BLAST Search Results BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= HCMV184 (240 letters) Database: nr 1,508,275 sequences; 485,782,529 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value gi|9625855|ref|NP_040104.1| US19 [Human herpesvirus 5] >gnl|BL_O... 488 e-137 gi|20026750|ref|NP_612792.1| US19 [Chimpanzee cytomegalovirus] >... 197 9e-50 gi|31378071|gb|AAP50721.1| rh200 [Rhesus cytomegalovirus strain ... 73 3e-12 gi|31378072|gb|AAP50722.1| rh201 [Rhesus cytomegalovirus strain ... 60 3e-08 gi|20026751|ref|NP_612793.1| US20 [Chimpanzee cytomegalovirus] >... 52 6e-06 gi|549172|sp|Q03307|US20_HCMVT TRANSMEMBRANE PROTEIN HWLF3 >gnl|... 49 9e-05 gi|28373229|ref|NP_783805.1| US20 [Human herpesvirus 5] >gnl|BL_... 49 9e-05 gi|7429127|pir||QQBEG4 HWLF3 protein - human cytomegalovirus (st... 49 9e-05 gi|420435|pir||A45678 probable transmembrane protein - human cyt... 49 9e-05 gi|549171|sp|P09724|US20_HCMVA TRANSMEMBRANE PROTEIN HWLF3 49 9e-05>gi|9625855|ref|NP_040104.1| US19 [Human herpesvirus 5] gi|137151|sp|P09725|US19_HCMVA TRANSMEMBRANE PROTEIN HWLF4 gi|73702|pir||QQBEG3 HWLF4 protein - human cytomegalovirus (strain AD169) gi|291532|gb|AAA45990.1| polyhydrophobic transmembrane protein gi|1780950|emb|CAA35286.1| HCMVUS19 [Human herpesvirus 5] gi|4456192|emb|CAB37111.1| unnamed protein product [Human herpesvirus 5] gi|27808837|tpg|DAA00207.1| TPA: US19 [Human herpesvirus 5] Length = 240 Score = 488 bits (1255), Expect = e-137 Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MLHVVPLEWTVEEVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERG 60 MLHVVPLEWTVEEVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERG Sbjct: 1 MLHVVPLEWTVEEVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERG 60 Query: 61 RDDDPPPLSHLSLVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSP 120 RDDDPPPLSHLSLVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSP Sbjct: 61 RDDDPPPLSHLSLVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSP 120 Query: 121 QAFVGAALLALAVDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGLWLLRAAAPFF 180 QAFVGAALLALAVDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGLWLLRAAAPFF Sbjct: 121 QAFVGAALLALAVDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGLWLLRAAAPFF 180 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLLRLWLWSP 240 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLLRLWLWSP Sbjct: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLLRLWLWSP 240>gi|20026750|ref|NP_612792.1| US19 [Chimpanzee cytomegalovirus] gi|19881178|gb|AAM00798.1|AF480884_150 US19 [chimpanzee cytomegalovirus] Length = 272 Score = 197 bits (502), Expect = 9e-50 Identities = 119/236 (50%), Positives = 151/236 (63%), Gaps = 10/236 (4%) Query: 1 MLHVVPLEWTVEEVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERG 60 MLH +PLEWT+EE+ PYLER AVWLR +V+V FQLT TV LS L W L+P + ELCER Sbjct: 31 MLHNLPLEWTLEELAPYLERFAVWLRVAVIVNFQLTVTVLLSALLWSLVPQ-LTELCERW 89 Query: 61 RDDDPPPLSHLSLVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSP 120 D L LVVPV CLF L G + KL L+L YCLP+ LAF+ LMCQP Sbjct: 90 ---DTALWQLLGLVVPVACLFAL-HGVQLAAYKDKLILMLGYCLPNTLAFMGPLMCQPL- 144 Query: 121 QAFVGAALLALAVDLSCLGASLLGCDPGA---SLRRLWLPSVLSLLCATALGLWLLRAAA 177 +A + ALL + L CL +++G +LRRL +P LSLLCATAL +WL+ Sbjct: 145 RALLYPALLTWVLQLCCLATAIMGLGLSRHWNTLRRLLVPC-LSLLCATALLMWLVTMPE 203 Query: 178 PFFLGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 L +H + +++ +IHDLSL +SSFPESF ++RLYVENVALF+ +Y LL Sbjct: 204 QVSLLMHLGAVACLSVAVIHDLSLTIFRSSFPESFPTAIRLYVENVALFMSIYSLL 259>gi|31378071|gb|AAP50721.1| rh200 [Rhesus cytomegalovirus strain 68-1] Length = 261 Score = 73.2 bits (178), Expect = 3e-12 Identities = 64/216 (29%), Positives = 106/216 (48%), Gaps = 19/216 (8%) Query: 20 RLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLSLVVPVGC 79 R+ W++ + + QL +TV +S++ W + P E C + P S LSL VP+ Sbjct: 21 RIMFWMQVCMAIVLQLASTVIVSLIIWIVSPSSFREFC-----NIIPRYSILSLFVPMLS 75 Query: 80 LFLL-LRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALAV----- 133 LF+L + G RC +L ++ Y P+A A + + C+ S QA A+LL L + Sbjct: 76 LFILHVWGQC--RCMHQLVFIVIYMFPNATALIMMATCR-SFQAIFMASLLPLIIMMFNL 132 Query: 134 DLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGLWLLRAAAPFFLGLHATTLLTVTL 193 L C +G + L R + P +L L L L A+ ++G + LLT + Sbjct: 133 GLICFTRLRMGV---SRLHRWFFPVMLMNSALMVLALIALPASDTLWVGGYIALLLTFVI 189 Query: 194 ML-IHDLSLITCQSSFPE-SFQPSLRLYVENVALFI 227 L IHD+++I Q F + + +R+YVE + ++I Sbjct: 190 GLSIHDMTIIGKQELFEDATLVLIIRIYVETLIMYI 225>gi|31378072|gb|AAP50722.1| rh201 [Rhesus cytomegalovirus strain 68-1] Length = 253 Score = 60.1 bits (144), Expect = 3e-08 Identities = 59/238 (24%), Positives = 106/238 (43%), Gaps = 19/238 (7%) Query: 6 PLEWTVEEVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDP 65 PL T EE V + + VWLR + F LT T A++ L WL P LC Sbjct: 20 PLMVTPEEAVVWFKNFVVWLRVYGVYTFALTCTFAIASLI-WLGYPQNQNLCVNNHS--- 75 Query: 66 PPLSHLSLVVPVGCLFL-LLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFV 124 + L+L+VP+ C+ L G R P L +L Y + + + +C V Sbjct: 76 ---TVLTLLVPLTCMVTSYLLGA---RHPSNLTVLFFYICVNLVPTILFNICSEG-YVIV 128 Query: 125 GAALLALAVDLSCLGASLL-GCDPGASLRRLWLPSVLSLLCATALGLWLLRAA---APFF 180 A ++++A ++ G + + G + G R W+ + ++ A L ++A Sbjct: 129 TAYIMSVATFIAFTGLTFIAGLNYG---RWKWIIGMYIIVLALFLTSTAFQSAPWHTKLT 185 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLLRLWLW 238 + A ++ +L +D ++ QSSF + +RLYV+ +A+F+ + ++ + W Sbjct: 186 NSISAFSISFFAFILAYDTYVVIYQSSFMYCIRGGIRLYVDTIAIFLVIIFMMSMPKW 243>gi|20026751|ref|NP_612793.1| US20 [Chimpanzee cytomegalovirus] gi|19881179|gb|AAM00799.1|AF480884_151 US20 [chimpanzee cytomegalovirus] Length = 254 Score = 52.4 bits (124), Expect = 6e-06 Identities = 57/233 (24%), Positives = 101/233 (42%), Gaps = 33/233 (14%) Query: 13 EVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLS 72 E + + +R VWLR ++ FQL T L + +WL P C L+ Sbjct: 15 EALEWFKRFTVWLRVYAVLVFQLAFTFGLGSV-FWLGFPQNRNFCVENYS------FFLT 67 Query: 73 LVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALA 132 ++VP+ C+F+ + P + ++ Y L ++L MC S +A VGA ++ +A Sbjct: 68 VLVPIVCMFVAY--TLGNEHPSNVTVMFIYLLANSLTAAIFQMCSES-RALVGAYVMTVA 124 Query: 133 VDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGL-----WLLRA-------AAPFF 180 + ++ G + LG R + L +L AL L W+ + + FF Sbjct: 125 LFITFTGLAFLGGRDPYRWRCISCVYALLVLSFLALALSGHENWMQKLIMTLSAFSISFF 184 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 LG+ A L+V + CQ + ++ LY++ +ALF+ + +L Sbjct: 185 LGILAYDTLSV---------IFYCQPH--RCIRYAICLYLDVMALFLMLILML 226>gi|549172|sp|Q03307|US20_HCMVT TRANSMEMBRANE PROTEIN HWLF3 gi|291531|gb|AAA45989.1| polyhydrophobic transmembrane protein Length = 342 Score = 48.5 bits (114), Expect = 9e-05 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 33/233 (14%) Query: 13 EVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLS 72 E + + ++ VWLR + FQL + L + +WL P C L+ Sbjct: 103 EALEWFKKFTVWLRVYAIFIFQLAFSFGLGSV-FWLGFPQNRNFCVENYS------FFLT 155 Query: 73 LVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALA 132 ++VP+ C+F+ + P +L Y L ++L MC S + VG+ ++ LA Sbjct: 156 VLVPIVCMFITY--TLGNEHPSNATVLFIYLLANSLTAAIFQMCSES-RVLVGSYVMTLA 212 Query: 133 VDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGL-----WLLRA-------AAPFF 180 + +S G + LG + + V+ LL L L WL + + FF Sbjct: 213 LFISFTGLAFLGGRDRRRWKCISCVYVVMLLSFLTLALLSDADWLQKIVVTLCAFSISFF 272 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 LG+ A L V + C + + + ++ LY++++A+F+ + +L Sbjct: 273 LGILAYDSLMV---------IFFCPPN--QCIRHAVCLYLDSMAIFLTLLLML 314>gi|28373229|ref|NP_783805.1| US20 [Human herpesvirus 5] gi|4456193|emb|CAB37112.1| unnamed protein product [Human herpesvirus 5] gi|27808839|tpg|DAA00209.1| TPA: US20 [Human herpesvirus 5] Length = 254 Score = 48.5 bits (114), Expect = 9e-05 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 33/233 (14%) Query: 13 EVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLS 72 E + + ++ VWLR + FQL + L + +WL P C L+ Sbjct: 15 EALEWFKKFTVWLRVYAIFIFQLAFSFGLGSV-FWLGFPQNRNFCVENYS------FFLT 67 Query: 73 LVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALA 132 ++VP+ C+F+ + P +L Y L ++L MC S + VG+ ++ LA Sbjct: 68 VLVPIVCMFITY--TLGNEHPSNATVLFIYLLANSLTAAIFQMCSES-RVLVGSYVMTLA 124 Query: 133 VDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGL-----WLLRA-------AAPFF 180 + +S G + LG + + V+ LL L L WL + + FF Sbjct: 125 LFISFTGLAFLGGRDRRRWKCISCVYVVMLLSFLTLALLSDADWLQKIVVTLCAFSISFF 184 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 LG+ A L V + C + + + ++ LY++++A+F+ + +L Sbjct: 185 LGILAYDSLMV---------IFFCPPN--QCIRHAVCLYLDSMAIFLTLLLML 226>gi|7429127|pir||QQBEG4 HWLF3 protein - human cytomegalovirus (strain AD169) gi|1780951|emb|CAA35287.1| HCMVUS20 [Human herpesvirus 5] Length = 357 Score = 48.5 bits (114), Expect = 9e-05 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 33/233 (14%) Query: 13 EVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLS 72 E + + ++ VWLR + FQL + L + +WL P C L+ Sbjct: 118 EALEWFKKFTVWLRVYAIFIFQLAFSFGLGSV-FWLGFPQNRNFCVENYS------FFLT 170 Query: 73 LVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALA 132 ++VP+ C+F+ + P +L Y L ++L MC S + VG+ ++ LA Sbjct: 171 VLVPIVCMFITY--TLGNEHPSNATVLFIYLLANSLTAAIFQMCSES-RVLVGSYVMTLA 227 Query: 133 VDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGL-----WLLRA-------AAPFF 180 + +S G + LG + + V+ LL L L WL + + FF Sbjct: 228 LFISFTGLAFLGGRDRRRWKCISCVYVVMLLSFLTLALLSDADWLQKIVVTLCAFSISFF 287 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 LG+ A L V + C + + + ++ LY++++A+F+ + +L Sbjct: 288 LGILAYDSLMV---------IFFCPPN--QCIRHAVCLYLDSMAIFLTLLLML 329>gi|420435|pir||A45678 probable transmembrane protein - human cytomegalovirus Length = 342 Score = 48.5 bits (114), Expect = 9e-05 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 33/233 (14%) Query: 13 EVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLS 72 E + + ++ VWLR + FQL + L + +WL P C L+ Sbjct: 103 EALEWFKKFTVWLRVYAIFIFQLAFSFGLGSV-FWLGFPQNRNFCVENYS------FFLT 155 Query: 73 LVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALA 132 ++VP+ C+F+ + P +L Y L ++L MC S + VG+ ++ LA Sbjct: 156 VLVPIVCMFITY--TLGNEHPSNATVLFIYLLANSLTAAIFQMCSES-RVLVGSYVMTLA 212 Query: 133 VDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGL-----WLLRA-------AAPFF 180 + +S G + LG + + V+ LL L L WL + + FF Sbjct: 213 LFISFTGLAFLGGRDRRRWKCISCVYVVMLLSFLTLALLSDADWLQKIVVTLCAFSISFF 272 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 LG+ A L V + C + + + ++ LY++++A+F+ + +L Sbjct: 273 LGILAYDSLMV---------IFFCPPN--QCIRHAVCLYLDSMAIFLTLLLML 314>gi|549171|sp|P09724|US20_HCMVA TRANSMEMBRANE PROTEIN HWLF3 Length = 342 Score = 48.5 bits (114), Expect = 9e-05 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 33/233 (14%) Query: 13 EVVPYLERLAVWLRASVLVAFQLTATVALSVLSWWLMPPPVAELCERGRDDDPPPLSHLS 72 E + + ++ VWLR + FQL + L + +WL P C L+ Sbjct: 103 EALEWFKKFTVWLRVYAIFIFQLAFSFGLGSV-FWLGFPQNRNFCVENYS------FFLT 155 Query: 73 LVVPVGCLFLLLRGPSIDRCPRKLPLLLAYCLPHALAFLTLLMCQPSPQAFVGAALLALA 132 ++VP+ C+F+ + P +L Y L ++L MC S + VG+ ++ LA Sbjct: 156 VLVPIVCMFITY--TLGNEHPSNATVLFIYLLANSLTAAIFQMCSES-RVLVGSYVMTLA 212 Query: 133 VDLSCLGASLLGCDPGASLRRLWLPSVLSLLCATALGL-----WLLRA-------AAPFF 180 + +S G + LG + + V+ LL L L WL + + FF Sbjct: 213 LFISFTGLAFLGGRDRRRWKCISCVYVVMLLSFLTLALLSDADWLQKIVVTLCAFSISFF 272 Query: 181 LGLHATTLLTVTLMLIHDLSLITCQSSFPESFQPSLRLYVENVALFIGMYHLL 233 LG+ A L V + C + + + ++ LY++++A+F+ + +L Sbjct: 273 LGILAYDSLMV---------IFFCPPN--QCIRHAVCLYLDSMAIFLTLLLML 314Database: nr Posted date: Aug 27, 2003 10:37 AM Number of letters in database: 485,782,529 Number of sequences in database: 1,508,275 Lambda K H 0.329 0.142 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 244,795,004 Number of Sequences: 1508275 Number of extensions: 9883639 Number of successful extensions: 39470 Number of sequences better than 1.0e-03: 10 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 39461 Number of HSP's gapped (non-prelim): 10 length of query: 240 length of database: 485,782,529 effective HSP length: 120 effective length of query: 120 effective length of database: 304,789,529 effective search space: 36574743480 effective search space used: 36574743480 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 106 (45.4 bits)