BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= STr1210
(189 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55821217|ref|YP_139659.1| hypothetical protein stu1210 [... 318 1e-85
gi|116627944|ref|YP_820563.1| hypothetical protein STER_117... 314 1e-84
gi|1850895|emb|CAA72097.1| hypothetical protein [Streptococ... 312 5e-84
gi|77405311|ref|ZP_00782407.1| conserved hypothetical prote... 144 3e-33
gi|22536683|ref|NP_687534.1| hypothetical protein SAG0504 [... 144 3e-33
gi|77414013|ref|ZP_00790185.1| conserved hypothetical prote... 143 5e-33
gi|15675395|ref|NP_269569.1| hypothetical protein SPy_1491 ... 142 1e-32
gi|19746445|ref|NP_607581.1| hypothetical protein spyM18_15... 140 3e-32
gi|81096212|ref|ZP_00874560.1| similar to unknown proteins ... 138 2e-31
gi|24379066|ref|NP_721021.1| hypothetical protein SMU.588 [... 137 3e-31
gi|146319302|ref|YP_001199014.1| hypothetical protein SSU05... 137 5e-31
gi|76799719|ref|ZP_00781815.1| YfaA [Streptococcus agalacti... 122 9e-27
gi|116511327|ref|YP_808543.1| hypothetical protein LACR_052... 121 2e-26
gi|15672483|ref|NP_266657.1| hypothetical protein L101577 [... 116 7e-25
gi|125623362|ref|YP_001031845.1| hypothetical protein llmg_... 104 2e-21
gi|69246750|ref|ZP_00604098.1| conserved hypothetical prote... 98 2e-19
gi|29376236|ref|NP_815390.1| hypothetical protein EF1682 [E... 91 4e-17
gi|116494878|ref|YP_806612.1| hypothetical protein LSEI_139... 90 8e-17
gi|81428608|ref|YP_395608.1| Hypothetical extracellular pro... 83 9e-15
gi|46908093|ref|YP_014482.1| hypothetical protein LMOf2365_... 80 6e-14
gi|47093244|ref|ZP_00231016.1| conserved hypothetical prote... 79 1e-13
gi|154686420|ref|YP_001421581.1| YpmS [Bacillus amyloliquef... 79 1e-13
gi|16803901|ref|NP_465386.1| hypothetical protein lmo1861 [... 77 8e-13
gi|146321505|ref|YP_001201216.1| hypothetical protein SSU98... 75 2e-12
gi|47096903|ref|ZP_00234481.1| conserved hypothetical prote... 75 3e-12
gi|153196368|ref|ZP_01940738.1| conserved hypothetical prot... 74 3e-12
gi|116333436|ref|YP_794963.1| hypothetical protein LVIS_078... 74 4e-12
gi|16079232|ref|NP_390056.1| hypothetical protein BSU21730 ... 72 1e-11
gi|77412648|ref|ZP_00788921.1| conserved hypothetical prote... 72 2e-11
gi|52080681|ref|YP_079472.1| conserved protein YpmS [Bacill... 72 2e-11
gi|16801041|ref|NP_471309.1| hypothetical protein lin1975 [... 72 2e-11
gi|116873296|ref|YP_850077.1| hypothetical protein lwe1880 ... 70 5e-11
gi|15613744|ref|NP_242047.1| hypothetical protein BH1181 [B... 68 3e-10
gi|56420303|ref|YP_147621.1| hypothetical protein GK1768 [G... 66 1e-09
gi|149179678|ref|ZP_01858183.1| hypothetical protein BSG1_0... 65 1e-09
gi|28378521|ref|NP_785413.1| hypothetical protein lp_1866 [... 65 2e-09
gi|124522930|ref|ZP_01697307.1| conserved hypothetical prot... 64 4e-09
gi|116617873|ref|YP_818244.1| hypothetical protein LEUM_076... 62 2e-08
gi|138895320|ref|YP_001125773.1| hypothetical protein GTNG_... 61 4e-08
gi|118586883|ref|ZP_01544317.1| hypothetical protein OENOO_... 60 8e-08
gi|116491046|ref|YP_810590.1| hypothetical protein OEOE_101... 60 9e-08
gi|116492827|ref|YP_804562.1| hypothetical protein PEPE_106... 58 3e-07
gi|12830845|gb|AAK08217.1|AF320915_1 YfaA [Lactococcus lactis] 57 7e-07
gi|92089909|ref|ZP_01274830.1| conserved hypothetical prote... 57 8e-07
gi|148544005|ref|YP_001271375.1| hypothetical protein Lreu_... 56 1e-06
gi|68160802|gb|AAY86847.1| unknown extracellular protein lr... 56 1e-06
gi|89100602|ref|ZP_01173461.1| hypothetical protein B14911_... 55 1e-06
gi|90961692|ref|YP_535608.1| hypothetical protein LSL_0715 ... 55 2e-06
gi|126650227|ref|ZP_01722455.1| hypothetical protein BB1490... 55 3e-06
>gi|55821217|ref|YP_139659.1| hypothetical protein stu1210 [Streptococcus thermophilus LMG 18311]
gi|55823129|ref|YP_141570.1| hypothetical protein str1210 [Streptococcus thermophilus CNRZ1066]
gi|55737202|gb|AAV60844.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55739114|gb|AAV62755.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 189
Score = 318 bits (814), Expect = 1e-85, Method: Composition-based stats.
Identities = 188/189 (99%), Positives = 189/189 (100%)
Query: 1 VSKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLR 60
+SKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLR
Sbjct: 1 MSKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLR 60
Query: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA
Sbjct: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI
Sbjct: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
Query: 181 EFDIYKTIN 189
EFDIYKTIN
Sbjct: 181 EFDIYKTIN 189
>gi|116627944|ref|YP_820563.1| hypothetical protein STER_1176 [Streptococcus thermophilus LMD-9]
gi|116101221|gb|ABJ66367.1| Uncharacterized protein conserved in bacteria [Streptococcus
thermophilus LMD-9]
Length = 189
Score = 314 bits (805), Expect = 1e-84, Method: Composition-based stats.
Identities = 186/189 (98%), Positives = 187/189 (98%)
Query: 1 VSKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLR 60
+SKVWKWLFLGLLALNLALISVVTVRIMTPVE SPVSLPKGA KIGKYSMSKEELDASLR
Sbjct: 1 MSKVWKWLFLGLLALNLALISVVTVRIMTPVEMSPVSLPKGAAKIGKYSMSKEELDASLR 60
Query: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA
Sbjct: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI
Sbjct: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
Query: 181 EFDIYKTIN 189
EFDIYKTIN
Sbjct: 181 EFDIYKTIN 189
>gi|1850895|emb|CAA72097.1| hypothetical protein [Streptococcus thermophilus]
Length = 189
Score = 312 bits (800), Expect = 5e-84, Method: Composition-based stats.
Identities = 185/189 (97%), Positives = 186/189 (98%)
Query: 1 VSKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLR 60
+SKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELD SLR
Sbjct: 1 MSKVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDESLR 60
Query: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQ SELSA
Sbjct: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQESELSA 120
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR
Sbjct: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRS 180
Query: 181 EFDIYKTIN 189
EFDIYKTIN
Sbjct: 181 EFDIYKTIN 189
>gi|77405311|ref|ZP_00782407.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
gi|77176106|gb|EAO78879.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
Length = 200
Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 3/185 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGA---TKIGKYSMSKEELDASLRG 61
WKW FL LLA+NL+ +V+ R++ E + + G K+G ++ +K +L+ ++
Sbjct: 13 WKWAFLLLLAINLSFTAVIASRLIQVREPNTGKISTGVQDKVKVGTFTTNKSQLNKTIAL 72
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ + Y T KM +K+ +S I+FE SY++LG+ VPLY+YF P +GAV L+V+ S G
Sbjct: 73 YLKQYQTKKMNYKIYAASSSILFEGSYQLLGYEVPLYIYFEPYRLTNGAVQLKVTSFSVG 132
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL LP D L IK S KLP+++ I KK + +N+Q +KN +GI +A + DLVND
Sbjct: 133 TLPLPEKDVLQYIKSSYKLPNFVDIKPKKSVININLQDLKNKEGIYLKATAIDLVNDNFS 192
Query: 182 FDIYK 186
FDI+K
Sbjct: 193 FDIFK 197
>gi|22536683|ref|NP_687534.1| hypothetical protein SAG0504 [Streptococcus agalactiae 2603V/R]
gi|25010619|ref|NP_735014.1| hypothetical protein gbs0550 [Streptococcus agalactiae NEM316]
gi|76787964|ref|YP_329237.1| hypothetical protein SAK_0605 [Streptococcus agalactiae A909]
gi|77409331|ref|ZP_00786034.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
gi|22533523|gb|AAM99406.1|AE014214_20 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gi|23094973|emb|CAD46194.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563021|gb|ABA45605.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|77172063|gb|EAO75229.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
Length = 200
Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 3/185 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGA---TKIGKYSMSKEELDASLRG 61
WKW FL LLA+NL+ +V+ R++ E + + G K+G ++ +K +L+ ++
Sbjct: 13 WKWAFLLLLAINLSFTAVIASRLIQVREPNTGKISTGVQDKVKVGTFTTNKSQLNKTIAL 72
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ + Y T KM +K+ +S I+FE SY++LG+ VPLY+YF P +GAV L+V+ S G
Sbjct: 73 YLKQYQTKKMNYKIYAASSSILFEGSYQLLGYEVPLYIYFEPYRLTNGAVQLKVTSFSVG 132
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL LP D L IK S KLP+++ I KK + +N+Q +KN +GI +A + DLVND
Sbjct: 133 TLPLPEKDVLQYIKSSYKLPNFVDIKPKKSVININLQDLKNKEGIYLKATAIDLVNDNFS 192
Query: 182 FDIYK 186
FDI+K
Sbjct: 193 FDIFK 197
>gi|77414013|ref|ZP_00790185.1| conserved hypothetical protein [Streptococcus agalactiae 515]
gi|77159939|gb|EAO71078.1| conserved hypothetical protein [Streptococcus agalactiae 515]
Length = 200
Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 3/185 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGA---TKIGKYSMSKEELDASLRG 61
WKW FL LLA+NL+ +V+ R++ E + + G K+G ++ +K +L+ ++
Sbjct: 13 WKWAFLLLLAINLSFTAVIASRLIQVREPNTGKISTGVQDKVKVGTFTTNKSQLNKTIAL 72
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ + Y T KM +K+ +S I+FE SY++LG+ VPLY+YF P +GAV L+V+ S G
Sbjct: 73 YLKQYQTKKMNYKIYAASSSILFEGSYQLLGYEVPLYIYFEPYRLTNGAVQLKVTSFSVG 132
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL LP D L IK S KLP+++ I KK + +N+Q +KN +GI +A + DLVND
Sbjct: 133 TLPLPEKDVLQYIKSSYKLPNFVDIKPKKSVININLQDLKNKEGIYLKATAIDLVNDNFS 192
Query: 182 FDIYK 186
FDI+K
Sbjct: 193 FDIFK 197
>gi|15675395|ref|NP_269569.1| hypothetical protein SPy_1491 [Streptococcus pyogenes M1 GAS]
gi|71911037|ref|YP_282587.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS5005]
gi|94990749|ref|YP_598849.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS10270]
gi|13622581|gb|AAK34290.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853819|gb|AAZ51842.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS5005]
gi|94544257|gb|ABF34305.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS10270]
Length = 195
Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 3/185 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMT---PVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW FL LLA N A + V+ R++ P P KIG + ++E+L+ ++
Sbjct: 10 WKWSFLCLLAFNTAFLMVIASRLIQVREPESELIAKKPVKNIKIGTFVTTREQLNETVAS 69
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ +DY T+KM +K T+S I+FE +Y++LG+ VPLY+YF P E+GAV LQV S G
Sbjct: 70 YLKDYQTEKMSYKFYATSSSILFEGTYQLLGYEVPLYIYFQPHRLENGAVQLQVISFSVG 129
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL LP D L +K S KLP ++ + + +++N+Q ++ND + +A+ DL ND I
Sbjct: 130 TLPLPEKDVLQYLKSSYKLPSFVKVMPNQSAIVVNLQDIQNDAKVYLKAKKIDLFNDEIS 189
Query: 182 FDIYK 186
F+IYK
Sbjct: 190 FNIYK 194
>gi|19746445|ref|NP_607581.1| hypothetical protein spyM18_1509 [Streptococcus pyogenes MGAS8232]
gi|21910683|ref|NP_664951.1| hypothetical protein SpyM3_1147 [Streptococcus pyogenes MGAS315]
gi|28895627|ref|NP_801977.1| hypothetical protein SPs0715 [Streptococcus pyogenes SSI-1]
gi|50914590|ref|YP_060562.1| Hypothetical membrane associated protein [Streptococcus pyogenes
MGAS10394]
gi|71903825|ref|YP_280628.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS6180]
gi|94988848|ref|YP_596949.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS9429]
gi|94992739|ref|YP_600838.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS2096]
gi|94994726|ref|YP_602824.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS10750]
gi|139473484|ref|YP_001128200.1| hypothetical protein SpyM50629 [Streptococcus pyogenes str.
Manfredo]
gi|19748647|gb|AAL98080.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21904886|gb|AAM79754.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810876|dbj|BAC63810.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50903664|gb|AAT87379.1| Hypothetical membrane associated protein [Streptococcus pyogenes
MGAS10394]
gi|71802920|gb|AAX72273.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS6180]
gi|94542356|gb|ABF32405.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS9429]
gi|94546247|gb|ABF36294.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS2096]
gi|94548234|gb|ABF38280.1| hypothetical membrane associated protein [Streptococcus pyogenes
MGAS10750]
gi|134271731|emb|CAM29964.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
Length = 195
Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 3/185 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMT---PVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW FL LLA N A + V+ R++ P P KIG + ++E+L+ ++
Sbjct: 10 WKWSFLCLLAFNTAFLMVIASRLIQVREPESELIAKKPVKNIKIGTFVTTREQLNETVAS 69
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ +DY T KM +K T+S I+FE +Y++LG+ VPLY+YF P E+GAV LQV S G
Sbjct: 70 YLKDYQTKKMSYKFYATSSSILFEGTYQLLGYEVPLYIYFQPHRLENGAVQLQVISFSVG 129
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL LP D L +K S KLP ++ + + +++N+Q ++ND + +A+ DL ND I
Sbjct: 130 TLPLPEKDVLQYLKSSYKLPSFVKVMPNQSAIVVNLQDIQNDAKVYLKAKKIDLFNDEIS 189
Query: 182 FDIYK 186
F+IYK
Sbjct: 190 FNIYK 194
>gi|81096212|ref|ZP_00874560.1| similar to unknown proteins [Streptococcus suis 89/1591]
gi|80977699|gb|EAP41234.1| similar to unknown proteins [Streptococcus suis 89/1591]
Length = 198
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 118/185 (63%), Gaps = 2/185 (1%)
Query: 4 VWKWLFLGLLALNLALISVVTVRIMTPVE--TSPVSLPKGATKIGKYSMSKEELDASLRG 61
+WKWLFL LAL + V+ RI T E T V TK+G +S ++E+L+ +L
Sbjct: 11 IWKWLFLAQLALLIGCGIVLYTRIQTDREDLTKLVQTSTEDTKVGTFSTNREQLNQTLTN 70
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ ++Y T++ +++ VT+ ++VFE SY++ G +PLY+YF P E G+++L+++E+S G
Sbjct: 71 YLKEYQTEEFSYQLFVTSQQVVFEGSYQIFGVTIPLYIYFQPSKMEDGSILLRITEISVG 130
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
+L LP + L ++++ KLP ++ IDS++ +V + + +KN G+ +A + DL ND+
Sbjct: 131 SLSLPKAEVLAYLQKNYKLPAFVKIDSEQAQVQVQLTELKNKFGLYGKANTIDLYNDQFI 190
Query: 182 FDIYK 186
DIY+
Sbjct: 191 VDIYR 195
>gi|24379066|ref|NP_721021.1| hypothetical protein SMU.588 [Streptococcus mutans UA159]
gi|24376964|gb|AAN58327.1|AE014903_3 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 199
Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/184 (39%), Positives = 117/184 (63%), Gaps = 2/184 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVS--LPKGATKIGKYSMSKEELDASLRGF 62
WKW FL LLALN+A V+ R+++ ++ ++ K K+G + +KE+L+ +L +
Sbjct: 13 WKWAFLLLLALNIAFWGVIISRVLSGYHSNTITSQTVKNPVKVGTITTTKEQLNQTLASY 72
Query: 63 AQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGT 122
DY + M + V++T++ I F+ +YK+LG+ VPLY+YF P +SGAV L+V+ S G
Sbjct: 73 LNDYQSKGMTYSVQLTSTNIEFQGTYKLLGYNVPLYIYFEPYQLKSGAVQLKVTSFSVGN 132
Query: 123 LKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEF 182
L LP + L+ IK S KLP+++ + +K V +N+Q + ND GI ++ + +LV+D I F
Sbjct: 133 LPLPASEVLSYIKSSYKLPNFVDVIPEKSVVNINLQKIDNDAGIYLKSTAINLVSDEINF 192
Query: 183 DIYK 186
DI K
Sbjct: 193 DILK 196
>gi|146319302|ref|YP_001199014.1| hypothetical protein SSU05_1648 [Streptococcus suis 05ZYH33]
gi|145690108|gb|ABP90614.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
05ZYH33]
Length = 198
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 118/185 (63%), Gaps = 2/185 (1%)
Query: 4 VWKWLFLGLLALNLALISVVTVRIMTPVE--TSPVSLPKGATKIGKYSMSKEELDASLRG 61
+WKWLFL L+L + V+ RI T E T V TK+G +S ++E+L+ +L
Sbjct: 11 IWKWLFLAQLSLLIGCGIVLYTRIQTDREDLTKLVQTSTEDTKVGTFSTNREQLNQTLTN 70
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ ++Y T++ +++ VT+ ++VFE SY++ G +PLY+YF P E G+++L+++E+S G
Sbjct: 71 YLKEYQTEEFSYQLFVTSQQVVFEGSYQIFGVTIPLYIYFQPSKMEDGSILLRITEISVG 130
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
+L LP + L ++++ KLP ++ IDS++ +V + + +KN G+ +A + DL ND+
Sbjct: 131 SLSLPKAEVLAYLQKNYKLPAFVKIDSEQAQVQVQLTELKNKFGLYGKANTIDLYNDQFI 190
Query: 182 FDIYK 186
DIY+
Sbjct: 191 VDIYR 195
>gi|76799719|ref|ZP_00781815.1| YfaA [Streptococcus agalactiae 18RS21]
gi|76584930|gb|EAO61592.1| YfaA [Streptococcus agalactiae 18RS21]
Length = 171
Score = 122 bits (306), Expect = 9e-27, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 94/143 (65%)
Query: 44 KIGKYSMSKEELDASLRGFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTP 103
K+G ++ +K +L+ ++ + + Y T KM +K+ +S I+FE SY++LG+ VPLY+YF P
Sbjct: 26 KVGTFTTNKSQLNKTIALYLKQYQTKKMNYKIYAASSSILFEGSYQLLGYEVPLYIYFEP 85
Query: 104 LVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKND 163
+GAV L+V+ S GTL LP D L IK S KLP+++ I KK + +N+Q +KN
Sbjct: 86 YRLTNGAVQLKVTSFSVGTLPLPEKDVLQYIKSSYKLPNFVDIKPKKSVININLQDLKNK 145
Query: 164 KGITARAQSFDLVNDRIEFDIYK 186
+GI +A + DLVND FDI+K
Sbjct: 146 EGIYLKATAIDLVNDNFSFDIFK 168
>gi|116511327|ref|YP_808543.1| hypothetical protein LACR_0524 [Lactococcus lactis subsp. cremoris
SK11]
gi|116106981|gb|ABJ72121.1| hypothetical protein LACR_0524 [Lactococcus lactis subsp. cremoris
SK11]
Length = 218
Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 2 SKVWKWLFLGLLALNLALISVVTVRIMTPVETSPV---SLPKGATKIGKYSMSKEELDAS 58
S +WKWLFL LLA+NLA I V +R+ TP + + + S+ K+ + S + +L+
Sbjct: 30 SAIWKWLFLVLLAINLAGIVFVAIRVTTPRDQTVLNQKSVSSSDQKVAQISSTTSQLNEL 89
Query: 59 LRGFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSEL 118
+ + + Y T +M +K ++N + V E+SYK+ G +PLY+YF PL G++ L V +
Sbjct: 90 INSYLETYQTKEMTYKFYISNQQAVLEASYKLFGTKIPLYIYFEPLALSDGSISLSVQNI 149
Query: 119 SAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVND 178
SAG+L LP + L ++K + LPD++ ++SKK ++++N+ +K + + DLV
Sbjct: 150 SAGSLSLPTSEVLQIVK-AYDLPDFVQVESKKNQIVINLPKIKLASNLYIKVNQIDLVKG 208
Query: 179 RIEFDIYK 186
FD K
Sbjct: 209 NFIFDFMK 216
>gi|15672483|ref|NP_266657.1| hypothetical protein L101577 [Lactococcus lactis subsp. lactis
Il1403]
gi|12723383|gb|AAK04599.1|AE006285_7 hypothetical protein [Lactococcus lactis subsp. lactis Il1403]
gi|12830850|gb|AAK08221.1|AF320916_2 YfaA [Lactococcus lactis]
Length = 218
Score = 116 bits (290), Expect = 7e-25, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Query: 4 VWKWLFLGLLALNLALISVVTVRIMTPVETSPV---SLPKGATKIGKYSMSKEELDASLR 60
+WKWLF+ LLALN+A + + +R+ +P + + + S K+ + + + +L+ +
Sbjct: 32 IWKWLFIILLALNIAGVVFIAIRVTSPRDQTVLNQKSTNSSDQKVAQITSTTSQLNELIN 91
Query: 61 GFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ + Y T +M +K ++N + V E+SYK+ G +PLY+YF PL G++ L V +SA
Sbjct: 92 SYLETYQTKEMTYKFYISNQQAVLEASYKLFGTKIPLYIYFEPLALSDGSISLSVQNISA 151
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
G+L LP + L ++K + LPD++ ++SKK +V++N+ + + +A DL
Sbjct: 152 GSLSLPTSEVLQIVK-AYDLPDFVQVESKKNQVVINLSKINVSGNLYIKANQIDLAKGNF 210
Query: 181 EFDIYK 186
FD K
Sbjct: 211 VFDFMK 216
>gi|125623362|ref|YP_001031845.1| hypothetical protein llmg_0495 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492170|emb|CAL97099.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
Length = 218
Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 2 SKVWKWLFLGLLALNLALISVVTVRIMTPVETSPV---SLPKGATKIGKYSMSKEELDAS 58
S +WKWLFL LLALNLA I V +R+ TP + + + S+ K+ + S + +L+
Sbjct: 30 SAIWKWLFLVLLALNLAGIVFVAIRVTTPRDQTVLNQKSVSNSDQKVAQISSTTSQLNEL 89
Query: 59 LRGFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSEL 118
+ + + Y T +M +K ++N + V E+SYK+ G +PLY+YF PL G++ L V +
Sbjct: 90 INSYLETYQTKEMTYKFYISNQQAVLEASYKLFGTKIPLYIYFEPLALSDGSISLSVQNI 149
Query: 119 SAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVND 178
SAG+L LP + L ++K + LPD++ ++SKK ++++N+ +K + + DLV
Sbjct: 150 SAGSLSLPTSEVLQIVK-AYDLPDFVQVESKKNQIVINLPKIKLASNLYIKVNQIDLVKG 208
Query: 179 RIEFDIYK 186
FD K
Sbjct: 209 NFIFDFMK 216
>gi|69246750|ref|ZP_00604098.1| conserved hypothetical protein [Enterococcus faecium DO]
gi|68195104|gb|EAN09564.1| conserved hypothetical protein [Enterococcus faecium DO]
Length = 237
Score = 98.2 bits (243), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 6/186 (3%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMS----KEELDASLR 60
WK+ FL LL + L + RI E +P + G ++ KE+++ +
Sbjct: 18 WKFAFLILLGVVLGSTVFLGSRIFANREPELPEIPALTERQGDPVLTINSNKEKVNQIIS 77
Query: 61 GFAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
F +Y D + +K + N ++ +++VLG + Y+YF P V E+G V L+ LS
Sbjct: 78 FFLSEYQKDSDIEYKFYLENEALL-NGTFEVLGFPIDFYLYFDPYVMENGNVQLKARSLS 136
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
GTL LPI D +NMIKR+ KLPD+I +++ ++L + + G+ +A DLVND
Sbjct: 137 IGTLSLPIKDVMNMIKRNYKLPDWIEVNTDDLTIMLRLDQFRMQNGMYIKADKIDLVNDD 196
Query: 180 IEFDIY 185
I F +Y
Sbjct: 197 IRFSLY 202
>gi|29376236|ref|NP_815390.1| hypothetical protein EF1682 [Enterococcus faecalis V583]
gi|29343699|gb|AAO81460.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 214
Score = 90.5 bits (223), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 6/186 (3%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMS----KEELDASLR 60
WK FL L+ L + ++ VT R E +P K G+ ++ K++++ +
Sbjct: 25 WKIAFLVLVGLIIGSVAFVTFRATQVREPDLKKIPAIVEKEGEPVVTIQSKKQQVNKLID 84
Query: 61 GFAQDYST-DKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
+ D+ ++++K + N ++ +++VLGH +P Y+YF P V +G V L+ LS
Sbjct: 85 FYLADFQKGSEIKYKFYLENDALL-NGTFQVLGHDIPFYLYFDPYVMANGNVQLKAKSLS 143
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
GTL LPI + L KRS KLP ++ I+ V+L + + G+ RA+ +LV+D
Sbjct: 144 IGTLGLPIKEVLKFAKRSYKLPKWVEINPDDQTVLLRLDQFRMQNGLFVRAEKINLVDDD 203
Query: 180 IEFDIY 185
I +IY
Sbjct: 204 IRMNIY 209
>gi|116494878|ref|YP_806612.1| hypothetical protein LSEI_1392 [Lactobacillus casei ATCC 334]
gi|116105028|gb|ABJ70170.1| hypothetical protein LSEI_1392 [Lactobacillus casei ATCC 334]
Length = 209
Score = 89.7 bits (221), Expect = 8e-17, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 3/184 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATK--IGKYSMSKEELDASLRGF 62
WKW FL L+ L L T ++ PV + + K + + ++K + + +
Sbjct: 21 WKWAFLILIGLILGSGIWFTKTVLAPVSLNTATETKTISNDPVFTVKVTKSSANRIMAHY 80
Query: 63 AQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ Y D +++ V + N++ S+K LG+ V + F PLV ++G V+L+ +L+ G
Sbjct: 81 LKTYLKDSPIKYAVTLGNNEAALNGSFKFLGNNVKFQLTFDPLVLKNGDVLLKSKKLNVG 140
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL +PI ++ I S K+P ++ +DSK G V+L + K G+T RA D ND +E
Sbjct: 141 TLPVPISFVMSYIGHSYKIPSWVSLDSKAGNVVLKLSQFKLQNGMTLRATKLDPTNDDLE 200
Query: 182 FDIY 185
F +Y
Sbjct: 201 FAVY 204
>gi|81428608|ref|YP_395608.1| Hypothetical extracellular protein precursor [Lactobacillus sakei
subsp. sakei 23K]
gi|78610250|emb|CAI55299.1| Hypothetical extracellular protein precursor [Lactobacillus sakei
subsp. sakei 23K]
Length = 209
Score = 82.8 bits (203), Expect = 9e-15, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPK--GATKIGKYSMSKEELDASLRGF 62
WK+ F+ LLAL + + + + P +T V K A M K+++++ + +
Sbjct: 21 WKYSFIVLLALVIGTLGFIAYNVSAP-QTKQVQTEKMIKADSTFDIQMHKKQINSVVAYY 79
Query: 63 AQDY-STDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
++Y K+++ + + + + +K LG V ++F P V E+G + L+ +L+ G
Sbjct: 80 LENYLENSKVKYNFTL-DQQAILSGQFKFLGFPVEFNLFFKPYVLENGDIQLRAKQLAVG 138
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
LK+P+ N I+R K P ++V+++ K ++ L + K G+ +A+ DL ND+I+
Sbjct: 139 QLKVPMSFVFNYIQRQYKFPKWVVLNAHKSRITLRLNEFKLANGMQVKARHIDLKNDKID 198
Query: 182 FDIY 185
+Y
Sbjct: 199 LSVY 202
>gi|46908093|ref|YP_014482.1| hypothetical protein LMOf2365_1889 [Listeria monocytogenes str. 4b
F2365]
gi|153167704|ref|ZP_01927808.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|46881363|gb|AAT04659.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
F2365]
gi|133726803|gb|EBA28501.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
Length = 204
Score = 80.1 bits (196), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 5 WKWL---FLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW+ + +L ++ I V ++ E SP + + + S +K +L+ +
Sbjct: 17 WKWVCITLISVLLISAGWIYVAVFKLSPQDEPSPSLISNKSMVEFQTSTTKADLNQLISS 76
Query: 62 FAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ +D+S D+ + +KV V N+ + F + ++ G V L + F+P V ++G V L + ++S
Sbjct: 77 YIEDFSKDQDIGYKVFVANN-VNFTAEAEIFGEPVELRLKFSPEVVDNGNVELTLKDMSV 135
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
G L LP+ +N + ++ K PD++ I KK K+ L++ +K G RA + +L D I
Sbjct: 136 GALPLPVSYVMNYVSKNYKFPDWVTIMPKKEKIYLSLDKLKLQGGTKVRADTLNLKKDDI 195
Query: 181 EFDI 184
F +
Sbjct: 196 SFTL 199
>gi|47093244|ref|ZP_00231016.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|153202856|ref|ZP_01944294.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|47018376|gb|EAL09137.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|133734926|gb|EBA36624.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
Length = 204
Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 5 WKWL---FLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW+ + +L ++ I V ++ E +P + + + S +K +L+ +
Sbjct: 17 WKWVCITLISVLLISAGWIYVAVFKLSPQDEPTPSLISNKSMVEFQTSTTKADLNQLISS 76
Query: 62 FAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ +D+S D+ + +KV V N+ + F + ++ G V L + F+P V ++G V L + ++S
Sbjct: 77 YIEDFSKDQDIGYKVFVANN-VNFTAEAEIFGEPVELRLKFSPEVVDNGNVELTLKDMSV 135
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
G L LP+ +N + ++ K PD++ I KK K+ L++ +K G RA + +L D I
Sbjct: 136 GALPLPVSYVMNYVSKNYKFPDWVTIMPKKEKIYLSLDKLKLQGGTKVRADTLNLKKDDI 195
Query: 181 EFDI 184
F +
Sbjct: 196 SFTL 199
>gi|154686420|ref|YP_001421581.1| YpmS [Bacillus amyloliquefaciens FZB42]
gi|154352271|gb|ABS74350.1| YpmS [Bacillus amyloliquefaciens FZB42]
Length = 187
Score = 79.0 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 1/183 (0%)
Query: 3 KVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGF 62
K WK LF LLALN+ +V+ ++ P E + + + + SKE L + +
Sbjct: 2 KKWKSLFFVLLALNVIAAAVIVTLLVMPGEQAKIQDQTKSEYGFHITSSKESLARFVNAY 61
Query: 63 AQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGT 122
++ +++++ +KV + N+ + K ++ V F P V E+G V+L+V++ S G
Sbjct: 62 LKEKASNQLDYKVDI-NNDVHVAGKIKAFSTSINAVVTFEPSVQENGDVMLKVTKFSLGE 120
Query: 123 LKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEF 182
L LPI LN + +LP ++ + S + + + M D G+ +A +L D IEF
Sbjct: 121 LSLPISFVLNYMDSFYELPSFVHVHSGDKSIEIRLSEMPLDNGMYVKADKINLDTDEIEF 180
Query: 183 DIY 185
Y
Sbjct: 181 SYY 183
>gi|16803901|ref|NP_465386.1| hypothetical protein lmo1861 [Listeria monocytogenes EGD-e]
gi|153175090|ref|ZP_01930485.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|16411315|emb|CAC99939.1| lmo1861 [Listeria monocytogenes]
gi|133729543|gb|EBA31241.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
Length = 204
Score = 76.6 bits (187), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
Query: 5 WKWL---FLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW+ + +L ++ I V ++ E +P + + + S +K +L+ +
Sbjct: 17 WKWVCITLISVLLISAGWIYVAVFKLSPQDEPTPSLISNKSMVEFQTSTTKADLNQLISS 76
Query: 62 FAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ +D+S D+ + +KV V N+ + F + ++ G V L + F+P V ++G V L + ++S
Sbjct: 77 YIEDFSKDQDIGYKVFVANN-VNFTAEAEIFGEPVELRLKFSPEVVDNGNVELTLKDMSV 135
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
G L LP+ +N + ++ K PD++ I KK K+ L++ +K RA + +L D I
Sbjct: 136 GALPLPVSYVMNYVSKNYKFPDWVTIMPKKEKIYLSLDKLKLQGDTKVRADTLNLKKDDI 195
Query: 181 EFDI 184
F +
Sbjct: 196 SFTL 199
>gi|146321505|ref|YP_001201216.1| hypothetical protein SSU98_1658 [Streptococcus suis 98HAH33]
gi|145692311|gb|ABP92816.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
98HAH33]
Length = 97
Score = 75.1 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 61/92 (66%)
Query: 95 VPLYVYFTPLVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVI 154
+PLY+YF P E G+++L+++E+S G+L LP + L ++++ KLP ++ IDS++ +V
Sbjct: 3 IPLYIYFQPSKMEDGSILLRITEISVGSLSLPKAEVLAYLQKNYKLPAFVKIDSEQAQVQ 62
Query: 155 LNIQSMKNDKGITARAQSFDLVNDRIEFDIYK 186
+ + +KN G+ +A + DL D+ DIY+
Sbjct: 63 VQLTELKNKFGLYGKANTIDLYTDQFIVDIYR 94
>gi|47096903|ref|ZP_00234481.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|153179891|ref|ZP_01933064.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|153183349|ref|ZP_01934209.1| conserved hypothetical protein [Listeria monocytogenes J0161]
gi|47014716|gb|EAL05671.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|126943640|gb|EBA21357.1| conserved hypothetical protein [Listeria monocytogenes J0161]
gi|133732535|gb|EBA34233.1| conserved hypothetical protein [Listeria monocytogenes F6900]
Length = 204
Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
Query: 5 WKWL---FLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW+ + +L ++ I V ++ E +P + + + S +K +L+ +
Sbjct: 17 WKWVCITLISVLLISAGWIYVAVFKLSPQDEPTPSLISNKSMIEFQTSTTKADLNQLISS 76
Query: 62 FAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ +D+S ++ + +KV V N+ + F + ++ G V L + F+P V ++G V L + ++S
Sbjct: 77 YIEDFSKEQDIGYKVFVANN-VNFTAEAEIFGEPVELRLKFSPEVVDNGNVELTLKDMSV 135
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
G L LP+ +N + ++ K PD++ I KK K+ L++ +K RA + +L D I
Sbjct: 136 GALPLPVSYVMNYVSKNYKFPDWVTIMPKKEKIYLSLDKLKLQGDTKVRADTLNLKKDDI 195
Query: 181 EFDI 184
F +
Sbjct: 196 SFTL 199
>gi|153196368|ref|ZP_01940738.1| conserved hypothetical protein [Listeria monocytogenes 10403S]
gi|127633829|gb|EBA23221.1| conserved hypothetical protein [Listeria monocytogenes 10403S]
Length = 204
Score = 74.3 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
Query: 5 WKW---LFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRG 61
WKW + + +L ++ I V ++ E +P + + + S +K +L+ +
Sbjct: 17 WKWVCIILISVLLISSGWIYVAVFKLSPQDEPTPSLISNKSMVEFQTSTTKADLNQLISS 76
Query: 62 FAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ +D+S ++ + +KV V N+ + F + ++ G V L + F+P V ++G V L + ++S
Sbjct: 77 YIEDFSKEQDIGYKVFVANN-VNFTAEAEIFGEPVELRLKFSPEVVDNGNVELTLKDMSV 135
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
G L LP+ +N + ++ K PD++ I KK K+ L++ +K RA + +L D I
Sbjct: 136 GALPLPVSYVMNYVSKNYKFPDWVTIMPKKEKIYLSLDKLKLQGDTKVRADTLNLKKDDI 195
Query: 181 EFDI 184
F +
Sbjct: 196 SFTL 199
>gi|116333436|ref|YP_794963.1| hypothetical protein LVIS_0789 [Lactobacillus brevis ATCC 367]
gi|116098783|gb|ABJ63932.1| hypothetical protein LVIS_0789 [Lactobacillus brevis ATCC 367]
Length = 199
Score = 73.9 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVE-TSPVSLPKGATKIGKYSMSKEELDASLRGFA 63
WKW F+ L+A+ L V+V+ TP + TS + G T I +++K++++A +
Sbjct: 14 WKWGFIALVAVLLVTTVTVSVKAFTPTKVTSTAKVATGTTNI-DVALNKKQVNALADYYV 72
Query: 64 QDY---STDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
ST K RF+V + + + S +VLG +V + F P V SG V L+ +LS
Sbjct: 73 NKSLKNSTMKYRFQV---SDQAMLTGSTQVLGASVNFVLLFKPTVLPSGDVQLKAQKLSI 129
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVND 178
G+L +PI +N I ++ LP+++ +++ + L++ ++ N K ++ A+ DL D
Sbjct: 130 GSLPVPISFVMNYIAKNYPLPNWVAMNTADKTMTLHLTAIGNGKKLSFAAKKIDLSGD 187
>gi|16079232|ref|NP_390056.1| hypothetical protein BSU21730 [Bacillus subtilis subsp. subtilis
str. 168]
gi|1730939|sp|P54179|YPMS_BACSU Uncharacterized protein ypmS
gi|1256649|gb|AAA96643.1| putative [Bacillus subtilis]
gi|2634593|emb|CAB14091.1| ypmS [Bacillus subtilis subsp. subtilis str. 168]
Length = 187
Score = 72.4 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 1/181 (0%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGFAQ 64
WK LF LLA+N L + ++ P E + V + + + +KE L A + +
Sbjct: 4 WKRLFFILLAINFILAAGFVALVLLPGEQAQVKDASESEYGFQVTSTKESLAAFVNSYLN 63
Query: 65 DYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLK 124
D +++K+ +KV++ + + K ++ ++ F P V ++G V L V++ S G L
Sbjct: 64 DKASNKLDYKVEI-DDDVHVAGKIKAFSTSIDAFIAFEPTVKKNGDVELNVTKFSLGKLS 122
Query: 125 LPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEFDI 184
+PI LN + +LP ++ + + + + M G+ +A +L D IEF
Sbjct: 123 IPISFVLNYMDSFYELPSFVHVHPGDKSIEVRLSEMPLTNGMYVKADKINLEKDEIEFSY 182
Query: 185 Y 185
Y
Sbjct: 183 Y 183
>gi|77412648|ref|ZP_00788921.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
gi|77161299|gb|EAO72337.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
Length = 110
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGA---TKIGKYSMSKEELDASLRG 61
WKW FL LLA+NL+ +V+ R++ E + + G K+G ++ +K +L+ ++
Sbjct: 13 WKWAFLLLLAINLSFTAVIASRLIQVREPNTGKISTGVQDKVKVGTFTTNKSQLNKTIAL 72
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYV 99
+ + Y T KM +K+ +S I+FE SY++LG+ VPLY+
Sbjct: 73 YLKQYQTKKMNYKIYAASSSILFEGSYQLLGYEVPLYI 110
>gi|52080681|ref|YP_079472.1| conserved protein YpmS [Bacillus licheniformis ATCC 14580]
gi|52786054|ref|YP_091883.1| YpmS [Bacillus licheniformis ATCC 14580]
gi|52003892|gb|AAU23834.1| conserved protein YpmS [Bacillus licheniformis ATCC 14580]
gi|52348556|gb|AAU41190.1| YpmS [Bacillus licheniformis DSM 13]
Length = 190
Score = 71.6 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 1/184 (0%)
Query: 3 KVWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGF 62
K WK LFL L A+N+ +++ + + I P P + + +K+ L A + +
Sbjct: 2 KKWKSLFLILAAVNVMILAGIFILISLPGGQKEPPRPTPSEYQLNVTSTKDSLAAFINTY 61
Query: 63 AQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGT 122
+ S+ + +++++ + + + + V V F P V ++G VVL V+ S G
Sbjct: 62 LEKESSPDLDYQIEI-DDEFHIVGAIRAFSSTVDARVSFRPTVEKNGDVVLDVTRFSIGK 120
Query: 123 LKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEF 182
L +PI LN + + LPD++ + S ++ + + M G+ +A+ DL D+IEF
Sbjct: 121 LNVPISMVLNYMDQFYDLPDFVHVRSDAKEIQVRLSEMPLKNGMYVKAKDIDLEKDQIEF 180
Query: 183 DIYK 186
YK
Sbjct: 181 VYYK 184
>gi|16801041|ref|NP_471309.1| hypothetical protein lin1975 [Listeria innocua Clip11262]
gi|16414476|emb|CAC97205.1| lin1975 [Listeria innocua]
Length = 204
Score = 71.6 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 23 VTVRIMTPVETSPVSLPKGATKIG-KYSMSKEELDASLRGFAQDYSTDK-MRFKVKVTNS 80
VTV +++P E SL + I + S +K +L+ + + +++S ++ + +KV V N+
Sbjct: 37 VTVFVLSPQEEPTPSLISNKSNIEFQTSTTKSDLNQLISSYIEEFSKEQDIGYKVFVANN 96
Query: 81 KIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKL 140
+ F + K+ G V L + F+P V ++G + L ++++S G L LP+ +N + ++ K
Sbjct: 97 -VNFTAEAKIFGEPVELRLKFSPKVVDNGNIELSLTDMSVGALPLPVSYVMNYVNKNYKF 155
Query: 141 PDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEFDI 184
P+++ + KK K+ L++ +K RA + +L D I F +
Sbjct: 156 PEWVTVLPKKEKIYLSLDKLKLKGDTKVRADTLNLKKDDISFTL 199
>gi|116873296|ref|YP_850077.1| hypothetical protein lwe1880 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742174|emb|CAK21298.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 204
Score = 70.5 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 23 VTVRIMTPVETSPVSLPKGATKIG-KYSMSKEELDASLRGFAQDYSTDK-MRFKVKVTNS 80
V V I++P + SL + + + S +K +L+ + + +D+S D+ + +KV V N+
Sbjct: 37 VAVFILSPQQEPTPSLISNKSAVEFQTSTTKSDLNQLISTYIEDFSKDQDIGYKVFVANN 96
Query: 81 KIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKL 140
+ F + K+ V L++ F+P V ++G V L + ++S G L LP+ +N + ++ K
Sbjct: 97 -VNFTAEAKIFDQPVELHLKFSPKVVDNGNVELTLKDMSVGALPLPVSYVMNYVSKNYKF 155
Query: 141 PDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEFDIYKTIN 189
P+++ I KK K+ L++ +K R + +L D I F + +N
Sbjct: 156 PNWVTIIPKKEKIYLSLDKLKLKGDTKVRVDTLNLKKDDISFTLLVPVN 204
>gi|15613744|ref|NP_242047.1| hypothetical protein BH1181 [Bacillus halodurans C-125]
gi|10173797|dbj|BAB04900.1| BH1181 [Bacillus halodurans C-125]
Length = 199
Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 69/112 (61%)
Query: 73 FKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLKLPILDALN 132
++V +T+ + F ++ ++LG P+ + P V+++G +VL+V S G ++LPI L
Sbjct: 84 YRVVLTDEHVEFHANMQLLGFQAPIIIQLLPTVAQNGDLVLEVDSFSLGGIQLPIEHILQ 143
Query: 133 MIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEFDI 184
+ + +P+++V K+ V+ I +++ D+ ++ R ++FDL +D+IE ++
Sbjct: 144 WMSQMEDIPEWVVFYPKERLVVAEITTLQVDERLSFRFRTFDLYSDQIEAEM 195
>gi|56420303|ref|YP_147621.1| hypothetical protein GK1768 [Geobacillus kaustophilus HTA426]
gi|56380145|dbj|BAD76053.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 191
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGK----YSMSKEELDASLR 60
WK F L A+N A++ + P TSPV P G YS KE L+A +
Sbjct: 3 WKRAFWMLAAVNAAVLVWTVAWLFEP--TSPVKRPARPNVEGASFTVYS-KKEHLNAVMN 59
Query: 61 GF-AQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
+ A+ ++++V + + ++ S +LG +V L V F P V + G V L +S
Sbjct: 60 DYLAEKTKGHPLQYRVWLAD-RVYVSSEIPILGRSVELVVSFVPKVIKGGNVELTEPTIS 118
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
G KLP+ L +++ LPD + ID + +V + + ++ G A+ DL D
Sbjct: 119 LGDWKLPVTYVLRYLQKHAPLPDEVAIDPEHTRVYVALTDIRFGNGYQVAAKKIDLAADE 178
Query: 180 IEFDI 184
I F +
Sbjct: 179 IVFTL 183
>gi|149179678|ref|ZP_01858183.1| hypothetical protein BSG1_01645 [Bacillus sp. SG-1]
gi|148851870|gb|EDL66015.1| hypothetical protein BSG1_01645 [Bacillus sp. SG-1]
Length = 192
Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 3/183 (1%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIG---KYSMSKEELDASLRG 61
WK F LL LN+ +I V +M P+E +S + + +K++L+ +
Sbjct: 5 WKAGFFTLLGLNILVILGAAVLLMIPLEDDELSENNSEERENVAFQIRAAKDDLNQMIDH 64
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+ Q+ V N + S V + + F E+G ++L+ + +S G
Sbjct: 65 YIQEEGYKGPVNYSVVLNDNVELNGSVPVFTSEINFKMTFEAKALENGDLLLKQNSISVG 124
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
LKLP+ L +I+ S P+++ I + +++Q+++ + RA+ FDL ND I
Sbjct: 125 ALKLPVSHVLKIIRDSYNFPEWVKIQPNDELIYVSLQNLEMKSDLQVRAEKFDLKNDDIV 184
Query: 182 FDI 184
F++
Sbjct: 185 FNM 187
>gi|28378521|ref|NP_785413.1| hypothetical protein lp_1866 [Lactobacillus plantarum WCFS1]
gi|28271357|emb|CAD64262.1| unknown [Lactobacillus plantarum WCFS1]
Length = 214
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 94/185 (50%), Gaps = 3/185 (1%)
Query: 4 VWKWLFLGLLALNLALISVVTVRIM-TPVETSPVSLPKGATKIG-KYSMSKEELDASLRG 61
VWKW+ + L+AL + + V +++ +P E++ ++ +M++++L+A
Sbjct: 24 VWKWVAVVLIALIVGTGAYVGTQVLRSPSESTSLTAASNTDAASVPITMNRKQLNALASY 83
Query: 62 FAQDYSTDK-MRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSA 120
+ D + M+++ V ++ + +VLG V + P V ++G + L+ + LS
Sbjct: 84 YLNDLQKGQDMKYRFVVRSTGAYLLGTTQVLGQNVSFVITMQPSVIDNGNISLKATNLSV 143
Query: 121 GTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRI 180
GT+ LPI +N I + K P ++ +++KK + L + + + DL N++
Sbjct: 144 GTMSLPISFVINYINNNYKTPKWVKLNAKKKTIDLYLNKLVGKHDVRYSVDKLDLKNNQF 203
Query: 181 EFDIY 185
+F+++
Sbjct: 204 KFEMH 208
>gi|124522930|ref|ZP_01697307.1| conserved hypothetical protein [Bacillus coagulans 36D1]
gi|124495797|gb|EAY43448.1| conserved hypothetical protein [Bacillus coagulans 36D1]
Length = 185
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 4/180 (2%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGFAQ 64
WK F L ++ +A + V++ + P P G T + +K +L A + + +
Sbjct: 6 WKIAFFALASVVVAFVLVLSFFLFVPDGRVPEPEKTGKTVDLRVETNKADLTALINRYLR 65
Query: 65 DYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLK 124
+ +K++ KV N ++V+ + V + + F P ++G +VL+ +S G++
Sbjct: 66 E---EKIKGKV-FLNDEVVYYGTVGVFSEKMQYKMTFKPKALKNGDLVLKQKSVSLGSIH 121
Query: 125 LPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIEFDI 184
LP+ L +K + LP +++I + V + +Q+MK + G + FDL +D I F +
Sbjct: 122 LPVSYILQFVKTTYHLPKWVIIQPGEKLVYVQLQNMKLENGAKVKVNEFDLQHDDISFTL 181
>gi|116617873|ref|YP_818244.1| hypothetical protein LEUM_0762 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096720|gb|ABJ61871.1| hypothetical protein LEUM_0762 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 204
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 88/185 (47%), Gaps = 14/185 (7%)
Query: 4 VWKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGK------YSMSKEELDA 57
+W WLF GL++ I +V + + PV + +KI K S++K++++A
Sbjct: 19 IWFWLFWGLIS-----ILLVGGIWLFNEASGPVKIKDNVSKISKSDATFDVSLNKKQINA 73
Query: 58 SLRGFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSE 117
+ + D FK+ ++ S K+LG + ++ +G +V+Q
Sbjct: 74 LVAHYLNDTDNSGYTFKI---GDDVMMYGSAKLLGQKFNFGMALDAKLTPNGNIVMQAKS 130
Query: 118 LSAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVN 177
L+ G L LPI ++ ++ S P+Y+ I KK ++ +++ + +GI +A+ ++
Sbjct: 131 LAIGNLSLPIKTVMSYVRSSYDAPEYVTIVPKKKQIFIDMSKLPTTQGIKFKAKVINIKA 190
Query: 178 DRIEF 182
D+ F
Sbjct: 191 DQFVF 195
>gi|138895320|ref|YP_001125773.1| hypothetical protein GTNG_1664 [Geobacillus thermodenitrificans
NG80-2]
gi|134266833|gb|ABO67028.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 191
Score = 60.8 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGFAQ 64
WK F L A+N A++ V V + P SP + S + A L
Sbjct: 4 WKRAFWILAAVNAAILIFVAVWLFQP---SPQVKRPMRPHVEGASFTVYSKKAHLNAVIN 60
Query: 65 DYSTDKMR-----FKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
DY +KM+ + V + + ++ S + G V L V F P V + G V L +S
Sbjct: 61 DYLAEKMKDHPLQYDVWLAD-RVYVSSEIPIFGRDVELVVSFMPKVVKGGNVELAEPTIS 119
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
KLP+ L +++ LPD +V+D + +V + + ++ G A+ DL D
Sbjct: 120 LDDWKLPVTYVLRYLQKHAPLPDEVVVDPDRARVYVALDDIRFGNGYQVAAKKIDLAADE 179
Query: 180 IEFDI 184
I F +
Sbjct: 180 IVFTL 184
>gi|118586883|ref|ZP_01544317.1| hypothetical protein OENOO_56054 [Oenococcus oeni ATCC BAA-1163]
gi|118432715|gb|EAV39447.1| hypothetical protein OENOO_56054 [Oenococcus oeni ATCC BAA-1163]
Length = 194
Score = 59.7 bits (143), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 89 KVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKLPDYIVIDS 148
K LG + + V F P V+++G V+L+ +L AG++ LPI ++ IK +T LP +I IDS
Sbjct: 96 KFLGSKLNVGVVFDPSVTKNGNVLLKAKKLVAGSMPLPIGTVMSYIKATTDLPSFIGIDS 155
Query: 149 KKGKVILNIQSMKNDKGITARAQSFDLVNDRIEF 182
K + +N+ MK K + +A++ +L ++I F
Sbjct: 156 SKKDISINLAKMKTGKLLAFKAKTINLPENKIIF 189
>gi|116491046|ref|YP_810590.1| hypothetical protein OEOE_1016 [Oenococcus oeni PSU-1]
gi|116091771|gb|ABJ56925.1| hypothetical protein OEOE_1016 [Oenococcus oeni PSU-1]
Length = 194
Score = 59.7 bits (143), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 89 KVLGHAVPLYVYFTPLVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKLPDYIVIDS 148
K LG + + V F P V+++G V+L+ +L AG++ LPI ++ IK +T LP +I IDS
Sbjct: 96 KFLGSKLNVGVIFDPSVTKNGNVLLKAKKLVAGSMPLPIGTVMSYIKATTDLPSFIGIDS 155
Query: 149 KKGKVILNIQSMKNDKGITARAQSFDLVNDRIEF 182
K + +N+ MK K + +A++ +L ++I F
Sbjct: 156 SKKDISINLAKMKTGKLLAFKAKTINLPENKIIF 189
>gi|116492827|ref|YP_804562.1| hypothetical protein PEPE_1064 [Pediococcus pentosaceus ATCC 25745]
gi|116102977|gb|ABJ68120.1| hypothetical protein PEPE_1064 [Pediococcus pentosaceus ATCC 25745]
Length = 196
Score = 57.8 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 86/183 (46%), Gaps = 5/183 (2%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKY--SMSKEEL-DASLRG 61
WKW FL LL++ LA VT + P++ + + + + + K ++ D S
Sbjct: 9 WKWGFLVLLSIFLAGGIYVTFKASRPIQQVDDQVVRSSNHYDRIPIKLKKNQINDLSAAY 68
Query: 62 FAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELSAG 121
+Q + ++ K+ + ++LG + + + P V++SG + L+ L+ G
Sbjct: 69 LSQFQKDEDFNYEFKIGQRYAILSGETEILGKKIQIALTMIPKVTKSGNIKLKAHGLTVG 128
Query: 122 TLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDRIE 181
TL L L I R+ +LP ++ ID + +L + +K ++ +A++ D+ + +
Sbjct: 129 TLNLSAKIVLKYISRNYQLPKWVSIDGDEA--LLRLNQIKTTNKVSFQAKTIDIDKNDFQ 186
Query: 182 FDI 184
F I
Sbjct: 187 FII 189
>gi|12830845|gb|AAK08217.1|AF320915_1 YfaA [Lactococcus lactis]
Length = 89
Score = 56.6 bits (135), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 99 VYFTPLVSESGAVVLQVSELSAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQ 158
+YF PL G++ L V +SAG+L LP + L ++K + LPD++ ++SKK ++++N+
Sbjct: 1 IYFEPLALSDGSISLSVQNISAGSLSLPTSEVLQIVK-AYDLPDFVQVESKKNQIVINLP 59
Query: 159 SMKNDKGITARAQSFDLVNDRIEFDIYK 186
+K + + DLV FD K
Sbjct: 60 KIKLASNLYIKVNQIDLVKGNFIFDFMK 87
>gi|92089909|ref|ZP_01274830.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
gi|91803316|gb|EAS88194.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
Length = 200
Score = 56.6 bits (135), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGFAQ 64
WKW F L+AL + VV + P + S A K S++ E + A
Sbjct: 12 WKWAFFCLVALIVISCGVVVNKATAPTPATTTS---KAVKPSDSSVTVELNKKQVNALAA 68
Query: 65 DY-----STDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
+Y K+R+ V + + K LG V + F P +G V+L+ LS
Sbjct: 69 NYLNQFLKGQKIRYDFIVGDQYATLTGNTKFLGAKVRFAINFIPERLNNGNVLLRAKGLS 128
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
G L +PI + I ++ +P ++ I+ +K V+L++ + + AQ ++ R
Sbjct: 129 VGRLNIPIKFVMGYIAKNYNIPKWVTINPQKKTVLLDLNRYSKHRSLKYSAQEINMQEGR 188
Query: 180 IEFDI 184
+F I
Sbjct: 189 FKFLI 193
>gi|148544005|ref|YP_001271375.1| hypothetical protein Lreu_0774 [Lactobacillus reuteri F275]
gi|148531039|gb|ABQ83038.1| Uncharacterized protein [Lactobacillus reuteri F275]
Length = 200
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGFAQ 64
WKW F L+AL + VV + P + S A K S++ E + A
Sbjct: 12 WKWAFFCLVALIVISCGVVLNKATAPTPATTTS---KAVKPSDSSVTVELNKKQVNALAA 68
Query: 65 DY-----STDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
+Y K+R+ V + + K LG V + F P +G V+L+ LS
Sbjct: 69 NYLNQFLKGQKIRYDFIVGDQYATLTGNTKFLGAKVRFAINFIPERLSNGNVLLRAKGLS 128
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
G L +PI + I ++ +P ++ I+ +K V+L++ + + AQ ++ R
Sbjct: 129 VGRLNIPIKFVMGYIAKNYNIPKWVTINPQKKTVLLDLNRYSKHRSLKYSAQEINMQEGR 188
Query: 180 IEFDI 184
+F I
Sbjct: 189 FKFLI 193
>gi|68160802|gb|AAY86847.1| unknown extracellular protein lr1045 [Lactobacillus reuteri]
Length = 200
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSMSKEELDASLRGFAQ 64
WKW F L+AL + VV + P + S A K S++ E + A
Sbjct: 12 WKWAFFCLVALIVISCGVVLNKATAPTPATTTS---KAVKPSDSSVTVELNKKQVNALAA 68
Query: 65 DY-----STDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
+Y K+R+ V + + K LG V + F P +G V+L+ LS
Sbjct: 69 NYLNQFLKGQKIRYDFIVGDQYATLTGNTKFLGAKVRFAINFIPERLSNGNVLLRAKGLS 128
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
G L +PI + I ++ +P ++ I+ +K V+L++ + + AQ ++ R
Sbjct: 129 VGRLNIPIKFVMGYIAKNYNIPKWVTINPQKKTVLLDLNRYSKHRSLKYSAQEINMQEGR 188
Query: 180 IEFDI 184
+F I
Sbjct: 189 FKFLI 193
>gi|89100602|ref|ZP_01173461.1| hypothetical protein B14911_22677 [Bacillus sp. NRRL B-14911]
gi|89084706|gb|EAR63848.1| hypothetical protein B14911_22677 [Bacillus sp. NRRL B-14911]
Length = 199
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSL----------------PKGATKIGKY 48
WK LF LL + +A I++ V I P + ++ + +I +
Sbjct: 12 WKVLFFLLLGIVIAFIALFFVMINLPAKDEAINTTEVDEDGYVPFHLQTNKRDLNRIIAH 71
Query: 49 SMSKEELDASLRGFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSES 108
++KE LD + DY + + ++ + V + + + F P ++
Sbjct: 72 YIAKEGLDGPI-----DYEV--------ILDDEVELYGNLPVFSQNLEMKLTFEPEALDN 118
Query: 109 GAVVLQVSELSAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITA 168
G VVL ++ G L LP+ L ++ +LP+ +VI K ++ +++Q MK +
Sbjct: 119 GDVVLSQKSIAVGQLNLPVSYVLKFVRDRYQLPEGVVIQPDKEQIYVSLQDMKLKSDLKV 178
Query: 169 RAQSFDLVNDRIEFDIY 185
+ FDL D I +Y
Sbjct: 179 KVDEFDLKKDDIRVTLY 195
>gi|90961692|ref|YP_535608.1| hypothetical protein LSL_0715 [Lactobacillus salivarius subsp.
salivarius UCC118]
gi|90820886|gb|ABD99525.1| Conserved hypothetical protein [Lactobacillus salivarius subsp.
salivarius UCC118]
Length = 199
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 8/187 (4%)
Query: 5 WKWLFLGLLAL----NLALISVVTVRIMTPVETSPVSLPKGATKIGKY--SMSKEELDAS 58
WKW F L+ + L + VT + + VS K ++ K++ +A+
Sbjct: 9 WKWAFFVLVGILFISGCYLATKVTSQTKEQTNIAKVSDKNSKQKYTSVDVTLDKKQANAT 68
Query: 59 LRGF-AQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSE 117
+ + ++ K++++ V S I+ ++ K+LG V +Y P + ++G ++L+V
Sbjct: 69 INYYLRKNQKKGKIKYRFLVDKSAIMMGTT-KILGKNVSFTLYTKPTLDKNGNILLKVKS 127
Query: 118 LSAGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVN 177
++ G+L P L +K + L +ID K + L++ + + + + DLVN
Sbjct: 128 VAIGSLNAPAGFILKYVKNNYDLGKVAIIDPKAKTITLDLNQLTKKQDVLVKGTKLDLVN 187
Query: 178 DRIEFDI 184
D +F++
Sbjct: 188 DEFKFNV 194
>gi|126650227|ref|ZP_01722455.1| hypothetical protein BB14905_17775 [Bacillus sp. B14905]
gi|126592877|gb|EAZ86859.1| hypothetical protein BB14905_17775 [Bacillus sp. B14905]
Length = 193
Score = 54.7 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 5/185 (2%)
Query: 5 WKWLFLGLLALNLALISVVTVRIMTPVETSPVSLPKGATKIGKYSM-----SKEELDASL 59
WK F L L I +V PV+ V+ K ++ + +EL++
Sbjct: 4 WKVAFFALAGTVLFAILLVVFLATRPVDGVDVAKRSAGESESKGNVLVVQTTTKELESIS 63
Query: 60 RGFAQDYSTDKMRFKVKVTNSKIVFESSYKVLGHAVPLYVYFTPLVSESGAVVLQVSELS 119
+ + +D + I S+ V +P+ + F P+V + G ++L+ + ++
Sbjct: 64 KKYLKDAAKGSPLPLDFTIGDDIQLRSTLTVFYTEIPISMNFEPIVDDKGNIILKQTGMN 123
Query: 120 AGTLKLPILDALNMIKRSTKLPDYIVIDSKKGKVILNIQSMKNDKGITARAQSFDLVNDR 179
G L +P + +++ S + P +I ++ K ++ +++ + G RA+ DL ND+
Sbjct: 124 VGLLNIPPETTMKIMRDSVEFPSWITVNPNKAEIYIDLSRINIASGSRVRAKELDLPNDK 183
Query: 180 IEFDI 184
I +I
Sbjct: 184 ILLEI 188
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,444,039
Number of Sequences: 5470121
Number of extensions: 21117748
Number of successful extensions: 64935
Number of sequences better than 1.0e-05: 50
Number of HSP's better than 0.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 64858
Number of HSP's gapped (non-prelim): 51
length of query: 189
length of database: 1,894,087,724
effective HSP length: 125
effective length of query: 64
effective length of database: 1,210,322,599
effective search space: 77460646336
effective search space used: 77460646336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)