BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= AA00632
(149 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42629573|ref|ZP_00155119.1| COG1974: SOS-response transc... 190 2e-47
gi|145632936|ref|ZP_01788669.1| 5-methylaminomethyl-2-thiou... 190 3e-47
gi|145637560|ref|ZP_01793217.1| ImpA [Haemophilus influenza... 189 4e-47
gi|148826798|ref|YP_001291551.1| ImpA [Haemophilus influenz... 189 4e-47
gi|46133409|ref|ZP_00157158.2| COG1974: SOS-response transc... 187 1e-46
gi|145631786|ref|ZP_01787546.1| ImpA [Haemophilus influenza... 187 1e-46
gi|145642061|ref|ZP_01797632.1| ImpA [Haemophilus influenza... 187 1e-46
gi|15602757|ref|NP_245829.1| ImpA [Pasteurella multocida su... 187 2e-46
gi|145634887|ref|ZP_01790594.1| ImpA [Haemophilus influenza... 187 2e-46
gi|52424886|ref|YP_088023.1| hypothetical protein MS0831 [M... 186 4e-46
gi|152978620|ref|YP_001344249.1| putative prophage represso... 167 2e-40
gi|113461235|ref|YP_719304.1| ImpA protein [Haemophilus som... 162 6e-39
gi|53728559|ref|ZP_00348180.1| COG1974: SOS-response transc... 157 2e-37
gi|16273446|ref|NP_439695.1| ImpA [Haemophilus influenzae R... 149 3e-35
gi|32035808|ref|ZP_00135652.1| COG1974: SOS-response transc... 118 9e-26
gi|33152192|ref|NP_873545.1| hypothetical protein HD1063 [H... 103 3e-21
gi|145629717|ref|ZP_01785513.1| ImpA [Haemophilus influenza... 102 9e-21
gi|153093551|gb|EDN74531.1| possible LexA family repressor/... 88 1e-16
gi|145629718|ref|ZP_01785514.1| 5-methylaminomethyl-2-thiou... 81 2e-14
gi|38505658|ref|NP_942279.1| hypothetical protein sll5123 [... 62 7e-09
gi|95929179|ref|ZP_01311923.1| putative prophage repressor ... 62 1e-08
gi|77543205|gb|ABA87017.1| RumA [Vibrio cholerae] 59 6e-08
gi|153800437|ref|ZP_01955023.1| protein UmuD [Vibrio choler... 59 7e-08
gi|117925371|ref|YP_865988.1| putative prophage repressor [... 59 7e-08
gi|120597913|ref|YP_962487.1| putative prophage repressor [... 59 1e-07
gi|862632|gb|AAC45831.1| RumA(R391) [IncJ plasmid R391] >gi... 59 1e-07
gi|116189900|ref|ZP_01479645.1| hypothetical protein VchoM_... 58 1e-07
gi|54294587|ref|YP_127002.1| hypothetical protein lpl1663 [... 57 2e-07
gi|52841932|ref|YP_095731.1| SOS (error prone) mutagenesis ... 57 2e-07
gi|148359239|ref|YP_001250446.1| SOS (error prone) mutagene... 57 2e-07
gi|71559074|ref|YP_271801.1| SamA [Salmonella enterica] >gi... 57 3e-07
gi|116006845|ref|YP_788028.1| ImpA UV protection protein [E... 56 7e-07
gi|113949783|ref|ZP_01435426.1| putative prophage repressor... 55 9e-07
gi|126174565|ref|YP_001050714.1| putative prophage represso... 55 9e-07
gi|9507468|ref|NP_052475.1| hypothetical protein ColIb-P9_p... 55 1e-06
gi|12084966|ref|NP_073259.1| SamA [Salmonella enterica subs... 55 1e-06
gi|75236510|ref|ZP_00720602.1| COG1974: SOS-response transc... 55 1e-06
gi|89091943|ref|ZP_01164898.1| UmuD [Oceanospirillum sp. ME... 55 1e-06
gi|95020387|gb|ABF50720.1| UV repair protein [Vibrio cholerae] 55 1e-06
gi|119640088|gb|ABL85463.1| ImpA [Escherichia coli] 55 1e-06
gi|56750016|ref|YP_170717.1| DNA polymerase V [Synechococcu... 54 3e-06
gi|152987517|ref|YP_001345496.1| protein MucA [Pseudomonas ... 54 3e-06
gi|87120542|ref|ZP_01076436.1| UmuD protein; UmuD' protein ... 54 3e-06
gi|73853267|ref|YP_308763.1| hypothetical protein LH0099 [E... 54 4e-06
gi|83586522|ref|ZP_00925155.1| COG1974: SOS-response transc... 53 4e-06
>gi|42629573|ref|ZP_00155119.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Haemophilus influenzae R2846]
Length = 146
Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/149 (64%), Positives = 121/149 (81%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN +L+ +LVVLE NNEFHVYEF+AH+ G ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNGDLYSGDLVVLEENNEFHVYEFMAHS-GNYLFMALDSTTQNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPIVGTVTN IHQ++R+N M++AA
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRNKMKWAA 146
>gi|145632936|ref|ZP_01788669.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae 3655]
gi|144986592|gb|EDJ93158.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae 3655]
Length = 146
Score = 190 bits (482), Expect = 3e-47, Method: Composition-based stats.
Identities = 97/149 (65%), Positives = 122/149 (81%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+AH NG ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMAH-NGNYLFMALDSTTQNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPIVGTVTN IHQ++R+N M++AA
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRNKMKWAA 146
>gi|145637560|ref|ZP_01793217.1| ImpA [Haemophilus influenzae PittHH]
gi|145269246|gb|EDK09192.1| ImpA [Haemophilus influenzae PittHH]
Length = 146
Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats.
Identities = 96/149 (64%), Positives = 122/149 (81%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +L+VLE NNEFHVYEF+AH NG ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLIVLEENNEFHVYEFMAH-NGNYLFMALDSTTQNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPIVGTVTN IHQ++R+N M++AA
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRNKMKWAA 146
>gi|148826798|ref|YP_001291551.1| ImpA [Haemophilus influenzae PittGG]
gi|148718040|gb|ABQ99167.1| ImpA [Haemophilus influenzae PittGG]
Length = 146
Score = 189 bits (480), Expect = 4e-47, Method: Composition-based stats.
Identities = 96/149 (64%), Positives = 121/149 (81%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+AH NG ++F++LDS T NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMAH-NGNYLFMALDSTTPNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPI+GTVTN IHQ++R+N M++AA
Sbjct: 118 KDWSNLPIIGTVTNTIHQMKRRNKMKWAA 146
>gi|46133409|ref|ZP_00157158.2| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Haemophilus influenzae R2866]
gi|68249939|ref|YP_249051.1| ImpA [Haemophilus influenzae 86-028NP]
gi|145639088|ref|ZP_01794696.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae PittII]
gi|148826068|ref|YP_001290821.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae PittEE]
gi|68058138|gb|AAX88391.1| ImpA [Haemophilus influenzae 86-028NP]
gi|145272060|gb|EDK11969.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae PittII]
gi|148716228|gb|ABQ98438.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae PittEE]
Length = 146
Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/149 (63%), Positives = 121/149 (81%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+ H+ G ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMTHS-GNYLFMALDSTTQNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPIVGTVTN IHQ++R+N M++AA
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRNKMKWAA 146
>gi|145631786|ref|ZP_01787546.1| ImpA [Haemophilus influenzae 22.4-21]
gi|144982576|gb|EDJ90126.1| ImpA [Haemophilus influenzae R3021]
Length = 146
Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/148 (64%), Positives = 121/148 (81%), Gaps = 3/148 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+AH NG ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMAH-NGNYLFMALDSTTQNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFA 148
DW LPIVGTVTN IHQ++R++ M++A
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRDKMKWA 145
>gi|145642061|ref|ZP_01797632.1| ImpA [Haemophilus influenzae R3021]
gi|145273241|gb|EDK13116.1| ImpA [Haemophilus influenzae 22.4-21]
Length = 146
Score = 187 bits (475), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/149 (63%), Positives = 120/149 (80%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+ H+ G ++F++LDS T NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMVHS-GNYLFMALDSTTPNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPIVGTVTN IHQ++R+N M++AA
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRNKMKWAA 146
>gi|15602757|ref|NP_245829.1| ImpA [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721205|gb|AAK02976.1| ImpA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 149
Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats.
Identities = 90/149 (60%), Positives = 116/149 (77%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN N+ Q+D SY+PMP ++D++Q++L F+KKLDLNLYC++RPQQTCFIRVTNPNM
Sbjct: 1 MNSINNTVAQHDYLLSYRPMPLYEDIQQSHLNFSKKLDLNLYCVKRPQQTCFIRVTNPNM 60
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+V DML+VEKN L V +L+VL++N +FH+YEF+ N E+VF +LDS NIK
Sbjct: 61 LAWGIEVDDMLVVEKNESLSVGDLIVLDINGQFHIYEFMLQQNNEYVFFALDSTQSNIKT 120
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
W+ LPIVGTVTN IHQ++ K M FAA
Sbjct: 121 NHWQSLPIVGTVTNTIHQIKPKRNMAFAA 149
>gi|145634887|ref|ZP_01790594.1| ImpA [Haemophilus influenzae PittAA]
gi|145267753|gb|EDK07750.1| ImpA [Haemophilus influenzae PittAA]
Length = 146
Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats.
Identities = 94/149 (63%), Positives = 121/149 (81%), Gaps = 3/149 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKI 120
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+ H+ G ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMTHS-GNYLFMALDSTTQNINT 117
Query: 121 ADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
DW LPIVGTVTN IHQ++R++ M++AA
Sbjct: 118 KDWSNLPIVGTVTNTIHQMKRRDKMKWAA 146
>gi|52424886|ref|YP_088023.1| hypothetical protein MS0831 [Mannheimia succiniciproducens MBEL55E]
gi|52306938|gb|AAU37438.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 154
Score = 186 bits (472), Expect = 4e-46, Method: Composition-based stats.
Identities = 90/153 (58%), Positives = 116/153 (75%), Gaps = 4/153 (2%)
Query: 1 MNYQNHAAVQ----NDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVT 56
MNY HA Q + FSY PMPF++D +Q F+KKLDLNLYCI+RPQQTCFIRV
Sbjct: 2 MNYVAHAKDQALTAHHDLFSYHPMPFYEDTEQTRSRFHKKLDLNLYCIKRPQQTCFIRVQ 61
Query: 57 NPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTE 116
NP+++AWGI+ GDML+VEKN+ L + +L+V+EVN + ++EFIA+ EFVFLSL SK
Sbjct: 62 NPDLMAWGIEQGDMLVVEKNDSLSIGDLIVIEVNQKLEIFEFIAYDKNEFVFLSLSSKLN 121
Query: 117 NIKIADWRKLPIVGTVTNVIHQLQRKNTMRFAA 149
NI+ A+W LPI+GTVTN IHQ++ KNT+ FAA
Sbjct: 122 NIRTANWSTLPIIGTVTNTIHQMKPKNTISFAA 154
>gi|152978620|ref|YP_001344249.1| putative prophage repressor [Actinobacillus succinogenes 130Z]
gi|150840343|gb|ABR74314.1| putative prophage repressor [Actinobacillus succinogenes 130Z]
Length = 145
Score = 167 bits (422), Expect = 2e-40, Method: Composition-based stats.
Identities = 91/152 (59%), Positives = 113/152 (74%), Gaps = 10/152 (6%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDD--MKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNP 58
MNY A QND FSYQP+PFF+D M N +++KLDLNLYCI+RPQQTCFIRVTNP
Sbjct: 1 MNYAIRA--QND--FSYQPIPFFEDHAMTSN---YSRKLDLNLYCIKRPQQTCFIRVTNP 53
Query: 59 NMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENI 118
+MLAWGI+ GDML+VEK+ EL V +LVV+E N+ +YEF+ NGEFV SL SK+ NI
Sbjct: 54 DMLAWGIEQGDMLVVEKSEELAVGDLVVIESGNKMEIYEFVTQNNGEFVLFSLSSKSTNI 113
Query: 119 KIADWRKLPIVGTVTNVIHQLQ-RKNTMRFAA 149
K + L IVG VTN IHQ++ R+NT++F A
Sbjct: 114 KTHNLTSLNIVGVVTNTIHQIKPRRNTIKFVA 145
>gi|113461235|ref|YP_719304.1| ImpA protein [Haemophilus somnus 129PT]
gi|112823278|gb|ABI25367.1| ImpA protein [Haemophilus somnus 129PT]
Length = 151
Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats.
Identities = 83/151 (54%), Positives = 115/151 (76%), Gaps = 2/151 (1%)
Query: 1 MNYQNHAAVQN-DQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPN 59
M Y N N + + SYQPMPFF D+++ N +KKLDLNLYCI+ PQQTCFI+V NPN
Sbjct: 1 MGYANQNISSNINTTLSYQPMPFFIDIEERNRSSHKKLDLNLYCIKHPQQTCFIQVNNPN 60
Query: 60 MLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIK 119
+LAW I+ GD+LIVEK N L + +LVVL++NN+F +YEF+ H N EF+F LD+K +I+
Sbjct: 61 LLAWNIEQGDILIVEKQNYLSMNDLVVLDLNNQFQIYEFMMHENNEFIFFPLDNKVHSIR 120
Query: 120 IADWRKLPIVGTVTNVIHQLQ-RKNTMRFAA 149
++W+ LPI+GTVTN IHQ++ ++N ++FAA
Sbjct: 121 TSNWQTLPIIGTVTNTIHQIKPKENQIKFAA 151
>gi|53728559|ref|ZP_00348180.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Haemophilus somnus 2336]
Length = 155
Score = 157 bits (396), Expect = 2e-37, Method: Composition-based stats.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 6/155 (3%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLN-----LYCIRRPQQTCFIRV 55
M Y N + + SYQPMPFF D+++ N +KKLDLN LYCI+ PQQTCFI+V
Sbjct: 1 MGYANQNISNINTTLSYQPMPFFIDIEERNRSSHKKLDLNHYCLNLYCIKHPQQTCFIQV 60
Query: 56 TNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKT 115
NPN+LAW I+ GD+LIVEK N L + +LVVL++NN+F +YEF+ H N EF+F LD+K
Sbjct: 61 NNPNLLAWNIEQGDILIVEKQNYLSMNDLVVLDLNNQFQIYEFMMHENNEFIFFPLDNKV 120
Query: 116 ENIKIADWRKLPIVGTVTNVIHQLQ-RKNTMRFAA 149
+I+ ++W+ LPI+GTVTN IHQ++ ++N ++FAA
Sbjct: 121 HSIRTSNWQNLPIIGTVTNTIHQIKPKENQIKFAA 155
>gi|16273446|ref|NP_439695.1| ImpA [Haemophilus influenzae Rd KW20]
gi|1175889|sp|P44249|Y1546_HAEIN Uncharacterized protein HI1546
gi|1574391|gb|AAC23196.1| impA protein, putative [Haemophilus influenzae Rd KW20]
Length = 140
Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats.
Identities = 77/118 (65%), Positives = 98/118 (83%), Gaps = 3/118 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENI 118
LAWGI+ GDML+VEKN++L+ +LVVLE NNEFHVYEF+AH+ G ++F++LDS T+NI
Sbjct: 59 LAWGIESGDMLVVEKNDDLYSGDLVVLEENNEFHVYEFMAHS-GNYLFMALDSTTQNI 115
>gi|32035808|ref|ZP_00135652.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126207844|ref|YP_001053069.1| hypothetical protein APL_0360 [Actinobacillus pleuropneumoniae L20]
gi|126096636|gb|ABN73464.1| hypothetical protein APL_0360 [Actinobacillus pleuropneumoniae L20]
Length = 151
Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats.
Identities = 58/141 (41%), Positives = 92/141 (65%), Gaps = 8/141 (5%)
Query: 13 QSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLI 72
+ YQP+P + DM + KLDLN CI+RP +T FI+V NPN++AWGI++ D+LI
Sbjct: 9 RELPYQPLPMYRDMNSER---SIKLDLNSLCIKRPTETFFIQVKNPNLIAWGIELDDLLI 65
Query: 73 VEKNNELFVEELVVLEVNNEFHVYEF---IAHTNG--EFVFLSLDSKTENIKIADWRKLP 127
VE++ + V +L+V+E N E+ Y+F I ++ G E + SLD + N++I DW+++
Sbjct: 66 VEQSEQYLVNDLIVIEKNGEYKFYQFFNEIENSVGTREIILFSLDVREPNLRITDWQEIE 125
Query: 128 IVGTVTNVIHQLQRKNTMRFA 148
I G +TNV+HQ++ K+ A
Sbjct: 126 IAGVITNVVHQMRHKSAQTAA 146
>gi|33152192|ref|NP_873545.1| hypothetical protein HD1063 [Haemophilus ducreyi 35000HP]
gi|33148414|gb|AAP95934.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 151
Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 8/135 (5%)
Query: 13 QSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLI 72
+ YQP+ + D+ N + KLDLN CI+RP +T FI+V NP+++AWGI++ D+LI
Sbjct: 9 RELPYQPIRMYRDL---NTERSIKLDLNSLCIKRPTETFFIQVKNPHLIAWGIELDDLLI 65
Query: 73 VEKNNELFVEELVVLEVNNEFHVYEF---IAHTNG--EFVFLSLDSKTENIKIADWRKLP 127
VE+ + +L+V+E NNE+ Y+F I + G E + SLD N+ I DW+ +
Sbjct: 66 VEQPYSYLINDLLVIEKNNEYKFYQFFNEIENKTGQKEKILFSLDVSEPNLHIQDWQSIK 125
Query: 128 IVGTVTNVIHQLQRK 142
I G +TNV+HQ++ +
Sbjct: 126 IAGVITNVVHQIRHR 140
>gi|145629717|ref|ZP_01785513.1| ImpA [Haemophilus influenzae 22.1-21]
gi|144978054|gb|EDJ87833.1| ImpA [Haemophilus influenzae 22.1-21]
Length = 74
Score = 102 bits (253), Expect = 9e-21, Method: Composition-based stats.
Identities = 51/75 (68%), Positives = 61/75 (81%), Gaps = 2/75 (2%)
Query: 1 MNYQNHAAVQNDQSFSYQPMPFFDDMKQNNLFFNKKLDLNLYCIRRPQQTCFIRVTNPNM 60
MN Q A Q + FSY P+PFF D+ ++NL FNKKLDLNLYCI+RP+QTCFI +TNPNM
Sbjct: 1 MNNQT-LATQYEMDFSYNPLPFFSDI-EDNLKFNKKLDLNLYCIKRPKQTCFIHITNPNM 58
Query: 61 LAWGIDVGDMLIVEK 75
LAWGI+ GDML+VEK
Sbjct: 59 LAWGIESGDMLVVEK 73
>gi|153093551|gb|EDN74531.1| possible LexA family repressor/S24 family protease [Mannheimia
haemolytica PHL213]
Length = 112
Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 47 PQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAH-TNG- 104
P+ T FI V NPN++AWGI++ D+LIVE+ N+ V +L+VLE + E+ Y+F NG
Sbjct: 1 PRDTFFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGE 60
Query: 105 ---EFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRK 142
E + SLD N++I DW ++ I G +TNV+HQ++ +
Sbjct: 61 GIAEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTR 101
>gi|145629718|ref|ZP_01785514.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae 22.1-21]
gi|144978055|gb|EDJ87834.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Haemophilus
influenzae 22.1-21]
Length = 63
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Query: 86 VLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKNTM 145
+LE NNEFHVYEF+ H+ G ++F++LDS T+NI DW LPIVGTVTN IHQ++R+N M
Sbjct: 1 MLEENNEFHVYEFMTHS-GNYLFMALDSTTQNINTKDWSNLPIVGTVTNTIHQMKRRNKM 59
Query: 146 RFAA 149
++AA
Sbjct: 60 KWAA 63
>gi|38505658|ref|NP_942279.1| hypothetical protein sll5123 [Synechocystis sp. PCC 6803]
gi|38423682|dbj|BAD01893.1| sll5123 [Synechocystis sp. PCC 6803]
Length = 144
Score = 62.4 bits (150), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ KLDLN Y I+ P T F+RVT +M+ GI GD+LIV+++ E ++V+ VN
Sbjct: 38 YLEGKLDLNQYLIKHPAATFFVRVTGDSMIGAGIHAGDILIVDRSLEPRDGKVVIAVVNG 97
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQL 139
E V + + S +S + I D + G VTNVIH L
Sbjct: 98 ELLVKR-LRMEKQKIYLASENSDYPPLVITDLMDFEVWGVVTNVIHPL 144
>gi|95929179|ref|ZP_01311923.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684]
gi|95134677|gb|EAT16332.1| putative prophage repressor [Desulfuromonas acetoxidans DSM 684]
Length = 143
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI++P T F+RV +M+ GI GD+L+V+++ ++V+ +N
Sbjct: 35 YCERTLDLNALCIQKPAATYFVRVQGDSMIEAGIFPGDVLVVDRSLAAQHGDIVIAALNG 94
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQR 141
E V + T+ + ++ + + I+I + +L I G T VIH L+R
Sbjct: 95 ELTVKKL--ETSSTTRLVPMNKQHQAIEIPEGAELEIFGVATTVIHSLKR 142
>gi|77543205|gb|ABA87017.1| RumA [Vibrio cholerae]
Length = 149
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+RP T F+RV +M+ GI D+L+V+++ + ++V+ ++
Sbjct: 40 YVEQTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVIAGIHG 99
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
E V E + + + E I I + +L I G VTNV+ ++RK+
Sbjct: 100 ELTVKEL--QLRPCVMLIPRNQAYEPIHIPEGTELEIFGVVTNVVRNMRRKS 149
>gi|153800437|ref|ZP_01955023.1| protein UmuD [Vibrio cholerae MZO-3]
gi|124124063|gb|EAY42806.1| protein UmuD [Vibrio cholerae MZO-3]
Length = 149
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+RP T F+RV + M+ GI D+L+V+++ + ++V++ ++
Sbjct: 40 YVEQTLDLNELCIKRPAATFFVRVESDAMIDAGIHPDDILVVDRSVQAEHGDIVIVGIHG 99
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
E V E + + + E I I + +L I G VTNV+ ++RK+
Sbjct: 100 ELTVKEL--QLRPCVMLIPRNQVYEPIHIPEGTELEIFGVVTNVVRNMRRKS 149
>gi|117925371|ref|YP_865988.1| putative prophage repressor [Magnetococcus sp. MC-1]
gi|117609127|gb|ABK44582.1| putative prophage repressor [Magnetococcus sp. MC-1]
Length = 132
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 19 PMPFFDDMKQNNL------FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLI 72
P+PFF + + LDLN I+RP T F+RVT +M+ GI GD+L+
Sbjct: 4 PIPFFTSLVPAGFPSPADDYLEGHLDLNELLIKRPAATFFVRVTGDSMIGAGIHSGDILV 63
Query: 73 VEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKT-ENIKIADWRKLPIVGT 131
V+++ E +V+ V+ E V +G V+L ++K + ++I++ +++ + G
Sbjct: 64 VDRSLEPINGSIVIAVVSGELTVKRL--KKDGGRVWLMPENKDFQPMEISEEQEMTVWGV 121
Query: 132 VTNVIHQL 139
V + IHQ
Sbjct: 122 VRSAIHQF 129
>gi|120597913|ref|YP_962487.1| putative prophage repressor [Shewanella sp. W3-18-1]
gi|120558006|gb|ABM23933.1| putative prophage repressor [Shewanella sp. W3-18-1]
Length = 149
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+RP T F+RV +M+ GI D+L+V+++ + ++V+ ++
Sbjct: 40 YVEQTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVIAGIHG 99
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
E V E + + + E I I + +L I G VTNV+ ++RK+
Sbjct: 100 ELTVKELQLRPCVKLI--PRNQAYEPIHIPEGTELEIFGVVTNVVRNMRRKS 149
>gi|862632|gb|AAC45831.1| RumA(R391) [IncJ plasmid R391]
gi|19571780|emb|CAD27658.1| RumA protein [Providencia rettgeri]
gi|20095189|gb|AAM08055.1| RumA [Providencia rettgeri]
gi|1096690|prf||2112258A rumA gene
Length = 149
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+RP T F+RV +M+ GI D+L+V+++ + ++V+ ++
Sbjct: 40 YVEQTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVIAGIHG 99
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
E V E + + + E I I + +L I G VTNV+ ++RK+
Sbjct: 100 ELTVKELQLRPCVKLI--PRNQAYEPIHIPEGTELEIFGVVTNVVRNMRRKS 149
>gi|116189900|ref|ZP_01479645.1| hypothetical protein VchoM_02001254 [Vibrio cholerae MO10]
gi|153821431|ref|ZP_01974098.1| protein UmuD [Vibrio cholerae B33]
gi|17017486|gb|AAK64594.1| RumA [Vibrio cholerae]
gi|21885340|gb|AAL59746.1| UV repair [Vibrio cholerae]
gi|32469330|dbj|BAC79073.1| UV repair [Vibrio cholerae]
gi|126521031|gb|EAZ78254.1| protein UmuD [Vibrio cholerae B33]
Length = 149
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+RP T F+RV +M+ GI D+L+V+++ + ++V+ ++
Sbjct: 40 YVEQTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVIAGIHG 99
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
E V E + + + E I I + +L I G VTNV+ ++RK+
Sbjct: 100 ELTVKELQLRPCVKLI--PRNQAYEPIHIPEGAELEIFGVVTNVVRNMRRKS 149
>gi|54294587|ref|YP_127002.1| hypothetical protein lpl1663 [Legionella pneumophila str. Lens]
gi|54297618|ref|YP_123987.1| hypothetical protein lpp1669 [Legionella pneumophila str. Paris]
gi|53751403|emb|CAH12821.1| hypothetical protein [Legionella pneumophila str. Paris]
gi|53754419|emb|CAH15903.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 138
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ LDLN Y I+ P T F+R + +M+ GI GD+LIV++ E ++V++ +N
Sbjct: 31 YIESMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVIVALNG 90
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQL 139
E V ++ +G+ L+ + I I + + I G VT+VIH +
Sbjct: 91 ELTVKR-LSRQHGQVKLLAENPDFPPIDITEEYDMVIWGVVTHVIHTV 137
>gi|52841932|ref|YP_095731.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52629043|gb|AAU27784.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 184
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ LDLN Y I+ P T F+R + +M+ GI GD+LIV++ E ++V++ +N
Sbjct: 77 YIESMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVIVALNG 136
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQL 139
E V ++ +G+ L+ + I I + + I G VT+VIH +
Sbjct: 137 ELTVKR-LSRQHGQVKLLAENPDFPPIDITEEYDMVIWGVVTHVIHTV 183
>gi|148359239|ref|YP_001250446.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
pneumophila str. Corby]
gi|148281012|gb|ABQ55100.1| SOS (error prone) mutagenesis protein UmuD (RumA) [Legionella
pneumophila str. Corby]
Length = 174
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ LDLN Y I+ P T F+R + +M+ GI GD+LIV++ E ++V++ +N
Sbjct: 67 YIESMLDLNEYLIKHPASTFFVRASGESMINAGIYSGDILIVDRGIEATHGKIVIVALNG 126
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQL 139
E V ++ +G+ L+ + I I + + I G VT+VIH +
Sbjct: 127 ELTVKR-LSRQHGQVKLLAENPDFPPIDITEEYDMVIWGVVTHVIHTV 173
>gi|71559074|ref|YP_271801.1| SamA [Salmonella enterica]
gi|68166373|gb|AAY88134.1| SamA [Salmonella enterica]
Length = 140
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ +KLDLN YCIRRP T F+R +M G+ GD+++V+K + ++V+ E +
Sbjct: 34 YTEEKLDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAEKPMQGDIVIAETDG 93
Query: 92 EFHV 95
EF V
Sbjct: 94 EFTV 97
>gi|116006845|ref|YP_788028.1| ImpA UV protection protein [Escherichia coli]
gi|115500700|dbj|BAF33931.1| ImpA UV protection protein [Escherichia coli]
Length = 145
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 3 YQNHAAVQNDQSFSYQPMPFFDDMKQNNL------FFNKKLDLNLYCIRRPQQTCFIRVT 56
Y A D S+ P F D Q + ++LDLN YCI RP T F+R +
Sbjct: 5 YHRPADPSGDDSYV---RPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRAS 61
Query: 57 NPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTE 116
+M G+ GD+L+V++ + ++V+ E++ EF V + L S +
Sbjct: 62 GESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPA---LEPVSDSP 118
Query: 117 NIKIADWRKLPIVGTVTNVIHQ 138
++ + I G VT+VIH+
Sbjct: 119 ELRTLYPENICIFGIVTHVIHR 140
>gi|113949783|ref|ZP_01435426.1| putative prophage repressor [Shewanella baltica OS195]
gi|153000861|ref|YP_001366542.1| putative prophage repressor [Shewanella baltica OS185]
gi|113907860|gb|EAU26522.1| putative prophage repressor [Shewanella baltica OS195]
gi|151365479|gb|ABS08479.1| putative prophage repressor [Shewanella baltica OS185]
Length = 139
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+ P T F++V +M+ GI GD+L+V+++ + + VV VN
Sbjct: 33 YVEQTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQPAHGDTVVAAVNG 92
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQ 140
EF V + L ++ I I D +L I G VTNV+ +L+
Sbjct: 93 EFTVKQL--QLRPVVQLLPRNALFSPIAINDESELNIFGVVTNVVKKLK 139
>gi|126174565|ref|YP_001050714.1| putative prophage repressor [Shewanella baltica OS155]
gi|149116763|ref|ZP_01843480.1| putative prophage repressor [Shewanella baltica OS223]
gi|125997770|gb|ABN61845.1| putative prophage repressor [Shewanella baltica OS155]
gi|146863257|gb|EDK48810.1| putative prophage repressor [Shewanella baltica OS223]
Length = 139
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+ P T F++V +M+ GI GD+L+V+++ + + VV VN
Sbjct: 33 YVEQTLDLNELCIKHPAATFFVKVQGDSMIEAGIFSGDILVVDRSLQPAHGDTVVAAVNG 92
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQ 140
EF V + L ++ I I D +L I G VTNV+ +L+
Sbjct: 93 EFTVKQL--QLRPVVQLLPRNALFSPIAINDESELNIFGVVTNVVKKLK 139
>gi|9507468|ref|NP_052475.1| hypothetical protein ColIb-P9_p029 [Plasmid ColIb-P9]
gi|32470183|ref|NP_863407.1| hypothetical protein R64_p052 [Salmonella typhimurium]
gi|58000288|ref|YP_190180.1| ImpA UV protection protein [Escherichia coli]
gi|60115646|ref|YP_209437.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|75230599|ref|ZP_00717074.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Escherichia coli B7A]
gi|75259078|ref|ZP_00730446.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Escherichia coli E22]
gi|124420|sp|P18641|IMPA_SALTY Protein impA [Contains: Protein impA']
gi|75381951|sp|Q7BSM9|IMPA_SHIFL Protein impA [Contains: Protein impA']
gi|75485096|sp|Q5J3U9|IMPA_SALCH Protein impA [Contains: Protein impA']
gi|115502231|sp|Q7M1C0|IMPA_ECOLI Protein impA [Contains: Protein impA']
gi|47747|emb|CAA37607.1| unnamed protein product [Salmonella typhimurium]
gi|4138833|gb|AAD03592.1| ImpA [Shigella flexneri]
gi|4512465|dbj|BAA75114.1| impA [Plasmid ColIb-P9]
gi|20521551|dbj|BAB91615.1| impA [Salmonella typhimurium]
gi|45758204|gb|AAS76416.1| ImpA [Salmonella enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|47716802|gb|AAT37579.1| ImpA UV protection protein [Escherichia coli]
Length = 145
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 3 YQNHAAVQNDQSFSYQPMPFFDDMKQNNL------FFNKKLDLNLYCIRRPQQTCFIRVT 56
Y A D S+ P F D Q + ++LDLN YCI RP T F+R +
Sbjct: 5 YHRPADPSGDDSYV---RPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRAS 61
Query: 57 NPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTE 116
+M G+ GD+L+V++ + ++V+ E++ EF V + L S +
Sbjct: 62 GESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPA---LEPVSDSP 118
Query: 117 NIKIADWRKLPIVGTVTNVIHQ 138
+ + I G VT+VIH+
Sbjct: 119 EFRTLYPENICIFGVVTHVIHR 140
>gi|12084966|ref|NP_073259.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|17233502|ref|NP_490545.1| SamA [Salmonella typhimurium LT2]
gi|60115500|ref|YP_209292.1| SamA protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|134195|sp|P23831|SAMA_SALTY Protein samA [Contains: Protein samA']
gi|217088|dbj|BAA14225.1| UmuD [Salmonella typhimurium]
gi|12060336|dbj|BAB20542.1| SamA [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|16445323|gb|AAL23541.1| mutagenesis by UV and mutagens; related to umuDC operon
[Salmonella typhimurium LT2]
gi|45359324|gb|AAS58911.1| SamA protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
Length = 140
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ ++LDLN YCIRRP T F+R +M G+ GD+++V+K + ++V+ E +
Sbjct: 34 YTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAEKPMQGDIVIAETDG 93
Query: 92 EFHV 95
EF V
Sbjct: 94 EFTV 97
>gi|75236510|ref|ZP_00720602.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Escherichia coli F11]
gi|91206309|ref|YP_538663.1| UV protection and mutation protein [Escherichia coli UTI89]
gi|91075760|gb|ABE10640.1| UV protection and mutation protein [Escherichia coli UTI89]
Length = 145
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 3 YQNHAAVQNDQSFSYQPMPFFDDMKQNNL------FFNKKLDLNLYCIRRPQQTCFIRVT 56
Y A D S+ P F D Q + ++LDLN YCI RP T F+R +
Sbjct: 5 YHRPADPSGDDSYV---RPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRTS 61
Query: 57 NPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTE 116
+M G+ GD+L+V++ + ++V+ E++ EF V + L S +
Sbjct: 62 GESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPA---LEPVSDSP 118
Query: 117 NIKIADWRKLPIVGTVTNVIHQ 138
+ + I G VT+VIH+
Sbjct: 119 EFRTLYPENICIFGIVTHVIHR 140
>gi|89091943|ref|ZP_01164898.1| UmuD [Oceanospirillum sp. MED92]
gi|89083678|gb|EAR62895.1| UmuD [Oceanospirillum sp. MED92]
Length = 141
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ K LDLN I+RP T F+R +M+ GI GD+LIV+++ ++V+ V
Sbjct: 35 YVEKTLDLNELLIQRPAATYFVRAEGDSMIGAGIHSGDILIVDRSLTAKEGDIVIAAVEG 94
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQ 140
E V + L ++ I IA+ L + G VTNVIH L+
Sbjct: 95 ELTVKQL--QLKPVCRLLPRNNAYRPITIAEGSDLELFGVVTNVIHGLR 141
>gi|95020387|gb|ABF50720.1| UV repair protein [Vibrio cholerae]
Length = 131
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ + LDLN CI+RP T F+RV +M+ GI D+L+V+++ + ++V+ ++
Sbjct: 22 YVEQTLDLNELCIKRPAATFFVRVEGDSMIDAGIHPDDILVVDRSVQAEHGDIVIAGIHG 81
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
E V E + + + E I I + +L I VTNV+ ++RK+
Sbjct: 82 ELTVKELQLRPCVKLI--PRNQAYEPIHIPEGAELEIFDVVTNVVRNMRRKS 131
>gi|119640088|gb|ABL85463.1| ImpA [Escherichia coli]
Length = 146
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 21 PFFDDMKQNNL------FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVE 74
P F D Q + ++LDLN YCI RP T F+R + +M G+ GD+L+V+
Sbjct: 21 PLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGKSMNQAGVQNGDLLVVD 80
Query: 75 KNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTN 134
+ + ++V+ E++ EF V + L S + + + I G +T+
Sbjct: 81 RAEKPQHGDIVIAEIDGEFTVKRLLLRPRPA---LEPVSDSPEFRTLYPENICIFGVITH 137
Query: 135 VIHQ 138
VIH+
Sbjct: 138 VIHR 141
>gi|56750016|ref|YP_170717.1| DNA polymerase V [Synechococcus elongatus PCC 6301]
gi|81300358|ref|YP_400566.1| DNA polymerase V [Synechococcus elongatus PCC 7942]
gi|56684975|dbj|BAD78197.1| DNA polymerase V [Synechococcus elongatus PCC 6301]
gi|81169239|gb|ABB57579.1| DNA polymerase V [Synechococcus elongatus PCC 7942]
Length = 186
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
+ ++LDLN + I+ P T RV+ +M+ GI GD++IV+++ E ++V+ +N
Sbjct: 80 YIEQRLDLNRHLIKNPAATFMARVSGDSMIGVGIHDGDVIIVDRSLEPRDGQIVIAVLNG 139
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKT-ENIKIADWRKLPIVGTVTNVIHQL 139
E V + +FL ++ +++I D I G VTNVIH L
Sbjct: 140 ELTVKRL--RQERQRLFLQAENPNYPDLEITDASAFQIWGVVTNVIHAL 186
>gi|152987517|ref|YP_001345496.1| protein MucA [Pseudomonas aeruginosa PA7]
gi|150962675|gb|ABR84700.1| protein MucA [Pseudomonas aeruginosa PA7]
Length = 147
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 37 LDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVY 96
L L+ C+ P T F+RV +M GI GD+L+V+++ +VV VN EF
Sbjct: 43 LSLDELCVVHPAATFFLRVVGDSMTGLGIFDGDILVVDRSITPRAGMVVVAVVNGEFTCK 102
Query: 97 EFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQL 139
+ +A+ +G V + + +I++ D L + G VT IH+L
Sbjct: 103 Q-LAYEHGAPVLRAANKAYPDIRLRDGEDLEVFGVVTRCIHKL 144
>gi|87120542|ref|ZP_01076436.1| UmuD protein; UmuD' protein [Marinomonas sp. MED121]
gi|86164185|gb|EAQ65456.1| UmuD protein; UmuD' protein [Marinomonas sp. MED121]
Length = 149
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 32 FFNKKLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNN 91
F +KLDLN CI+ P+ T F+RV +M GI D+LIV+++ + V+ ++
Sbjct: 40 FIERKLDLNALCIKHPEATFFVRVQGESMSEAGIYNHDVLIVDRSLTARHGDFVIACIHG 99
Query: 92 EFHVYEFIAHTNGEFVFLSLDSKT-ENIKIADWRKLPIVGTVTNVIHQLQR 141
E V E + N V L +K I I + +L + G V +V+ +QR
Sbjct: 100 EMTVKELVLKPN---VALRPKNKAYAAIAITEESELDVFGVVISVVRNIQR 147
>gi|73853267|ref|YP_308763.1| hypothetical protein LH0099 [Escherichia coli]
gi|73476851|gb|AAZ76466.1| hypothetical protein LH0099 [Escherichia coli]
Length = 145
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 3 YQNHAAVQNDQSFSYQPMPFFDDMKQNNL------FFNKKLDLNLYCIRRPQQTCFIRVT 56
Y A D S+ P F D Q + ++LDLN YCI RP T F+R +
Sbjct: 5 YHRPADPSGDDSYV---RPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRAS 61
Query: 57 NPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHVYEFIAHTNGEFVFLSLDSKTE 116
+M G+ GD+L+V++ + ++V+ E++ EF V L S +
Sbjct: 62 GESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLRLRPRPA---LEPVSDSP 118
Query: 117 NIKIADWRKLPIVGTVTNVIHQ 138
+ + I G VT+VIH+
Sbjct: 119 EFRTLYPENICIFGVVTHVIHR 140
>gi|83586522|ref|ZP_00925155.1| COG1974: SOS-response transcriptional repressors (RecA-mediated
autopeptidases) [Escherichia coli 101-1]
Length = 140
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 36 KLDLNLYCIRRPQQTCFIRVTNPNMLAWGIDVGDMLIVEKNNELFVEELVVLEVNNEFHV 95
+LDLN YCI RP T F+R +M G+ GD+++V+K ++V+ E + EF V
Sbjct: 38 ELDLNAYCIHRPSATYFVRAIGDSMKDMGLYSGDLMVVDKAENPMQGDIVIAETDGEFTV 97
Query: 96 YEFIAHTNGEFVFLSLDSKTENIKIADWRKLPIVGTVTNVIHQLQRKN 143
L ++S + ++ +L I G + IH+ + N
Sbjct: 98 KRL--QLKPRIALLPMNSASSSLYS---EELQIFGVMIAFIHKTRSAN 140
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.324 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,461,657
Number of Sequences: 5470121
Number of extensions: 21996129
Number of successful extensions: 56604
Number of sequences better than 1.0e-05: 48
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 56535
Number of HSP's gapped (non-prelim): 48
length of query: 149
length of database: 1,894,087,724
effective HSP length: 112
effective length of query: 37
effective length of database: 1,281,434,172
effective search space: 47413064364
effective search space used: 47413064364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)