BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE2380
(387 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42527881|ref|NP_972979.1| hypothetical protein TDE2380 [... 622 e-176
gi|153939787|ref|YP_001390744.1| hypothetical protein CLI_1... 129 4e-28
gi|148379358|ref|YP_001253899.1| ABC transporter, permease ... 128 7e-28
gi|126698863|ref|YP_001087760.1| putative ABC transporter, ... 86 5e-15
gi|15896183|ref|NP_349532.1| hypothetical protein CAC2930 [... 74 1e-11
gi|15894155|ref|NP_347504.1| Predicted membrane protein [Cl... 67 3e-09
gi|145954991|ref|ZP_01803995.1| hypothetical protein CdifQ_... 66 4e-09
gi|15896513|ref|NP_349862.1| Uncharacterized conserved memb... 55 6e-06
gi|37523042|ref|NP_926419.1| hypothetical protein glr3473 [... 55 8e-06
gi|23127653|ref|ZP_00109518.1| COG0842: ABC-type multidrug ... 55 1e-05
>gi|42527881|ref|NP_972979.1| hypothetical protein TDE2380 [Treponema denticola ATCC 35405]
gi|41818709|gb|AAS12898.1| membrane protein, putative [Treponema denticola ATCC 35405]
Length = 387
Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats.
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MKEFVSLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTV 60
MKEFVSLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTV
Sbjct: 1 MKEFVSLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTV 60
Query: 61 QMGEVNYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSE 120
QMGEVNYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSE
Sbjct: 61 QMGEVNYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSE 120
Query: 121 KISKNEKPELEILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLAENGENLLNNNINI 180
KISKNEKPELEILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLAENGENLLNNNINI
Sbjct: 121 KISKNEKPELEILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLAENGENLLNNNINI 180
Query: 181 VFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIV 240
VFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIV
Sbjct: 181 VFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIV 240
Query: 241 GSFLLAFVFIQVVVNMIVFISATIIFKLEITGLPLIFLAVVSTSFFALSIAILIARIFKK 300
GSFLLAFVFIQVVVNMIVFISATIIFKLEITGLPLIFLAVVSTSFFALSIAILIARIFKK
Sbjct: 241 GSFLLAFVFIQVVVNMIVFISATIIFKLEITGLPLIFLAVVSTSFFALSIAILIARIFKK 300
Query: 301 ESQLALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFSPLYWLLEMLDKEKLFPN 360
ESQLALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFSPLYWLLEMLDKEKLFPN
Sbjct: 301 ESQLALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFSPLYWLLEMLDKEKLFPN 360
Query: 361 ILIVWAMTAAIFTAGSWKIKEFNNEIN 387
ILIVWAMTAAIFTAGSWKIKEFNNEIN
Sbjct: 361 ILIVWAMTAAIFTAGSWKIKEFNNEIN 387
>gi|153939787|ref|YP_001390744.1| hypothetical protein CLI_1479 [Clostridium botulinum F str.
Langeland]
gi|152935683|gb|ABS41181.1| putative membrane protein [Clostridium botulinum F str. Langeland]
Length = 366
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 105/373 (28%), Positives = 185/373 (49%), Gaps = 20/373 (5%)
Query: 11 QLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTVQMGEVNYFVD 70
Q KR++K+I ++I P +I +I N K + M +V + V+
Sbjct: 10 QFKRMIKDIKVIGFMLIMPLVVITII-------------NFAIKSGGGSTIMVDVAFNVE 56
Query: 71 DTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSEKISKNEKPEL 130
D G K + +++ K E L + + IPK+FSEKI K EKPE+
Sbjct: 57 DNGKEGKQLLEELKIPTKSIFYKDK-DKAIESLNKNDVVAVYEIPKNFSEKIKKGEKPEI 115
Query: 131 EILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLAENGENLLNNNINIVFKTPNNKNI 190
+ K E ++LN +IN + +N + + + ++ L NN++ V + N KN+
Sbjct: 116 KAYKKEIGNGTLPIEKSLNNNINKKVRENLLINKNIIKSKNQLDNNSVKTVIE--NTKNV 173
Query: 191 ISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIVGSFLLAFVFI 250
+ +++L++ + IIF + + ++++ F++ +L RAI + N F+I+G L + I
Sbjct: 174 EAGAFLVLSLIINF-IIFSANNVSSEILNFKKQNILKRAITTSNRGFEIIGGIYLGMILI 232
Query: 251 QVVVNMIVFISATIIFKLEITGLPLIFLAVVSTSFFALSIAILIARIFKKESQLALASNI 310
Q V M V+I I L I + + S F++S+ + + R+F+ E +AL NI
Sbjct: 233 QSFVYMSVYIGGKFIIGYSFDNLIFILINTIVASIFSVSLGVFVTRLFQNEPVVALVVNI 292
Query: 311 TSLLTIVLFFLAIISVMPFVSIPP-VFKNISMFSPLYWLLEMLDKEKLFPNILIVWAMTA 369
+ T F +I S+ VS + NI F+P YW+ + + +FPNI IV M+
Sbjct: 293 VGISTT--FLSSIHSMGLSVSESSWILLNIEKFTPQYWIFDSIKNSSIFPNIFIVILMSL 350
Query: 370 AIFTAGSWKIKEF 382
+FTAG+ K+++F
Sbjct: 351 VLFTAGNIKVRDF 363
>gi|148379358|ref|YP_001253899.1| ABC transporter, permease protein [Clostridium botulinum A str.
ATCC 3502]
gi|153934168|ref|YP_001383734.1| hypothetical protein CLB_1407 [Clostridium botulinum A str. ATCC
19397]
gi|153936178|ref|YP_001387283.1| hypothetical protein CLC_1418 [Clostridium botulinum A str. Hall]
gi|148288842|emb|CAL82926.1| putative ABC transporter, permease protein [Clostridium botulinum A
str. ATCC 3502]
gi|152930212|gb|ABS35712.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
gi|152932092|gb|ABS37591.1| putative membrane protein [Clostridium botulinum A str. Hall]
Length = 366
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 106/373 (28%), Positives = 184/373 (49%), Gaps = 20/373 (5%)
Query: 11 QLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTVQMGEVNYFVD 70
Q KR++K+I ++I P +I +I N K + M +V + V+
Sbjct: 10 QFKRMIKDIKVIGFMLIMPLVVITII-------------NFAIKSGGGSTIMVDVAFNVE 56
Query: 71 DTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSEKISKNEKPEL 130
D G K + +++ K E L + + IPK+FSEKI K EKPE+
Sbjct: 57 DNGKEGKQLLEELKIPTKSIFYKDK-DKAIESLNKNDVVAVYEIPKNFSEKIKKGEKPEI 115
Query: 131 EILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLAENGENLLNNNINIVFKTPNNKNI 190
+ K E ++LN +IN + +N + + + ++ L +N++ V + N KNI
Sbjct: 116 KAYKKEIGNGTLPIEKSLNNNINKKVRENLLINKNIIKSKNQLDSNSVKAVIE--NTKNI 173
Query: 191 ISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIVGSFLLAFVFI 250
++TL++ + IIF + + ++++ F++ +L RAI + N F+I+G L + I
Sbjct: 174 EEGAFLVLTLIINF-IIFSANNVSSEILNFKKQNILKRAITTSNRGFEIIGGIYLGMILI 232
Query: 251 QVVVNMIVFISATIIFKLEITGLPLIFLAVVSTSFFALSIAILIARIFKKESQLALASNI 310
Q V M V+I I L I + + S F++S+ + + R+F+ ES + L NI
Sbjct: 233 QSFVYMSVYIGGKFIIGYSFDNLVFILINTIIASIFSVSLGVFVTRLFQNESVVVLVVNI 292
Query: 311 TSLLTIVLFFLAIISVMPFVSIPP-VFKNISMFSPLYWLLEMLDKEKLFPNILIVWAMTA 369
+ T F +I S+ VS + NI F+P YW+ + + +FPNI IV M+
Sbjct: 293 IGISTT--FLSSIHSMGLSVSKSSWILLNIEKFTPQYWIFDSMKNSSIFPNIFIVILMSL 350
Query: 370 AIFTAGSWKIKEF 382
+FTAG+ K+++F
Sbjct: 351 VLFTAGNIKVRDF 363
>gi|126698863|ref|YP_001087760.1| putative ABC transporter, permease protein [Clostridium difficile
630]
gi|115250300|emb|CAJ68122.1| putative ABC transporter, permease protein [Clostridium difficile
630]
Length = 360
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 94/389 (24%), Positives = 172/389 (44%), Gaps = 50/389 (12%)
Query: 5 VSLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTVQMGE 64
+ L +A +KR LKN T +++ P IILIF + F + N+ ++ Y +
Sbjct: 8 IRLTIANIKRYLKNHTLLINMVMLP---IILIFSLNFFI------NNSGNQSMYFSPVA- 57
Query: 65 VNYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSEKISK 124
V D+ +++ S R E K L K+ + ++ K+FS I K
Sbjct: 58 ---IVSDSSGKYEHKLINSSKLKENSFRLNEQDKAMNLLKNNKVSAVFVLDKNFSNSIDK 114
Query: 125 NEKPELEILKTE--------ESIILDNRVQALNLSINAYLMDNFIKSSGLAENGENLLNN 176
++P ++ K E ES I ++L L ++ + D K+
Sbjct: 115 LQRPVVKCFKIENGGGSLWAESQIESFITKSLKLKVDKNIDDKLTKT------------- 161
Query: 177 NINIVFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSE 236
NI+ P+ G ++ ++ Y + + + +DL +++ +L R I + N +
Sbjct: 162 --NIIDNKPDKNK----GSFLVVFLICYFMYINAAHLASDLFTLKKSNVLKRLISTDNKD 215
Query: 237 FKIVGSFLLAFVFIQVVVNMIVFISATII--FKLEITGLPLIFLAVVSTSFFALSIAILI 294
KI+ S L FIQ +V + +II F L + + + V++ SF + +
Sbjct: 216 IKIIFSIFLGLFFIQSIVYTFALLCFSIIEDFNLSLN----VLMIVLANSFVSTGFVFWV 271
Query: 295 ARIFKKESQLALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFSPLYWLLEMLDK 354
AR+FK ES ++L S SL+ + ++I S++P + N+S F+P YW ++ +
Sbjct: 272 ARVFKNESSISLISTFYSLIGLA---ISISSLIPSMDKLSFMTNLSKFTPFYWTIDAIKN 328
Query: 355 EKLFPNILIVWAMTAAIF-TAGSWKIKEF 382
+I + IF TAGS K+++F
Sbjct: 329 NGSILINIIALILIGIIFVTAGSLKLRDF 357
>gi|15896183|ref|NP_349532.1| hypothetical protein CAC2930 [Clostridium acetobutylicum ATCC 824]
gi|15025981|gb|AAK80872.1|AE007790_3 Uncharacterized conserved membrane protein [Clostridium
acetobutylicum ATCC 824]
Length = 388
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 90/410 (21%), Positives = 179/410 (43%), Gaps = 52/410 (12%)
Query: 5 VSLCLAQLKRIL-KNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTVQMG 63
+ + LKRIL +N + I+FP ++ L+ S ++ T+ +
Sbjct: 2 IYMAFLHLKRILVQNKRGFIITILFPTIVVSLVAFF-----------SNGVSSNTTINIA 50
Query: 64 EVNYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSEKIS 123
VN G S ++H + +E ++K A+ ++IPK+F++ I
Sbjct: 51 VVNNDTGKEGKKLLKILDKSNFSIHEVSYKEGEVEIKRNAASI----CVVIPKNFTQNIK 106
Query: 124 KNEKPELEILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLAEN-------------- 169
EKP + I+K S N A+ N+Y+ + S +E
Sbjct: 107 SGEKPSINIVKALNS----NVDTAVLNQFNSYIGKQMVLSKAFSETRAFGIKVNQNKFNR 162
Query: 170 --GENLLNNNINIVFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLA 227
+N+ N + + + NN++ L + T +++ +++ IVTD+ + + K+L
Sbjct: 163 EIKDNMKNTYVEVTSRYLNNESTRPLSGILSTNLIINFLMYSMIYIVTDIYELKRKKILK 222
Query: 228 RAIISPNSEFKIVGSFLLA-FVFIQVVVNMIVFISATII---FKLEITGLPLIFLAVVST 283
R++ +PN I+ S LLA F + + +++VF++ + F I + LIF +
Sbjct: 223 RSMSTPNKNSSILMSILLAMFGLLFIQSSILVFVTKNFLHVYFGKSIMAVMLIFAVL--- 279
Query: 284 SFFALSIAILIARIFKKESQLALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFS 343
+ LS +++ R K+E+ ++ ++T LT + + I + ++P V K I+ F+
Sbjct: 280 NLVVLSAGLVVVRWAKRETHISSVVSLTVTLTSAVGG-SFIPLDSIPNLPSVMKKIAYFT 338
Query: 344 PLYWLLEMLDK--------EKLFPNILIVWAMTAAIFTAGSWKIKEFNNE 385
P W +E L+K + P+I ++ F G+ + + NE
Sbjct: 339 PQKWAVEALNKISLENVGVHSILPHIAVLILFALVFFVIGAAQFRRTINE 388
>gi|15894155|ref|NP_347504.1| Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
gi|15023763|gb|AAK78844.1|AE007602_5 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
Length = 349
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 90/387 (23%), Positives = 178/387 (45%), Gaps = 45/387 (11%)
Query: 1 MKEFVSLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTV 60
M F + LA +R LKN + +I+ P +++ FV F L TD +
Sbjct: 1 MVNFFVIVLANCRRYLKNFRYTASMIVVP--ILLTGFVTFFNLGNFGTDADD-------- 50
Query: 61 QMGEVNYFVDDTGDLWKNFFAGSESTVHPENRE---EELAKVKEKLATGKIPGLIIIPKD 117
++ VN D G GSE + + ++ ++ +KE L G+ I KD
Sbjct: 51 KIAIVNL---DKGR------CGSELVKYLKVKDVFNKKDVAIKE-LKNNNYSGVYEIEKD 100
Query: 118 FSEKISKNEKPELEILKTEESIILDNRVQALNLSIN-AYLMDNFIKSSGLAENGENLLNN 176
F+ I+ P++ KT++ +S N A+ + K S + + N +
Sbjct: 101 FTVNINNGRVPKIISYKTDD------------VSYNEAFENEMKSKISLMVKGTGNEGKS 148
Query: 177 NINIVFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSE 236
N+ + ++ + S GL T +++Y ++ S DLIK R+ ++L R ++ +
Sbjct: 149 NLILKYREYRGSLLDSTGL---TFLIIYCMMLFSMNFSMDLIKLRKDRVLKRLSVTKHKT 205
Query: 237 FKIVGSFLLAFVFIQVVVNMIVFISATIIFKLEITGLPLIFLAVVSTSFFALSIAILIAR 296
+ IV + A Q ++ I F+ + ++ +I + + L + +S + I I+ +R
Sbjct: 206 YIIVWAMYFAMFITQTILYSISFLLSAVMCGYKIQNMGVTVLNIALSSIICIGIVIVGSR 265
Query: 297 IFKKESQLALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFSPLYWLLEMLDKEK 356
I K + +AS +S++ +++ ++ I+ S F+ + +P YW+++ ++K K
Sbjct: 266 ILKNDK---VASTGSSIVCLLMVYINIVGGNAANSNLSKFRKL---TPFYWIMDSVEKAK 319
Query: 357 LFPNILIVWAMTAAIFTAGSWKIKEFN 383
+FPN +IV + +FTAG + F+
Sbjct: 320 VFPNSIIVLLIALVLFTAGGFGYNNFS 346
>gi|145954991|ref|ZP_01803995.1| hypothetical protein CdifQ_04001399 [Clostridium difficile
QCD-32g58]
Length = 290
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 76/317 (23%), Positives = 140/317 (44%), Gaps = 58/317 (18%)
Query: 5 VSLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTV---- 60
+ L +A +KR +KN +++FP +IL+F + F T NSE + ++
Sbjct: 8 IRLTIANIKRYIKNHALLVNMVLFP---VILMFYLNFF-----TGNSENQSMYFSPVAIV 59
Query: 61 --QMGEVNYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDF 118
G+ + + D+ L +N F +E K + L K+ + I+ K+F
Sbjct: 60 SNSSGKYEHKLIDSSKLKENSFGLNEQD-----------KAMDLLKNNKVSAVFILDKNF 108
Query: 119 SEKISKNEKPELEILKTE--------ESIILDNRVQALNLSINAYLMDNFIKSSGLAENG 170
S I ++PE++ KTE ES I +L L I+ + D K+
Sbjct: 109 SSNIDNLKRPEVKCFKTENGGGSLWAESQIESFITNSLKLKIDRNIDDKLTKT------- 161
Query: 171 ENLLNNNINIVFKTPNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAI 230
N+++N+ + NKN ++ ++ Y + + + +DL +++ L R +
Sbjct: 162 -NIIDNS------SGKNKNSF-----LIVFLICYFMYINAAHLASDLFSLKKSNTLKRLV 209
Query: 231 ISPNSEFKIVGSFLLAFVFIQVVVNMIVFISATII--FKLEITGLPLIFLAVVSTSFFAL 288
+ +++ KI+ S L F Q +V + + T I FKL + L + V++ SF A
Sbjct: 210 STKHNDIKIIFSIFLGLFFTQAIVYTLTLVCFTSISNFKLTLNTL----MIVLANSFVAT 265
Query: 289 SIAILIARIFKKESQLA 305
IAR+FK E ++
Sbjct: 266 GFVFWIARVFKNEGSIS 282
>gi|15896513|ref|NP_349862.1| Uncharacterized conserved membrane protein, possible MDR-type
transporter [Clostridium acetobutylicum ATCC 824]
gi|15026343|gb|AAK81202.1|AE007822_8 Uncharacterized conserved membrane protein, possible MDR-type
transporter [Clostridium acetobutylicum ATCC 824]
Length = 378
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 115/265 (43%), Gaps = 10/265 (3%)
Query: 91 NREEELAKVKEKLATGKIPGLIIIPKDFSEKISKNEKPELEIL-KTEESIILDNRVQALN 149
+R + + +V+EK+ GK+ I+IP DFS K+ E+ +++L + +
Sbjct: 79 SRVKSIEEVREKMDKGKVHAAIVIPPDFSNKLQMREESNVQLLVDGSDPTTARTAFSSGV 138
Query: 150 LSINAYLMDNFIKSSGLAE-NGENLLNNNINIVFKTPNNKNIISLGLKIMTLVVLYMIIF 208
+S Y M K G E +N+ + N N+ + I L+ L M
Sbjct: 139 VSGQQYGMK---KLQGFGEKTSSKFQEGGVNVNTRVLYNPNLRNQNFTIPGLIGLIMQNI 195
Query: 209 GSTAIVTDLIKFRETKMLARAIISPNSEFKIVGSFLLAFVFIQVVVNMIVFISATIIFKL 268
L++ RE + + +SP +I+ L+ ++FI + + + F +
Sbjct: 196 TILLTAFALVRERERGTIEQLTVSPLKAGEIILGKLVPYIFIGYIDFLFSLVLGIKWFNV 255
Query: 269 EITG-LPLIFLAVVSTSFFALSIAILIARIFKKESQLALASNITSLLTIVLFFLAIISVM 327
I G +PL+ L + AL+I ILI+ I K + Q + + L +I+L V
Sbjct: 256 PINGSIPLLLLLGFAFVICALAIGILISTISKTQLQAMQLTILVLLPSILLSGF----VF 311
Query: 328 PFVSIPPVFKNISMFSPLYWLLEML 352
P ++P V + I PL + L +L
Sbjct: 312 PREAMPKVIQLIGNVLPLTYFLNIL 336
>gi|37523042|ref|NP_926419.1| hypothetical protein glr3473 [Gloeobacter violaceus PCC 7421]
gi|35214045|dbj|BAC91414.1| glr3473 [Gloeobacter violaceus PCC 7421]
Length = 403
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 203 LYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIVGSFLLAFVFIQVVVNMIVFISA 262
++ I F A+ +++ R++ L R +P ++ LL F I +V A
Sbjct: 217 IFGIFFIVNALALSILRERQSGTLTRLAAAPLRIPVLLAGKLLPFYLINLV-------QA 269
Query: 263 TIIFKLEITGL--------PLIFLAVVSTSFFALSIAILIARIFKKESQLALASNITSLL 314
++F L I GL P + L ++ + A S+ +LIA +F+ QL I S+L
Sbjct: 270 ALMFALGIFGLGLVVGAQWPALILVTLAVAAVATSLGLLIATLFETPEQLG---GIASVL 326
Query: 315 TIVLFFLAIISVMPFVSIPPVFKNISMFSPLYWLLE-----MLDKE---KLFPNILIVWA 366
+VL L I V FV +P + + ++ +P YW LE +L E + P + ++
Sbjct: 327 VVVLAALGGILVPGFV-MPELMRKLAALTPQYWALEGYQNVLLRNEGVVGVLPQVGVLLL 385
Query: 367 MTAAIFTAGSWKI 379
+F +W++
Sbjct: 386 FAIGLFLLATWRL 398
>gi|23127653|ref|ZP_00109518.1| COG0842: ABC-type multidrug transport system, permease component
[Nostoc punctiforme PCC 73102]
Length = 373
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 77/342 (22%), Positives = 157/342 (45%), Gaps = 31/342 (9%)
Query: 6 SLCLAQLKRILKNITNASMLIIFPFAMIILIFVIRFVLDPKDTDNSETKKTDYTVQMGEV 65
SL ++ +IL+N +LI+ P ++L F L+P D N DY +
Sbjct: 14 SLVRKEINQILRNRQLIVLLIVPPTVQLLLY---GFALNP-DVHNLRLGVIDY----ANI 65
Query: 66 NYFVDDTGDLWKNFFAGSESTVHPENREEELAKVKEKLATGKIPGLIIIPKDFSEKISKN 125
+ + + N ES P++ ++ +V+E GK+ +IIP +F +++
Sbjct: 66 SASRELVSAMTSNHTFNLESV--PKSEKDLSRQVEE----GKLDVGLIIPPNFPRQLAN- 118
Query: 126 EKPELEILKTEESIILDNRVQALNLSINAYLMDNFIKSSGLA-ENGENLLNNNINIVFKT 184
K+ E + + V A I A ++ I+ + G+ + +VF
Sbjct: 119 --------KSAEIQVFIDGVNANTAGIAANYVNQIIQQYNFSLAQGQISPPVSTEVVFLY 170
Query: 185 PNNKNIISLGLKIMTLVVLYMIIFGSTAIVTDLIKFRETKMLARAIISPNSEFKIVGSFL 244
N + S + ++ L + + G+ +++ ++T L + +++P+S ++I+ + +
Sbjct: 171 --NPGLTSSWFFVPGVMGLVLTLIGTLVSAVTVVREKDTGTLEQLLMTPSSNWEILLAKI 228
Query: 245 LAFVFIQVVVNMIVFISATIIFKLEITGLPLIFLAVVST-SFFALSIAILIARIFKKESQ 303
+ F+ + ++ TI+F L G L+FLA+ S F +S+ I++A I + Q
Sbjct: 229 IPLAFLLMGDVLLALTLGTIVFSLPFRGSFLLFLALSSMYVFVGISLGIMLATICGSQQQ 288
Query: 304 LALASNITSLLTIVLFFLAIISVMPFVSIPPVFKNISMFSPL 345
+ L S +L I ++ P S+PP+F+ +S+F+PL
Sbjct: 289 VLLTSFFINLPMI----QTSGAISPIESMPPLFQFLSLFNPL 326
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.325 0.140 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,254,560,259
Number of Sequences: 5470121
Number of extensions: 49786604
Number of successful extensions: 233581
Number of sequences better than 1.0e-05: 50
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 233534
Number of HSP's gapped (non-prelim): 52
length of query: 387
length of database: 1,894,087,724
effective HSP length: 135
effective length of query: 252
effective length of database: 1,155,621,389
effective search space: 291216590028
effective search space used: 291216590028
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)