R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|4850385|gb|AAD31055.1|AC007357_4 (AC007357) EST gb|T22808 comes from this
gene. [Arabidopsis thaliana]
Length = 549
Frame -1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 549
0 150 300 450
Minus Strand HSPs:
Score = 116 (40.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/39 (61%), Positives = 31/39 (79%), Frame = -1
Query: 256 TGDMWMRPSDDRRQFQGGSRERGWFSSGSRNRSTS-RERW 140
TGD W RP DDRR FQG S+ERG+F++ + +RS+S RE W
Sbjct: 511 TGDNWPRPVDDRRNFQG-SKERGFFNNRNFDRSSSAREGW 549
>gi|6739522|gb|AAF27287.1|AF136007_1 (AF136007) eukaryotic initiation factor 4B
[Arabidopsis thaliana]
Length = 549
Frame -1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 549
0 150 300 450
Minus Strand HSPs:
Score = 116 (40.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/39 (61%), Positives = 31/39 (79%), Frame = -1
Query: 256 TGDMWMRPSDDRRQFQGGSRERGWFSSGSRNRSTS-RERW 140
TGD W RP DDRR FQG S+ERG+F++ + +RS+S RE W
Sbjct: 511 TGDNWPRPVDDRRNFQG-SKERGFFNNRNFDRSSSAREGW 549
>gi|6739539|gb|AAF27294.1| (AF145232) eukaryotic initiation factor 4B
[Arabidopsis thaliana]
Length = 93
Frame -1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.00040, P = 0.00040
Identities = 21/37 (56%), Positives = 29/37 (78%), Frame = -1
Query: 250 DMWMRPSDD-RRQFQGGSRERGWFSSGSRNRSTSRERW 140
D W+RP+++ RR FQG ++ERG+FS NRS+SRE W
Sbjct: 61 DAWVRPANEQRRNFQG-TKERGFFS----NRSSSREGW 93
>gi|6224611|gb|AAF05869.1|AF021805_1 (AF021805) eIF4B [Arabidopsis thaliana]
Length = 531
Frame -1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 531
0 150 300 450
Minus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.00067, P = 0.00067
Identities = 23/37 (62%), Positives = 29/37 (78%), Frame = -1
Query: 250 DMWMRPSDD-RRQFQGGSRERGWFSSGSRNRSTSRERW 140
D W+RP+D+ RR FQG S+ERG+FS NRS+SRE W
Sbjct: 499 DAWVRPADEQRRNFQG-SKERGFFS----NRSSSREGW 531
>gi|6739518|gb|AAF27285.1| (AF136005) eukaryotic initiation factor 4B
[Arabidopsis thaliana]
Length = 325
Frame -1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 325
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0023, P = 0.0023
Identities = 21/37 (56%), Positives = 29/37 (78%), Frame = -1
Query: 250 DMWMRPSDD-RRQFQGGSRERGWFSSGSRNRSTSRERW 140
D W+RP+++ RR FQG ++ERG+FS NRS+SRE W
Sbjct: 293 DAWVRPANEQRRNFQG-TKERGFFS----NRSSSREGW 325
>gi|6739520|gb|AAF27286.1|AF136006_1 (AF136006) eukaryotic initiation factor 4B
[Triticum aestivum]
Length = 135
Frame -1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.20, P = 0.19
Identities = 16/37 (43%), Positives = 25/37 (67%), Frame = -1
Query: 250 DMWMRPSDDRRQFQGGSRERGWFSSG-SRNRSTSRERW 140
+ + +P ++R F G SRERG F G S +RS++R+ W
Sbjct: 99 ETYPKPVEERWGFHG-SRERGSFGGGGSSDRSSTRQGW 135
>gi|6739515|gb|AAF27284.1| (AF136004) eukaryotic initiation factor 4B [Triticum
aestivum]
Length = 462
Frame -1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 462
0 150 300 450
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 2.0, P = 0.86
Identities = 16/37 (43%), Positives = 25/37 (67%), Frame = -1
Query: 250 DMWMRPSDDRRQFQGGSRERGWFSSG-SRNRSTSRERW 140
+ + +P ++R F G SRERG F G S +RS++R+ W
Sbjct: 426 ETYPKPVEERWGFHG-SRERGSFGGGGSSDRSSTRQGW 462
>gi|2127792|pir||B64432 capsular polysaccharide biosynthsis protein M homolog -
Methanococcus jannaschii >gi|1591712|gb|AAB99063.1| (U67549)
capsular polysaccharide biosynthsis protein M [Methanococcus
jannaschii]
Length = 406
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 3.5, P = 0.97
Identities = 22/63 (34%), Positives = 37/63 (58%), Frame = +3
Query: 45 KRL-EKTSN-KIVVLGSGHQKLKITLNPHKTAVHHLSLDVDLFLLPEENHPLSLLPP*NC 218
KR+ EK N K+++LG G K K+ + ++ L+L +++LL + +P L NC
Sbjct: 225 KRVTEKYPNAKLIILGDGELKNKL-----QELINKLNLQNNVYLLGMQKNPFKFLKHSNC 279
Query: 219 LL-SSL 233
+ SSL
Sbjct: 280 FVFSSL 285
>gi|7450263|pir||H69530 conserved hypothetical protein AF2248 - Archaeoglobus
fulgidus >gi|2648278|gb|AAB89009.1| (AE000949) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 77
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 7.0, P = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Frame = +3
Query: 69 KIVVLGSGHQKLKITLNPHKTAVHHLSLDVDLFLLPEENHPLSL 200
KI V+G G + K T + K V LDV+L + + N + L
Sbjct: 2 KIKVVGPGCARCKATFDVVKKVVEKEGLDVELEYVTDMNEAIEL 45
>gi|1176643|sp|Q09202|YP23_CAEEL HYPOTHETICAL 25.9 KD PROTEIN AH6.3 IN
CHROMOSOME II >gi|7494683|pir||T18613 hypothetical protein AH6.3 -
Caenorhabditis elegans >gi|3873631|emb|CAA88077.1| (Z48009) AH6.3
[Caenorhabditis elegans]
Length = 230
Frame 1 hits (HSPs): ________
Annotated Domains: ____________________ ______________
__________________________________________________
Database sequence: | | | | | | 230
0 50 100 150 200
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 7..23
PRODOM PD064152: YP23_CAEEL 1..90
PRODOM PD053296: YP23_CAEEL 169..229
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.1, P = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Frame = +1
Query: 121 HTKLLFTISLLTLTY--FCCQKKTIPFPCYHLETV 219
+ ++LFT S+L+L Y F C KK P P E+V
Sbjct: 3 YIQMLFTASILSLGYLVFICGKKKKPKPTASTESV 37
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.152 0.475
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.349 0.145 0.509
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.378 0.172 0.685
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.151 0.570
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.151 0.442
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.373 0.161 0.626
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 84 84 10. 61 3 12 22 0.12 31
28 0.096 33
+2 0 85 84 10. 61 3 12 22 0.12 31
28 0.096 33
+1 0 85 84 10. 61 3 12 22 0.12 31
28 0.096 33
-1 0 85 85 10. 61 3 12 22 0.12 31
28 0.098 33
-2 0 85 84 10. 61 3 12 22 0.12 31
28 0.096 33
-3 0 84 84 10. 61 3 12 22 0.12 31
28 0.096 33
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 10
No. of states in DFA: 583 (57 KB)
Total size of DFA: 135 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 116.47u 1.15s 117.62t Elapsed: 00:00:45
Total cpu time: 116.51u 1.17s 117.68t Elapsed: 00:00:45
Start: Wed Feb 14 15:31:46 2001 End: Wed Feb 14 15:32:31 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000