 (15.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
 Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +2

Query:   248 LRSCDGAXFTG 280
             +R CDG+ FTG
Sbjct:   118 VRYCDGSSFTG 128


to_Entrezto_Relatedto_Related >gi|3482930|gb|AAC33215.1|AAC33215  (AC003970) Similar to pectinacetylesterase
            [Arabidopsis thaliana]
            Length = 363

Frame  2 hits (HSPs):                  ___                                
Frame  1 hits (HSPs):         _________                                   
                        __________________________________________________
Database sequence:     |                    |                    |        | 363
                       0                  150                  300

  Plus Strand HSPs:

 Score = 127 (44.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 26/63 (41%), Positives = 33/63 (52%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N WI +  G    G WC++   C  +K +  GSS  MEK+L   G L N    NPDF+ W
Sbjct:    51 NNWIIQLQG----GAWCDSIQNCQSRKGSGYGSSTLMEKELAFLGLLSNKAAENPDFYNW 106

Query:   235 NXV 243
             N V
Sbjct:   107 NKV 109

 Score = 57 (20.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 11/20 (55%), Positives = 14/20 (70%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXEAAHL 307
             +R CDGA F G S+ +AA L
Sbjct:   111 VRYCDGASFDGDSENKAAQL 130


to_Entrezto_Relatedto_Related >gi|6478931|gb|AAF14036.1|AC011436_20  (AC011436) putative pectinacetylesterase
            [Arabidopsis thaliana]
            Length = 427

Frame  2 hits (HSPs):                     __                              
Frame  1 hits (HSPs):               ______                                
                        __________________________________________________
Database sequence:     |                 |                 |              | 427
                       0               150               300

  Plus Strand HSPs:

 Score = 131 (46.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
 Identities = 22/50 (44%), Positives = 30/50 (60%), Frame = +1

Query:    94 GGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXWNXV 243
             GGWCNT  +C  +  T+ GSS Y E+++   G L +    NP+FF WN V
Sbjct:   104 GGWCNTVASCSARALTKLGSSNYFEQEVAFQGVLSSDPSQNPEFFNWNKV 153

 Score = 48 (16.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
 Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXE 295
             +R CDGA F+G  + E
Sbjct:   155 IRYCDGASFSGRPEAE 170


to_Entrezto_Relatedto_Related >gi|7488140|pir||T05824  probable pectin acetylesterase (EC 3.1.1.-) -
            Arabidopsis thaliana >gi|3080371|emb|CAA18628.1| (AL022580)
            putative pectinacetylesterase protein [Arabidopsis thaliana]
            >gi|7268736|emb|CAB78943.1| (AL161550) putative
            pectinacetylesterase protein [Arabidopsis thaliana]
            Length = 362

Frame  2 hits (HSPs):                   __                                
Frame  1 hits (HSPs):          _________                                  
                        __________________________________________________
Database sequence:     |                    |                    |        | 362
                       0                  150                  300

  Plus Strand HSPs:

 Score = 128 (45.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 25/63 (39%), Positives = 31/63 (49%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N WI    G    GGWC    +C  +K T  GSSK+M K    +G L      NPDF+ W
Sbjct:    58 NNWIVHMEG----GGWCTDVASCNERKGTMKGSSKFMNKDFGFSGILGGKQSTNPDFYNW 113

Query:   235 NXV 243
             N +
Sbjct:   114 NRI 116

 Score = 43 (15.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +2

Query:   248 LRSCDGAXFTG 280
             +R CDG+ FTG
Sbjct:   118 VRYCDGSSFTG 128


to_Entrezto_Relatedto_Related >gi|10140647|gb|AAG13483.1|AC026758_20  (AC026758) putative pectin
            acetylesterase [Oryza sativa]
            Length = 394

Frame  1 hits (HSPs):                _________                            
                        __________________________________________________
Database sequence:     |                  |                  |            | 394
                       0                150                300

  Plus Strand HSPs:

 Score = 124 (43.7 bits), Expect = 0.00010, P = 0.00010
 Identities = 23/60 (38%), Positives = 32/60 (53%), Frame = +1

Query:    94 GGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXWNXVHXXFL*WGXF 273
             GGWCN   +C  +  TR GS++ M+     +G L N  + NPDF+ WN V   +   G F
Sbjct:   110 GGWCNDAPSCAERAGTRRGSTRSMDSLEVFSGLLSNDPDMNPDFYNWNRVKLRYCDGGSF 169


to_Entrezto_Relatedto_Related >gi|6478941|gb|AAF14046.1|AC011436_30  (AC011436) putative pectinacetylesterase
            [Arabidopsis thaliana]
            Length = 409

Frame  2 hits (HSPs):                    ___                              
Frame  1 hits (HSPs):             ________                                
                        __________________________________________________
Database sequence:     |                  |                 |             | 409
                       0                150               300

  Plus Strand HSPs:

 Score = 111 (39.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 24/63 (38%), Positives = 31/63 (49%), Frame = +1

Query:    55 NXWIPRAAGXRHXGGWCNTTTTCVFKKTTRXGSSKYMEKQLXSTGXLXNXXE*NPDFFXW 234
             N W+    G    GG C T  +C  +  TR GSS + E ++   G L +    NPDFF W
Sbjct:    85 NSWLLYLEG----GGGCRTIESCSARAMTRLGSSNFFEHEVPFFGVLSSDPSQNPDFFNW 140

Query:   235 NXV 243
             N V
Sbjct:   141 NRV 143

 Score = 46 (16.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +2

Query:   248 LRSCDGAXFTGXSQXE 295
             +R CDGA F+G  + E
Sbjct:   145 IRYCDGACFSGHPEAE 160


to_Entrezto_Relatedto_Related >gi|560554|gb|AAB31222.1|  (S71728) truncated protein [Saccharomyces cerevisiae]
            Length = 33

Frame -2 hits (HSPs):            _________________________________        
                        __________________________________________________
Database sequence:     |                            |                     | 33
                       0                           20

  Minus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.23, P = 0.20
 Identities = 13/22 (59%), Positives = 15/22 (68%), Frame = -2

Query:    96 SXVPXSCXPGDPXVVERLPRRW 31
             S +  SC PGDP V+ER P RW
Sbjct:     7 SLISNSCSPGDPLVLERPPPRW 28


to_Entrezto_Relatedto_Related >gi|560556|gb|AAB31223.1|  (S71730) influenza virus hemagglutinin 5' epitope
            tag=fusion protein {N-terminal, frame 1} [Saccharomyces
            cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
            Synthetic Partial, 45 aa]
            Length = 45

Frame -2 hits (HSPs):                       ________________________      
                        __________________________________________________
Database sequence:     |                     |                     |      | 45
                       0                    20                    40

  Minus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 0.23, P = 0.20
 Identities = 13/22 (59%), Positives = 15/22 (68%), Frame = -2

Query:    96 SXVPXSCXPGDPXVVERLPRRW 31
             S +  SC PGDP V+ER P RW
Sbjct:    19 SLISNSCSPGDPLVLERPPPRW 40


to_Entrezto_Relatedto_Related >gi|762925|emb|CAA59990.1|  (X85998) elastin like protein [Drosophila
            melanogaster]
            Length = 110

Frame  3 hits (HSPs):   ___________                                       
                        __________________________________________________
Database sequence:     |        |        |        |        |         |    | 110
                       0       20       40       60       80       100

  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 0.62, P = 0.46
 Identities = 16/23 (69%), Positives = 18/23 (78%), Frame = +3

Query:    30 STAVEAALQLLDPPGXRKXARXR 98
             STAV AAL+L+DPPG R  AR R
Sbjct:     3 STAVAAALELVDPPGCRNSARDR 25


to_Entrezto_Relatedto_Related >gi|560558|gb|AAB31224.1|  (S71742) influenza virus hemagglutinin 5' epitope
            tag=fusion protein {N-terminal} [Saccharomyces cerevisiae=yeast,
            YCpIF15,16,17 cloning vector, Peptide Plasmid Synthetic Partial, 50
            aa]
            Length = 50

Frame -1 hits (HSPs):                               ______________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 50
                       0                  20                  40

  Minus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 1.3, P = 0.72
 Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1

Query:    82 FLXPGGSXSCRAASTAVEXYVA 17
             FL PGGS S RAA+TAVE   A
Sbjct:    29 FLQPGGSTSSRAAATAVELQFA 50


to_Entrezto_Relatedto_Related >gi|560560|gb|AAB31225.1|  (S71745) influenza virus hemagglutinin 5' epitope
            tag=fusion protein {N-terminal, frame 3} [Saccharomyces
            cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
            Synthetic Partial, 56 aa]
            Length = 56

Frame -1 hits (HSPs):                                 ____________________
                        __________________________________________________
Database sequence:     |                |                 |               | 56
                       0               20                40

  Minus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 1.3, P = 0.72
 Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1

Query:    82 FLXPGGSXSCRAASTAVEXYVA 17
             FL PGGS S RAA+TAVE   A
Sbjct:    35 FLQPGGSTSSRAAATAVELQFA 56


to_Entrezto_Relatedto_Related >gi|773414|gb|AAB05989.1|  (U23751) beta galactosidase [Cloning vector
            pBBR1MCS-2] >gi|833819|gb|AAB06689.1| (U25059) LacZ alpha peptide
            [Cloning vector pBBR1MCS-3] >gi|833823|gb|AAB06692.1| (U25060) LacZ
            alpha peptide [Cloning vector pBBR1MCS-4] >gi|833827|gb|AAB06695.1|
            (U25061) LacZ alpha peptide [Cloning vector pBBR1MCS-5]
            Length = 121

Frame -2 hits (HSPs):               __________                            
                        __________________________________________________
Database sequence:     |                    |                   |         | 121
                       0                   50                 100

  Minus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 4.3, P = 0.99
 Identities = 13/22 (59%), Positives = 15/22 (68%), Frame = -2

Query:    96 SXVPXSCXPGDPXVVERLPRRW 31
             S +  SC PGDP V+ER P RW
Sbjct:    32 SLISNSCSPGDPLVLERPPPRW 53


to_Entrezto_Relatedto_Related >gi|9294786|gb|AAF86670.1|AF178449_1  (AF178449) beta-galactosidase alpha
            peptide [Integration vector pCD11PKS]
            >gi|9294795|gb|AAF86676.1|AF178452_1 (AF178452) beta-galactosidase
            alpha peptide [Integration vector pCD13PKS]
            Length = 127

Frame -2 hits (HSPs):               _________                             
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Minus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 5.7, P = 1.0
 Identities = 13/22 (59%), Positives = 15/22 (68%), Frame = -2

Query:    96 SXVPXSCXPGDPXVVERLPRRW 31
             S +  SC PGDP V+ER P RW
Sbjct:    32 SLISNSCSPGDPLVLERPPPRW 53


to_Entrezto_Relatedto_Related >gi|7489187|pir||T02229  protein BYJ15 - common tobacco (fragment)
            >gi|2280518|dbj|BAA21615.1| (AB005878) BYJ15 [Nicotiana tabacum]
            Length = 172

Frame  2 hits (HSPs):   _______                                           
                        __________________________________________________
Database sequence:     |              |             |              |      | 172
                       0             50           100            150

  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 9.2, P = 1.0
 Identities = 15/23 (65%), Positives = 16/23 (69%), Frame = +2

Query:    23 IXLHRRGSRSTTXGSPGXQEXGT 91
             + LHR G RS T GSPG QE GT
Sbjct:     1 LELHRGGGRSRTSGSPGLQEFGT 23


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.83

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.341   0.152   0.524  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.328   0.148   0.490  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.334   0.150   0.573  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.331   0.145   0.489  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.333   0.153   0.534  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.346   0.159   0.555  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      289       187       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      290       196       10.  76 3  12 22  0.092   35
                                                    31  0.10    38
   +1      0      290       198       10.  76 3  12 22  0.093   35
                                                    31  0.10    38
   -1      0      290       187       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      290       194       10.  76 3  12 22  0.091   35
                                                    31  0.10    38
   -3      0      289       199       10.  77 3  12 22  0.093   35
                                                    31  0.10    38


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  23
  No. of states in DFA:  592 (58 KB)
  Total size of DFA:  201 KB (256 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  184.19u 1.09s 185.28t  Elapsed: 00:00:32
  Total cpu time:  184.21u 1.13s 185.34t  Elapsed: 00:00:32
  Start:  Mon Oct  1 20:47:24 2001   End:  Mon Oct  1 20:47:56 2001



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000