BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SSA_0187
(140 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|125717066|ref|YP_001034199.1| Competence protein ComYD, ... 237 2e-61
gi|157074815|gb|ABV09498.1| ComYD [Streptococcus gordonii s... 146 3e-34
gi|15903902|ref|NP_359452.1| Competence protein [Streptococ... 134 2e-30
gi|116516816|ref|YP_817267.1| competence protein CglD [Stre... 132 4e-30
gi|149011904|ref|ZP_01833052.1| competence protein CglD [St... 132 5e-30
gi|15901870|ref|NP_346474.1| competence protein CglD [Strep... 132 8e-30
gi|148989746|ref|ZP_01821055.1| competence protein CglD [St... 131 1e-29
gi|148985988|ref|ZP_01819041.1| competence protein CglD [St... 130 3e-29
gi|149003805|ref|ZP_01828633.1| competence protein CglD [St... 128 9e-29
gi|148992111|ref|ZP_01821885.1| competence protein CglD [St... 124 1e-27
gi|146317787|ref|YP_001197499.1| Type II secretory pathway,... 124 2e-27
gi|24380327|ref|NP_722282.1| putative competence protein Co... 115 1e-24
gi|55821834|ref|YP_140276.1| competence protein [Streptococ... 114 2e-24
gi|77413395|ref|ZP_00789588.1| competence protein CglD [Str... 112 6e-24
gi|77410980|ref|ZP_00787336.1| competence protein CglD [Str... 111 1e-23
gi|25010237|ref|NP_734632.1| hypothetical protein gbs0162 [... 111 1e-23
gi|116628541|ref|YP_821160.1| Type II secretory pathway/com... 93 5e-18
gi|2058547|gb|AAC45313.1| ComYD [Streptococcus gordonii] 90 5e-17
gi|21909617|ref|NP_663885.1| putative competence protein [S... 89 1e-16
gi|50913483|ref|YP_059455.1| ComG operon protein 4 [Strepto... 89 1e-16
gi|15674327|ref|NP_268501.1| putative competence protein [S... 88 1e-16
gi|76787930|ref|YP_328897.1| competence protein, putative [... 87 3e-16
gi|81096704|ref|ZP_00875039.1| competence protein [Streptoc... 84 4e-15
gi|71909903|ref|YP_281453.1| comG operon protein 4 [Strepto... 70 4e-11
gi|125625164|ref|YP_001033647.1| putative competence protei... 60 5e-08
>gi|125717066|ref|YP_001034199.1| Competence protein ComYD, putative [Streptococcus sanguinis SK36]
gi|125496983|gb|ABN43649.1| Competence protein ComYD, putative [Streptococcus sanguinis SK36]
Length = 140
Score = 237 bits (604), Expect = 2e-61, Method: Composition-based stats.
Identities = 139/140 (99%), Positives = 140/140 (100%)
Query: 1 VAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR 60
+AKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR
Sbjct: 1 MAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR 60
Query: 61 LSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDR 120
LSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDR
Sbjct: 61 LSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDR 120
Query: 121 TVVYQLYMGNGKFKKTTASS 140
TVVYQLYMGNGKFKKTTASS
Sbjct: 121 TVVYQLYMGNGKFKKTTASS 140
>gi|157074815|gb|ABV09498.1| ComYD [Streptococcus gordonii str. Challis substr. CH1]
Length = 142
Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats.
Identities = 81/137 (59%), Positives = 106/137 (77%)
Query: 1 VAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR 60
+ +L++LPIKAFT+LESLLVL + SF+LL LS SV+A F Q+Q ++FFLEFE YQE+Q+
Sbjct: 5 IVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQK 64
Query: 61 LSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDR 120
LS++ KL L+IS ++ISNGY L P+ +Q E I FD+AGGNSSL K+ FQT++
Sbjct: 65 LSVSSQRKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEG 124
Query: 121 TVVYQLYMGNGKFKKTT 137
V YQLY+GNGKFKKTT
Sbjct: 125 LVTYQLYIGNGKFKKTT 141
>gi|15903902|ref|NP_359452.1| Competence protein [Streptococcus pneumoniae R6]
gi|15459551|gb|AAL00663.1| Competence protein [Streptococcus pneumoniae R6]
Length = 160
Score = 134 bits (336), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 96/127 (75%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLLVL +VS L LGLSGSV++ F+ V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 28 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 87
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
SL + G+ ISNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 88 TSLNLDGQMISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 147
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 148 GNGKIKR 154
>gi|116516816|ref|YP_817267.1| competence protein CglD [Streptococcus pneumoniae D39]
gi|149023619|ref|ZP_01836122.1| competence protein CglD [Streptococcus pneumoniae SP23-BS72]
gi|3211751|gb|AAC23740.1| competence protein [Streptococcus pneumoniae]
gi|116077392|gb|ABJ55112.1| competence protein CglD [Streptococcus pneumoniae D39]
gi|147929718|gb|EDK80709.1| competence protein CglD [Streptococcus pneumoniae SP23-BS72]
Length = 134
Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 96/127 (75%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLLVL +VS L LGLSGSV++ F+ V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
SL + G+ ISNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 62 TSLNLDGQMISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|149011904|ref|ZP_01833052.1| competence protein CglD [Streptococcus pneumoniae SP19-BS75]
gi|147763859|gb|EDK70792.1| competence protein CglD [Streptococcus pneumoniae SP19-BS75]
Length = 134
Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats.
Identities = 75/127 (59%), Positives = 94/127 (74%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLLVL +VS L LGLSGSV++ F V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
SL G+ ISNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 62 TSLNSDGQTISNGSQKLPVPKGIQAPSDQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|15901870|ref|NP_346474.1| competence protein CglD [Streptococcus pneumoniae TIGR4]
gi|111658734|ref|ZP_01409371.1| hypothetical protein SpneT_02000147 [Streptococcus pneumoniae
TIGR4]
gi|148998815|ref|ZP_01826252.1| competence protein CglD [Streptococcus pneumoniae SP11-BS70]
gi|14973560|gb|AAK76114.1| competence protein CglD [Streptococcus pneumoniae TIGR4]
gi|147755376|gb|EDK62426.1| competence protein CglD [Streptococcus pneumoniae SP11-BS70]
Length = 134
Score = 132 bits (331), Expect = 8e-30, Method: Composition-based stats.
Identities = 74/127 (58%), Positives = 96/127 (75%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLLVL +VS L LGLSGSV++ F+ V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
SL + G+ +SNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 62 TSLNLDGQTLSNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|148989746|ref|ZP_01821055.1| competence protein CglD [Streptococcus pneumoniae SP6-BS73]
gi|149007800|ref|ZP_01831396.1| competence protein CglD [Streptococcus pneumoniae SP18-BS74]
gi|147760650|gb|EDK67623.1| competence protein CglD [Streptococcus pneumoniae SP18-BS74]
gi|147924862|gb|EDK75945.1| competence protein CglD [Streptococcus pneumoniae SP6-BS73]
Length = 134
Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/127 (58%), Positives = 94/127 (74%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLL L +VS L LGLSGSV++ F V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 2 IKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
SL + G+ ISNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 62 TSLNLDGQTISNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|148985988|ref|ZP_01819041.1| competence protein CglD [Streptococcus pneumoniae SP3-BS71]
gi|147921961|gb|EDK73086.1| competence protein CglD [Streptococcus pneumoniae SP3-BS71]
Length = 134
Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/127 (57%), Positives = 95/127 (74%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLLVL +VS L LGLSGSV++ F V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
+L + G+ +SNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 62 TNLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|149003805|ref|ZP_01828633.1| competence protein CglD [Streptococcus pneumoniae SP14-BS69]
gi|147758139|gb|EDK65142.1| competence protein CglD [Streptococcus pneumoniae SP14-BS69]
Length = 134
Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats.
Identities = 73/127 (57%), Positives = 94/127 (74%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFT+LESLLVL +VS L LGLS SV++ F V+EQ+FF+EFE LY+ETQ+ S+A +K
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYM 128
SL + G+ +SNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+
Sbjct: 62 TSLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 129 GNGKFKK 135
GNGK K+
Sbjct: 122 GNGKIKR 128
>gi|148992111|ref|ZP_01821885.1| competence protein CglD [Streptococcus pneumoniae SP9-BS68]
gi|147929160|gb|EDK80171.1| competence protein CglD [Streptococcus pneumoniae SP9-BS68]
Length = 128
Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/122 (57%), Positives = 90/122 (73%)
Query: 14 LLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKI 73
+LESLLVL +VS L LGLSGSV++ F V+EQ+FF+EFE LY+ETQ+ S+A +K SL +
Sbjct: 1 MLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNL 60
Query: 74 SGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYMGNGKF 133
G+ ISNG Q+L P+ +Q Q I FDRAGGNSSL K+ FQT + YQLY+GNGK
Sbjct: 61 DGQMISNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKI 120
Query: 134 KK 135
K+
Sbjct: 121 KR 122
>gi|146317787|ref|YP_001197499.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
05ZYH33]
gi|146319980|ref|YP_001199691.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
98HAH33]
gi|145688593|gb|ABP89099.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
05ZYH33]
gi|145690786|gb|ABP91291.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
98HAH33]
Length = 135
Score = 124 bits (310), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/127 (49%), Positives = 95/127 (74%)
Query: 10 KAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKL 69
KAFTL ESLL L VVSFL + LSG+V+ F VQE++F EFE +Y+++Q+L+ + H+K+
Sbjct: 7 KAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHKKV 66
Query: 70 SLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYMG 129
+L I G++++NGYQ ++ P+ ++ E++ IQF+ GGNSSL KI F + V YQLY+G
Sbjct: 67 NLAIGGQEVTNGYQAVEVPRNVEVLEEKTIQFEEDGGNSSLTKIRFHLSQKIVTYQLYIG 126
Query: 130 NGKFKKT 136
+G++KKT
Sbjct: 127 SGRYKKT 133
>gi|24380327|ref|NP_722282.1| putative competence protein ComYD [Streptococcus mutans UA159]
gi|24378343|gb|AAN59588.1|AE015021_9 putative competence protein ComYD [Streptococcus mutans UA159]
Length = 143
Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/131 (48%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
IKAFTL+ESL+ L + SFL+L SGS+ F +V+E+LFFL FE LY++TQ+LS+ +
Sbjct: 13 IKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQD 72
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTED-RTVVYQLY 127
++L + ISNG + L P+ ++ + + FD+AGGNSSL K++FQT D + V YQLY
Sbjct: 73 MTLILKSEYISNGVEVLKIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLY 132
Query: 128 MGNGKFKKTTA 138
+G+G++KKT +
Sbjct: 133 IGSGQYKKTES 143
>gi|55821834|ref|YP_140276.1| competence protein [Streptococcus thermophilus LMG 18311]
gi|55823750|ref|YP_142191.1| competence protein [Streptococcus thermophilus CNRZ1066]
gi|55737819|gb|AAV61461.1| competence protein [Streptococcus thermophilus LMG 18311]
gi|55739735|gb|AAV63376.1| competence protein [Streptococcus thermophilus CNRZ1066]
Length = 142
Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 90/138 (65%)
Query: 1 VAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR 60
V K + PI+AFTLLESL+ L VV FL L LSGSV F QV+ LF+L FE LY+++QR
Sbjct: 5 VVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQR 64
Query: 61 LSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDR 120
L+ A + L+++ ++SNG L P+++ + Q + FD GGNSSL KI F ++
Sbjct: 65 LASAEGSNVELQLTKDKVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKE 124
Query: 121 TVVYQLYMGNGKFKKTTA 138
V Y L MG+GK+KKT +
Sbjct: 125 VVTYLLNMGSGKYKKTIS 142
>gi|77413395|ref|ZP_00789588.1| competence protein CglD [Streptococcus agalactiae 515]
gi|77160565|gb|EAO71683.1| competence protein CglD [Streptococcus agalactiae 515]
Length = 142
Score = 112 bits (280), Expect = 6e-24, Method: Composition-based stats.
Identities = 63/133 (47%), Positives = 88/133 (66%)
Query: 3 KLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLS 62
K K +KAFTLLESL+VL VV+F+ L S S F QV+E +FF+ FE LY++TQ+LS
Sbjct: 7 KCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLS 66
Query: 63 LAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTV 122
G +K +L IS + N Y+ L P+T++ + + FD GGNSSL KI F+ +TV
Sbjct: 67 AFGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTV 126
Query: 123 VYQLYMGNGKFKK 135
YQLY+G+G ++K
Sbjct: 127 TYQLYIGSGNYRK 139
>gi|77410980|ref|ZP_00787336.1| competence protein CglD [Streptococcus agalactiae CJB111]
gi|77163035|gb|EAO73990.1| competence protein CglD [Streptococcus agalactiae CJB111]
Length = 137
Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 89/132 (67%)
Query: 4 LKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSL 63
L++ +KAFT+LESL+VL VV+F+ L S S F QV+E +FF+ FE LY++TQ+LS
Sbjct: 3 LRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSA 62
Query: 64 AGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVV 123
G +K +L IS + N Y+ L P+T++ + + FD GGNSSL KI F+ +TV
Sbjct: 63 FGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVT 122
Query: 124 YQLYMGNGKFKK 135
YQLY+G+G ++K
Sbjct: 123 YQLYIGSGNYRK 134
>gi|25010237|ref|NP_734632.1| hypothetical protein gbs0162 [Streptococcus agalactiae NEM316]
gi|23094589|emb|CAD45807.1| Unknown [Streptococcus agalactiae NEM316]
Length = 137
Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 89/132 (67%)
Query: 4 LKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSL 63
L++ +KAFT+LESL+VL VV+F+ L S S F QV+E +FF+ FE LY++TQ+LS
Sbjct: 3 LRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSA 62
Query: 64 AGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVV 123
G +K +L IS + N Y+ L P+T++ + + FD GGNSSL KI F+ +TV
Sbjct: 63 FGQKKQTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVT 122
Query: 124 YQLYMGNGKFKK 135
YQLY+G+G ++K
Sbjct: 123 YQLYIGSGNYRK 134
>gi|116628541|ref|YP_821160.1| Type II secretory pathway/competence, pseudopilin PulG
[Streptococcus thermophilus LMD-9]
gi|116101818|gb|ABJ66964.1| Type II secretory pathway/competence, pseudopilin PulG
[Streptococcus thermophilus LMD-9]
Length = 120
Score = 92.8 bits (229), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 76/120 (63%)
Query: 19 LVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKISGRQI 78
+ L VV FL L LSGSV F QV+ LF+L FE LY+++QRL+ A + L+++ ++
Sbjct: 1 MTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKDKV 60
Query: 79 SNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYMGNGKFKKTTA 138
SNG L P+++ + Q + FD GGNSSL KI F ++ V Y L MG+GK+KKT +
Sbjct: 61 SNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS 120
>gi|2058547|gb|AAC45313.1| ComYD [Streptococcus gordonii]
Length = 89
Score = 89.7 bits (221), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 68/85 (80%)
Query: 1 VAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQR 60
+ +L++LPIKAFT+LESLLVL + SF+LL LS SV+A F Q+Q ++FFLEFE YQE+Q+
Sbjct: 5 IVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQK 64
Query: 61 LSLAGHEKLSLKISGRQISNGYQEL 85
LS++ KL L+IS ++ISNGY L
Sbjct: 65 LSVSSQRKLVLEISSQEISNGYARL 89
>gi|21909617|ref|NP_663885.1| putative competence protein [Streptococcus pyogenes MGAS315]
gi|28894994|ref|NP_801344.1| putative competence protein [Streptococcus pyogenes SSI-1]
gi|21903799|gb|AAM78688.1| putative competence protein [Streptococcus pyogenes MGAS315]
gi|28810239|dbj|BAC63177.1| putative competence protein [Streptococcus pyogenes SSI-1]
Length = 147
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 82/133 (61%)
Query: 7 LPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGH 66
L IKAFTLLE+LL L V+SF++LGLS V + +V+E LFF FE LY+ Q+L++
Sbjct: 11 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 70
Query: 67 EKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQL 126
++ L IS +I L P+++ + + D+ GGN SL KIIF DR YQ
Sbjct: 71 KQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 130
Query: 127 YMGNGKFKKTTAS 139
Y+G+G ++KT+ S
Sbjct: 131 YLGSGNYQKTSQS 143
>gi|50913483|ref|YP_059455.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10394]
gi|50902557|gb|AAT86272.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10394]
Length = 142
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 82/133 (61%)
Query: 7 LPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGH 66
L IKAFTLLE+LL L V+SF++LGLS V + +V+E LFF FE LY+ Q+L++
Sbjct: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
Query: 67 EKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQL 126
++ L IS +I L P+++ + + D+ GGN SL KIIF DR YQ
Sbjct: 66 KQRVLDISSTKIVTEGNNLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 125
Query: 127 YMGNGKFKKTTAS 139
Y+G+G ++KT+ S
Sbjct: 126 YLGSGNYQKTSQS 138
>gi|15674327|ref|NP_268501.1| putative competence protein [Streptococcus pyogenes M1 GAS]
gi|19745283|ref|NP_606419.1| putative competence protein [Streptococcus pyogenes MGAS8232]
gi|56808826|ref|ZP_00366539.1| COG2165: Type II secretory pathway, pseudopilin PulG [Streptococcus
pyogenes M49 591]
gi|71902753|ref|YP_279556.1| ComG operon protein 4 [Streptococcus pyogenes MGAS6180]
gi|94987721|ref|YP_595822.1| ComG operon protein 4 [Streptococcus pyogenes MGAS9429]
gi|94989600|ref|YP_597700.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10270]
gi|94991589|ref|YP_599688.1| ComG operon protein 4 [Streptococcus pyogenes MGAS2096]
gi|94993492|ref|YP_601590.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10750]
gi|139472967|ref|YP_001127682.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
gi|13621411|gb|AAK33222.1| putative competence protein [Streptococcus pyogenes M1 GAS]
gi|19747381|gb|AAL96918.1| putative competence protein [Streptococcus pyogenes MGAS8232]
gi|71801848|gb|AAX71201.1| ComG operon protein 4 [Streptococcus pyogenes MGAS6180]
gi|94541229|gb|ABF31278.1| ComG operon protein 4 [Streptococcus pyogenes MGAS9429]
gi|94543108|gb|ABF33156.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10270]
gi|94545097|gb|ABF35144.1| ComG operon protein 4 [Streptococcus pyogenes MGAS2096]
gi|94547000|gb|ABF37046.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10750]
gi|134271213|emb|CAM29429.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
Length = 142
Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 82/133 (61%)
Query: 7 LPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGH 66
L IKAFTLLE+LL L V+SF++LGLS V + +V+E LFF FE LY+ Q+L++
Sbjct: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
Query: 67 EKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQL 126
++ L IS +I L P+++ + + D+ GGN SL KIIF DR YQ
Sbjct: 66 KQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 125
Query: 127 YMGNGKFKKTTAS 139
Y+G+G ++KT+ S
Sbjct: 126 YLGSGNYQKTSQS 138
>gi|76787930|ref|YP_328897.1| competence protein, putative [Streptococcus agalactiae A909]
gi|76562987|gb|ABA45571.1| competence protein, putative [Streptococcus agalactiae A909]
Length = 112
Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/109 (43%), Positives = 69/109 (63%)
Query: 27 LLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKISGRQISNGYQELD 86
+ L S S F QV+E +FF+ FE LY++TQ+LS G +K +L IS + N Y+ L
Sbjct: 1 MTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENTYERLY 60
Query: 87 FPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYMGNGKFKK 135
P+T++ + + FD GGNSSL KI F+ +TV YQLY+G+G ++K
Sbjct: 61 LPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRK 109
>gi|81096704|ref|ZP_00875039.1| competence protein [Streptococcus suis 89/1591]
gi|80977266|gb|EAP40814.1| competence protein [Streptococcus suis 89/1591]
Length = 102
Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 67/93 (72%)
Query: 10 KAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKL 69
KAFTL ESLL L VVSFL + LSG+V+ F VQE++F EFE +Y+++Q+L+ + H+K+
Sbjct: 7 KAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKV 66
Query: 70 SLKISGRQISNGYQELDFPQTLQEHEQQVIQFD 102
+L I G++++NGYQ + P+ ++ E + I +
Sbjct: 67 NLAIGGQEVTNGYQAVQVPRNIEVLEGKTITLE 99
>gi|71909903|ref|YP_281453.1| comG operon protein 4 [Streptococcus pyogenes MGAS5005]
gi|71852685|gb|AAZ50708.1| comG operon protein 4 [Streptococcus pyogenes MGAS5005]
Length = 109
Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 58/101 (57%)
Query: 39 FNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKISGRQISNGYQELDFPQTLQEHEQQV 98
+ +V+E LFF FE LY+ Q+L++ ++ L IS +I L P+++ +
Sbjct: 5 YQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYR 64
Query: 99 IQFDRAGGNSSLGKIIFQTEDRTVVYQLYMGNGKFKKTTAS 139
+ D+ GGN SL KIIF DR YQ Y+G+G ++KT+ S
Sbjct: 65 LVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQS 105
>gi|125625164|ref|YP_001033647.1| putative competence protein ComGD [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493972|emb|CAL98969.1| putative competence protein ComGD [Lactococcus lactis subsp.
cremoris MG1363]
Length = 147
Score = 59.7 bits (143), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 9 IKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEK 68
I+AFTLLESLLVL +VSF+ L S + + + +LF L+FE LY+ +Q +
Sbjct: 17 IRAFTLLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQENAALQSSS 76
Query: 69 LSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKI--IFQTEDRTVVYQL 126
+L+ ++ +E+D P+ + E + +I+FD G NSSL KI E +T++YQ+
Sbjct: 77 ENLESKNGKLIYENKEIDIPKEV-EMAEFLIKFDEKGENSSLQKIKVYLPYEKKTILYQM 135
Query: 127 YMGNGKFKK 135
MG+GK+KK
Sbjct: 136 EMGSGKYKK 144
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.321 0.137 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,802,599
Number of Sequences: 5470121
Number of extensions: 16143907
Number of successful extensions: 44119
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44090
Number of HSP's gapped (non-prelim): 26
length of query: 140
length of database: 1,894,087,724
effective HSP length: 104
effective length of query: 36
effective length of database: 1,325,195,140
effective search space: 47707025040
effective search space used: 47707025040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)