BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SGO_1921
(142 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157074815|gb|ABV09498.1| ComYD [Streptococcus gordonii s... 234 1e-60
gi|125717066|ref|YP_001034199.1| Competence protein ComYD, ... 146 4e-34
gi|15901870|ref|NP_346474.1| competence protein CglD [Strep... 138 8e-32
gi|149011904|ref|ZP_01833052.1| competence protein CglD [St... 138 1e-31
gi|148989746|ref|ZP_01821055.1| competence protein CglD [St... 137 1e-31
gi|2058547|gb|AAC45313.1| ComYD [Streptococcus gordonii] 137 3e-31
gi|15903902|ref|NP_359452.1| Competence protein [Streptococ... 135 6e-31
gi|116516816|ref|YP_817267.1| competence protein CglD [Stre... 135 7e-31
gi|148985988|ref|ZP_01819041.1| competence protein CglD [St... 135 8e-31
gi|149003805|ref|ZP_01828633.1| competence protein CglD [St... 135 8e-31
gi|148992111|ref|ZP_01821885.1| competence protein CglD [St... 131 1e-29
gi|146317787|ref|YP_001197499.1| Type II secretory pathway,... 120 3e-26
gi|25010237|ref|NP_734632.1| hypothetical protein gbs0162 [... 119 5e-26
gi|77410980|ref|ZP_00787336.1| competence protein CglD [Str... 119 6e-26
gi|77413395|ref|ZP_00789588.1| competence protein CglD [Str... 118 1e-25
gi|24380327|ref|NP_722282.1| putative competence protein Co... 116 3e-25
gi|55821834|ref|YP_140276.1| competence protein [Streptococ... 114 2e-24
gi|76787930|ref|YP_328897.1| competence protein, putative [... 97 4e-19
gi|116628541|ref|YP_821160.1| Type II secretory pathway/com... 92 8e-18
gi|50913483|ref|YP_059455.1| ComG operon protein 4 [Strepto... 88 1e-16
gi|21909617|ref|NP_663885.1| putative competence protein [S... 88 2e-16
gi|15674327|ref|NP_268501.1| putative competence protein [S... 87 2e-16
gi|81096704|ref|ZP_00875039.1| competence protein [Streptoc... 77 3e-13
gi|71909903|ref|YP_281453.1| comG operon protein 4 [Strepto... 72 1e-11
gi|15674102|ref|NP_268277.1| ComGD [Lactococcus lactis subs... 62 1e-08
gi|125625164|ref|YP_001033647.1| putative competence protei... 54 2e-06
>gi|157074815|gb|ABV09498.1| ComYD [Streptococcus gordonii str. Challis substr. CH1]
Length = 142
Score = 234 bits (597), Expect = 1e-60, Method: Composition-based stats.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ
Sbjct: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ 120
ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ
Sbjct: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ 120
Query: 121 TKEGLVTYQLYIGNGKFKKTTN 142
TKEGLVTYQLYIGNGKFKKTTN
Sbjct: 121 TKEGLVTYQLYIGNGKFKKTTN 142
>gi|125717066|ref|YP_001034199.1| Competence protein ComYD, putative [Streptococcus sanguinis SK36]
gi|125496983|gb|ABN43649.1| Competence protein ComYD, putative [Streptococcus sanguinis SK36]
Length = 140
Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats.
Identities = 81/137 (59%), Positives = 106/137 (77%)
Query: 5 IVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQK 64
+ +L++LPIKAFT+LESLLVL + SF+LL LS SV+A F Q+Q ++FFLEFE YQE+Q+
Sbjct: 1 MAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR 60
Query: 65 LSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEG 124
LS++ KL L+IS ++ISNGY L P+ +Q E I FD+AGGNSSL K+ FQT++
Sbjct: 61 LSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDR 120
Query: 125 LVTYQLYIGNGKFKKTT 141
V YQLY+GNGKFKKTT
Sbjct: 121 TVVYQLYMGNGKFKKTT 137
>gi|15901870|ref|NP_346474.1| competence protein CglD [Streptococcus pneumoniae TIGR4]
gi|111658734|ref|ZP_01409371.1| hypothetical protein SpneT_02000147 [Streptococcus pneumoniae
TIGR4]
gi|148998815|ref|ZP_01826252.1| competence protein CglD [Streptococcus pneumoniae SP11-BS70]
gi|14973560|gb|AAK76114.1| competence protein CglD [Streptococcus pneumoniae TIGR4]
gi|147755376|gb|EDK62426.1| competence protein CglD [Streptococcus pneumoniae SP11-BS70]
Length = 134
Score = 138 bits (348), Expect = 8e-32, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 98/127 (77%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
IKAFT+LESLLVL + S + L LS SVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYI 132
L + Q +SNG +LP+PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+
Sbjct: 62 TSLNLDGQTLSNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 133 GNGKFKK 139
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|149011904|ref|ZP_01833052.1| competence protein CglD [Streptococcus pneumoniae SP19-BS75]
gi|147763859|gb|EDK70792.1| competence protein CglD [Streptococcus pneumoniae SP19-BS75]
Length = 134
Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/127 (59%), Positives = 97/127 (76%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
IKAFT+LESLLVL + S + L LS SVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYI 132
L Q ISNG +LP+PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+
Sbjct: 62 TSLNSDGQTISNGSQKLPVPKGIQAPSDQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 133 GNGKFKK 139
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|148989746|ref|ZP_01821055.1| competence protein CglD [Streptococcus pneumoniae SP6-BS73]
gi|149007800|ref|ZP_01831396.1| competence protein CglD [Streptococcus pneumoniae SP18-BS74]
gi|147760650|gb|EDK67623.1| competence protein CglD [Streptococcus pneumoniae SP18-BS74]
gi|147924862|gb|EDK75945.1| competence protein CglD [Streptococcus pneumoniae SP6-BS73]
Length = 134
Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 97/127 (76%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
IKAFT+LESLL L + S + L LS SVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K
Sbjct: 2 IKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYI 132
L + Q ISNG +LP+PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+
Sbjct: 62 TSLNLDGQTISNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 133 GNGKFKK 139
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|2058547|gb|AAC45313.1| ComYD [Streptococcus gordonii]
Length = 89
Score = 137 bits (344), Expect = 3e-31, Method: Composition-based stats.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ
Sbjct: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARL 89
ESQKLSVSSQRKLVLEISSQEISNGYARL
Sbjct: 61 ESQKLSVSSQRKLVLEISSQEISNGYARL 89
>gi|15903902|ref|NP_359452.1| Competence protein [Streptococcus pneumoniae R6]
gi|15459551|gb|AAL00663.1| Competence protein [Streptococcus pneumoniae R6]
Length = 160
Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats.
Identities = 76/139 (54%), Positives = 103/139 (74%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
M++ ++ + IKAFT+LESLLVL + S + L LS SVQ+TF ++ +IFF+EFE Y+
Sbjct: 16 MIKMEEQIVKSMIKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYR 75
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ 120
E+QK SV+SQ+K L + Q ISNG +L +PKGIQAP I FD+AGGNSSL+KV+FQ
Sbjct: 76 ETQKRSVASQQKTSLNLDGQMISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQ 135
Query: 121 TKEGLVTYQLYIGNGKFKK 139
T +G + YQLY+GNGK K+
Sbjct: 136 TSKGAIRYQLYLGNGKIKR 154
>gi|116516816|ref|YP_817267.1| competence protein CglD [Streptococcus pneumoniae D39]
gi|149023619|ref|ZP_01836122.1| competence protein CglD [Streptococcus pneumoniae SP23-BS72]
gi|3211751|gb|AAC23740.1| competence protein [Streptococcus pneumoniae]
gi|116077392|gb|ABJ55112.1| competence protein CglD [Streptococcus pneumoniae D39]
gi|147929718|gb|EDK80709.1| competence protein CglD [Streptococcus pneumoniae SP23-BS72]
Length = 134
Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 97/127 (76%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
IKAFT+LESLLVL + S + L LS SVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYI 132
L + Q ISNG +L +PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+
Sbjct: 62 TSLNLDGQMISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 133 GNGKFKK 139
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|148985988|ref|ZP_01819041.1| competence protein CglD [Streptococcus pneumoniae SP3-BS71]
gi|147921961|gb|EDK73086.1| competence protein CglD [Streptococcus pneumoniae SP3-BS71]
Length = 134
Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats.
Identities = 74/127 (58%), Positives = 97/127 (76%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
IKAFT+LESLLVL + S + L LS SVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYI 132
L + Q +SNG +L +PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+
Sbjct: 62 TNLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 133 GNGKFKK 139
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|149003805|ref|ZP_01828633.1| competence protein CglD [Streptococcus pneumoniae SP14-BS69]
gi|147758139|gb|EDK65142.1| competence protein CglD [Streptococcus pneumoniae SP14-BS69]
Length = 134
Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 98/127 (77%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
IKAFT+LESLLVL + S + L LSSSVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYI 132
L + Q +SNG +L +PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+
Sbjct: 62 TSLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 133 GNGKFKK 139
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|148992111|ref|ZP_01821885.1| competence protein CglD [Streptococcus pneumoniae SP9-BS68]
gi|147929160|gb|EDK80171.1| competence protein CglD [Streptococcus pneumoniae SP9-BS68]
Length = 128
Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/122 (58%), Positives = 93/122 (76%)
Query: 18 VLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKLVLEI 77
+LESLLVL + S + L LS SVQ+TF ++ +IFF+EFE Y+E+QK SV+SQ+K L +
Sbjct: 1 MLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNL 60
Query: 78 SSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKF 137
Q ISNG +LP+PKGIQAP I FD+AGGNSSL+KV+FQT +G + YQLY+GNGK
Sbjct: 61 DGQMISNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKI 120
Query: 138 KK 139
K+
Sbjct: 121 KR 122
>gi|146317787|ref|YP_001197499.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
05ZYH33]
gi|146319980|ref|YP_001199691.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
98HAH33]
gi|145688593|gb|ABP89099.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
05ZYH33]
gi|145690786|gb|ABP91291.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
98HAH33]
Length = 135
Score = 120 bits (300), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/127 (48%), Positives = 92/127 (72%)
Query: 14 KAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKL 73
KAFT+ ESLL L++ SF+ ++LS +VQ F +Q +IF EFE Y++SQKL+ SS +K+
Sbjct: 7 KAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHKKV 66
Query: 74 VLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIG 133
L I QE++NGY + +P+ ++ E I F++ GGNSSL+K++F + +VTYQLYIG
Sbjct: 67 NLAIGGQEVTNGYQAVEVPRNVEVLEEKTIQFEEDGGNSSLTKIRFHLSQKIVTYQLYIG 126
Query: 134 NGKFKKT 140
+G++KKT
Sbjct: 127 SGRYKKT 133
>gi|25010237|ref|NP_734632.1| hypothetical protein gbs0162 [Streptococcus agalactiae NEM316]
gi|23094589|emb|CAD45807.1| Unknown [Streptococcus agalactiae NEM316]
Length = 137
Score = 119 bits (298), Expect = 5e-26, Method: Composition-based stats.
Identities = 64/135 (47%), Positives = 90/135 (66%)
Query: 8 LRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSV 67
LR+ +KAFTVLESL+VL + +F+ L S+S F Q++ IFF+ FEH Y+++QKLS
Sbjct: 3 LRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSA 62
Query: 68 SSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVT 127
Q+K L IS + N Y RL +PK ++ +S + FD GGNSSL+K+QF+ VT
Sbjct: 63 FGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVT 122
Query: 128 YQLYIGNGKFKKTTN 142
YQLYIG+G ++K N
Sbjct: 123 YQLYIGSGNYRKKEN 137
>gi|77410980|ref|ZP_00787336.1| competence protein CglD [Streptococcus agalactiae CJB111]
gi|77163035|gb|EAO73990.1| competence protein CglD [Streptococcus agalactiae CJB111]
Length = 137
Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats.
Identities = 64/135 (47%), Positives = 90/135 (66%)
Query: 8 LRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSV 67
LR+ +KAFTVLESL+VL + +F+ L S+S F Q++ IFF+ FEH Y+++QKLS
Sbjct: 3 LRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSA 62
Query: 68 SSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVT 127
Q+K L IS + N Y RL +PK ++ +S + FD GGNSSL+K+QF+ VT
Sbjct: 63 FGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVT 122
Query: 128 YQLYIGNGKFKKTTN 142
YQLYIG+G ++K N
Sbjct: 123 YQLYIGSGNYRKKEN 137
>gi|77413395|ref|ZP_00789588.1| competence protein CglD [Streptococcus agalactiae 515]
gi|77160565|gb|EAO71683.1| competence protein CglD [Streptococcus agalactiae 515]
Length = 142
Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 92/142 (64%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
M +++ + +KAFT+LESL+VL + +F+ L S+S F Q++ IFF+ FEH Y+
Sbjct: 1 MKNLLLKCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYR 60
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ 120
++QKLS Q+K L IS + N Y RL +PK ++ +S + FD GGNSSL+K+QF+
Sbjct: 61 DTQKLSAFGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFE 120
Query: 121 TKEGLVTYQLYIGNGKFKKTTN 142
VTYQLYIG+G ++K N
Sbjct: 121 CYRKTVTYQLYIGSGNYRKKEN 142
>gi|24380327|ref|NP_722282.1| putative competence protein ComYD [Streptococcus mutans UA159]
gi|24378343|gb|AAN59588.1|AE015021_9 putative competence protein ComYD [Streptococcus mutans UA159]
Length = 143
Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/141 (48%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
M T V+ IKAFT++ESL+ L I+SF++L+ S S+ TF +++ ++FFL FEH Y+
Sbjct: 1 MQNTQVKHGMSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYR 60
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ 120
++QKLSV ++ + L + S+ ISNG L IPK ++ + ++FD+AGGNSSL K+ FQ
Sbjct: 61 DTQKLSVYQRQDMTLILKSEYISNGVEVLKIPKDVKLERNKTLHFDQAGGNSSLEKLVFQ 120
Query: 121 TK-EGLVTYQLYIGNGKFKKT 140
T E VTYQLYIG+G++KKT
Sbjct: 121 TSDEKRVTYQLYIGSGQYKKT 141
>gi|55821834|ref|YP_140276.1| competence protein [Streptococcus thermophilus LMG 18311]
gi|55823750|ref|YP_142191.1| competence protein [Streptococcus thermophilus CNRZ1066]
gi|55737819|gb|AAV61461.1| competence protein [Streptococcus thermophilus LMG 18311]
gi|55739735|gb|AAV63376.1| competence protein [Streptococcus thermophilus CNRZ1066]
Length = 142
Score = 114 bits (284), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 95/140 (67%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
M +V+ Q PI+AFT+LESL+ L + F+ L+LS SV F+Q++ +F+L FE+ Y+
Sbjct: 1 MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYR 60
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQ 120
+SQ+L+ + + L+++ ++SNG + L IPK I + + FD GGNSSL+K++F
Sbjct: 61 DSQRLASAEGSNVELQLTKDKVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFS 120
Query: 121 TKEGLVTYQLYIGNGKFKKT 140
+ + +VTY L +G+GK+KKT
Sbjct: 121 SDKEVVTYLLNMGSGKYKKT 140
>gi|76787930|ref|YP_328897.1| competence protein, putative [Streptococcus agalactiae A909]
gi|76562987|gb|ABA45571.1| competence protein, putative [Streptococcus agalactiae A909]
Length = 112
Score = 96.7 bits (239), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/110 (45%), Positives = 70/110 (63%)
Query: 33 LALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKLVLEISSQEISNGYARLPIP 92
L S+S F Q++ IFF+ FEH Y+++QKLS Q+K L IS + N Y RL +P
Sbjct: 3 LVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENTYERLYLP 62
Query: 93 KGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKFKKTTN 142
K ++ +S + FD GGNSSL+K+QF+ VTYQLYIG+G ++K N
Sbjct: 63 KTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN 112
>gi|116628541|ref|YP_821160.1| Type II secretory pathway/competence, pseudopilin PulG
[Streptococcus thermophilus LMD-9]
gi|116101818|gb|ABJ66964.1| Type II secretory pathway/competence, pseudopilin PulG
[Streptococcus thermophilus LMD-9]
Length = 120
Score = 92.4 bits (228), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 79/118 (66%)
Query: 23 LVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKLVLEISSQEI 82
+ L + F+ L+LS SV F+Q++ +F+L FE+ Y++SQ+L+ + + L+++ ++
Sbjct: 1 MTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKDKV 60
Query: 83 SNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKFKKT 140
SNG + L IPK I + + FD GGNSSL+K++F + + +VTY L +G+GK+KKT
Sbjct: 61 SNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKT 118
>gi|50913483|ref|YP_059455.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10394]
gi|50902557|gb|AAT86272.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10394]
Length = 142
Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/131 (40%), Positives = 83/131 (63%)
Query: 11 LPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQ 70
L IKAFT+LE+LL L + SFI+L LS V ++++++ +FF FEH Y+ QKL++ Q
Sbjct: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
Query: 71 RKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQL 130
++ VL+ISS +I L +PK I ++ D+ GGN SL+K+ F + YQ
Sbjct: 66 KQRVLDISSTKIVTEGNNLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 125
Query: 131 YIGNGKFKKTT 141
Y+G+G ++KT+
Sbjct: 126 YLGSGNYQKTS 136
>gi|21909617|ref|NP_663885.1| putative competence protein [Streptococcus pyogenes MGAS315]
gi|28894994|ref|NP_801344.1| putative competence protein [Streptococcus pyogenes SSI-1]
gi|21903799|gb|AAM78688.1| putative competence protein [Streptococcus pyogenes MGAS315]
gi|28810239|dbj|BAC63177.1| putative competence protein [Streptococcus pyogenes SSI-1]
Length = 147
Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/131 (40%), Positives = 83/131 (63%)
Query: 11 LPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQ 70
L IKAFT+LE+LL L + SFI+L LS V ++++++ +FF FEH Y+ QKL++ Q
Sbjct: 11 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 70
Query: 71 RKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQL 130
++ VL+ISS +I L +PK I ++ D+ GGN SL+K+ F + YQ
Sbjct: 71 KQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 130
Query: 131 YIGNGKFKKTT 141
Y+G+G ++KT+
Sbjct: 131 YLGSGNYQKTS 141
>gi|15674327|ref|NP_268501.1| putative competence protein [Streptococcus pyogenes M1 GAS]
gi|19745283|ref|NP_606419.1| putative competence protein [Streptococcus pyogenes MGAS8232]
gi|56808826|ref|ZP_00366539.1| COG2165: Type II secretory pathway, pseudopilin PulG [Streptococcus
pyogenes M49 591]
gi|71902753|ref|YP_279556.1| ComG operon protein 4 [Streptococcus pyogenes MGAS6180]
gi|94987721|ref|YP_595822.1| ComG operon protein 4 [Streptococcus pyogenes MGAS9429]
gi|94989600|ref|YP_597700.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10270]
gi|94991589|ref|YP_599688.1| ComG operon protein 4 [Streptococcus pyogenes MGAS2096]
gi|94993492|ref|YP_601590.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10750]
gi|139472967|ref|YP_001127682.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
gi|13621411|gb|AAK33222.1| putative competence protein [Streptococcus pyogenes M1 GAS]
gi|19747381|gb|AAL96918.1| putative competence protein [Streptococcus pyogenes MGAS8232]
gi|71801848|gb|AAX71201.1| ComG operon protein 4 [Streptococcus pyogenes MGAS6180]
gi|94541229|gb|ABF31278.1| ComG operon protein 4 [Streptococcus pyogenes MGAS9429]
gi|94543108|gb|ABF33156.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10270]
gi|94545097|gb|ABF35144.1| ComG operon protein 4 [Streptococcus pyogenes MGAS2096]
gi|94547000|gb|ABF37046.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10750]
gi|134271213|emb|CAM29429.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
Length = 142
Score = 87.4 bits (215), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/131 (40%), Positives = 83/131 (63%)
Query: 11 LPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQ 70
L IKAFT+LE+LL L + SFI+L LS V ++++++ +FF FEH Y+ QKL++ Q
Sbjct: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
Query: 71 RKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQL 130
++ VL+ISS +I L +PK I ++ D+ GGN SL+K+ F + YQ
Sbjct: 66 KQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 125
Query: 131 YIGNGKFKKTT 141
Y+G+G ++KT+
Sbjct: 126 YLGSGNYQKTS 136
>gi|81096704|ref|ZP_00875039.1| competence protein [Streptococcus suis 89/1591]
gi|80977266|gb|EAP40814.1| competence protein [Streptococcus suis 89/1591]
Length = 102
Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 14 KAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKL 73
KAFT+ ESLL L++ SF+ ++LS +VQ F +Q +IF EFE Y++SQKL+ S +K+
Sbjct: 7 KAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKV 66
Query: 74 VLEISSQEISNGYARLPIPKGIQAPESTQIYFDK 107
L I QE++NGY + +P+ I+ E I ++
Sbjct: 67 NLAIGGQEVTNGYQAVQVPRNIEVLEGKTITLEE 100
>gi|71909903|ref|YP_281453.1| comG operon protein 4 [Streptococcus pyogenes MGAS5005]
gi|71852685|gb|AAZ50708.1| comG operon protein 4 [Streptococcus pyogenes MGAS5005]
Length = 109
Score = 72.0 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 61/100 (61%)
Query: 42 TFEQIQAKIFFLEFEHFYQESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPEST 101
++++++ +FF FEH Y+ QKL++ Q++ VL+ISS +I L +PK I
Sbjct: 4 SYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPY 63
Query: 102 QIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKFKKTT 141
++ D+ GGN SL+K+ F + YQ Y+G+G ++KT+
Sbjct: 64 RLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTS 103
>gi|15674102|ref|NP_268277.1| ComGD [Lactococcus lactis subsp. lactis Il1403]
gi|12725176|gb|AAK06218.1|AE006440_4 competence protein ComGD [Lactococcus lactis subsp. lactis Il1403]
Length = 143
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 1 MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQ 60
M+R ++ L KAFT+LESLLVL+I SFI S + T + ++F L+FE+FY+
Sbjct: 1 MIRIKMKNEILMTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYK 60
Query: 61 ESQKLSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSK--VQ 118
SQ+ + Q+ L +QE+ + IPK + + T + FD G NSSL K +
Sbjct: 61 RSQEDAALLQKSESLVAKNQELICEDRSITIPKEVAVKDFT-VKFDDKGENSSLQKLTIS 119
Query: 119 FQTKEGLVTYQLYIGNGKFKK 139
++ +TYQL IG+GKFKK
Sbjct: 120 LPYEKKFITYQLEIGSGKFKK 140
>gi|125625164|ref|YP_001033647.1| putative competence protein ComGD [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493972|emb|CAL98969.1| putative competence protein ComGD [Lactococcus lactis subsp.
cremoris MG1363]
Length = 147
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 13 IKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRK 72
I+AFT+LESLLVL+I SFI L S+ + T + ++F L+FE+ Y+ SQ+ +
Sbjct: 17 IRAFTLLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQENAALQSSS 76
Query: 73 LVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQ--FQTKEGLVTYQL 130
LE + ++ + IPK ++ E I FD+ G NSSL K++ ++ + YQ+
Sbjct: 77 ENLESKNGKLIYENKEIDIPKEVEMAEFL-IKFDEKGENSSLQKIKVYLPYEKKTILYQM 135
Query: 131 YIGNGKFKKTTN 142
+G+GK+KK N
Sbjct: 136 EMGSGKYKKKIN 147
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.133 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,756,394
Number of Sequences: 5470121
Number of extensions: 13543893
Number of successful extensions: 39610
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39580
Number of HSP's gapped (non-prelim): 26
length of query: 142
length of database: 1,894,087,724
effective HSP length: 106
effective length of query: 36
effective length of database: 1,314,254,898
effective search space: 47313176328
effective search space used: 47313176328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)