BLASTP 2.2.17 [Aug-26-2007]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, 
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SMu1411 
         (121 letters)

Database: nr 
           5,470,121 sequences; 1,894,087,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24379938|ref|NP_721893.1|  hypothetical protein SMU.1552c...   215   7e-55
gi|125717238|ref|YP_001034371.1|  hypothetical protein SSA_0...    74   3e-12
gi|157074811|gb|ABV09494.1|  conserved hypothetical protein ...    71   2e-11

>gi|24379938|ref|NP_721893.1| hypothetical protein SMU.1552c [Streptococcus mutans UA159]
 gi|24377919|gb|AAN59199.1|AE014986_10 hypothetical protein SMU_1552c [Streptococcus mutans UA159]
          Length = 121

 Score =  215 bits (547), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MTYEEIKLSFLKGGIRSYKVFQGHKLYSHTVTSENNQRLISKRVYLTKKRHYVYYERTDV 60
           MTYEEIKLSFLKGGIRSYKVFQGHKLYSHTVTSENNQRLISKRVYLTKKRHYVYYERTDV
Sbjct: 1   MTYEEIKLSFLKGGIRSYKVFQGHKLYSHTVTSENNQRLISKRVYLTKKRHYVYYERTDV 60

Query: 61  NWNYWDKGKEDSSFDPNQVEENNVFEIADDLKTFAKYLGKDIVEKLADKVQHGEIVEYLD 120
           NWNYWDKGKEDSSFDPNQVEENNVFEIADDLKTFAKYLGKDIVEKLADKVQHGEIVEYLD
Sbjct: 61  NWNYWDKGKEDSSFDPNQVEENNVFEIADDLKTFAKYLGKDIVEKLADKVQHGEIVEYLD 120

Query: 121 I 121
           I
Sbjct: 121 I 121



>gi|125717238|ref|YP_001034371.1| hypothetical protein SSA_0368 [Streptococcus sanguinis SK36]
 gi|125497155|gb|ABN43821.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 122

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 1   MTYEEIKLSFLKGGIRSYKVFQGHKLYSHTVTSENNQRLISKRVYLTKKRHYVYYERTDV 60
           M Y+ ++L     GI   K+FQG K++S +  S++ + ++++++YLT K++ VYY+RTDV
Sbjct: 1   MHYKRVELKVTNQGIHERKIFQGVKIFSRSKLSKDQKSILTQKLYLTPKQNIVYYQRTDV 60

Query: 61  NWNY-WDKGKEDSSFDPNQVEENNVFEIADDLKTFAKYLGKDIVEKLADKVQHGEIVEYL 119
           N++  W   K+       Q++   VF++  D    + +L  D++EKL +K   G+  E L
Sbjct: 61  NYDQNWHHNKDYYELAYGQIDRETVFKVCQDFDELSPFLENDLLEKLKEKRSAGKFFEKL 120

Query: 120 DI 121
           DI
Sbjct: 121 DI 122



>gi|157074811|gb|ABV09494.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 122

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 1   MTYEEIKLSFLKGGIRSYKVFQGHKLYSHTVTSENNQRLISKRVYLTKKRHYVYYERTDV 60
           M Y+ I+L     GI   K+FQG K++S +  S++ + ++++++YLT K++ VYY+RTDV
Sbjct: 1   MHYKRIELKVTNQGIHERKIFQGVKIFSRSKLSKDQKSILTQKLYLTPKQNIVYYQRTDV 60

Query: 61  NWNY-WDKGKEDSSFDPNQVEENNVFEIADDLKTFAKYLGKDIVEKLADKVQHGEIVEYL 119
           N++  W   K+       Q++   VF++  D      +L  +++EKL +K   G+  E L
Sbjct: 61  NYDQNWHLNKDYYELAYGQLDRETVFKVCQDFDELNPFLENELLEKLKEKQSAGKFFEKL 120

Query: 120 DI 121
           DI
Sbjct: 121 DI 122



  Database: nr
    Posted date:  Sep 17, 2007 11:41 AM
  Number of letters in database: 999,999,834
  Number of sequences in database:  2,976,859
  
  Database: /nucleus1/users/jsaw/ncbi/db/nr.01
    Posted date:  Sep 17, 2007 11:48 AM
  Number of letters in database: 894,087,890
  Number of sequences in database:  2,493,262
  
Lambda     K      H
   0.316    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,902,300
Number of Sequences: 5470121
Number of extensions: 18230442
Number of successful extensions: 49626
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49621
Number of HSP's gapped (non-prelim): 3
length of query: 121
length of database: 1,894,087,724
effective HSP length: 88
effective length of query: 33
effective length of database: 1,412,717,076
effective search space: 46619663508
effective search space used: 46619663508
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)