R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|12322207|gb|AAG51143.1|AC069273_14 (AC069273) unknown protein [Arabidopsis
thaliana]
Length = 97
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
Plus Strand HSPs:
Score = 341 (120.0 bits), Expect = 5.5e-30, P = 5.5e-30
Identities = 64/96 (66%), Positives = 81/96 (84%), Frame = +3
Query: 57 MAFNNALRSAAKLVASSESSFSNSVSRGFHSTGMKRM-GGGHGHDEPYYLHAKHMYNLDK 233
MA + ++RS +K++ASSE+S S SV+R FHSTG+K+M GGGHG + YYLHAKHMYNLD+
Sbjct: 1 MALSTSIRSVSKIIASSEASVSRSVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDR 60
Query: 234 MKHQGLKMSLAVFIAFSIGVAVPVYAVIFQQKKTAS 341
MK+Q LKMSL VF AFSIGV VP++AV+FQQ+KT S
Sbjct: 61 MKYQALKMSLGVFTAFSIGVGVPIFAVVFQQRKTQS 96
>gi|282138|pir||B42645 ribosomal protein L29 - Chlamydia trachomatis
>gi|144619|gb|AAA23170.1| (M80325) ribosomal protein CtrL29e
[Chlamydia trachomatis]
Length = 72
Frame -3 hits (HSPs): _________________________________
Annotated Domains: ___________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
__________________
Annotated Domains:
PROSITE RIBOSOMAL_L29: Ribosomal protein L29 sig 45..59
__________________
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.17, P = 0.15
Identities = 19/47 (40%), Positives = 27/47 (57%), Frame = -3
Query: 142 KPLLTELEKEDSEEATSFAADLSALLKAIGFESDALENEMVSLHAYS 2
K LL EL ++ SEE F D L A+ E+ AL+N++V H +S
Sbjct: 5 KNLLAELREKSSEELDEFIRDNKKALFALRAEA-ALQNKVVKTHQFS 50
>gi|6920076|sp|P28538|RL29_CHLTR 50S RIBOSOMAL PROTEIN L29
>gi|3328957|gb|AAC68121.1| (AE001323) L29 Ribosomal Protein
[Chlamydia trachomatis]
Length = 72
Frame -3 hits (HSPs): _________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00579A: Ribosomal protein L29 proteins 10..19
BLOCKS BL00579B: Ribosomal protein L29 proteins 37..66
DOMO DM01647: RIBOSOMALPROTEINL29 1..68
PFAM Ribosomal_L29: Ribosomal L29 protein 8..71
PRODOM PD187745: O84525(1) RL29(1) Q9Z7R5(1) 1..71
PROSITE RIBOSOMAL_L29: Ribosomal protein L29 sig 45..59
__________________
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.17, P = 0.15
Identities = 19/47 (40%), Positives = 27/47 (57%), Frame = -3
Query: 142 KPLLTELEKEDSEEATSFAADLSALLKAIGFESDALENEMVSLHAYS 2
K LL EL ++ SEE F D L A+ E+ AL+N++V H +S
Sbjct: 5 KNLLAELREKSSEELDEFIRDNKKALFALRAEA-ALQNKVVKTHQFS 50
>gi|11362655|pir||G81664 ribosomal protein L29 TC0807 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190835|gb|AAF39610.1| (AE002347)
ribosomal protein L29 [Chlamydia muridarum]
Length = 72
Frame -3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.83, P = 0.56
Identities = 18/47 (38%), Positives = 25/47 (53%), Frame = -3
Query: 142 KPLLTELEKEDSEEATSFAADLSALLKAIGFESDALENEMVSLHAYS 2
K LL EL ++ SEE F D L + E+ AL+N+ V H +S
Sbjct: 5 KNLLAELREKSSEELDEFIRDNKKALFTLRAEA-ALQNKAVKTHQFS 50
>gi|2245471|gb|AAB62522.1| (AF000523) Tat protein [Human immunodeficiency virus
type 1]
Length = 71
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 2.4, P = 0.91
Identities = 10/27 (37%), Positives = 12/27 (44%), Frame = +2
Query: 242 PGVENVPCCVHCFQHWCCSSCVCCHFP 322
PG + P C C+ CC C C P
Sbjct: 14 PGSQPKPACTTCYCKKCCLHCQVCFIP 40
>gi|7297461|gb|AAF52718.1| (AE003623) CG15868 gene product [Drosophila
melanogaster]
Length = 67
Frame 3 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 2.4, P = 0.91
Identities = 12/35 (34%), Positives = 19/35 (54%), Frame = +3
Query: 144 HSTGMKRMGGGHGHDE--PYYLHAKHMYNLDKMKH 242
HS+ K G GHGH E P+++H+ + +H
Sbjct: 23 HSSSGKHQGSGHGHREQQPHHVHSLATSTMASSRH 57
>gi|1749861|gb|AAB39117.1| (U80467) tat protein [Human immunodeficiency virus
type 1]
Length = 72
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.3, P = 0.99
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = +2
Query: 242 PGVENVPCCVHCFQHWCCSSCVCC 313
PG + C C+ CC C CC
Sbjct: 14 PGSQPKTACTSCYCKRCCFHCQCC 37
>gi|102568|pir||S08572 chymotrypsin/elastase inhibitor - common roundworm
Length = 63
Frame -1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 63
0 20 40 60
Minus Strand HSPs:
Score = 59 (20.8 bits), Expect = 9.1, P = 1.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Frame = -1
Query: 252 STPGASSC--PSCTCALHEDSRAHHDHVHLPSSSC 154
+TP A C PSC C+ R HD +P S C
Sbjct: 25 NTPCALMCRPPSCECSPGRGMRRTHDGKCVPVSEC 59
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.143 0.459
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.342 0.150 0.555
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.353 0.154 0.575
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.147 0.509
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.349 0.151 0.514
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.350 0.150 0.506
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 152 152 10. 74 3 12 22 0.094 34
30 0.12 36
+2 0 152 151 10. 74 3 12 22 0.093 34
30 0.12 36
+1 0 153 152 10. 74 3 12 22 0.094 34
30 0.12 36
-1 0 153 152 10. 74 3 12 22 0.094 34
30 0.12 36
-2 0 152 152 10. 74 3 12 22 0.094 34
30 0.12 36
-3 0 152 152 10. 74 3 12 22 0.094 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 8
No. of states in DFA: 593 (58 KB)
Total size of DFA: 192 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 154.30u 1.11s 155.41t Elapsed: 00:00:36
Total cpu time: 154.33u 1.13s 155.46t Elapsed: 00:00:36
Start: Wed Feb 6 11:47:13 2002 End: Wed Feb 6 11:47:49 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000