Handout     NAR 2006 Paper     NAR 2002 Paper     FAQ     MIAME     Email GEO  
   NCBI > GEO > Accession Display Not logged in | Login
GEO help: Mouse over screen elements for information.
Scope:    Format:    Amount:   GEO accession:    Go
Series GSE8714 Query DataSets for GSE8714
Status Public on Aug 06, 2008
Title Gene expression after transfection of IGF-II specific siRNAs
Organism(s) Homo sapiens
Experiment type Expression profiling by array
Summary Total RNA was isolated from HuH-7 cells after transfection of IGF-II specific siRNAs. Gene expression profiling was performed using the Affymetrix Human Genome U133A 2.0 Arrays. The raw data were analysed using mixed model ANOVA.
Keywords: transfection with siRNA
 
Overall design Cells transfected with two independent siRNAs (ds1 and ds2) as well as untransfected cells were examined. For each condition biological duplicates were used for gene expression profiling
 
Citation(s)
Submission date Aug 07, 2007
Contact name Xiaolei Yu
Organization name University Heidelberg
Department ZMF
Street address Theodor-Kutzer-Ufer
City Mannheim
ZIP/Postal code 68167
Country Germany
 
Platforms (1)
GPL5705 Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: MBNI Version 9 (UniGene 199)]
Samples (6)
GSM215345 ds1 A chip5
GSM215346 ds1 B chip6
GSM215359 ds3 A chip7

Final group-level condensed data from SAS header descriptions
AffyID
GeneChip_Array
Species_Scientific_Name
Annotation_Date
Sequence_Type
Sequence_Source
Transcript_ID_Array_Design_
Target_Description
Representative_Public_ID
Archival_UniGene_Cluster
UniGene_ID
Genome_Version
Alignments
Gene_Title
Gene_Symbol
Chromosomal_Location
Unigene_Cluster_Type
Ensembl
Entrez_Gene
SwissProt
EC
OMIM
RefSeq_Protein_ID
RefSeq_Transcript_ID
FlyBase
AGI
WormBase
MGI_Name
RGD_Name
SGD_accession_number
Gene_Ontology_Biological_Proces
Gene_Ontology_Cellular_Componen
Gene_Ontology_Molecular_Functio
Pathway
Protein_Families
Protein_Domains
InterPro
Trans_Membrane
QTL
Annotation_Description
Annotation_Transcript_Cluster
Transcript_Assignments
Annotation_Notes
VarianceChipID
VarianceResidual
RSquared
ProbFType3_treatment
ProbFType3_Probe
Lsm_contr
Lsm_ds1
Lsm_ds3
StdLsm_contr
StdLsm_ds1
StdLsm_ds3
Estimate_ds1_vs_contr
Estimate_ds3_vs_contr
NegLog10p_ds1_vs_contr
NegLog10p_ds3_vs_contr

Data table
AffyID GeneChip_Array Species_Scientific_Name Annotation_Date Sequence_Type Sequence_Source Transcript_ID_Array_Design_ Target_Description Representative_Public_ID Archival_UniGene_Cluster UniGene_ID Genome_Version Alignments Gene_Title Gene_Symbol Chromosomal_Location Unigene_Cluster_Type Ensembl Entrez_Gene SwissProt EC OMIM RefSeq_Protein_ID RefSeq_Transcript_ID FlyBase AGI WormBase MGI_Name RGD_Name SGD_accession_number Gene_Ontology_Biological_Proces Gene_Ontology_Cellular_Componen Gene_Ontology_Molecular_Functio Pathway Protein_Families Protein_Domains InterPro Trans_Membrane QTL Annotation_Description Annotation_Transcript_Cluster Transcript_Assignments Annotation_Notes VarianceChipID VarianceResidual RSquared ProbFType3_treatment ProbFType3_Probe Lsm_contr Lsm_ds1 Lsm_ds3 StdLsm_contr StdLsm_ds1 StdLsm_ds3 Estimate_ds1_vs_contr Estimate_ds3_vs_contr NegLog10p_ds1_vs_contr NegLog10p_ds3_vs_contr
205492_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Consensus sequence GenBank Hs.100058.0 Consensus includes gb:AW090187 /FEA=EST /DB_XREF=gi:6047531 /DB_XREF=est:xc92b10.x1 /CLONE=IMAGE:2591707 /UG=Hs.100058 dihydropyrimidinase-like 4 /FL=gb:NM_006426.1 gb:AB006713.1 NM_006426 Hs.100058 Hs.100058 March 2006 (NCBI Build chr10:133850393-133869268 (+) // 98.38 // q26.3 dihydropyrimidinase-like 4 DPYSL4 chr10q26 full length ENSG00000151640 10570 O14531 --- 60840 NP_006417.1 NM_006426 --- --- --- --- --- --- 0007399 // nervous system development // traceable author statement --- 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Mat NM_006426(11) ENSESTT00000040033 // --- // ensembl_est // 10 // --- /// NM_006426 // Homo sapiens dihydropyrimidinase-like 4 (DPYSL4), mRNA. // refseq // 11 // --- /// ENST00000368629 // ensembl_transcript // 5 // Cross Hyb Matching Probes /// ENST00000368627 // ensem 0.005320 0.03247 0.9741882319 0.2310 <.0001 -1.2893 -1.3078 -1.3212 0.2409 -0.02858 -0.2237 -0.01848 -0.03186 0.0847134995 0.1552293405
205493_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g11321616 gb:NM_006426.1 /DEF=Homo sapiens dihydropyrimidinase-like 4 (DPYSL4), mRNA. /FEA=mRNA /GEN=DPYSL4 /PROD=dihydropyrimidinase-like 4 /DB_XREF=gi:11321616 /UG=Hs.100058 dihydropyrimidinase-like 4 /FL=gb: NM_006426 Hs.100058 Hs.100058 March 2006 (NCBI Build chr10:133850393-133869256 (+) // 98.52 // q26.3 dihydropyrimidinase-like 4 DPYSL4 chr10q26 full length ENSG00000151640 10570 O14531 --- 60840 NP_006417.1 NM_006426 --- --- --- --- --- --- 0007399 // nervous system development // traceable author statement --- 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation --- --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Mat NM_006426(11) NM_006426 // Homo sapiens dihydropyrimidinase-like 4 (DPYSL4), mRNA. // refseq // 11 // --- /// ENST00000338492 // cdna:known-ccds chromosome:NCBI36:10:1 --- 0.005320 0.03247 0.9741882319 0.2310 <.0001 -1.2893 -1.3078 -1.3212 0.2409 -0.02858 -0.2237 -0.01848 -0.03186 0.0847134995 0.1552293405
214301_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Consensus sequence GenBank Hs.100058.1 gb:AI857455 /DB_XREF=gi:5511071 /DB_XREF=wl57d09.x1 /CLONE=IMAGE:2429009 /FEA=EST /CNT=10 /TID=Hs.100058.1 /TIER=Stack /STK=8 /UG=Hs.100058 /LL=10570 /UG_GENE=DPYSL4 /UG_TITLE=dihydropyrimidinase-like AI857455 Hs.100058 Hs.100058 March 2006 (NCBI Build chr10:133868392-133868912 (-) // 99.43 // q26.3 Dihydropyrimidinase-like 4 DPYSL4 chr10q26 full length --- 10570 O14531 --- 60840 NP_006417.1 NM_006426 --- --- --- --- --- --- 0007399 // nervous system development // traceable author statement --- 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation --- --- --- --- This probe set was annotated using the Accession mapped clusters based pipeline to a UniGene identifier using 10 transcripts. // false AI871387,AW149782,W96328,AI275488,AI857455 AA018272 // ze50g08.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-362462 /clone_end=3' /gb=AA018272 /gi=1481727 /ug=Hs.100058 /len=453 // gb // --- // --- // NM_006426 // refseq // 11 // Negative Strand Matching Probes /// ENST00000338492 // ensembl_transcri 0.005320 0.03247 0.9741882319 0.2310 <.0001 -1.2893 -1.3078 -1.3212 0.2409 -0.02858 -0.2237 -0.01848 -0.03186 0.0847134995 0.1552293405
207025_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g9966910 gb:NM_020435.1 /DB_XREF=gi:9966910 /GEN=CX46.6 /FEA=FLmRNA /CNT=6 /TID=Hs.100072.0 /TIER=FL /STK=4 /UG=Hs.100072 /LL=57165 /DEF=Homo sapiens connexin46.6 (CX46.6), mRNA. /PROD=connexin46.6 /FL=gb:NM_0 NM_020435 Hs.100072 Hs.100072 March 2006 (NCBI Build chr1:226412063-226414150 (+) // 94.35 // q42.13 gap junction protein, alpha 12, 47kDa GJA12 chr1q41-q42 full length ENSG00000198835 57165 Q5T442 --- 60880 NP_065168.2 NM_020435 --- --- --- --- --- --- 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotat 0015285 // connexon channel activity // inferred from electronic annotation --- --- NP_065168.2 // span:21-43,80-102,212-234,265-284 // numtm:4 /// ENSP00000355675 // span:21-43,80-102,212-234,265-284 // numtm:4 --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Mat NM_020435(11) NM_020435 // Homo sapiens gap junction protein, alpha 12, 47kDa (GJA12), mRNA. // refseq // 11 // --- /// ENST00000366714 // cdna:known-ccds chromosome:N --- 0.001565 0.02586 0.9579967232 0.4495 <.0001 -0.6461 -0.6260 -0.6116 0.1820 0.6479 0.9814 0.02013 0.03454 0.1259348759 0.2350345605
214302_x_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Consensus sequence GenBank Hs.100072.1 gb:BF061637 /DB_XREF=gi:10820547 /DB_XREF=7i82c02.x1 /CLONE=IMAGE:3341186 /FEA=EST /CNT=14 /TID=Hs.100072.1 /TIER=Stack /STK=8 /UG=Hs.100072 /LL=57165 /UG_GENE=CX46.6 /UG_TITLE=connexin46.6 BF061637 Hs.100072 Hs.100072 March 2006 (NCBI Build chr1:226413048-226413556 (-) // 100.0 // q42.13 Gap junction protein, alpha 12, 47kDa GJA12 chr1q41-q42 full length --- 57165 Q5T442 --- 60880 NP_065168.2 NM_020435 --- --- --- --- --- --- 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotat 0015285 // connexon channel activity // inferred from electronic annotation --- --- --- --- This probe set was annotated using the Accession mapped clusters based pipeline to a UniGene identifier using 14 transcripts. // false AI868661,AI928698,AI871332,AW166439,AW1191 AI240177 // qh39h01.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1847089 /clone_end=3' /gb=AI240177 /gi=3835574 /ug=Hs.100072 /len=450 // gb // --- // --- / NM_020435 // refseq // 11 // Negative Strand Matching Probes /// ENST00000366714 // ensembl_transcri 0.001565 0.02586 0.9579967232 0.4495 <.0001 -0.6461 -0.6260 -0.6116 0.1820 0.6479 0.9814 0.02013 0.03454 0.1259348759 0.2350345605
204789_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g5174400 gb:NM_005892.1 /DEF=Homo sapiens formin-like (FMNL), mRNA. /FEA=mRNA /GEN=FMNL /PROD=formin-like /DB_XREF=gi:5174400 /UG=Hs.100217 formin-like /FL=gb:BC001710.1 gb:NM_005892.1 NM_005892 Hs.100217 Hs.100217 March 2006 (NCBI Build chr17:40675490-40680469 (+) // 99.39 // q21.31 formin-like 1 FMNL1 chr17q21 full length ENSG00000184922 752 O95466 /// Q2T9F0 /// Q6ZNK3 --- 60465 NP_005883.2 NM_005892 --- --- --- --- --- --- 0008150 // biological_process // --- /// 0016043 // cell organization and biogenesis // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization and biogenesis // inferred fr 0005575 // cellular_component // --- 0003674 // molecular_function // --- /// 0003779 // actin binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Mat AK131091(9),NM_005892(11) ENSESTT00000035902 // --- // ensembl_est // 11 // --- /// ENSESTT00000035903 // --- // ensembl_est // 11 // --- /// NM_005892 // Homo sapiens formin-like GENSCAN00000014571 // ensembl_prediction // 4 // Cross Hyb Matching Probes 0.001171 0.03112 0.9712985383 0.1304 <.0001 -0.5803 -0.5420 -0.5000 -0.8447 -0.2450 0.4142 0.03823 0.08025 0.2398418717 0.617279894
213429_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Consensus sequence GenBank Hs.100261.0 Consensus includes gb:AW025579 /FEA=EST /DB_XREF=gi:5879109 /DB_XREF=est:wu75b04.x1 /CLONE=IMAGE:2525839 /UG=Hs.100261 Homo sapiens mRNA; cDNA DKFZp564B222 (from clone DKFZp564B222) AW025579 Hs.100261 Hs.100261 March 2006 (NCBI Build chr10:60258964-60261202 (+) // 95.55 // q21.1 CDNA FLJ26539 fis, clone KDN09310 --- --- --- ENSG00000122870 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a UniGene identifier using 1 transcripts. // false // Matchin AK130049(11) AK130049 // Homo sapiens cDNA FLJ26539 fis, clone KDN09310. // gb // 11 // --- /// ENST00000373886 // cdna:known chromosome:NCBI36:10:59942906:60261201:1 --- 0.008691 0.04392 0.9588403853 <.0001 <.0001 1.3249 1.5064 1.5931 -0.2465 0.6047 1.0110 0.1815 0.2682 0.936806062 1.6771286643
204123_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g7710125 gb:NM_013975.1 /DEF=Homo sapiens ligase III, DNA, ATP-dependent (LIG3), transcript variant alpha, mRNA. /FEA=mRNA /GEN=LIG3 /PROD=ligase III, DNA, ATP-dependent, isoform alpha /DB_XREF=gi:7710125 /UG NM_013975 Hs.100299 Hs.100299 March 2006 (NCBI Build chr17:30331696-30355936 (+) // 99.33 // q12 ligase III, DNA, ATP-dependent LIG3 chr17q11.2-q12 full length ENSG00000005156 3980 P49916 /// Q6NVK3 /// Q6ZUA5 /// Q96D EC:6. 60094 NP_002302.2 /// N NM_002311 /// N --- --- --- --- --- --- 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006310 / 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003 --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Mat AK125853(9),NM_013975(9) ENSESTT00000007930 // --- // ensembl_est // 9 // --- /// NM_013975 // Homo sapiens ligase III, DNA, ATP-dependent (LIG3), nuclear gene encoding mitochond AK127668 // gb // 9 // Negative Strand Matching Probes 0.000175 0.01865 0.9675082936 <.0001 <.0001 0.2273 0.2326 0.2307 0.2951 0.3841 0.3526 0.005288 0.003415 0.0598457504 0.0377952382
207348_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g7710127 gb:NM_002311.2 /DEF=Homo sapiens ligase III, DNA, ATP-dependent (LIG3), transcript variant beta, mRNA. /FEA=mRNA /GEN=LIG3 /PROD=ligase III, DNA, ATP-dependent, isoform beta /DB_XREF=gi:7710127 /UG=H NM_002311 Hs.100299 Hs.100299 March 2006 (NCBI Build chr17:30331696-30354269 (+) // 99.93 // q12 ligase III, DNA, ATP-dependent LIG3 chr17q11.2-q12 full length ENSG00000005156 3980 P49916 /// Q6NVK3 /// Q6ZUA5 /// Q96D EC:6. 60094 NP_002302.2 /// N NM_002311 /// N --- --- --- --- --- --- 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006310 / 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003 --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 3 transcripts. // false // Mat AK125853(10),NM_002311(11),NM_013975(11) ENSESTT00000007929 // --- // ensembl_est // 11 // --- /// NM_002311 // Homo sapiens ligase III, DNA, ATP-dependent (LIG3), nuclear gene encoding mitochon ENSESTT00000007930 // ensembl_est // 3 // Cross Hyb Matching Probes 0.000175 0.01865 0.9675082936 <.0001 <.0001 0.2273 0.2326 0.2307 0.2951 0.3841 0.3526 0.005288 0.003415 0.0598457504 0.0377952382
206873_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g4557396 gb:NM_001215.1 /DEF=Homo sapiens carbonic anhydrase VI (CA6), mRNA. /FEA=mRNA /GEN=CA6 /PROD=carbonic anhydrase VI precursor /DB_XREF=gi:4557396 /UG=Hs.100322 carbonic anhydrase VI /FL=gb:M57892.1 gb: NM_001215 Hs.100322 Hs.100322 March 2006 (NCBI Build chr1:8928526-8957733 (+) // 99.24 // p36.23 carbonic anhydrase VI CA6 chr1p36.2 full length ENSG00000131686 765 P23280 /// Q5FBW3 /// Q5FBW4 /// Q5FC EC:4. 11478 NP_001206.2 NM_001215 --- --- --- --- --- --- 0006730 // one-carbon compound metabolism // inferred from electronic annotation --- 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0004089 // carbonate dehydratase activity // traceable author statement /// 0008270 // zinc ion binding // inferred Nitrogen metabolism // KEGG --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Mat NM_001215(9) NM_001215 // Homo sapiens carbonic anhydrase VI (CA6), mRNA. // refseq // 9 // --- /// ENST00000377443 // cdna:known chromosome:NCBI36:1:8928509:8957733: ENSESTT00000055616 // ensembl_est // 5 // Cross Hyb Matching Probes /// AB102863 // gb // 2 // Cross 0.01479 0.02493 0.9668962728 0.7876 <.0001 -1.5160 -1.5614 -1.5244 0.2188 -0.4785 0.08889 -0.04544 -0.00847 0.1352119179 0.0226485503
204481_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g4757865 gb:NM_004634.1 /DEF=Homo sapiens bromodomain and PHD finger containing, 1 (BRPF1), mRNA. /FEA=mRNA /GEN=BRPF1 /PROD=bromodomain-containing protein /DB_XREF=gi:4757865 /UG=Hs.1004 bromodomain and PHD NM_004634 Hs.1004 Hs.1004 March 2006 (NCBI Build chr3:9750813-9764682 (+) // 98.5 // p25.3 bromodomain and PHD finger containing, 1 BRPF1 chr3p26-p25 full length ENSG00000156983 7862 P55201 /// Q7Z6E0 /// Q8TCM6 --- 60241 NP_001003694.1 // NM_001003694 // --- --- --- --- --- --- 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic anno --- --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Mat NM_001003694(9),NM_004634(9) ENSESTT00000013657 // --- // ensembl_est // 9 // --- /// NM_001003694 // Homo sapiens bromodomain and PHD finger containing, 1 (BRPF1), transcript varian --- 0.003243 0.01244 0.9934903332 0.0018 <.0001 0.7300 0.8657 0.8703 -0.4424 0.8982 0.9439 0.1357 0.1403 1.2700857728 1.33512152
215631_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Consensus sequence GenBank Hs.306186.0 Consensus includes gb:AL050008.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564A063 (from clone DKFZp564A063); partial cds. /FEA=mRNA /GEN=DKFZp564A063 /PROD=hypothetical protein /DB_XREF=gi:4884078 /UG=Hs.30 AL050008 Hs.306186 Hs.100426 March 2006 (NCBI Build chr11:65861379-65865662 (-) // 96.5 // q13.1 breast cancer metastasis suppressor 1 BRMS1 chr11q13-q13.2 full length ENSG00000174744 25855 Q6IAI2 /// Q9HCU9 /// Q9Y3T1 --- 60625 NP_001020128.1 // NM_001024957 // --- --- --- --- --- --- 0007049 // cell cycle // inferred from electronic annotation /// 0008150 // biological_process // --- /// 0045786 // negative regulation of progression through cell cycle // inferred from electronic a 0005575 // cellular_component // --- 0003674 // molecular_function // --- --- --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 3 transcripts. // false // Mat CR620223(11),NM_001024957(11),NM_015399(11 ENSESTT00000014573 // --- // ensembl_est // 11 // --- /// CR620223 // full-length cDNA clone CS0DI058YN13 of Placenta Cot 25-normalized of Homo sapiens ( ENSESTT00000014571 // ensembl_est // 7 // Cross Hyb Matching Probes /// GENSCAN00000007503 // ensemb 0.000907 0.006489 0.9832282691 0.0092 <.0001 2.4370 2.4310 2.4105 0.4920 0.3728 -0.03504 -0.00600 -0.02651 0.0557871341 0.2983659813
205242_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g5453576 gb:NM_006419.1 /DB_XREF=gi:5453576 /GEN=SCYB13 /FEA=FLmRNA /CNT=61 /TID=Hs.100431.0 /TIER=FL+Stack /STK=45 /UG=Hs.100431 /LL=10563 /DEF=Homo sapiens small inducible cytokine B subfamily (Cys-X-Cys mot NM_006419 Hs.100431 Hs.100431 March 2006 (NCBI Build chr4:78651929-78752010 (+) // 98.6 // q21.1 chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) CXCL13 chr4q21 full length ENSG00000156234 10563 O43927 /// Q53X90 --- 60514 NP_006410.1 NM_006419 --- --- --- --- --- --- 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0007204 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // traceable author sta 0008009 // chemokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annota --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Mat BC012589(11),NM_006419(11) ENSESTT00000049932 // --- // ensembl_est // 11 // --- /// NM_006419 // Homo sapiens chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) (CXCL13), ENSESTT00000011336 // ensembl_est // 1 // Cross Hyb Matching Probes 0.003453 0.03678 0.9294410714 0.0529 <.0001 -1.7995 -1.7780 -1.8864 0.8699 1.1143 -0.1210 0.02144 -0.08695 0.0994763906 0.5317991967
204401_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g4504858 gb:NM_002250.1 /DB_XREF=gi:4504858 /GEN=KCNN4 /FEA=FLmRNA /CNT=64 /TID=Hs.10082.0 /TIER=FL+Stack /STK=39 /UG=Hs.10082 /LL=3783 /DEF=Homo sapiens potassium intermediatesmall conductance calcium-activat NM_002250 Hs.10082 Hs.10082 March 2006 (NCBI Build chr19:48962526-48977249 (-) // 100.0 // q13.31 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 KCNN4 chr19q13.2 full length ENSG00000104783 3783 O15554 /// Q53XR4 --- 60275 NP_002241.1 NM_002250 --- --- --- --- --- --- 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006952 // defense response // traceable author statement /// 0 0005624 // membrane fraction // not recorded /// 0008076 // voltage-gated potassium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 000 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding --- IPR00 NP_002241.1 // span:25-47,57-79,207-226,241-263,265-287 // numtm:5 /// ENSP00000262888 // span:25-47,57-79,207-226,241-263,265-287 // numtm:5 --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Mat CR598085(11),NM_002250(11) CR598085 // full-length cDNA clone CS0DK011YK11 of HeLa cells Cot 25-normalized of Homo sapiens (human). // gb // 11 // --- /// NM_002250 // Homo sapiens --- 0.000668 0.03706 0.9284677408 0.4293 <.0001 -1.2844 -1.2689 -1.3030 -0.3534 -0.00637 -0.7702 0.01549 -0.01860 0.0926550623 0.1133679385
Hs.100874 0.000833 0.02090 0.9626959857 <.0001 <.0001 0.5698 0.6868 0.5478 0.4293 0.9339 0.3343 0.1170 -0.02204 1.7827199556 0.1881919121
221135_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g7661837 gb:NM_014065.1 /DEF=Homo sapiens HT001 protein (HT001), mRNA. /FEA=mRNA /GEN=HT001 /PROD=HT001 protein /DB_XREF=gi:7661837 /UG=Hs.279040 HT001 protein /FL=gb:AF113539.1 gb:NM_014065.1 NM_014065 Hs.279040 Hs.100878 March 2006 (NCBI Build chr3:132215410-132225989 (-) // 91.94 // q22.1 asteroid homolog 1 (Drosophila) ASTE1 chr3q22.1 full length ENSG00000034533 28990 Q2TB18 /// Q3MIB6 /// Q8N6G4 /// Q96J --- --- NP_054784.2 NM_014065 --- --- --- --- --- --- 0006281 // DNA repair // inferred from electronic annotation --- 0004518 // nuclease activity // inferred from electronic annotation --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 3 transcripts. // false // Mat AF113539(11),BC069265(11),NM_014065(11) ENSESTT00000023300 // --- // ensembl_est // 11 // --- /// ENSESTT00000023301 // --- // ensembl_est // 11 // --- /// BC069265 // Homo sapiens asteroid hom GENSCAN00000019811 // ensembl_prediction // 1 // Cross Hyb Matching Probes /// NM_001001486 // refse 0.000358 0.02458 0.8425966688 <.0001 <.0001 -0.3587 -0.3405 -0.2684 -0.2424 -0.1023 0.4505 0.01827 0.09034 0.1424097174 1.1037111749
219370_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g9790192 gb:NM_019845.1 /DEF=Homo sapiens candidate mediator of the p53-dependent G2 arrest (REPRIMO), mRNA. /FEA=mRNA /GEN=REPRIMO /PROD=candidate mediator of the p53-dependent G2arrest /DB_XREF=gi:9790192 / NM_019845 Hs.100890 Hs.100890 March 2006 (NCBI Build chr2:154042098-154043568 (-) // 96.69 // q23.3 reprimo, TP53 dependent G2 arrest mediator candidate RPRM chr2q23.3 full length --- 56475 Q9NS64 --- --- NP_062819.1 NM_019845 --- --- --- --- --- --- 0007050 // cell cycle arrest // traceable author statement 0005737 // cytoplasm // traceable author statement --- --- --- NP_062819.1 // span:56-78 // numtm:1 --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Mat NM_019845(11) NM_019845 // Homo sapiens reprimo, TP53 dependent G2 arrest mediator candidate (RPRM), mRNA. // refseq // 11 // --- --- 0.004584 0.02573 0.9758124187 0.1132 <.0001 -1.1574 -1.2119 -1.2586 0.7756 0.08996 -0.4969 -0.05454 -0.1012 0.2894336273 0.6451057765
218827_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g8922371 gb:NM_018069.1 /DEF=Homo sapiens hypothetical protein FLJ10352 (FLJ10352), mRNA. /FEA=mRNA /GEN=FLJ10352 /PROD=hypothetical protein FLJ10352 /DB_XREF=gi:8922371 /UG=Hs.100914 hypothetical protein FLJ1 NM_018069 Hs.100914 Hs.100914 March 2006 (NCBI Build chr18:13077269-13115033 (+) // 99.85 // p11.21 centrosomal protein 192kDa CEP192 chr18p11.21 full length ENSG00000101639 55125 Q8TEP8 /// Q8WYT8 /// Q9H0F4 /// Q9HC --- --- NP_060539.2 /// N NM_018069 /// N --- --- --- --- --- --- --- --- --- --- --- --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 3 transcripts. // false // Mat AK094448(11),AL833494(11),NM_032142(11) NM_032142 // Homo sapiens centrosomal protein 192kDa (CEP192), mRNA. // refseq // 11 // --- /// AK094448 // Homo sapiens cDNA FLJ37129 fis, clone BRACE20 ENSESTT00000028921 // ensembl_est // 1 // Cross Hyb Matching Probes /// ENSESTT00000028922 // ensemb 0.008390 0.01391 0.9831570687 0.0163 <.0001 1.0411 1.0771 1.0983 0.6185 0.9185 1.0955 0.03594 0.05714 0.1444486697 0.2481714049
221603_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g12653394 gb:BC000467.1 /DEF=Homo sapiens, Similar to peroxisomal biogenesis factor 16, clone MGC:8550, mRNA, complete cds. /FEA=mRNA /PROD=Similar to peroxisomal biogenesis factor 16 /DB_XREF=gi:12653394 /UG= BC000467 Hs.100915 Hs.100915 March 2006 (NCBI Build chr11:45887796-45895956 (-) // 97.61 // p11.2 peroxisomal biogenesis factor 16 PEX16 chr11p11.2 full length ENSG00000121680 9409 Q9BWB9 /// Q9Y5Y5 --- 60336 NP_004804.1 /// N NM_004813 /// N --- --- --- --- --- --- 0007031 // peroxisome organization and biogenesis // traceable author statement 0005777 // peroxisome // traceable author statement /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integr --- --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Mat NM_057174(11) NM_057174 // Homo sapiens peroxisomal biogenesis factor 16 (PEX16), transcript variant 2, mRNA. // refseq // 11 // --- /// ENST00000241041 // cdna:known- GENSCAN00000017016 // ensembl_prediction // 5 // Cross Hyb Matching Probes 0 0.03469 0.973412721 0.0169 <.0001 -0.01081 -0.00307 -0.05266 0.8312 1.0419 -0.3084 0.007740 -0.04185 0.0951665852 0.7486305747
221604_s_at Human Genome U133A 2.0 Arr Homo sapiens Mar 8, 2007 Exemplar sequence GenBank g6681657 gb:AB016531.1 /DEF=Homo sapiens PEX16 mRNA, complete cds. /FEA=mRNA /GEN=PEX16 /DB_XREF=gi:6681657 /UG=Hs.100915 peroxisomal biogenesis factor 16 /FL=gb:BC004356.1 gb:AF118240.1 gb:NM_004813.1 gb:AB01 AB016531 Hs.100915 Hs.100915 March 2006 (NCBI Build chr11:45888300-45895964 (-) // 98.59 // p11.2 peroxisomal biogenesis factor 16 PEX16 chr11p11.2 full length ENSG00000121680 9409 Q9BWB9 /// Q9Y5Y5 --- 60336 NP_004804.1 /// N NM_004813 /// N --- --- --- --- --- --- 0007031 // peroxisome organization and biogenesis // traceable author statement 0005777 // peroxisome // traceable author statement /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integr --- --- IPR00 --- --- This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 2 transcripts. // false // Mat NM_004813(11),NM_057174(11) CR612893 // full-length cDNA clone CS0DC024YP05 of Neuroblastoma Cot 25-normalized of Homo sapiens (human). // gb // 11 // --- /// NM_004813 // Homo sapi --- 0 0.03469 0.973412721 0.0169 <.0001 -0.01081 -0.00307 -0.05266 0.8312 1.0419 -0.3084 0.007740 -0.04185 0.0951665852 0.7486305747

Total number of rows: 18715

Table truncated, full table size 27219 Kbytes.




Download family Format
SOFT formatted family file(s) SOFT
MINiML formatted family file(s) MINiML
Series Matrix File(s) TXT

Supplementary file Size Download File type/resource
GSE8714_RAW.tar 18.6 Mb (ftp)(http) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data is available on Series record
| NLM | NIH | GEO Help | Disclaimer | Section 508 |
NCBI Home NCBI Search NCBI SiteMap