R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9279721|dbj|BAB01311.1| (AB025639) contains similarity to unknown
protein~gb|AAF15970.1~gene_id:MTE24.1 [Arabidopsis thaliana]
Length = 141
Frame 2 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 84/102 (82%), Positives = 93/102 (91%), Frame = +2
Query: 320 VSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEE 499
VSL L + MD+FAK RDWE++HSPRNLLLA+VGEVGELSEIFQWKGEV +G DWKEEE
Sbjct: 14 VSLQTLSKKMDDFAKARDWEKYHSPRNLLLAMVGEVGELSEIFQWKGEVARGCPDWKEEE 73
Query: 500 KVHLGEELSDVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYP 625
KVHLGEELSDVLLYLVRLSD CGVDLGKAALRK++LNA+KYP
Sbjct: 74 KVHLGEELSDVLLYLVRLSDACGVDLGKAALRKIELNAIKYP 115
>gi|6539656|gb|AAF15970.1| (AF110764) RS21-C6 [Mus musculus]
Length = 170
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 297 (104.5 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 56/101 (55%), Positives = 73/101 (72%), Frame = +2
Query: 323 SLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEK 502
+L+ ++++ EFA ERDWEQFH PRNLLLALVGEVGEL+E+FQWK + G W +E+
Sbjct: 30 TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKER 89
Query: 503 VHLGEELSDVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYP 625
L EELSDVL+YLV L+ C VDL +A + K+ N +YP
Sbjct: 90 AALQEELSDVLIYLVALAARCHVDLPQAVISKMDTNRQRYP 130
>gi|10437250|dbj|BAB15025.1| (AK024843) unnamed protein product [Homo sapiens]
>gi|12654993|gb|AAH01344.1|AAH01344 (BC001344) Unknown (protein for
MGC:5627) [Homo sapiens]
Length = 170
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 295 (103.8 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 59/116 (50%), Positives = 75/116 (64%), Frame = +2
Query: 323 SLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEK 502
+L+ ++++ EFA ERDWEQFH PRNLLLALVGEVGEL+E+FQWK + G W E+
Sbjct: 30 TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKTDGEPGPQGWSPRER 89
Query: 503 VHLGEELSDVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYPKKVYEDPSSSTVSPP 670
L EELSDVL+YLV L+ C VDL A L K+ +N +YP + S P
Sbjct: 90 AALQEELSDVLIYLVALAARCRVDLPLAVLSKMDINRRRYPAHLARSSSRKYTELP 145
>gi|11498778 ref|NP_070007.1| hypothetical protein [Archaeoglobus fulgidus]
>gi|7483568|pir||A69397 hypothetical protein AF1178 - Archaeoglobus
fulgidus >gi|2649424|gb|AAB90082.1| (AE001023) A. fulgidus
predicted coding region AF1178 [Archaeoglobus fulgidus]
Length = 106
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 183 (64.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 40/105 (38%), Positives = 66/105 (62%), Frame = +2
Query: 326 LDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKV 505
+++L I+ EF R W ++H+P+NL +++ EV EL EIFQW + + E K
Sbjct: 1 MEELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEF-EVLERRKG 59
Query: 506 HLGEELSDVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYPK-KVYE 640
+ EE++DVL+YL+ L D+ ++ +A RK++ N KYPK +V+E
Sbjct: 60 EVEEEIADVLIYLLFLCDVAEINPIEAVKRKMEKNERKYPKNRVHE 105
>gi|11348241|pir||C83047 conserved hypothetical protein PA4789 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951055|gb|AAG08175.1|AE004892_6 (AE004892) conserved
hypothetical protein [Pseudomonas aeruginosa]
Length = 101
Frame 2 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 153 (53.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 34/94 (36%), Positives = 50/94 (53%), Frame = +2
Query: 320 VSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEE 499
+ L +L + DW QFHSP+NL +A E+ EL EIFQW E L ++ E
Sbjct: 1 MDLHELTARLHAIRDRNDWRQFHSPKNLAMAASVEMAELVEIFQWLTEDQSRTLSAEQLE 60
Query: 500 KVHLGEELSDVLLYLVRLSDMCGVDLGKAALRKV 601
H G+E+ D++LYL+ G+DL + K+
Sbjct: 61 --HAGQEVGDIVLYLLLFCGETGLDLEQVVRAKL 92
>gi|10176622|dbj|BAB07716.1| (AP001520) BH3997~unknown conserved protein in
others [Bacillus halodurans]
Length = 101
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 33/93 (35%), Positives = 55/93 (59%), Frame = +2
Query: 347 MDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKVHLGEELS 526
++EF ER+W Q+H+P++L +++ E EL E FQW + L +E K ++ EE++
Sbjct: 11 INEFRDERNWRQYHNPKDLAISISIEAAELLEDFQWISS-EEAL----KENKENIREEIA 65
Query: 527 DVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYP 625
DVL+Y + L G+D+ + K+ N KYP
Sbjct: 66 DVLIYSLMLCSDLGLDVKEIVEEKMVKNGKKYP 98
>gi|10644760|gb|AAG21389.1|AF302051_3 (AF302051) unknown [Bacillus
licheniformis]
Length = 103
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | | 103
0 20 40 60 80 100
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 32/100 (32%), Positives = 56/100 (56%), Frame = +2
Query: 326 LDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKV 505
+ L ++EF ER+W Q+H+P++L +++ E EL E FQW + L + K
Sbjct: 4 IQSLINAINEFRDERNWRQYHNPKDLAISISIEAAELLEDFQWISS-EEAL----KANKE 58
Query: 506 HLGEELSDVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYP 625
++ EE++D+L+Y L + G+D+ + K+ N KYP
Sbjct: 59 NIREEIADILIYSFMLCNDLGLDVKEIVEEKIVKNGRKYP 98
>gi|6959524|gb|AAF33141.1|AF196567_17 (AF196567) PdtorfQ [Pseudomonas stutzeri]
Length = 53
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | 53
0 20 40
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 24/47 (51%), Positives = 34/47 (72%), Frame = +2
Query: 305 PPEAHVSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEI 445
PP + V + L + +++FA+ R+W QFHSP+NL +AL GE GEL EI
Sbjct: 7 PPSSLVDVAPLAEALEQFAEARNWAQFHSPKNLAMALAGETGELLEI 53
>gi|10174296|dbj|BAB05398.1| (AP001512) BH1679~unknown conserved protein
[Bacillus halodurans]
Length = 114
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.00065, P = 0.00065
Identities = 30/88 (34%), Positives = 51/88 (57%), Frame = +2
Query: 323 SLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELS-EIFQWKGEVPKGLLDWKEEE 499
++ Q++Q +D + + E + SP +L L EVGELS E+ + GE PK D EEE
Sbjct: 5 TMRQMQQEVDAYISQFK-EGYFSPLAMLARLSEEVGELSREVNHFYGEKPKK--D-SEEE 60
Query: 500 KVHLGEELSDVLLYLVRLSDMCGVDLGKA 586
+ + +E+ D+L L+ ++ +DL +A
Sbjct: 61 RT-MEQEMGDILFVLICFANSLEIDLEEA 88
>gi|7519375|pir||C71225 hypothetical protein PHS001 - Pyrococcus horikoshii
>gi|3256447|dbj|BAA29130.1| (AP000001) 78aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 78
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0067, P = 0.0067
Identities = 27/74 (36%), Positives = 45/74 (60%), Frame = +2
Query: 383 FHSPRNLLLALVGEVGELSE-IFQWKGEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSD 559
+ +P +L ALV EVGEL++ I ++G KG+ K+ +K L EEL DVL L+ +++
Sbjct: 4 YWTPSQMLTALVEEVGELADVILSFEGV--KGV---KDHDK--LKEELGDVLFALICIAN 56
Query: 560 MCGVDLGKAALRKVQ 604
VD+ A + ++
Sbjct: 57 YFEVDMEDALMETIK 71
>gi|1945662|emb|CAB08069.1| (Z94043) hypothetical protein [Bacillus subtilis]
Length = 117
Frame 2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.011, P = 0.011
Identities = 33/96 (34%), Positives = 51/96 (53%), Frame = +2
Query: 290 KMAGVPPEAHVSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVP 469
K AGV + L ++ M EF ++R W ++ P + L+ E GEL+ + E+
Sbjct: 5 KNAGV---MRLQLADAEKWMKEFYEKRGWTEY-GPFIRVGFLMEEAGELARAVR-AYEIG 59
Query: 470 KGLLDWKE----EEKVHLGEELSDVLLYLVRLSDMCGVDL 577
+ D KE E+K L EE+ DV+ + L+DM GV L
Sbjct: 60 RDRPDEKESSRAEQKQELIEEMGDVIGNIAILADMYGVSL 99
>gi|7475480|pir||C70033 hypothetical protein yvdC - Bacillus subtilis
>gi|2635978|emb|CAB15470.1| (Z99121) yvdC [Bacillus subtilis]
Length = 106
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.024, P = 0.024
Identities = 29/88 (32%), Positives = 47/88 (53%), Frame = +2
Query: 320 VSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKE-- 493
+ L ++ M EF ++R W ++ P + L+ E GEL+ + E+ + D KE
Sbjct: 1 MQLADAEKWMKEFYEKRGWTEY-GPFIRVGFLMEEAGELARAVR-AYEIGRDRPDEKESS 58
Query: 494 --EEKVHLGEELSDVLLYLVRLSDMCGVDL 577
E+K L EE+ DV+ + L+DM GV L
Sbjct: 59 RAEQKQELIEEMGDVIGNIAILADMYGVSL 88
>gi|1176702|sp|P42979|YPJD_BACSU HYPOTHETICAL 13.0 KD PROTEIN IN QCRC-DAPB
INTERGENIC REGION >gi|7475268|pir||D69937 hypothetical protein ypjD
- Bacillus subtilis >gi|755602|gb|AAA92873.1| (L38424) unknown
[Bacillus subtilis] >gi|1146233|gb|AAB38441.1| (L47709) putative
[Bacillus subtilis] >gi|2634668|emb|CAB14166.1| (Z99115) alternate
gene name: jojD [Bacillus subtilis]
Length = 111
Frame 2 hits (HSPs): _______________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 111
0 50 100
__________________
Annotated Domains:
PRODOM PD169836: YPJD_BACSU 1..34
PRODOM PD029233: 36..87
PRODOM PD072674: YPJD_BACSU 89..110
__________________
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.17, P = 0.16
Identities = 25/70 (35%), Positives = 39/70 (55%), Frame = +2
Query: 377 EQFHSPRNLLLALVGEVGELS-EIFQWKGEVPKGLLDWKEEEKVHLGEELSDVLLYLVRL 553
E + SP ++ L E+GEL+ E+ GE PK E++K + EE+ DVL LV L
Sbjct: 22 EGYFSPLAMMARLTEELGELAREVNHRYGEKPKKAT---EDDK-SMEEEIGDVLFVLVCL 77
Query: 554 SDMCGVDLGKA 586
++ + L +A
Sbjct: 78 ANSLDISLEEA 88
>gi|7518387|pir||B75193 hypothetical protein PAB3022 - Pyrococcus abyssi
(strain Orsay) >gi|5457502|emb|CAB48993.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 78
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.19, P = 0.17
Identities = 27/83 (32%), Positives = 48/83 (57%), Frame = +2
Query: 383 FHSPRNLLLALVGEVGELSE-IFQWKGEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSD 559
+ +P +L ALV EVGEL++ I ++G KG D+ + L EE+ DVL L+ +++
Sbjct: 4 YWTPAQMLTALVEEVGELADVILSFEGV--KGEKDYNK-----LKEEVGDVLFALICIAN 56
Query: 560 MCGVDLGKAALRKVQLNAVKYPKK 631
+++ + ALR+ KY ++
Sbjct: 57 YFQINI-EDALRET---IAKYSRR 76
>gi|7451184|pir||G70194 hypothetical protein BB0760 - Lyme disease spirochete
>gi|2688691|gb|AAC67101.1| (AE001175) B. burgdorferi predicted
coding region BB0760 [Borrelia burgdorferi]
Length = 124
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 124
0 50 100
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.19, P = 0.18
Identities = 25/67 (37%), Positives = 37/67 (55%), Frame = +2
Query: 407 LALVGEVGELSEIFQWKGEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSDMCGVDLGKA 586
L L GE GE+ E + G ++D +E + + +EL DVL YL LS+ G+ L
Sbjct: 43 LGLAGETGEVVEKIKKLGRDKNYIID--DEYLISIKKELGDVLWYLSSLSNNLGITLEDV 100
Query: 587 AL---RKVQ 604
AL +K+Q
Sbjct: 101 ALTNLKKIQ 109
>gi|9366750|emb|CAB95512.1| (AL359782) hypothetical protein, CHR1.247
[Trypanosoma brucei]
Length = 224
Frame -3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 224
0 50 100 150 200
Minus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.23, P = 0.20
Identities = 42/149 (28%), Positives = 64/149 (42%), Frame = -3
Query: 560 CRRASQDKA---THLKALHQDEPFPPLSNLEDPLEPPLSTEISQTI---LPLHPPKPKGG 399
C R + K H + H PP E+P +TE T+ L PK KGG
Sbjct: 61 CERTFKSKTWQTRHRETAHSGVA-PPRGTTENPEGSEQTTESENTLQCALCSFVPKSKGG 119
Query: 398 SLGYETA--PNPSPLQTHPLSA*ADQVKHVLL-EEPQPSFKEQKTNIVKRERERDNKNEE 228
+ PN +P Q +P+SA + H+ E K+++T + + RE D+ +
Sbjct: 120 LTNHRRVRHPNVTPRQLYPMSA----IVHLKKGREASGVRKDRRTQLPPKNRECDHTTKS 175
Query: 227 K*G*LAPHYIRTRRQENEAFF*FLGKVHSTLYLYGKR 117
+ G H+ + R + A LGK L G R
Sbjct: 176 R-GESTTHHKQEHRTRDIAVA--LGKRQGPLATEGAR 209
>gi|11498426 ref|NP_069654.1| hypothetical protein [Archaeoglobus fulgidus]
>gi|7451337|pir||D69352 hypothetical protein AF0820 - Archaeoglobus
fulgidus >gi|2649790|gb|AAB90424.1| (AE001047) A. fulgidus
predicted coding region AF0820 [Archaeoglobus fulgidus]
Length = 94
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.40, P = 0.33
Identities = 26/79 (32%), Positives = 43/79 (54%), Frame = +2
Query: 404 LLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSDMCGVDLGK 583
+L +V EVGEL+E V KG ++GEE++DV+ +LV L+++ VD+ +
Sbjct: 27 MLWVVEEVGELAEA------VRKG---------TNVGEEIADVMAWLVSLANLLDVDVEE 71
Query: 584 AALRKVQLNAVKYPKKVYE 640
L+K ++ KK E
Sbjct: 72 EILKKYPGYCIRCGKKPCE 90
>gi|870706|gb|AAA99302.1| (L43064) orf4; putative [Pseudomonas aeruginosa]
Length = 111
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 111
0 50 100
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 2.8, P = 0.94
Identities = 31/113 (27%), Positives = 50/113 (44%), Frame = +2
Query: 302 VPPEAHVSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVG--EVGELSEIFQWKGEVPKG 475
+PPE H DQ + +E S + LA +GEL + + + V +
Sbjct: 3 LPPERHPQRDQAMSAAVQILEETG-----SALRVALASQNWEAIGELDQ--RCRQAVDEA 55
Query: 476 LLDWKEEEKVHLGEELSDVLLYLVRLSDMCGVDLGKAALRKVQLNAVKYPKKVYE 640
+LD ++E L + ++L L D+C + K A +QLN K KVY+
Sbjct: 56 MLDVQDEAT--LRARMEELLALYRELIDVCQGEQRKLATDLIQLNQSKQGAKVYQ 108
>gi|7518405|pir||D75036 hypothetical protein PAB3319 - Pyrococcus abyssi
(strain Orsay) >gi|5458698|emb|CAB50185.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 95
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 3.7, P = 0.98
Identities = 16/47 (34%), Positives = 30/47 (63%), Frame = +2
Query: 458 GEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSDMCGVDLGKAALRK 598
GE+ + L ++ ++ L EE +DVL +L L+++ +DL +AA +K
Sbjct: 35 GELAEAL---RKNDREALEEEFADVLAWLASLANLLDIDLEEAAKKK 78
>gi|12060145|gb|AAG35609.2|AF201828_1 (AF201828) beta-lactamase OXA-27
[Acinetobacter baumannii]
Length = 273
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 3.8, P = 0.98
Identities = 23/68 (33%), Positives = 41/68 (60%), Frame = +2
Query: 398 NLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKVHLGE--ELSDVLLYLVRLSDMCGV 571
N L+ L + +++EIF+WKGE + W E+ + LGE +LS V +Y L+ G+
Sbjct: 85 NALIGLENQKADINEIFKWKGE-KRSFTAW--EKDMTLGEAMKLSAVPVYQ-ELARRIGL 140
Query: 572 DLGKAALRKV 601
DL + ++++
Sbjct: 141 DLMQKEVKRI 150
>gi|213591|gb|AAA49470.1| (M62415) HPLC6 [Pseudopleuronectes americanus]
Length = 83
Frame -3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.9, P = 0.98
Identities = 18/53 (33%), Positives = 24/53 (45%), Frame = -3
Query: 506 EPFPPLSNLEDPLEPPLSTEISQTILP-LHPPKPKGGSLGYETAPNPSPLQTHP 348
+P PP L +PP + ++ + P L PP PK L P P P Q P
Sbjct: 26 QPKPPQQQLPPLPQPPQTPPLTPPLQPPLPPPTPK--PLPNSLPPTPPPPQQPP 77
>gi|7451338|pir||C71127 hypothetical protein PHS025 - Pyrococcus horikoshii
>gi|3257194|dbj|BAA29877.1| (AP000003) 74aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 74
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 74
0 20 40 60
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 4.0, P = 0.98
Identities = 15/47 (31%), Positives = 30/47 (63%), Frame = +2
Query: 458 GEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSDMCGVDLGKAALRK 598
GE+ + L ++ ++ + EE +DVL +L L+++ +DL +AA +K
Sbjct: 13 GELAEAL---RKGDRESMEEEFADVLAWLASLANLVDIDLEEAAKKK 56
>gi|6015885|emb|CAB57712.1| (Y18930) hypothetical protein [Sulfolobus
solfataricus] >gi|12312141|emb|CAC23004.1| (AL512964) on
[Sulfolobus solfataricus]
Length = 174
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 174
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 4.3, P = 0.99
Identities = 26/103 (25%), Positives = 50/103 (48%), Frame = +2
Query: 326 LDQLKQIMDEFAKERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKV 505
+D+L + + +WE S + + +GE EI Q KG + + + W E V
Sbjct: 31 IDELNSFIGLALTKIEWEDMQSDLMRVQTELFILGE--EIIQDKGRINEETIKWLESRTV 88
Query: 506 HLGEELSDVLLYLVRL-SDMCG-VDLGKAALRKVQLNAVKYPKKV 634
+E V L+++ S+ + + ++ R+V+ NAV Y K++
Sbjct: 89 EYRKESGPVKLFVIPGGSEQASYLHVVRSIARRVERNAVAYSKEL 133
>gi|6735234|emb|CAB69042.1| (AJ132105) beta-lactamase [Acinetobacter baumannii]
Length = 273
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 6.5, P = 1.0
Identities = 23/68 (33%), Positives = 41/68 (60%), Frame = +2
Query: 398 NLLLALVGEVGELSEIFQWKGEVPKGLLDWKEEEKVHLGE--ELSDVLLYLVRLSDMCGV 571
N L+ L + +++EIF+WKGE + W E+ + LGE +LS V +Y L+ G+
Sbjct: 85 NALIGLENQKTDINEIFKWKGE-KRSFTAW--EKDMTLGEAMKLSAVPVYQ-ELARRIGL 140
Query: 572 DLGKAALRKV 601
DL + ++++
Sbjct: 141 DLMQKEVKRI 150
>gi|1076601|pir||S49761 structural cell wall protein - tomato (fragment)
>gi|575952|emb|CAA86659.1| (Z46674) extensin [Lycopersicon
esculentum]
Length = 80
Frame -3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.5, P = 1.0
Identities = 15/55 (27%), Positives = 25/55 (45%), Frame = -3
Query: 506 EPFPPLSNLEDPLEP-PLSTEISQTILPLHP-PKPKGGSLGYETAPNPSPLQTHP 348
+P+ P + P P P+ + P HP P P + Y++ P P+P+ P
Sbjct: 10 KPYHPTPVYKSPPPPTPVYKSPPSPVKPYHPSPTPYHPTPAYKSPPPPTPVYKSP 64
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.358 0.158 0.573
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.326 0.141 0.424
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.158 0.588
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.349 0.154 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.148 0.479
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.334 0.148 0.482
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 224 224 10. 77 3 12 22 0.11 35
32 0.12 38
+2 0 225 225 10. 77 3 12 22 0.11 35
32 0.12 38
+1 0 225 225 10. 77 3 12 22 0.11 35
32 0.12 38
-1 0 225 225 10. 77 3 12 22 0.11 35
32 0.12 38
-2 0 225 225 10. 77 3 12 22 0.11 35
32 0.12 38
-3 0 224 224 10. 77 3 12 22 0.11 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 25
No. of states in DFA: 594 (59 KB)
Total size of DFA: 244 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 238.87u 1.01s 239.88t Elapsed: 00:01:09
Total cpu time: 238.93u 1.03s 239.96t Elapsed: 00:01:09
Start: Fri Jan 18 13:06:34 2002 End: Fri Jan 18 13:07:43 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000