BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF0943
(365 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34541110|ref|NP_905589.1| integrase [Porphyromonas gingi... 585 e-165
gi|60680742|ref|YP_210886.1| putative transposase [Bacteroi... 331 5e-89
gi|150005005|ref|YP_001299749.1| putative transposase [Bact... 328 3e-88
gi|53712631|ref|YP_098623.1| tyrosine type site-specific re... 312 2e-83
gi|29345486|ref|NP_808989.1| transposase [Bacteroides theta... 311 6e-83
gi|29347687|ref|NP_811190.1| transposase [Bacteroides theta... 240 1e-61
gi|156862827|gb|EDO56258.1| hypothetical protein BACUNI_000... 239 2e-61
gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC... 234 8e-60
gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis] 232 2e-59
gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides... 229 3e-58
gi|88805941|ref|ZP_01121459.1| tyrosine type site-specific ... 229 3e-58
gi|29350147|ref|NP_813650.1| transposase [Bacteroides theta... 228 4e-58
gi|150004634|ref|YP_001299378.1| transposase [Bacteroides v... 227 9e-58
gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER... 225 3e-57
gi|29346548|ref|NP_810051.1| transposase [Bacteroides theta... 225 3e-57
gi|150008853|ref|YP_001303596.1| transposase [Parabacteroid... 225 3e-57
gi|150009849|ref|YP_001304592.1| transposase [Parabacteroid... 225 4e-57
gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER... 224 5e-57
gi|53711947|ref|YP_097939.1| tyrosine type site-specific re... 224 9e-57
gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER... 223 1e-56
gi|60681592|ref|YP_211736.1| putative bacteriophage integra... 221 8e-56
gi|154495261|ref|ZP_02034266.1| hypothetical protein PARMER... 219 2e-55
gi|120435029|ref|YP_860715.1| phage integrase family protei... 218 4e-55
gi|150006208|ref|YP_001300952.1| tyrosine type site-specifi... 218 6e-55
gi|53713347|ref|YP_099339.1| tyrosine type site-specific re... 218 6e-55
gi|150007906|ref|YP_001302649.1| site-specific recombinase ... 216 1e-54
gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_033... 216 3e-54
gi|60681325|ref|YP_211469.1| putative bacteriophage integra... 215 3e-54
gi|53711443|ref|YP_097435.1| tyrosine type site-specific re... 213 1e-53
gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides ... 213 2e-53
gi|60681287|ref|YP_211431.1| putative bacteriophage integra... 208 4e-52
gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_031... 208 4e-52
gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific ... 208 5e-52
gi|53713278|ref|YP_099270.1| tyrosine type site-specific re... 204 8e-51
gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides... 203 1e-50
gi|150010411|ref|YP_001305154.1| transposase [Parabacteroid... 199 2e-49
gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC... 199 3e-49
gi|67940412|ref|ZP_00532834.1| Phage integrase [Chlorobium ... 198 5e-49
gi|67941825|ref|ZP_00533827.1| transposase [Chlorobium phae... 196 2e-48
gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER... 196 3e-48
gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER... 195 3e-48
gi|150004164|ref|YP_001298908.1| transposase [Bacteroides v... 195 3e-48
gi|34540845|ref|NP_905324.1| integrase [Porphyromonas gingi... 195 4e-48
gi|150003228|ref|YP_001297972.1| transposase [Bacteroides v... 193 1e-47
gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_035... 192 3e-47
gi|83857491|ref|ZP_00951019.1| putative transposase [Crocei... 192 4e-47
gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_029... 185 3e-45
gi|53713277|ref|YP_099269.1| tyrosine type site-specific re... 184 6e-45
gi|29347986|ref|NP_811489.1| transposase [Bacteroides theta... 184 1e-44
gi|150004653|ref|YP_001299397.1| tyrosine type site-specifi... 181 6e-44
gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC... 176 2e-42
gi|86130576|ref|ZP_01049176.1| putative transposase [Cellul... 174 1e-41
gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific ... 173 2e-41
gi|146302080|ref|YP_001196671.1| phage integrase family pro... 172 3e-41
gi|60683282|ref|YP_213426.1| putative phage integrase [Bact... 156 2e-36
gi|150007408|ref|YP_001302151.1| putative phage integrase [... 153 2e-35
gi|60681034|ref|YP_211178.1| putative integrase [Bacteroide... 147 1e-33
gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaio... 146 3e-33
gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_046... 145 4e-33
gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingi... 145 5e-33
gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_028... 145 6e-33
gi|53714292|ref|YP_100284.1| tyrosine type site-specific re... 144 6e-33
gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_009... 144 9e-33
gi|29347338|ref|NP_810841.1| transposase [Bacteroides theta... 144 1e-32
gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaio... 143 2e-32
gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific... 142 3e-32
gi|29349417|ref|NP_812920.1| integrase [Bacteroides thetaio... 142 3e-32
gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaio... 141 5e-32
gi|154492975|ref|ZP_02032601.1| hypothetical protein PARMER... 141 7e-32
gi|150006223|ref|YP_001300967.1| transposase [Bacteroides v... 130 1e-28
gi|156860192|gb|EDO53623.1| hypothetical protein BACUNI_029... 129 3e-28
gi|153808389|ref|ZP_01961057.1| hypothetical protein BACCAC... 127 1e-27
gi|53714324|ref|YP_100316.1| tyrosine type site-specific re... 126 2e-27
gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC... 125 4e-27
gi|124005636|ref|ZP_01690475.1| transposase, putative [Micr... 122 3e-26
gi|34540611|ref|NP_905090.1| integrase [Porphyromonas gingi... 122 4e-26
gi|29347745|ref|NP_811248.1| integrase protein [Bacteroides... 119 5e-25
gi|124008731|ref|ZP_01693421.1| transposase, putative [Micr... 118 6e-25
gi|53714293|ref|YP_100285.1| tyrosine type site-specific re... 114 7e-24
gi|29347339|ref|NP_810842.1| transposase [Bacteroides theta... 114 7e-24
gi|124004365|ref|ZP_01689211.1| transposase, putative [Micr... 114 9e-24
gi|10442749|gb|AAG17464.1|AF303352_5 Int [Bacteroides fragi... 114 1e-23
gi|124004236|ref|ZP_01689082.1| transposase, putative [Micr... 113 2e-23
gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_008... 112 4e-23
gi|156862826|gb|EDO56257.1| hypothetical protein BACUNI_000... 110 1e-22
gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER... 110 2e-22
gi|53712575|ref|YP_098567.1| tyrosine type site-specific re... 108 4e-22
gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaio... 108 8e-22
gi|150005337|ref|YP_001300081.1| integrase protein [Bactero... 103 1e-20
gi|29347370|ref|NP_810873.1| integrase [Bacteroides thetaio... 100 2e-19
gi|124008268|ref|ZP_01692964.1| transposase, putative [Micr... 99 6e-19
gi|8347627|gb|AAF74726.1|AF251288_3 integrase [Bacteroides ... 98 8e-19
gi|83815635|ref|YP_444738.1| Phage integrase family protein... 97 1e-18
gi|150004395|ref|YP_001299139.1| tyrosine type site-specifi... 97 2e-18
gi|153807870|ref|ZP_01960538.1| hypothetical protein BACCAC... 95 6e-18
gi|34540597|ref|NP_905076.1| integrase [Porphyromonas gingi... 95 7e-18
gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vul... 94 1e-17
gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides... 92 7e-17
gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_000... 91 1e-16
gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER... 90 2e-16
gi|53711957|ref|YP_097949.1| tyrosine type site-specific re... 90 2e-16
gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC... 88 8e-16
gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides... 87 1e-15
gi|60681762|ref|YP_211906.1| putative phage integrase [Bact... 87 2e-15
gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_046... 87 2e-15
gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaio... 87 2e-15
gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides... 86 3e-15
gi|67940331|ref|ZP_00532769.1| tyrosine type site-specific ... 84 2e-14
gi|29348887|ref|NP_812390.1| integrase [Bacteroides thetaio... 83 2e-14
gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_027... 80 2e-13
gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_030... 80 3e-13
gi|120600872|ref|YP_965446.1| phage integrase family protei... 79 3e-13
gi|156110579|gb|EDO12324.1| hypothetical protein BACOVA_018... 79 4e-13
gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica su... 79 6e-13
gi|150007897|ref|YP_001302640.1| tyrosine type site-specifi... 78 9e-13
gi|86130630|ref|ZP_01049230.1| integrase [Cellulophaga sp. ... 78 1e-12
gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER... 73 2e-11
gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides... 72 7e-11
gi|83814942|ref|YP_445217.1| Phage integrase family protein... 71 1e-10
gi|119357861|ref|YP_912505.1| phage integrase family protei... 70 2e-10
gi|60681336|ref|YP_211480.1| putative integrase/transposase... 70 3e-10
gi|150004298|ref|YP_001299042.1| integrase [Bacteroides vul... 70 3e-10
gi|156110994|gb|EDO12739.1| hypothetical protein BACOVA_015... 69 3e-10
gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC... 69 3e-10
gi|53713070|ref|YP_099062.1| tyrosine type site-specific re... 69 5e-10
gi|53713062|ref|YP_099054.1| probable truncated integrase [... 69 6e-10
gi|29348545|ref|NP_812048.1| integrase [Bacteroides thetaio... 68 1e-09
gi|156107020|gb|EDO08765.1| hypothetical protein BACOVA_046... 68 1e-09
gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae ... 67 2e-09
gi|153809443|ref|ZP_01962111.1| hypothetical protein BACCAC... 67 3e-09
gi|150009131|ref|YP_001303874.1| tyrosine type site-specifi... 61 9e-08
gi|83855510|ref|ZP_00949039.1| tyrosine type site-specific ... 61 1e-07
gi|154492977|ref|ZP_02032603.1| hypothetical protein PARMER... 60 2e-07
gi|154495387|ref|ZP_02034392.1| hypothetical protein PARMER... 60 2e-07
gi|89891088|ref|ZP_01202596.1| putative integrase [Flavobac... 59 6e-07
gi|150007898|ref|YP_001302641.1| transposase [Parabacteroid... 59 7e-07
gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_054... 58 9e-07
gi|67941223|ref|ZP_00533435.1| transposase [Chlorobium phae... 58 1e-06
gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemo... 58 1e-06
gi|150007399|ref|YP_001302142.1| transposase [Parabacteroid... 58 1e-06
gi|120435520|ref|YP_861206.1| phage integrase family protei... 57 1e-06
gi|1263306|gb|AAB06447.1| integrase IntN1 [Bacteroides unif... 57 2e-06
gi|54307145|ref|YP_133699.1| IntN1 [Bacteroides uniformis] ... 57 2e-06
gi|150003290|ref|YP_001298034.1| integrase [Bacteroides vul... 57 2e-06
gi|156860532|gb|EDO53963.1| hypothetical protein BACUNI_025... 57 2e-06
gi|146295078|ref|YP_001185502.1| phage integrase family pro... 56 3e-06
gi|146300455|ref|YP_001195046.1| phage integrase family pro... 56 4e-06
gi|53714058|ref|YP_100050.1| tyrosine type site-specific re... 55 6e-06
gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae ... 55 7e-06
gi|60682252|ref|YP_212396.1| putative recombinase/integrase... 55 9e-06
>gi|34541110|ref|NP_905589.1| integrase [Porphyromonas gingivalis W83]
gi|34397426|gb|AAQ66488.1| integrase [Porphyromonas gingivalis W83]
Length = 408
Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats.
Identities = 292/365 (80%), Positives = 332/365 (90%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLS+NAQLWDSEKEKVKGHS
Sbjct: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSVNAQLWDSEKEKVKGHS 60
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
AEALEVNRKIEEIRADILTIYKRL+VTV+DLT ERIKSEY G +DTL S++ELF+KHN D
Sbjct: 61 AEALEVNRKIEEIRADILTIYKRLEVTVDDLTPERIKSEYCGQTDTLNSIVELFDKHNED 120
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
VR QVGI KT ATLQKYEN KRHF +FLK+KY RTDLKFSELTPL+IHNFE++LLTVA C
Sbjct: 121 VRAQVGINKTAATLQKYENSKRHFTRFLKAKYNRTDLKFSELTPLVIHNFEIYLLTVAHC 180
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
PNT+TKILK KTIT+YG++HGFL+HDPF NKRFH +++ RGFLTDEEI+ +I KE++
Sbjct: 181 CPNTATKILKLFKTITLYGRRHGFLSHDPFVNKRFHTQDSSRGFLTDEEIQRIIGKEISI 240
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPG 300
PRLDLVRDIF+FSCF+GLAYIDV+NLTEDNIVELDGR+WIMT+RQKT +ATNI+LL+IP
Sbjct: 241 PRLDLVRDIFIFSCFSGLAYIDVSNLTEDNIVELDGREWIMTRRQKTRVATNIILLDIPK 300
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRDFYKRQIINRL 360
I+EKY PVRK LLP++SNQKMN YLKEIADLC I+K L+FHMAR+R+FYK QIINRL
Sbjct: 301 RIIEKYAPVRKNGHLLPILSNQKMNAYLKEIADLCNIRKPLSFHMARYREFYKHQIINRL 360
Query: 361 NCLSI 365
C+SI
Sbjct: 361 YCMSI 365
>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
Length = 412
Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats.
Identities = 169/349 (48%), Positives = 240/349 (68%), Gaps = 2/349 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F +F+++ + G PI +RI ++ S L + +LWD + K G S
Sbjct: 1 MKSTFNVLFFVKKDKQKINGSYPIFVRITIDGVASRFNSK-LDVQPKLWDGKAGKAAGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
AEA+ +NR +++I A + TIY + +T E++K+E+ G S+ +++ LF+KHN D
Sbjct: 60 AEAIRINRMLDDINASLNTIYHEMQRRDNYVTAEKVKNEFLGHSENHDTILNLFQKHNDD 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
V+ VGI+KT+AT +KYE +RH +F++SKY +D+ E+TP+ I +FEL+L T KC
Sbjct: 120 VKQLVGISKTIATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKC 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+ K ++F K I + + +G L DPFAN + LE DRG+LT++EIK ++ K+M S
Sbjct: 180 GFNTTAKFMQFFKRIILIARNNGILIGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVS 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
RL+ VRD+F+FSCF+GLAY+DVANL EDNI + DG WI+TKRQKTNI N+ LL+IP
Sbjct: 240 ERLEQVRDVFIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIP 299
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
MILEKY+ K+LP+ISNQK+N YLKEIAD+CGIKK+LTFH+ARH
Sbjct: 300 KMILEKYKGKLPNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFHLARH 348
>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
Length = 412
Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats.
Identities = 169/349 (48%), Positives = 238/349 (68%), Gaps = 2/349 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F +F+++ + G PI +RI ++ S L + +LWD + K G S
Sbjct: 1 MKSTFSVLFFVKKDKQKINGSYPIFVRITIDGVASRFNSK-LDVQPKLWDGKAGKAAGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
AEA +NR +++I A + TIY L +T E++K+E+ G S+ +++ LF+KHN D
Sbjct: 60 AEATRINRLLDDINASLNTIYHELQRRDNYVTAEKVKNEFLGHSENHDTILNLFQKHNDD 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
V+ VGI+KT+AT +KYE +RH +F++SKY +D+ E+TP+ I +FEL+L T KC
Sbjct: 120 VKQLVGISKTIATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKC 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+ K ++F K I + + +G L DPFAN + LE DRG+LT++EIK ++ K+M S
Sbjct: 180 GYNTTAKFMQFFKRIILIARNNGILIGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVS 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
RL+ VRD+F+FSCF+GLAY+DVANL EDNI + DG WI+TKRQKTN N+ LL+IP
Sbjct: 240 ERLEQVRDVFIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIP 299
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
MILEKY+ K+LP+ISNQK+N YLKEIAD+CGIKK+LTFH+ARH
Sbjct: 300 KMILEKYKGKLPNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFHLARH 348
>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats.
Identities = 165/349 (47%), Positives = 237/349 (67%), Gaps = 4/349 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F+ +FYL+ K G+ I+ RI ++ +L ST SI W K KG
Sbjct: 1 MKSTFKVLFYLKKGSEKKNGEVMIMARITIDG-KLCQFSTKQSIQPDNWSIAAGKAKGR- 58
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+A +N +++IR+ + TIY + +T E++K+E+ G S++ +++ LF+KHN D
Sbjct: 59 -DAGRINALLDDIRSSLHTIYHEMQRRDNYVTAEKVKNEFLGHSESHETILSLFQKHNDD 117
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
V+ VGI+KT+AT +KYE +RH +F++SKY +D+ E++P+ I +FEL+L T KC
Sbjct: 118 VKQLVGISKTIATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKC 177
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+ K ++F K I I + +G L DPFA+ + LE DRG+LT++EIK ++ K+M S
Sbjct: 178 GYNTTAKFMQFFKRIIIIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVS 237
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
RL+ VRD+F+FSCF GLAY DVANL ++NI + DG WI+TKRQKTN N+ LL+IP
Sbjct: 238 ERLEHVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIP 297
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
MIL+KY+ + K+LPVISNQK+N YLKEIAD+CGIKK+LTFH+ARH
Sbjct: 298 KMILKKYKGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARH 346
>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 410
Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats.
Identities = 168/349 (48%), Positives = 239/349 (68%), Gaps = 4/349 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F+ +FYL+ K G+ I+ RI ++ +L ST SI W+ K KG
Sbjct: 1 MKSTFKVLFYLKKGSEKKNGEVMIMARITIDG-KLCQFSTKQSILPDSWNIAAGKAKGK- 58
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+A ++N +++I+A + IY +T E++K+E+ G S+ +V+ LF+KHN D
Sbjct: 59 -DAGKINALLDDIKASLNNIYHEQQRRDNYVTAEKVKNEFLGHSEKHETVLTLFKKHNDD 117
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
V+ VGI+KT+AT +KYE +RH +F++SKY +D +E+TP+ I +FEL+L T KC
Sbjct: 118 VKQLVGISKTIATYRKYEVTRRHLAEFIQSKYNVSDFAINEITPMFITDFELYLRTTCKC 177
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+ K ++F K I + + +G L DPFA+ + LE DRG+L+++EIK ++ K+M S
Sbjct: 178 GYNTTAKFMQFFKRIILIARNNGILIGDPFASYKIRLEKVDRGYLSEDEIKIILKKKMVS 237
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
RL+ VRD+F+FSCFTGLAYIDVANLT+DNI + DG WI+TKRQKTN N+ LL+IP
Sbjct: 238 ERLENVRDLFIFSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIP 297
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
MIL+KY+ + K+LPVISNQK+N YLKEIAD+CGIKK+LTFH+ARH
Sbjct: 298 KMILKKYKGNLPDGKILPVISNQKLNAYLKEIADVCGIKKNLTFHLARH 346
>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 419
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 141/358 (39%), Positives = 216/358 (60%), Gaps = 12/358 (3%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEK--VKG 58
MKS F+++FYL+ N K G I++RI ++ +++ S+ L I+ WD++ + +
Sbjct: 1 MKSTFKTLFYLKKNEPKKNGHVVIMVRITVDGDQVQF-SSKLDIHPDNWDTKTGRAVINK 59
Query: 59 HSAEALE------VNRKIEEIRADILTIYKRLDVTVEDLTL-ERIKSEYFGTSDTLTSVM 111
SA+ E +N+ ++EIR+ I Y R+ + V+ L E+I++ + G + +++
Sbjct: 60 QSADKKENLRVSSLNKTLDEIRSAITMHYTRM-MNVDGYALPEKIRNAFLGLEEKEKTLI 118
Query: 112 ELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFE 171
F +HN +VG T T T +YE K+ +FL+ +YK +D+ E+T I NF
Sbjct: 119 SYFTQHNEQYAKKVGKTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFY 178
Query: 172 LFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIK 231
L+L + NT+ K ++ TI ++ QK G DPF N RF+ + TDRG+LT EEI
Sbjct: 179 LYLRQECEVSNNTAMKFVQRFHTILLFAQKSGLSFIDPFGNFRFNFDKTDRGYLTQEEID 238
Query: 232 NLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIA 290
+ +KE S RL+ VRD F+FSC+TGL Y D+ L+ ++I + +DG+KWIM R KT +
Sbjct: 239 TIYYKEFKSKRLEHVRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVE 298
Query: 291 TNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ I LL+IP IL KY K+ +LLPVISNQKMN YL EIA +C I K +T+H+ARH
Sbjct: 299 SFIPLLQIPLDILAKYEGKLKDGRLLPVISNQKMNEYLAEIAAICQINKRITYHLARH 356
>gi|156862827|gb|EDO56258.1| hypothetical protein BACUNI_00096 [Bacteroides uniformis ATCC 8492]
Length = 406
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 133/349 (38%), Positives = 211/349 (60%), Gaps = 2/349 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S FR +FYL+ K G PI++RI ++ E++ ST L I + WD + K G +
Sbjct: 1 MRSTFRVLFYLKKGAPLKNGMLPIMVRITIDGEKVEF-STKLEIEEKKWDIKSAKAAGRT 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
A E+N K++++R + Y+++ T +K+ Y G +++ +F+K +
Sbjct: 60 PAANEINLKLDKMRVEFNNHYEKIRSVGSFPTPLMLKNAYLGIKAKSHTMLTVFKKIVDE 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
Q+G++ + +T KYE R ++++K +YK TDL + ++ FE+FL K
Sbjct: 120 KGKQLGVSISKSTYSKYELVYRRLQEYIKQEYKNTDLPLYSIDDDFVNGFEIFLRVDKKV 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
N + K+++ LKT T Y + HG + DPF +K+ E+ D +LT EE++ ++ K++ +
Sbjct: 180 GHNATAKMMQKLKTSTTYAKSHGMMQEDPFYDKKITFEDVDVPYLTMEELQAVMEKDIQN 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRKWIMTKRQKTNIATNILLLEIP 299
RL VRDIF+FSCFTGLAY D LTE+++ + DG+ WI RQKT + +I LLE+P
Sbjct: 240 ARLRRVRDIFVFSCFTGLAYSDTYYLTEEHLYKANDGKMWIKKPRQKTKVIADIPLLEVP 299
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL+KYR + +LLPV SNQK+N YLKE+A +CGI K LT+H+AR+
Sbjct: 300 LQILDKYRGQQTGGRLLPVCSNQKVNQYLKELATVCGINKELTYHVARY 348
>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
Length = 410
Score = 234 bits (596), Expect = 8e-60, Method: Composition-based stats.
Identities = 131/351 (37%), Positives = 199/351 (56%), Gaps = 2/351 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FY++ G P++ RI ++ E + S + + +LWD + + G S
Sbjct: 1 MRSTFKVLFYVKKGSEKPNGNLPLMCRITVDGE-IKQFSCKMDVPLRLWDVKNNRASGKS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA +NR +++IR +I Y L T +T ++K Y G ++++LF++HN+
Sbjct: 60 VEAQRINRAVDKIRVEINRRYHELMQTGGYVTAAKLKDAYLGIGVKQETLLKLFDRHNAK 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+VG ++ T Q+Y +H +F+ YKR D+ EL I++FE FL T +C
Sbjct: 120 FAKKVGHSRAKGTFQRYITVCKHLHEFIPYTYKREDIPLKELNLTFINDFEYFLRTEKRC 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
R NT + LK I + G L +PFA E+ DRG+LT EI+ L+ M +
Sbjct: 180 RTNTVWGYMIVLKHIVAIARNDGRLPFNPFAGYINSPESVDRGYLTKSEIQTLMDAPMKN 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
+LVRD+F+FS FTGLAY DV NLT DN+ DG WI+T+R+KTN +NI LL++P
Sbjct: 240 AYHELVRDMFVFSVFTGLAYSDVKNLTTDNLQTFFDGNLWIITRRKKTNTESNIRLLDVP 299
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKYR + ++ K+ P+ SN N LKEI CG K L+ H+ARH +
Sbjct: 300 RKIIEKYRGLARDNKVFPMPSNTTCNKILKEIGRQCGFKTRLSTHVARHTN 350
>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
Length = 410
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 130/351 (37%), Positives = 198/351 (56%), Gaps = 2/351 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FY++ G P++ RI ++ E + S + + +LWD + + G S
Sbjct: 1 MRSTFKVLFYVKKGSEKPNGNLPLMCRITVDGE-IKQFSCKMDVPPRLWDVKNSRASGKS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA +N +++IR ++ Y+ L T +T ++K Y G ++++LFE+HN++
Sbjct: 60 VEAQRINLAVDKIRVEVNRRYQELMQTDGYVTAAKLKDAYLGIGIKQETLLKLFEQHNAE 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+VG ++ T +Y H +FL YKR D+ EL I++FE FL T KC
Sbjct: 120 FEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKREDILLKELNLTFINDFEYFLRTEKKC 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
R NT + LK I + G L +PFA EN DRG+LT EI+ L++ M +
Sbjct: 180 RTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYINSPENVDRGYLTQTEIQTLMNAPMKN 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
+LVRD+F+FS FTGLAY DV NLT D + DG WI+T+R+KTN +NI LL++P
Sbjct: 240 ATHELVRDLFVFSVFTGLAYSDVKNLTTDRLQTFFDGNLWIITRRKKTNTESNIRLLDVP 299
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKY+ + ++ + PV SN N LK+I CG K LT+H+ARH +
Sbjct: 300 KRIIEKYKGLARDGHVFPVPSNGSCNKILKDIGRQCGFKVRLTYHVARHTN 350
>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 402
Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 120/348 (34%), Positives = 209/348 (60%), Gaps = 2/348 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F++VFY+ + K G PI+ R+ +N ++ S SI+ +LWD++ + KG S
Sbjct: 1 MRSTFKTVFYVNGSK-EKSGIVPIMGRVTINGT-IAQFSCKQSISKELWDAKANRAKGKS 58
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
++++VN ++ I+A I Y+RL +T E +++ Y G +V+ F+K N+D
Sbjct: 59 RKSMDVNHALDNIKAQIAKHYQRLSDREAFVTAEMVRNAYQGIGTEYETVLRAFDKMNAD 118
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+VG ++ T +KY +++ +F+K+ YKR+D+ +ELT IH++ L+L
Sbjct: 119 FAKRVGKDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNELTEEFIHDYCLYLRNEVGL 178
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
++ LK I HG + +PFA + ++ +RGFLT+ EIK + E+ +
Sbjct: 179 AQSSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKERGFLTENEIKAMSTIELEN 238
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPG 300
+ RDIF+F C+TG++++D+ NLT DNIVEL+G +WI++KRQKT + I L++IP
Sbjct: 239 ANFAIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPA 298
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+E+ +P R + L + S +N +K +A +CGI+K+++FH++RH
Sbjct: 299 QIIERNKPFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNISFHLSRH 346
>gi|88805941|ref|ZP_01121459.1| tyrosine type site-specific recombinase [Robiginitalea biformata
HTCC2501]
gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
HTCC2501]
Length = 423
Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 132/352 (37%), Positives = 203/352 (57%), Gaps = 5/352 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M F +FY++ N PI +RI ++ +R + ST I+ + WD++ +++G++
Sbjct: 1 MTQTFSLLFYIKGKCHNPFVPVPIYMRITVDGKRSEM-STARKIDPEKWDAKAGRMRGNT 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA E+N ++ IRA I I+ + + + T +IK Y +ME+FE+HN
Sbjct: 60 QEASELNHYLDMIRAKINKIHYQFIESEKPFTARQIKERYLQKDQRFKMLMEVFEEHNRQ 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
++ VG + T ++Y +H +FLK++Y+R D+ E+ I+ F+ FL +C
Sbjct: 120 MKSLVGKEYALGTWKRYNTTFKHTREFLKTEYRRDDIPMMEVDLRFINRFDYFLKFTKEC 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
N+S K + K I G + ++ DPF N + + DR +LT EE++ LI+ E+
Sbjct: 180 NHNSSLKYINNFKKIIRMGVANDWIQKDPFYNFKAKFKWVDREYLTREELERLINYEVTV 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
PR+ +V+D+F+F CFTGLAYIDV LT +NIV+ +DG WI + RQKT I LL
Sbjct: 240 PRMGIVKDMFVFCCFTGLAYIDVKKLTPNNIVKHIDGSLWIQSARQKTRSKLGIPLLPTA 299
Query: 300 GMILEKYR---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+EKY V ++PV+SNQ+ N YLKEIAD+CGI KHLT H+ARH
Sbjct: 300 LEIIEKYEDHPKVVNGDCVIPVLSNQRSNAYLKEIADICGITKHLTTHLARH 351
>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 407
Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats.
Identities = 135/352 (38%), Positives = 198/352 (56%), Gaps = 6/352 (1%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
++ F +FY+R +N+ G+ PI++RI +N R+ S +I + W + K K
Sbjct: 3 RTTFCLLFYIRRTKLNRNGEAPIMMRITVNGVRVD-ASVKKTILPEFWSAAKGKALEKKR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLT-SVMELFEKHNSD 120
E E+N ++ IR I+ I + L++ ++ + + G + ++ E+F +HN
Sbjct: 62 EYKELNLYLDSIRLRIMKIQRELEIEEVSVSANSVLDRFLGKDAPVQRTLFEVFREHNDK 121
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
G AT+Q+YE +H F+ Y + D+ E++ I ++E +L T KC
Sbjct: 122 CVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKC 181
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+TK LK K I G++ +DPF RF L+ + FL D EI+ LI KE+
Sbjct: 182 CHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVEPDFLEDSEIQKLISKEIDI 241
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
PRL VRDIF+F CFTGLA+ D+ L +++IVE +G +WI RQKT I NI L+EIP
Sbjct: 242 PRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIP 301
Query: 300 GMILEKYRP---VRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKY +K L PV+ NQKMN YLKE+AD+CGIKK LT H+ RH
Sbjct: 302 LKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRH 353
>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 407
Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats.
Identities = 131/352 (37%), Positives = 200/352 (56%), Gaps = 6/352 (1%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
++ F +FY+R +N+ G+ PI++RI +N R+ S +I + W + K K
Sbjct: 3 RTTFCLLFYIRRTKLNRNGEAPIMMRITVNGVRVD-ASVKKTIFPEFWSAAKGKALEKKR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLT-SVMELFEKHNSD 120
E E+N ++ IR I+ I + L++ ++ + + G + ++ E+F +HN
Sbjct: 62 EYKELNLYLDSIRLRIMKIQRELEIEGVSVSANSVLERFLGKDAPVQRTLFEVFREHNDK 121
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
G AT+Q+YE +H + F+ Y + D+ +++ I ++E +L T KC
Sbjct: 122 CAQLSGTDMAPATVQRYETSLKHTQDFVWETYHKKDILLGDVSRQFIEDYEFWLKTEKKC 181
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+TK LK K I G++ +DPF+ +F L+ + FL D EI+ LI KE+
Sbjct: 182 CHNTATKYLKNFKKIIRIALAKGWMKNDPFSEIKFSLDKVEPDFLEDSEIQKLISKEIDI 241
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIP 299
PRL VRD+F+F CFTGLA+ D+ +L +++IVE +G KWI RQKT I NI L+E+P
Sbjct: 242 PRLGQVRDVFVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQKTKIMCNIPLMEVP 301
Query: 300 GMILEKYRP---VRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL KY + L PV+ NQKMN YLKE+AD+CGIKK LT H+ARH
Sbjct: 302 LKILGKYSTNEYCKSRGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVARH 353
>gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
43184]
gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
43184]
Length = 415
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 127/350 (36%), Positives = 198/350 (56%), Gaps = 2/350 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY++ G P++ R+ ++ E + S L + +LWD + + G SA
Sbjct: 7 RSTFKILFYVKKGSERANGYLPLMCRLTVDGE-IKQFSCKLDVPPKLWDVKTARATGKSA 65
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA ++N +++ IR D+ Y+ L + +T R++ G ++++LFE+HN +
Sbjct: 66 EAQKINAEVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEF 125
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG ++ T +Y RH +F+ Y+R D+ EL I+NFE FL T KCR
Sbjct: 126 IKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCR 185
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
NT + LK + + G L +PFA E+ DRG+LT+ EI+ L+ + S
Sbjct: 186 TNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEAPVKSG 245
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPG 300
+LVRD+F+FS FTGLAY DV LT D + DG WI+T+R+KTN +NI LL++P
Sbjct: 246 TCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPK 305
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKY+ + K+ + PV SN + N LKE+ CG K LT+H+ARH +
Sbjct: 306 RIIEKYKGLSKDDHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTN 355
>gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 411
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 127/350 (36%), Positives = 197/350 (56%), Gaps = 2/350 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY++ G P++ R+ ++ E + S L + +LWD + + G SA
Sbjct: 3 RSTFKILFYVKKGSERANGYLPLMCRLTVDGE-IKQFSCKLDVPPKLWDVKTARATGKSA 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA ++N ++ IR D+ Y+ L + +T R++ G ++++LFE+HN +
Sbjct: 62 EAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEF 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG ++ T +Y RH +F+ Y+R D+ EL I+NFE FL T KCR
Sbjct: 122 IKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCR 181
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
NT + LK + + G L +PFA E+ DRG+LT+ EI+ L+ + S
Sbjct: 182 TNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMETPVKSG 241
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPG 300
+LVRD+F+FS FTGLAY DV LT D + DG WI+T+R+KTN +NI LL++P
Sbjct: 242 TCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPK 301
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKY+ + K+ + PV SN + N LKE+ CG K LT+H+ARH +
Sbjct: 302 RIIEKYKELSKDGHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTN 351
>gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 415
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 127/350 (36%), Positives = 197/350 (56%), Gaps = 2/350 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY++ G P++ R+ ++ E + S L + +LWD + + G SA
Sbjct: 7 RSTFKILFYVKKGSERANGYLPLMCRLTVDGE-IKQFSCKLDVPPKLWDVKTARATGKSA 65
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA ++N ++ IR D+ Y+ L + +T R++ G ++++LFE+HN +
Sbjct: 66 EAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNGEF 125
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG ++ T +Y RH +F+ Y+R D+ EL I+NFE FL T KCR
Sbjct: 126 IKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCR 185
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
NT + LK + + G L +PFA E+ DRG+LT+ EI+ L+ + S
Sbjct: 186 TNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEAPVKSG 245
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPG 300
+LVRD+F+FS FTGLAY DV LT D + DG WI+T+R+KTN +NI LL++P
Sbjct: 246 TCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPK 305
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKY+ + K+ + PV SN + N LKE+ CG K LT+H+ARH +
Sbjct: 306 RIIEKYKGLSKDDHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTN 355
>gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 415
Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 127/350 (36%), Positives = 197/350 (56%), Gaps = 2/350 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY++ G P++ R+ ++ E + S L + +LWD + + G SA
Sbjct: 7 RSTFKILFYVKKGSERANGYLPLMCRLTVDGE-IKQFSCKLDVPPKLWDVKTARATGKSA 65
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA ++N ++ IR D+ Y+ L + +T R++ G ++++LFE+HN +
Sbjct: 66 EAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEF 125
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG ++ T +Y RH +F+ Y+R D+ EL I+NFE FL T KCR
Sbjct: 126 IKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCR 185
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
NT + LK + + G L +PFA E+ DRG+LT+ EI+ L+ + S
Sbjct: 186 TNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMEAPVKSG 245
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPG 300
+LVRD+F+FS FTGLAY DV LT D + DG WI+T+R+KTN +NI LL++P
Sbjct: 246 TCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPK 305
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKY+ + K+ + PV SN + N LKE+ CG K LT+H+ARH +
Sbjct: 306 RIIEKYKGLSKDDHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTN 355
>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
43184]
gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
43184]
Length = 411
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+ F +F+++ + K G+ + +RI +N R+ + SI LW+ KE KG S
Sbjct: 3 RDSFNVLFFIKKAKLLKNGEASVCMRITVNGARVE-NNIRKSIEPALWNQAKECAKGKSR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFG---TSDTLTSVMELFEKHN 118
++ ++N IEE R + + L+ + +T ++ ++FG S+ + +++ ++HN
Sbjct: 62 KSCDLNAYIEEARIKLHQTFNELEEQGQFITARLLQEKFFGQDKASEAIRTLIGTMQEHN 121
Query: 119 SDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
R VG + T+++YE+CKR+ + +K KY + DL SE+ ++ +FE +L T
Sbjct: 122 DQCRELVGKDYALITVRRYESCKRYLAELIKLKYGKEDLPLSEVNGELVRSFEFYLKTEK 181
Query: 179 KCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEM 238
+C+ NT + +K LK IT + ++ DPF +FH + R FLT +E+ + HKE
Sbjct: 182 ECQQNTVIRYMKCLKKITNLALANEWITKDPFIGIKFHEKEVIREFLTMDELLTIYHKEF 241
Query: 239 ASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLE 297
+ R+ +VRD+F F+ FTGLA+IDV L ++IVE +G WI RQKT NI LL+
Sbjct: 242 SLERITIVRDVFTFAAFTGLAFIDVQQLAPEHIVEDSNGNLWIRKPRQKTKNMCNIPLLD 301
Query: 298 IPGMILEKYR---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IP IL KY +K+ +LLPV NQKMN YLKEIADLC I K LT H+ARH
Sbjct: 302 IPLEILRKYAEHPACQKKNRLLPVPCNQKMNSYLKEIADLCMINKTLTTHVARH 355
>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 406
Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats.
Identities = 128/349 (36%), Positives = 208/349 (59%), Gaps = 3/349 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+ F +F+++ + K G+ P+ +RI +N + + S S LW+ KE KG
Sbjct: 3 RKSFSVLFFIKKGKLLKNGEAPVCMRITVNGCMVDI-SIKRSCPVNLWNQAKENSKGKDR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
++E+N +E R+ + IY+ L+ + + +T++ ++ ++G + +++++F++HN
Sbjct: 62 MSVELNHYLEITRSHVHQIYRELETSGKVITVDLVRKLFYGVDEDNKTLLQVFKEHNEHS 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
R +G T+Q+YE R+ E+F+K +Y+ +D+ + L I F+ FL C
Sbjct: 122 RKLIGKDFVSKTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCA 181
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
N++ LK LK I ++ ++ DPFA RF LE TD FLT +EIK ++ KE
Sbjct: 182 QNSAITRLKNLKKIIRIALENDWIKKDPFAYYRFKLEETDPEFLTMDEIKIILAKEFTIK 241
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEIPG 300
R++ VRD+F+F FTGLA+ DV +L+ +++V+ + G WI RQKT I NI +L +
Sbjct: 242 RVEQVRDVFIFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAV 301
Query: 301 MILEKYRPVRK-ERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKY+ V + KLLPV+SNQ+MN YLKEIAD+CGI K+L+ H ARH
Sbjct: 302 SILEKYKNVAECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARH 350
>gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
43184]
gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
43184]
Length = 415
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 127/350 (36%), Positives = 197/350 (56%), Gaps = 2/350 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY++ G P++ R+ ++ E + S L + +LWD + + G SA
Sbjct: 7 RSTFKILFYVKKGSERANGYLPLMCRLTVDGE-IKQFSCKLDVPPKLWDVKTARATGKSA 65
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA ++N ++ IR D+ Y+ L + +T R++ G ++++LFE+HN +
Sbjct: 66 EAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEF 125
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG ++ T +Y RH +F+ Y+R D+ EL I+NFE FL T KCR
Sbjct: 126 IKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKCR 185
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
NT + LK + + G L +PFA E+ DRG+LT+ EI+ L+ + S
Sbjct: 186 TNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTECEIQTLMETPVKSG 245
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPG 300
+LVRD+F+FS FTGLAY DV LT D + DG WI+T+R+KTN +NI LL++P
Sbjct: 246 TCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPK 305
Query: 301 MILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
I+EKY+ + K+ + PV SN + N LKE+ CG K LT+H+ARH +
Sbjct: 306 RIIEKYKGLSKDGHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTN 355
>gi|60681592|ref|YP_211736.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|60493026|emb|CAH07806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 416
Score = 221 bits (562), Expect = 8e-56, Method: Composition-based stats.
Identities = 131/345 (37%), Positives = 203/345 (58%), Gaps = 5/345 (1%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F ++ + K G+ P+ +RI +NK R++ SI LW+ +KE KG A+E+N
Sbjct: 21 LFIIKKAKLLKNGEAPVCMRITVNK-RVAEVMIKRSIPVDLWNQKKECSKGKDRVAIELN 79
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I +RA +L I++ L++ + +T + IK ++G S+ E++++HN R +G
Sbjct: 80 HYINTVRAKVLQIHRELEIDNKPITADIIKDCFYGRDKVQRSLQEVYKEHNEKCRALIGK 139
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
T +T+ K++ +++++S Y R D+ +EL I +F+ +L T C+ N++ K
Sbjct: 140 EYTESTVIKFDTSINRLKEYIRSCYHRDDIMLAELDGQFIRDFDFWLKTEKHCQNNSALK 199
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
LK LK + + ++ DPF F E + FL+ EE+ L++KE A RL+ VR
Sbjct: 200 HLKNLKKVVRIALANDWIKKDPFYGIHFKQEEVNVEFLSREELDILMNKEFAIKRLEQVR 259
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEIPGMILEKY 306
DIF+F CFT LA++DV L+ +++++ + G WI RQKTN NI +L IP IL KY
Sbjct: 260 DIFVFCCFTALAFVDVQQLSREHLIKDNSGALWIRKARQKTNQMCNIPVLSIPQRILRKY 319
Query: 307 R---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
K+ LLPVISNQ+MN YLKEIADLCGI K LT H+ARH
Sbjct: 320 EDNAECIKKGVLLPVISNQRMNAYLKEIADLCGITKRLTTHVARH 364
>gi|154495261|ref|ZP_02034266.1| hypothetical protein PARMER_04317 [Parabacteroides merdae ATCC
43184]
gi|154085185|gb|EDN84230.1| hypothetical protein PARMER_04317 [Parabacteroides merdae ATCC
43184]
Length = 359
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 125/354 (35%), Positives = 204/354 (57%), Gaps = 5/354 (1%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
++ F +F ++ + + K G+ PI +RI +N +R + S++ W+S+KE G
Sbjct: 5 RNYFTILFLIKKSKLLKNGEAPICMRITVNGQRAEI-QIKRSVDISKWNSQKECAIGKER 63
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
+++E+N ++ +R +L I++ L+ + +T + +K Y+G D+ ++E+F++HN
Sbjct: 64 KSMELNHYLDTVRMKVLQIHRELEQDGKPITADVLKRRYYGEGDSPKMLLEVFQEHNRKY 123
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
R +G T+ +YE R+ + L+ +Y+ D+ E+ I FE ++ T C
Sbjct: 124 RELMGKVYVAGTVLRYERTARYLGELLQKEYRMNDIPLKEINHEFIARFEHYVKTEKSCA 183
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
N + K LK K I + ++ DPF F T+R FLT+EE+ L+ KE P
Sbjct: 184 QNATVKYLKNFKKIIKVALVNKWITDDPFLEIHFKQTKTNRAFLTEEELNILLKKEFTIP 243
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIV-ELDGRKWIMTKRQKTNIATNILLLEIPG 300
RL VRDIF+F TGLA+ DV +L ++I+ +++G WI R+KT+ +I LL+IP
Sbjct: 244 RLQTVRDIFVFCALTGLAFTDVQHLRYEHIIKDVNGEYWIRKAREKTDNMCDIPLLDIPR 303
Query: 301 MILEKYRP---VRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRDF 351
MILEKY+ K+ +LPV SNQ+MN YLKEIAD+CGI K L+ H+A+H F
Sbjct: 304 MILEKYKTHPECLKKGVVLPVPSNQRMNSYLKEIADICGINKPLSTHVAKHCTF 357
>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
Length = 412
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/345 (36%), Positives = 194/345 (56%), Gaps = 5/345 (1%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F+++ + +N GKT I +RI L+ R S I W+S + G+S EA E+N
Sbjct: 17 LFFIKKSKVNASGKTTIFLRITLDGRRCEF-SVHRKIKLGWWNSRTQLALGNSPEAQEIN 75
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
+ + ++ I +I + + + ++ G T ++E+F++HN V +G
Sbjct: 76 KYLSVVKNKIYSIQQNFERENIAYSASSLRDALLGKDKTQKMLLEIFQEHNDKVESLIGK 135
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
T ++Y CK+H F+K KY + D+ ++ I E +L T KC N++ K
Sbjct: 136 DFATGTAERYRTCKKHVAAFVKQKYNKNDIPVQDVDHKFITGLEYYLKTTRKCAHNSAIK 195
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
+ K I + ++ DPF + + L+ +R FLT+EEI+ +I + RLD VR
Sbjct: 196 YITNFKKIIRIAHANDWIDKDPFLHWKGKLKIVEREFLTEEEIQKIIDLHLKMERLDQVR 255
Query: 248 DIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIPGMILEKY 306
DIF+F CFTGLAY DV L +I V DG +W+ TKR KT+ +NI +L I I+EKY
Sbjct: 256 DIFIFCCFTGLAYADVKKLNRGDISVGADGEEWVKTKRSKTDTRSNIPILPIAKTIIEKY 315
Query: 307 R--PVRKERKL-LPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ + KE+ L LPV+SNQKMN Y+KEIA+L GI K+LTFH+ARH
Sbjct: 316 KDNELLKEKDLVLPVLSNQKMNAYIKEIANLAGISKNLTFHLARH 360
>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 483
Score = 218 bits (554), Expect = 6e-55, Method: Composition-based stats.
Identities = 122/350 (34%), Positives = 197/350 (56%), Gaps = 3/350 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F +FYL+ + K+G P++ RI ++ + S L++ +LWD++ +V G S
Sbjct: 73 MKSTFSVIFYLKRQVVKKDGTVPVMGRITVDGSQTQF-SCKLTVYPKLWDTKGGRVTGRS 131
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
ALE NR ++++R I Y+ + +T E++K+ + G ++M++F +HN D
Sbjct: 132 TAALEANRLLDKMRVRINRHYQEIMERDNYVTAEKVKNAFLGLEHRYHTLMQVFSRHNED 191
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
QV K TL KY+ +H ++FL +Y D+ ELTP I +FE+FL T
Sbjct: 192 YEKQVEAGMKAKGTLAKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKH 251
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
C NT + L+T+ + +L HDPF E T R FLT +EI+ L+ ++
Sbjct: 252 CCTNTVWLYVCPLRTMVFIAINNEWLTHDPFREYEIKKEETTRSFLTKDEIRLLMDGKLK 311
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
+ + +L RD++LF FTGL++ D+ NLTE+NI D +WI RQKT + +NI LL+I
Sbjct: 312 NAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWINISRQKTGVVSNIRLLDI 371
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I++KYR + ++ ++ PV ++ +A CGI KH+T+H +RH
Sbjct: 372 AKRIIDKYRGLCEDGRIFPVPHYMTCLHGIRAVAKRCGITKHITWHQSRH 421
>gi|53713347|ref|YP_099339.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216212|dbj|BAD48805.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 218 bits (554), Expect = 6e-55, Method: Composition-based stats.
Identities = 127/345 (36%), Positives = 201/345 (58%), Gaps = 5/345 (1%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F ++ + K G+ PI +RI +NK R++ SI LW+ +KE KG A+E+N
Sbjct: 12 LFIIKKAKLLKNGEAPICMRITVNK-RVAEVMIKRSIPVDLWNQKKECSKGKDRVAIELN 70
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I +RA +L I++ L++ + +T + IK ++G +++E++ +HN R +G
Sbjct: 71 HYINTVRAKVLQIHRELEIDNKPITADIIKDCFYGRDKVQRTLLEVYAEHNEKCRALIGK 130
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
T +T+ K++ +++++S Y R D+ +EL I +F+ +L T C+ N++ K
Sbjct: 131 EYTESTVTKFDTSINRLKEYIRSCYHRDDIMLAELDGQFIRDFDFWLKTEKHCQNNSALK 190
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
LK LK + + ++ DPF F E + FL EE+ L++KE RL+ VR
Sbjct: 191 HLKNLKKVVRIALANDWIKKDPFYGIHFKQEEVNVEFLLREELDVLMNKEFTIKRLEQVR 250
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIV-ELDGRKWIMTKRQKTNIATNILLLEIPGMILEKY 306
D+F+F CFT LA++DV L+ ++++ + +G WI RQKTN N+ +L IP IL KY
Sbjct: 251 DVFVFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQKTNQMCNVPVLSIPQRILRKY 310
Query: 307 R---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
K+ LLPVISNQ+MN YLKEIAD+CGI K LT H+ARH
Sbjct: 311 DDNVECIKKGVLLPVISNQRMNAYLKEIADVCGIAKRLTTHVARH 355
>gi|150007906|ref|YP_001302649.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
gi|149936330|gb|ABR43027.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
Length = 359
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 123/355 (34%), Positives = 204/355 (57%), Gaps = 5/355 (1%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
++ F +F+++ + + K G+ PI +RI +N +R + S++ W+S+KE G
Sbjct: 5 RNYFTILFFIKKSKLLKNGEAPICMRITVNGQRAEI-QIKRSVDISKWNSQKECAIGKER 63
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
+++E+N ++ +R +L I++ L+ + +T + +K Y+G D+ ++E+F +HN
Sbjct: 64 KSMELNHYLDTVRMKVLQIHRELEQDGKPITADVLKRRYYGEGDSPKMLLEVFREHNRKY 123
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
R +G T+ +YE ++ + L+ +Y+ D+ E+ I FE ++ T C
Sbjct: 124 RELMGKDYVAGTVLRYERTAKYLGELLQKEYRINDIPLKEINHEFIARFEHYIKTEKSCA 183
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
N + K LK K I + ++ +DPF F T+R FLT+EE+ L+ KE P
Sbjct: 184 QNATVKYLKNFKKIIKMALVNKWITNDPFLEIHFKQTKTNRAFLTEEELNILLKKEFTIP 243
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIV-ELDGRKWIMTKRQKTNIATNILLLEIPG 300
RL VRDIF+F TGLA+ DV +L ++I+ +++G WI R+KT+ +I LL+IP
Sbjct: 244 RLQTVRDIFVFCALTGLAFTDVQHLRYEHIIKDVNGEYWIRKAREKTDNMCDIPLLDIPR 303
Query: 301 MILEKYRP---VRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRDFY 352
MILEKY+ K+ +LPV SNQ+MN YLKEIAD+CGI K L+ H+ +H Y
Sbjct: 304 MILEKYKTHPECLKKGVVLPVPSNQRMNSYLKEIADICGINKPLSTHVRKHSKIY 358
>gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
Length = 411
Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 121/350 (34%), Positives = 197/350 (56%), Gaps = 3/350 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F ++YL+ + K+G P++ RI ++ + S L+I+ +LWD++ +V G S
Sbjct: 1 MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQF-SCKLTIDPKLWDTKGGRVTGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
ALE NR ++++R I Y+ + +T E++K+ + G ++M++F++HN D
Sbjct: 60 TAALETNRMLDKMRVRINKHYQEIMERDNFVTAEKVKNAFLGLEHRYHTLMQVFQQHNED 119
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
QV K TL KY+ +H ++FL +Y D+ ELTP I +FE+FL T
Sbjct: 120 YAKQVEAGMKAKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKH 179
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
C NT + L+T+ + +L DPF E T R FLT +EI+ L+ ++
Sbjct: 180 CCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKDEIRLLMEGKLK 239
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
+ + +L RD++LF FTGL++ D+ NLTE+NI D +WI RQKT + +NI LL+I
Sbjct: 240 NAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDI 299
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I++KYR + + ++ PV ++ +A CGI KH+T+H +RH
Sbjct: 300 AKQIIDKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRH 349
>gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 410
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 127/349 (36%), Positives = 192/349 (55%), Gaps = 2/349 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FYL+ N K G P++ R+ +N ++S S L + + W+ E ++ G S
Sbjct: 1 MRSTFKVLFYLKRNAPKKNGLVPVMCRVTVNG-KVSQFSCKLDVEEKSWNVELGRLSGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
A E N +++IR I Y+ + +T E++++ + G +++ +F +HN D
Sbjct: 60 TVAQEGNWILDKIRVGINKTYQEICDRDNYVTAEKVRNAFLGMGMKHETLLAVFAQHNED 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
QVG K+ + KY H +F+K +YK +D+ ELTP I +FELFL T
Sbjct: 120 YAKQVGKIKSERSYWKYCTVYNHLSEFIKQRYKVSDIALKELTPAFITDFELFLRTEKDH 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT + L+ I +G+L DPF E T RGFLT EEI LI+
Sbjct: 180 CTNTVWSYMMPLRRIIYMAINNGWLQRDPFYGYSITKEETKRGFLTKEEITLLINGTFKK 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIP 299
+L+RD+F+F FTGL++ D+ANL ++N+ + DG WI TKRQKT +NI LLE+
Sbjct: 240 KSYELIRDLFIFCTFTGLSWTDMANLMKENLEISFDGHLWIKTKRQKTGTESNIRLLEVA 299
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+EKY + K+ KLLPV +K IA CGI K++T+H +RH
Sbjct: 300 RHIIEKYEGMAKDGKLLPVPCYPNCKNGIKVIAKHCGIDKNVTWHQSRH 348
>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
43184]
gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
43184]
Length = 411
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 120/350 (34%), Positives = 194/350 (55%), Gaps = 3/350 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F ++YL+ + K+G P++ RI ++ + S L+++ +LWD++ +V G S
Sbjct: 1 MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQF-SCKLTVDPKLWDTKGGRVTGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
ALE NR ++++R I Y+ + +T E++K+ + G ++M++F +HN D
Sbjct: 60 TAALETNRMLDKMRVRINRHYQEIMERDNFVTAEKVKNAFLGLEHRYHTLMQVFRQHNED 119
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
QV K TL KY +H ++FL +Y D+ ELTP I +FE+FL T
Sbjct: 120 YEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTDKH 179
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
C NT + L+T+ + +L DPF E T R FLT +EI+ L+ ++
Sbjct: 180 CCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKDEIRLLMEGKLK 239
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
+ + +L RD++LF FTGL++ D+ NLTE+NI D +WI RQKT + +NI LL+I
Sbjct: 240 NAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDI 299
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+ KYR + + ++ PV ++ +A CGI KH+T+H +RH
Sbjct: 300 ANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRH 349
>gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
Length = 411
Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 120/350 (34%), Positives = 194/350 (55%), Gaps = 3/350 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F ++YL+ + K+G P++ RI ++ + S L+++ +LWD++ +V G S
Sbjct: 1 MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQF-SCKLTVDPKLWDTKGGRVTGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
ALE NR ++++R I Y+ + +T E++K+ + G ++M++F +HN D
Sbjct: 60 TAALETNRMLDKMRVRINKHYQEIMERDNFVTAEKVKNAFLGLEHRYHTLMQVFRRHNED 119
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
QV K TL KY +H ++FL +Y D+ ELTP I +FE+FL T
Sbjct: 120 YEKQVEAGMKAKGTLLKYRTVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTDKH 179
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
C NT + L+T+ + +L DPF E T R FLT EEI+ L+ ++
Sbjct: 180 CCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKEEIRLLMEGKLK 239
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
+ + +L RD++LF FTGL++ D+ NLT++NI D +WI RQKT + +NI LL+I
Sbjct: 240 NAKQELYRDLYLFCAFTGLSFSDMRNLTDENIRTYFDEHEWININRQKTGVVSNIRLLDI 299
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+ KYR + + ++ PV ++ +A CGI KH+T+H +RH
Sbjct: 300 ANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRH 349
>gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
Length = 431
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 122/351 (34%), Positives = 199/351 (56%), Gaps = 7/351 (1%)
Query: 2 KSQFRSVFYL-RSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
+S F + FY+ RS N++GK PI+++I ++ + ++G T L + LW E K KG S
Sbjct: 5 RSTFATSFYIKRSAVRNRDGKAPIMVKISVDGDDKAVG-TKLFVTPDLW--ENGKAKGKS 61
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
AEA E+N +++E+ A + Y R+ + +T E++++ + G +++ F N +
Sbjct: 62 AEANEINGQLKEVSARLTNHYHRILREEDFVTAEKLRNAFLGVGVMENCILKDFGNMNRE 121
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
V + +T KY HF+ FL K KRTD+ + ELT II +F+ +L
Sbjct: 122 FGAMVEKGQRAKSTYNKYLAVYNHFKTFLWEKKKRTDMAYKELTKEIIADFDKYLRVEKG 181
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
NT L ++T + G + DPF ++ TDRG+LT+EE++ L +
Sbjct: 182 LSANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEYSLEMQETDRGYLTEEELRTLANAVFV 241
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI--VELDGRKWIMTKRQKTNIATNILLLE 297
+ LVRD+FLF CFTGL+YID+ LT D I ++ DG +WI+T+R KT +++N+ L+E
Sbjct: 242 KKQTSLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLME 301
Query: 298 IPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I ++E+Y+ + + P+ SN N +LK+IA CGI K + FH++RH
Sbjct: 302 IAKELIERYKGLAGGDLVFPIPSNSVCNRHLKQIAKACGIHKEIGFHLSRH 352
>gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
Length = 431
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 122/351 (34%), Positives = 199/351 (56%), Gaps = 7/351 (1%)
Query: 2 KSQFRSVFYL-RSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
+S + + FY+ RS N++GK PI+++I ++ + ++G T L + LW E K KG S
Sbjct: 5 RSTYATSFYIKRSAVRNRDGKAPIMVKISVDGDDKAMG-TKLFVTPDLW--ENGKAKGKS 61
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
AEA E+N +++E+ A + Y R+ + +T E++++ + G +++ F N +
Sbjct: 62 AEANEINGQLKEVSARLTNHYHRILREEDFVTAEKLRNAFLGVGVMENCILKDFGNMNRE 121
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
V + +T KY HF+ FL K KRTD+ + ELT II +F+ +L
Sbjct: 122 FGAMVEKGQRAKSTYNKYLAVYNHFKTFLWEKKKRTDMAYKELTKEIITDFDKYLRVEKG 181
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
NT L ++T + G + DPF ++ TDRG+LT+EE++ L +
Sbjct: 182 LSANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEYSLEMQETDRGYLTEEELRTLANAVFV 241
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI--VELDGRKWIMTKRQKTNIATNILLLE 297
+ LVRD+FLF CFTGL+YID+ LT D I ++ DG +WI+T+R KT +++N+ L+E
Sbjct: 242 KKQTSLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLME 301
Query: 298 IPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I ++E+YR + + P+ SN N +LK+IA CGI K + FH++RH
Sbjct: 302 IAKELIERYRGLAGGDLVFPMPSNSVCNTHLKQIAKACGIHKEIGFHLSRH 352
>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Flavobacterium sp. MED217]
gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
blandensis MED217]
Length = 414
Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats.
Identities = 123/352 (34%), Positives = 197/352 (55%), Gaps = 5/352 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MK+ + ++F+L +NK G PI +R+ ++ +R S ++ + W+S +EK G+S
Sbjct: 1 MKNNYYALFHLIKRKVNKRGLAPIYLRLTVDGKRKE-HSISRRVDPRKWNSRQEKAMGNS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA+E+N I +R + I++ + +T+ + E G + +E+F++HN
Sbjct: 60 REAVEINTHISNLRHKLNQIHQTFIEHDKHITVNSLLKELKGENQQNKLALEVFKEHNEK 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+ +G + ++ Q+Y C H +QF+ +Y D + ++ I FE FL T C
Sbjct: 120 IDQLIGKDISASSAQRYWTCHNHVQQFINEEYDEEDYRLRDIDHNFIIKFEHFLKTKRNC 179
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
N++ K + K I + +++HDPF N + E +R FLT EEI L KE+
Sbjct: 180 NHNSALKYVNNFKKIVRIALANKWISHDPFINYKVKFEPVEREFLTQEEIDALWEKELHF 239
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIP 299
RL LVRD+F+FSC+TGLAY DV L++ +I + +DG KWI R KT ++I LL +
Sbjct: 240 ERLILVRDMFVFSCYTGLAYSDVEKLSKSDITIGIDGSKWIRIHRTKTGSRSSIPLLPVA 299
Query: 300 GMILEKYR---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL +Y V + +++PV+SNQK N +LKEIA +C I K LT H+ARH
Sbjct: 300 EQILARYENHPQVEESERVIPVLSNQKSNAFLKEIAIMCDISKPLTTHLARH 351
>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 204 bits (518), Expect = 8e-51, Method: Composition-based stats.
Identities = 116/349 (33%), Positives = 193/349 (55%), Gaps = 2/349 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M + + +YLR + +G PI+ RI + K + S S+ LWD++ + G S
Sbjct: 3 MSQELKVHYYLRHKELKNDGSAPIMGRITIGKSMVQF-SAKCSVQVSLWDTKSARATGKS 61
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
A E+NR +++ I + YK L E ++ E +K+ + G +++ +K++
Sbjct: 62 KVAAELNRILDQTTLSIHSHYKDLLAKKEKVSAEEVKNAFQGIVSGQETLIGYCDKYDKM 121
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+ ++G+ T+ + ++Y H ++FL++KY +D+ F L I F+ +L K
Sbjct: 122 LAARIGVNMTLESYKRYGISFNHVKRFLRAKYNLSDISFQALDYSFIEAFDFYLRVQLKF 181
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
+PNT I+ LK I G + +PF E +T +E+ ++ + S
Sbjct: 182 KPNTIIGIVGHLKIIVKRAANDGIITRNPFIGFSLEGEPLQPKSITGQELNKIMTTPLDS 241
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRKWIMTKRQKTNIATNILLLEIP 299
P LVRD+FLFS FTG+A+ D+ NLT +N+V+ DG WI +KR+KT ++ LLE+P
Sbjct: 242 PNRYLVRDMFLFSVFTGIAFSDIRNLTCNNLVQAEDGVWWIHSKRRKTGTEFHVPLLELP 301
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+EKYR + K+ K+ ++S K NG LK+IA +CGIK+++TFHMARH
Sbjct: 302 LQIIEKYRGLNKDGKMFVMLSCSKTNGNLKKIAKICGIKRNITFHMARH 350
>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 406
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 111/347 (31%), Positives = 198/347 (57%), Gaps = 2/347 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY+ + K+G PI+ R+ +N ++ S +I LWD++ + KG SA
Sbjct: 3 RSTFKVLFYVNGSK-EKDGIVPIMGRVTINGT-VAQFSCKQTIPKTLWDAKGNRAKGKSA 60
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA +N ++ I+A I+ Y+R+ +T E +++ Y G ++++ F+K ++
Sbjct: 61 EARNINLALDNIKAQIIKHYQRISDREAYVTAEMVRNAYQGVGSEYETLIKAFDKDCANF 120
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG +++ T + + + F+KS Y+RTD+ ELTP I F +L +
Sbjct: 121 LKRVGKDRSIGTYKVMVRARNYVAAFIKSFYRRTDMSMLELTPDFIKEFAAYLTAERGLK 180
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
T +LK + + +G + +PFA +R +LT++EIK ++ E +P
Sbjct: 181 NATIWLNCMWLKGVVMRAHYNGLIPRNPFAQFHISPNVKEREYLTEDEIKRIMAHEFDNP 240
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM 301
L LVRD+F+F+CFT L+++D+ LT D IVE++G KWI++KR KTN+ + LL+IP
Sbjct: 241 TLALVRDLFIFACFTALSFVDMKELTTDEIVEVNGEKWILSKRHKTNVPFQVKLLDIPLQ 300
Query: 302 ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+E+Y+ + +++ + I+ M LK++ CGI+K +++H ARH
Sbjct: 301 IIERYKYLSEDKLVFGKINYWTMCKQLKKVMAECGIEKQISYHCARH 347
>gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 411
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 122/351 (34%), Positives = 195/351 (55%), Gaps = 11/351 (3%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F++ + K G+ P+L+RI +N S+ LW++ K KG ++ +N
Sbjct: 9 LFFVLKTKLLKNGEAPVLMRITINGN-YDDARIQRSVPLNLWNAAKGCSKGRDRASVALN 67
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I E+ A L +K L + +T + I FG + +++ + ++ GI
Sbjct: 68 TYIAELHARALEKHKELVLEQALITPKLILKRVFGKDTEMRTLLGTMMEGIKEMETLAGI 127
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
+ T+ +Y+N + +QF+ S Y + ++ F ELTP IH F+++L T + NT +
Sbjct: 128 DYSPVTINRYKNVVKKLQQFIPSYYGKEEVTFHELTPEFIHAFDIYLKTEGRLCRNTIVR 187
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
+K K T ++ +PF + + TD FLT +E++ ++ K+ PRL+LVR
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETDPVFLTYDELQAVMKKKFTIPRLELVR 247
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWI------MTKRQKTNIATNILLLEIPG 300
DIF+F+CFTGLA+ DVA+L +++V+ + G WI + +R+K + +NI LL +P
Sbjct: 248 DIFVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISNIPLLPVPL 307
Query: 301 MILEKYR---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKYR K+ LPV+ NQKMN YLKEIAD CGIKK+LT H+ARH
Sbjct: 308 AILEKYREHPACIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARH 358
>gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
gi|149127796|gb|EDM19020.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
Length = 443
Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 106/351 (30%), Positives = 196/351 (55%), Gaps = 3/351 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLG--STGLSINAQLWDSEKEKVKG 58
MK++ + + Y++ N +K+G +P++ RI + + S+ + IN +LW++ ++ G
Sbjct: 1 MKTEMKVLLYIKRNGQDKDGFSPLMGRISIKGKANSIAQFACKFKINVRLWNATAQRCTG 60
Query: 59 HSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHN 118
S A NR+IE + + + L + +T E +++ + G ++T ++M+L+ +HN
Sbjct: 61 KSKVATMANREIERVLLLLQKRFNELSDMQDVVTAEEVRNVFQGQAETQDTIMKLYAEHN 120
Query: 119 SDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
SD ++VG+ + +T +Y N R +FLK +Y +D+ +L I F++++ T
Sbjct: 121 SDYALRVGVNRAASTFYQYRNTCRILGEFLKERYHVSDMPVKQLDENFIEAFDMYMRTTR 180
Query: 179 KCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEM 238
+ P T + LK++ + G + PF + +LT++E+ +
Sbjct: 181 RFMPRTILGHINRLKSVMMLAVFRGIIPFSPFKGYAPQKPVFKQMYLTEDELDRFANTTY 240
Query: 239 ASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRKWIMTKRQKTNIATNILLLE 297
+P + RD+FLFSC+TG+ Y D+ +LT N+V DG WI T+RQKT + L+E
Sbjct: 241 DTPNRNFTRDMFLFSCWTGICYCDMRSLTAANLVRADDGSLWIHTERQKTGTPECVRLME 300
Query: 298 IPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IP I+EKY+ + KLLP+++ + MN +LK+++ +CGI + ++FH ARH
Sbjct: 301 IPLKIVEKYKGMDSNGKLLPMLTKESMNRHLKKMSVMCGINRPISFHQARH 351
>gi|67940412|ref|ZP_00532834.1| Phage integrase [Chlorobium phaeobacteroides BS1]
gi|67913374|gb|EAM62800.1| Phage integrase [Chlorobium phaeobacteroides BS1]
Length = 412
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 124/330 (37%), Positives = 184/330 (55%), Gaps = 5/330 (1%)
Query: 23 PILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYK 82
PI IRI L+ +RL L ST +IN WDS KG S +A+ +N ++ +RA++ Y
Sbjct: 23 PINIRITLDAKRLEL-STNRNINPDNWDSGLGVAKGKSDDAIILNNYLDNLRANVHRQYN 81
Query: 83 RLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKR 142
L+ + LT+E IK G + +++ ++E HNS++ +V T + Y+
Sbjct: 82 ILESLGKPLTIESIKERLTGQGEKKYTLLFVYEYHNSEMNRRVNFDIAPGTYKMYKVSIN 141
Query: 143 HFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKH 202
F++ ++ R D+ L I +E++L T KC NT+ K L LK + +
Sbjct: 142 KLRDFIQYQFGRKDVLLESLNHAFITKYEVYLKTEQKCGINTTNKYLVHLKKVVNLSISN 201
Query: 203 GFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYID 262
+L+HDPF+ + +R FLT +E+ + KE+ PRL VRDIF+F C+TG A D
Sbjct: 202 EWLSHDPFSKHHCAYKPAERKFLTSDELYKIESKEITLPRLQKVRDIFVFCCYTGFAQCD 261
Query: 263 VANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYR---PVRKERKLLPV 318
V LT +I +DG KWI+ R+KT+ + I LL I+ KY+ + LLPV
Sbjct: 262 VEALTPSDISTGIDGEKWIIINRKKTDGRSPIPLLPQALAIVNKYKNDPETLAKGTLLPV 321
Query: 319 ISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
SNQ+MNGYLKEIAD+ GI K+LT H+ARH
Sbjct: 322 NSNQRMNGYLKEIADITGITKNLTMHLARH 351
>gi|67941825|ref|ZP_00533827.1| transposase [Chlorobium phaeobacteroides BS1]
gi|67911961|gb|EAM61808.1| transposase [Chlorobium phaeobacteroides BS1]
Length = 302
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 103/297 (34%), Positives = 177/297 (59%), Gaps = 1/297 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
++ F +FY++ K+G +PI +R+ +N +R G LSI W +K + G S
Sbjct: 3 RATFIVLFYIKRTKKLKDGTSPIYVRVTVNGQRTEFGMQ-LSILETAWSKDKGRAIGSSK 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
E+ +N IE + ++ + ++T +RIK+EYFG +D+ +++E+F +HN
Sbjct: 62 ESKMLNASIETAYLKLHEKRVEMERSGIEVTAQRIKNEYFGLNDSRKTILEVFSEHNDRC 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+ + I T ++Y +C H ++F+ Y + D+ +E+TP+ + +FE +L T KC
Sbjct: 122 KSLINIDFAKGTYERYVSCYDHVKRFMSFMYHKNDMPLAEVTPVFVRDFEFYLKTERKCA 181
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
NT+ K LK K I +G++ DPF+N +FHL++ D FL+++E+ L++K+MA
Sbjct: 182 HNTAIKYLKNFKKIVRIALANGWMKVDPFSNVKFHLDDVDMDFLSEQELTTLLNKQMAIE 241
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEI 298
RL V+DI+LF CFTGLA++DV +L ++I DG+ WI+ +RQKT NI +L++
Sbjct: 242 RLQQVKDIYLFCCFTGLAFVDVKSLVYNDIEVKDGKLWIIKRRQKTKNWCNIPMLDL 298
>gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
43184]
gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
43184]
Length = 411
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 122/351 (34%), Positives = 194/351 (55%), Gaps = 11/351 (3%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F++ + K G+ P+L+RI +N + + S+ LW++ K KG ++ +N
Sbjct: 9 LFFVLKTKLLKNGEAPVLMRITINGDYDDV-RIQRSVPLNLWNAAKGCSKGRDRASVALN 67
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I E+ A L +K L + +T + I FG + +++ + ++ GI
Sbjct: 68 AYIAELHARALEKHKELVLEQALITPKLILKRVFGKDTEMRTLLGTMREGIKEMETLAGI 127
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
+ T+ +Y+N + + + S Y + D+ F ELTP I F+++L T A NT +
Sbjct: 128 DYSPVTINRYKNVVKKLQLLIPSYYGKEDVTFHELTPEFIRAFDIYLKTEAGLCRNTIVR 187
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
+K K T ++ +PF + + TD FLT +E++ ++ K+ PRL+LVR
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETDPVFLTYDELQTVMKKKFTIPRLELVR 247
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTK-------RQKTNIATNILLLEIPG 300
D+F+F+CFTGLA+ DVA L+ +N+V+ + W + K R+K + +NI LL +P
Sbjct: 248 DVFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPL 307
Query: 301 MILEKYR--PV-RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKYR PV K+ LPV+ NQKMN YLKEIAD CGIKK+LT H+ARH
Sbjct: 308 AILEKYREHPVCIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARH 358
>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
43184]
gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
43184]
gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
Length = 454
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 121/351 (34%), Positives = 192/351 (54%), Gaps = 11/351 (3%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F++ + K G+ P+L+RI +N S+ LW++ K KG ++ +N
Sbjct: 52 LFFVLKTKLLKNGEAPVLMRITINGS-YDDARIQRSVPLNLWNAAKGCSKGRDRASIALN 110
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I E+ A L +K L + +T + I FG + +++ + ++ GI
Sbjct: 111 TYIAELHARALEKHKELVLEQALITPKLILKRVFGKDTEMRTLLGTMQDGIKEMETLTGI 170
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
+ T+ +Y+N + ++ + S Y + D+ F ELTP I F+++L T NT +
Sbjct: 171 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 230
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
+K K T ++ +PF + + TD FLT +E++ ++ K+ PRL+LVR
Sbjct: 231 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETDPVFLTYDELQAVMKKKFTIPRLELVR 290
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTK-------RQKTNIATNILLLEIPG 300
DIF+F+CFTGLA+ DVA L+ +N+V+ + W + K R+K + +NI LL +P
Sbjct: 291 DIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPL 350
Query: 301 MILEKYR--PV-RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKYR P+ K+ LPV+ NQKMN YLKEIAD CGIKK+LT H+ARH
Sbjct: 351 AILEKYREHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARH 401
>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 411
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 121/351 (34%), Positives = 192/351 (54%), Gaps = 11/351 (3%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F++ + K G+ P+L+RI +N S+ LW++ K KG ++ +N
Sbjct: 9 LFFVLKTKLLKNGEAPVLMRITINGS-YDDARIQRSVPLNLWNAAKGCSKGRDRASIALN 67
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I E+ A L +K L + +T + I FG + +++ + ++ GI
Sbjct: 68 TYIAELHARALEKHKELVLEQALITPKLILKRVFGKDTEMRTLLGTMQDGIKEMETLTGI 127
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
+ T+ +Y+N + ++ + S Y + D+ F ELTP I F+++L T NT +
Sbjct: 128 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 187
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
+K K T ++ +PF + + TD FLT +E++ ++ K+ PRL+LVR
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETDPVFLTYDELQAVMKKKFTIPRLELVR 247
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTK-------RQKTNIATNILLLEIPG 300
DIF+F+CFTGLA+ DVA L+ +N+V+ + W + K R+K + +NI LL +P
Sbjct: 248 DIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPL 307
Query: 301 MILEKYR--PV-RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKYR P+ K+ LPV+ NQKMN YLKEIAD CGIKK+LT H+ARH
Sbjct: 308 AILEKYREHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARH 358
>gi|34540845|ref|NP_905324.1| integrase [Porphyromonas gingivalis W83]
gi|34397159|gb|AAQ66223.1| integrase [Porphyromonas gingivalis W83]
Length = 407
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 109/347 (31%), Positives = 193/347 (55%), Gaps = 2/347 (0%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F+ +FY+ + KEG PI+ R+ +N ++ S +I +LWD + + KG S
Sbjct: 3 RSTFKVLFYVNGSK-EKEGIVPIMGRVTINGT-VAQFSCKRTIPKELWDVKGNRAKGKSR 60
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA+ N ++ I+A I+ Y+RL +T E +++ Y G ++++ F++ + +
Sbjct: 61 EAIATNLSLDNIKAQIIKHYQRLSDREAFVTAEMVRNAYQGLGSEYDTLLKAFDRDCASL 120
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VG +++ T + + + +F++ KY R+D+ ELTP I +F ++L TV R
Sbjct: 121 LKRVGKDRSMGTYKVMLRARNNTARFIRHKYNRSDMSMLELTPDFIRDFAVYLSTVKGNR 180
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
T +LK + + +G + +PFA +R FLT++E+K L+ E
Sbjct: 181 NATIWINCMWLKGVVMRAHFNGKIPRNPFAQFHVSPNTKERAFLTEDELKTLMSHEFKDS 240
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM 301
VRD+F+F+ FT L+++D+ LT D IVE++G KWI+ KR KT + + LL++P
Sbjct: 241 HSAFVRDLFVFASFTALSFVDLKELTIDEIVEVNGEKWILAKRHKTQVPYQVKLLDVPLQ 300
Query: 302 ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+++YRP +K+ + I+ + LK++ CGI K ++FH ARH
Sbjct: 301 IIDRYRPFQKDNSIFGDINYWTVCKKLKKVISECGITKDISFHCARH 347
>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 411
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 119/351 (33%), Positives = 193/351 (54%), Gaps = 11/351 (3%)
Query: 8 VFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVN 67
+F++ + K G+ P+L+RI +N + + S+ LW++ K KG ++ +N
Sbjct: 9 LFFVLKTKLLKNGEAPVLMRITINGDYDDV-RIQRSVPLNLWNAAKGCSKGRDRASVALN 67
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
I E+ A L +K L + +T + I FG + +++ + ++ GI
Sbjct: 68 AYIAELHARALEKHKELVLEQALITPKLILKRVFGKDTEMRTLLGTMREGIKEMETLAGI 127
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
+ T+ +Y+N + + + S Y + D+ F ELTP I F+++L T A NT +
Sbjct: 128 DYSPVTINRYKNVVKKLQLLIPSYYGKEDVTFHELTPEFIRAFDIYLKTEAGLCRNTIVR 187
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
+K K T ++ +PF + + TD FLT +E++ ++ K+ PRL+LVR
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETDPVFLTYDELQTVMKKKFTIPRLELVR 247
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTK-------RQKTNIATNILLLEIPG 300
D+F+F+CFTGLA+ DVA+L ++N+V+ + W + K R+K + +NI LL +P
Sbjct: 248 DVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVPL 307
Query: 301 MILEKYR---PVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILEKY+ K+ LPV+ NQKMN YLKEIAD CGIKK+LT H+ARH
Sbjct: 308 AILEKYKEHPTCIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARH 358
>gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
Length = 421
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 112/350 (32%), Positives = 195/350 (55%), Gaps = 3/350 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F +FYL+ + K+G P++ RI ++ + S +++N LWD++ ++ G S
Sbjct: 1 MKSTFSIIFYLKRQVVKKDGTVPVMGRITVDGTQAQF-SCKMTVNPNLWDTKGGRMTGKS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+ALEVNRK++++R I Y+ + ++ +++K+ + G ++M+++E+ +
Sbjct: 60 MQALEVNRKLDKMRVSISKHYQEIIDRDNFVSADKVKNAFLGLEYRCHTLMKVYEQSRDE 119
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
+ Q K+++T KY + +FL+S Y+ D+ EL+ I N+E FL +
Sbjct: 120 MEKQYKAGMKSLSTFTKYRIGCAYVGEFLQSHYRVKDIALKELSLPFITNYETFLRIDKQ 179
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
+ N++ ++ L+ + + +L DPF + E T R LT EEI L+ +
Sbjct: 180 LKINSAMVFVRNLRAMIFRAIDNEWLVKDPFRRYEYKNEETTREILTKEEIHLLMETPIT 239
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEI 298
+ LVRD++LF CFTGLA+ID+ NL E+NI D +WI+ RQKT +I LL+
Sbjct: 240 RKHMGLVRDLYLFCCFTGLAFIDLYNLKEENIKTFFDDGEWIVIHRQKTGTEADIKLLDY 299
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
P I+EK+R + K+ ++ PV + LK + CGI K L++H++RH
Sbjct: 300 PKQIMEKHRGLCKDGRVFPVPPYRSCLRSLKRLGKKCGITKPLSWHVSRH 349
>gi|83857491|ref|ZP_00951019.1| putative transposase [Croceibacter atlanticus HTCC2559]
gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
Length = 416
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 128/339 (37%), Positives = 188/339 (55%), Gaps = 13/339 (3%)
Query: 18 KEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRADI 77
K G P+ +RI +NK+R+ L S + A WD+ + KVKGHSA+A ++N I ++ +
Sbjct: 19 KNGLAPLYVRITVNKKRVYL-SLKRKVEATKWDTSQSKVKGHSADARQLNDYINQVNRRL 77
Query: 78 LTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKY 137
L ++K+L+ +T + IK+ Y G DT + ++ H +R I K TL+ Y
Sbjct: 78 LEVHKQLEDEQRVITAQAIKARYLGVDDTFKKLSDILTYHEDKMRT---ILKP-GTLKNY 133
Query: 138 ENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK--CRPNTST----KILKF 191
+ ++ ++FLK+K K D+ + I FE FL T RP S K L+
Sbjct: 134 KTTSKYLKKFLKTKMKTDDVFLKHINYSFITEFEHFLRTFKSKTHRPTPSNNGVMKHLER 193
Query: 192 LKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFL 251
LK + QK ++A +PFA +R FL + E++ LI L RD+F+
Sbjct: 194 LKKLMNLAQKLEWVAKEPFAKFSLKFTKVEREFLDEVEVQELIKFTSHRTALTQTRDVFI 253
Query: 252 FSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPGMILEKY-RPV 309
F+C+TGL++IDV NL++D+IV +DG WI T R+KT+ I LL IP +L +Y +
Sbjct: 254 FACYTGLSWIDVKNLSQDHIVRGIDGSNWIYTAREKTDTPVKIPLLPIPEKLLSRYAEKM 313
Query: 310 RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
LLPV SNQK N YLKEIA GI+K LTFH+ARH
Sbjct: 314 MDSELLLPVYSNQKTNKYLKEIAIELGIRKKLTFHVARH 352
>gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
Length = 411
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 191/358 (53%), Gaps = 13/358 (3%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+ + +F++ + K G+ PIL+RI +N + S+ +LW++ K KG
Sbjct: 3 QGTMKILFFVLKTKLLKNGEAPILMRITINGQ-YEETRIQRSVPLKLWNAAKGCSKGKDR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
+ E+N + E+ L YK L + T I FG + +++ + ++
Sbjct: 62 ASNELNSYLSELATRALEKYKELILEQAISTPSLILKRVFGKDTEMRTLLGAIRQEIKEM 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLT-VAKC 180
V I T+ +Y+N + E + + Y + D+ F ELTP I F+L L T V C
Sbjct: 122 EKVVNIDYAPVTINRYKNVLKKLENSIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLC 181
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
R NT + +K K IT G++ D F + + T FLT +E++ +++KE
Sbjct: 182 R-NTIVRYMKCFKKITNMALAKGWMKKDAFYGYKMEQDETAPVFLTYDELQTVMNKEFTI 240
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTK-------RQKTNIATNI 293
PRL LVRDIF+F+CFTGLA++DV+ L ++++V+ + W + K R+K + NI
Sbjct: 241 PRLALVRDIFIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNI 300
Query: 294 LLLEIPGMILEKYR--PV-RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
LL +P IL+KY PV K+ LPV NQKMN YLKEIAD CGIKK++T H+ARH
Sbjct: 301 PLLPVPLAILKKYENNPVCIKKGYCLPVPCNQKMNSYLKEIADFCGIKKNITTHVARH 358
>gi|53713277|ref|YP_099269.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216142|dbj|BAD48735.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 435
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 2/347 (0%)
Query: 3 SQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAE 62
S F +FY+ + K G P++ RI +N E S + +++ LWD++ ++KG S E
Sbjct: 12 STFAVIFYINKSKRKKNGLCPVMGRISVNAETAQF-SARIDVDSALWDAKTYRMKGKSRE 70
Query: 63 ALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVR 122
A +VNR+++ + I + L +T E +K+ +G +++ LF +HN +
Sbjct: 71 ANQVNRELDRLTESIEKYHAELLQQQGYVTAELVKNMLWGIGRKKDTLLSLFVEHNEEYA 130
Query: 123 VQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRP 182
+VG+ +T T Y H QFL++++ D+ +LT I F+ +L T +
Sbjct: 131 QKVGVNRTEETYSHYVVVYNHVRQFLQTRHHMKDIALKQLTHSFIEQFDFYLRTEKRHSA 190
Query: 183 NTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPR 242
NT LK I G L DPFA+ R +T +E++ L+ +AS
Sbjct: 191 NTIGGYTILLKKIIRRAINQGTLLRDPFADYRPEQPPQKCRHMTADELERLMATRIASKS 250
Query: 243 LDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPGM 301
L RD+F+F+ FTG++Y D+ NL+ +I + +G WI KRQKT ++ LL+IP
Sbjct: 251 LCHTRDMFVFATFTGISYADLCNLSISDISKSSNGTMWIHFKRQKTGSECHVRLLDIPKQ 310
Query: 302 ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I+EKY+P RK ++ ++ LK++A LCGI +++TFHMARH
Sbjct: 311 IIEKYKPERKGDRIFNMVGYSSTAANLKKVAKLCGIARNITFHMARH 357
>gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 411
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 188/358 (52%), Gaps = 13/358 (3%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+ + +F++ + K G+ PIL+RI +N + S+ +LW++ K KG
Sbjct: 3 QGTMKILFFVLKTKLLKNGEAPILMRITINGQ-YEETRIQRSVPLKLWNAAKGCSKGKDR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
+ E+N + E+ L YK L + T I FG + +++ + ++
Sbjct: 62 ASNELNSYLSELATRALEKYKELILEQAISTPSLILKRVFGKDTEMRTLLGTIRQEIKEM 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLT-VAKC 180
V I T+ +Y+N + E + + Y + D+ F ELTP I F+L L T V C
Sbjct: 122 EKVVNIDYAPVTINRYKNVLKKLENSIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLC 181
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
R NT + +K K IT G++ D F + + TD FLT +E++ +++KE
Sbjct: 182 R-NTIVRYMKCFKKITNMALAKGWMKKDAFYGYKMEQDETDPVFLTYDELQTVMNKEFTI 240
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTK-------RQKTNIATNI 293
PRL LVRDIF+F+CFTGLA+ DV+ L ++++V+ + W + K R K + NI
Sbjct: 241 PRLVLVRDIFIFACFTGLAFADVSTLKKEDLVQDNNGDWWIRKGRIKLMHRHKASSICNI 300
Query: 294 LLLEIPGMILEKYR--PV-RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
LL +P IL+KY PV K+ LPV NQKMN YLKEIAD CGIKK++T H RH
Sbjct: 301 PLLPVPLAILKKYENNPVCIKKGCCLPVPCNQKMNSYLKEIADFCGIKKNITTHAGRH 358
>gi|150004653|ref|YP_001299397.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|149933077|gb|ABR39775.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 312
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 105/300 (35%), Positives = 169/300 (56%), Gaps = 3/300 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
MKS F ++YL+ + K+G P++ RI ++ + S L+I+ +LWD++ +V G S
Sbjct: 1 MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQF-SCKLTIDPKLWDTKGGRVTGRS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
ALE NR ++++R I Y+ + +T E++K+ + G ++M++F++HN D
Sbjct: 60 TAALETNRMLDKMRVRINKHYQEIMERDNFVTAEKVKNAFLGLEHRYHTLMQVFQQHNED 119
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
QV K TL KY+ +H ++FL +Y D+ ELTP I +FE+FL T
Sbjct: 120 YAKQVEAGMKAKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTDKH 179
Query: 180 CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMA 239
C NT + L+T+ + +L DPF E T R FLT +EI+ L+ ++
Sbjct: 180 CCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKDEIRLLMEGKLK 239
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
+ + +L RD++LF FTGL++ D+ NLTE+NI D +WI RQKT + +NI LL+I
Sbjct: 240 NAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDI 299
>gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
Length = 447
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 185/360 (51%), Gaps = 13/360 (3%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEK----- 55
M+S F+ +FY+ + K G+ P++ + L+ ++S STGL I LWD++K K
Sbjct: 1 MRSTFKLLFYINRQKVKKNGRCPVMGHVTLDG-KVSQYSTGLEIEPDLWDAKKGKAFADG 59
Query: 56 -----VKGHSAEAL-EVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTS 109
+ G L +N +E + + YK+ + ++ E IK+ G SD +
Sbjct: 60 RKTGNITGEKRNELNRLNSLLEALEEKAKSAYKKNVDSYGFVSAEIIKNAVTGKSDVKET 119
Query: 110 VMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHN 169
++ LF++HN + +VGI +T + +Y ++H FLK KY D+ LT + +
Sbjct: 120 LLSLFDEHNEEYAKRVGIDRTRHSYVRYLTTRKHISNFLKFKYDLEDIPLRSLTMKFMTD 179
Query: 170 FELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEE 229
F + TV + + + L L +T K L DPFA + + L E+
Sbjct: 180 FTFYFSTVLQLKVSAYNDYLILLHKMTRLALKKHILKRDPFAGHKIEKVPVNHRHLNREQ 239
Query: 230 IKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIV-ELDGRKWIMTKRQKTN 288
+ L++ + + RL RD+F+FS FTG+ D+ANLTEDNI+ + DG KWI RQKT
Sbjct: 240 FEKLLNARLPTYRLCHTRDLFVFSVFTGIGRADLANLTEDNIITKEDGSKWIHIARQKTK 299
Query: 289 IATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+I LL+IP I+EKY+ K+ +L V + LK IA+ C + HLTF+ ARH
Sbjct: 300 AECHIKLLDIPLRIIEKYKGEGKDGRLFYVPQTCNLCRSLKIIAEQCNLGCHLTFYQARH 359
>gi|86130576|ref|ZP_01049176.1| putative transposase [Cellulophaga sp. MED134]
gi|85819251|gb|EAQ40410.1| putative transposase [Dokdonia donghaensis MED134]
Length = 417
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 116/339 (34%), Positives = 185/339 (54%), Gaps = 15/339 (4%)
Query: 20 GKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILT 79
G+ + RI +N++R ++ S + +LWD +K + KG SAEA ++N+ I++ +
Sbjct: 21 GEALVYARITVNQKRANI-SLKRRVPVKLWDPKKNRSKGTSAEARQLNQYIDQTYTKLFQ 79
Query: 80 IYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYEN 139
IY+ L + +T + IK+ Y G ++ S+ L H+ + T T++ +
Sbjct: 80 IYQDLKFQEKLITAKLIKAHYTGENEQSKSLQNLIAYHSKKIEN----TLAKGTIRNFGV 135
Query: 140 CKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTV------AKCRPNTSTKILKFLK 193
+ + +FL K TD+ EL + +FE +L NT K ++ L+
Sbjct: 136 TENYLNKFLNKVKKTTDIYLKELDYKFLCDFENYLANYWPVGHPKALSQNTIMKHIQRLR 195
Query: 194 TITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFS 253
+ ++ DPF + E R FL++ E+ N+ E + RL+ VRD+F+FS
Sbjct: 196 KMVTLAYHMEWIPRDPFVRWKPVYEKKQREFLSENELLNMETFEFSIERLERVRDLFVFS 255
Query: 254 CFTGLAYIDVANLTEDNIV-ELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYR--PVR 310
C+TG++Y+D+ NLTE+N+V +DG WI TKRQKT A + LL I+ KY P+
Sbjct: 256 CYTGISYVDIMNLTEENLVLGMDGGNWIYTKRQKTKSAVKVPLLGKAEEIISKYERHPMT 315
Query: 311 K-ERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ LLPVI+N+K+N YLKE+A GIKK+LTFHMARH
Sbjct: 316 EITGTLLPVITNEKLNVYLKEVAHFVGIKKNLTFHMARH 354
>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Flavobacterium sp. MED217]
gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
blandensis MED217]
Length = 422
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 119/342 (34%), Positives = 193/342 (56%), Gaps = 16/342 (4%)
Query: 17 NKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRAD 76
NK G+ I RI ++++RLS+ S ++ +LWDS+ ++V G+S A ++N+ ++ ++
Sbjct: 18 NKNGEVLIYARITMDQKRLSI-SLKRNVPLELWDSQSKRVLGNSVMAKQLNQYLDLTKSQ 76
Query: 77 ILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQK 136
+ Y L + LT + IK + G + ++++L + H+ ++ T T++
Sbjct: 77 LYQSYMELKAADKVLTAQMIKDYFMGDDKSTKTLVQLIDYHSEKIKG----TLAKGTIRN 132
Query: 137 YENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTV-AKCRP-----NTSTKILK 190
++ + + +FLKS K D+ S L I +FE FL+ K P NT K ++
Sbjct: 133 FQITENYVLKFLKSN-KLEDIFLSRLDYKFICDFESFLVQYYPKGHPRAMSHNTVMKHIQ 191
Query: 191 FLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIF 250
L+ + +L DPF + E TDR FL++ E+ NL E RL+ VRD+F
Sbjct: 192 RLRKMIRLAYHLEWLDKDPFRRWKTTFEKTDREFLSEHELSNLATYEFPLERLERVRDLF 251
Query: 251 LFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPGMILEKYR-- 307
LFSC+TG++Y D+ LT +NI + D +KWI+T RQKTN + L+ ++EKYR
Sbjct: 252 LFSCYTGISYADLNKLTPNNIWKGEDDKKWIVTNRQKTNTRVKVPLMPTALRLIEKYREH 311
Query: 308 PVRK-ERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
P+ + L P I+N++ N YLKEIA+ CG+ K+LTFHMARH
Sbjct: 312 PLTEVSGTLFPPITNERANLYLKEIAEACGLTKNLTFHMARH 353
>gi|146302080|ref|YP_001196671.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
gi|146156498|gb|ABQ07352.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
Length = 435
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 110/303 (36%), Positives = 163/303 (53%), Gaps = 4/303 (1%)
Query: 49 WDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLT 108
WD E+ G +A +N ++ + I I + + + +T E+I G +
Sbjct: 48 WDQRFERAVGSKEDAKSLNFFLDSLTLKINEIKTEMMYSGKTITAEKIMDGVLGKTAPKI 107
Query: 109 SVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIH 168
V+E F+KHN ++ +G TL ++ K H F+K K K+ DL+F++L +
Sbjct: 108 KVLEEFQKHNDEMEALLGKGYAKGTLDRFTITKNHLTAFIKFKLKKHDLEFADLNLEFVK 167
Query: 169 NFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDE 228
+FE +L TV C NT+ K + K I I + DPF N + + LT +
Sbjct: 168 DFEFYLRTVRDCSNNTTLKYIANFKKIVIRAIDKELITKDPFKNFKGRKTKLVKKPLTAQ 227
Query: 229 EIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKT 287
E+ L + RL++VRD+F+F C+TGLAYID L + +I E +DG WIM++RQKT
Sbjct: 228 ELYELESHYFTTDRLNVVRDVFVFQCYTGLAYIDAYQLKKTDIKEGIDGNLWIMSERQKT 287
Query: 288 NIATNILLLEIPGMILEKYR--PVRKER-KLLPVISNQKMNGYLKEIADLCGIKKHLTFH 344
N + N+ LL I+EKY+ P+ +R +LPV SNQKMN YLKE+A LCG L H
Sbjct: 288 NSSFNVPLLPQALKIVEKYKEHPLCIQRGTVLPVSSNQKMNEYLKEVAVLCGFPFTLNTH 347
Query: 345 MAR 347
MAR
Sbjct: 348 MAR 350
>gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
Length = 409
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 181/353 (51%), Gaps = 7/353 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FY ++ + K GK PI+ RI +N + S+ +++ LWD + + KG S
Sbjct: 1 MRSTFKVLFYTKNQSV-KNGKAPIMGRITVNGTQAGF-SSKRTVSLSLWDVKANRAKGKS 58
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA +N++++ I+A I Y+ + +T +++ + Y G S+ ++M LF +
Sbjct: 59 EEARTLNQELDNIKAQITKHYQYICDHDSFVTAKKVYNRYAGFSEECHTLMVLFREQIES 118
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+ ++G K +T + + F+K++ D+ EL I ++ ++L A
Sbjct: 119 YKEKIGKGKAESTYRGLVADYKSLLLFMKTQKNIEDIAIDELEKSFIEDYYTWMLGTAGN 178
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
T+ + +K + Q+ G+L PF + E R FLT+EE++ +IH ++
Sbjct: 179 ANATAFNRVNTMKWLMYIAQEKGWLRVHPFTSFECKPEYKKRSFLTEEELQRIIHVDLKY 238
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIP 299
R +RD+FLF CFTGLAY D+ +T DNI + DG W+M R KT +A + LL I
Sbjct: 239 KRQRAMRDMFLFMCFTGLAYADLRAITYDNIHTDSDGGTWLMGNRIKTGVAYVVKLLPIA 298
Query: 300 GMILEKYRPVRKERK----LLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKYR V +++ + PV M L+ I C +T H+ RH
Sbjct: 299 IELIEKYRGVDEKKDSPDCVFPVGEYNTMFLSLRIIGKKCDCHTEVTPHIGRH 351
>gi|150007408|ref|YP_001302151.1| putative phage integrase [Parabacteroides distasonis ATCC 8503]
gi|149935832|gb|ABR42529.1| putative phage integrase [Parabacteroides distasonis ATCC 8503]
Length = 368
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 105/356 (29%), Positives = 178/356 (50%), Gaps = 7/356 (1%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S FR +FY ++ I K G+ P++ RI +N S S + LWD++ KG S
Sbjct: 1 MRSTFRVLFYTKNQAI-KNGRVPVMGRITVNGTTASF-SCKRDVPLALWDAKGNCAKGKS 58
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA +NR++E I+A I Y+ L LT +++ Y G + + S+ME+F D
Sbjct: 59 EEARRLNRELENIKAQIGKHYQYLSDHDSFLTAKKVYDRYNGFGEEIHSLMEIFNIQIRD 118
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+ Q+G TK +T + + + +LK K D+ L I N+ ++L+V
Sbjct: 119 YKRQIGKTKAQSTYRGLVDEYKCLSCYLKDKLGTEDIPLMSLDMDFIKNYYNWMLSVRGL 178
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
+T+ + + LK + G++ PF E R FL++E+++ +I +++
Sbjct: 179 AKSTAFERVNTLKWLMYLAMDEGWIHKHPFKKFVCKPEYKKRPFLSEEDLQRVISVKLSY 238
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIP 299
R +RD+F+F CF+GLA+ D+ L+ N+ + DG W++ R KT + LL I
Sbjct: 239 RRQQAIRDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVKLLPIA 298
Query: 300 GMILEKYRPVRKER----KLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRDF 351
++EKYR V + + ++ PV M LK I + G ++ H+ RH DF
Sbjct: 299 VELIEKYRGVNEFKVSPDRVFPVGEIGSMEDSLKRIGEKAGCSVRVSPHVGRHSDF 354
>gi|60681034|ref|YP_211178.1| putative integrase [Bacteroides fragilis NCTC 9343]
gi|60492468|emb|CAH07238.1| putative integrase [Bacteroides fragilis NCTC 9343]
Length = 240
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 2/238 (0%)
Query: 129 KTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKI 188
K+V T +KY H + FL + D+ ELT I +F+++L T C NT
Sbjct: 2 KSVKTYEKYVTVYNHLKDFLYQRLHLKDIALKELTLAFIKDFDMYLRTDRHCCNNTVWIY 61
Query: 189 LKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRD 248
L+T+ +G+ DPF E T R FL +EI L+ M + + +L+RD
Sbjct: 62 TAPLRTMVNVAIDNGWPTRDPFRKYEIEKEETARTFLNKDEIARLLDTLMKNVKQELIRD 121
Query: 249 IFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYR 307
+FLF FTGLA+ D+ NL+E+N+ D R WI RQKTN+ +NI LL+IP ++ KYR
Sbjct: 122 LFLFCTFTGLAFADLYNLSEENLRTYFDARLWINIPRQKTNVVSNIRLLDIPHRLINKYR 181
Query: 308 PVRKERKLLPVISNQK-MNGYLKEIADLCGIKKHLTFHMARHRDFYKRQIINRLNCLS 364
+ + K+ PV S Q + IA CG KHLT+H+ RHR FY N L +S
Sbjct: 182 DLATDGKVFPVPSYQVCLYNIQHPIAKRCGTTKHLTWHVRRHRKFYFSLKFNSLQNIS 239
>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 409
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 12/352 (3%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI +N+ G LS +LW+ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSGPDKSGKAPIMGRITVNRTMAQFGCK-LSCTPELWNPRESRLNGKSKEA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E+N KIE++ + + L D +K+ + G+ +T ++M + + D++
Sbjct: 64 VEINAKIEKLLLAVNNAFDNLVNRKVDFDATDVKNLFQGSMETQMTLMRMTDVVCDDLKA 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
++GI + T Y + +F+++KYK DL F +LT IH+++ F +
Sbjct: 124 RIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFGQLTEQFIHDYQSFATEEKGYAID 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRFHL----ENTDRGFLTDEEIKNLIHKEMA 239
T L LK I K G+ D + F L E T R L+ E + + E+
Sbjct: 184 TVRHHLAILKKICRLAYKDGYA--DRIHFQHFTLPKKTETTPRA-LSRESFEKIRDVEIP 240
Query: 240 SPRLD--LVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLL 296
+ R L RD+FLF C+TG+ Y DV ++T +N+ + DG W+ +R+K + + LL
Sbjct: 241 AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLL 300
Query: 297 EIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKY ++ L P++ + ++K +A L GIK L +H ARH
Sbjct: 301 PEAIALIEKYHSEDRD-TLFPLLHWSNLRRHMKALAALAGIKDDLCYHQARH 351
>gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
Length = 409
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 104/355 (29%), Positives = 180/355 (50%), Gaps = 18/355 (5%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + + K GK PI+ RI +N+ G LS +LW+ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSGLGKSGKAPIMGRITVNRTMAQFGCK-LSCTPELWNPRESRLNGKSREA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVE---DLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+E N KI+++ +L + D VE D +K + G+ +T ++M++ + D
Sbjct: 64 VETNAKIDKL---LLAVNIAFDNLVERKIDFDATDVKDLFQGSMETQMTLMKMTDVVCDD 120
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
++ ++GI + +T Y + +F+K +YK DL F +LT IH+++ F+
Sbjct: 121 IKARIGIDRAKSTYPGYHYMRLALGEFIKHQYKVKDLAFGQLTEQFIHDYQTFVTEDKGQ 180
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHL----ENTDRGFLTDEEIKNLIHK 236
+T+ L LK I K G D + F L E T R L+ E + +
Sbjct: 181 AIDTARHYLAILKKICRLAYKEGHA--DKIHFQHFTLPKKTETTPRA-LSRESFEKIRDV 237
Query: 237 EMASPRLD--LVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNI 293
E+ + R L RD+FLF C+TG++Y DV ++T N+ + DG W+ +R+K + ++
Sbjct: 238 EIPAYRKSHMLARDMFLFGCYTGVSYADVVSITHANLQTDGDGALWLKYRRKKNELRASV 297
Query: 294 LLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
LL ++ KY +E L P++ + ++K +A L GIK L +H ARH
Sbjct: 298 KLLPEAIALINKYSSEDRE-TLFPLLRWPNLRRHMKALAALAGIKDDLCYHQARH 351
>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
Length = 409
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 103/360 (28%), Positives = 184/360 (51%), Gaps = 28/360 (7%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI +N+ + S LS LW+ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSRPDKSGKAPIMGRITVNRSMVQF-SCKLSCTPDLWNPRESRLNGKSNEA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVE---DLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+EVN K++++ +L+I+ D VE D E +K+ + G+ +T +++ + + +
Sbjct: 64 VEVNAKLDKL---LLSIHAAFDTLVERKADFDAEAVKNLFQGSLETQMTLLAMTDIVCEE 120
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+R ++GI + T Y +R +F++ K+ D+ F +LT IH+++ F++
Sbjct: 121 LRKRIGIDRAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQFFVVDDKGL 180
Query: 181 RPNTSTKILKFLKTITIYGQKHG-----FLAHDPFANKRFHLENTDRGFLTD--EEIKNL 233
TS L +K + K G F AH + E T + + E+I++L
Sbjct: 181 TIETSRHYLAIIKKVCRKAYKEGYADKCFFAHFSLPKQE---EKTPKALSRESFEKIRDL 237
Query: 234 IHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATN 292
+ E S + L RD+FLF+C+TG +Y D ++T DN+ D G W+ +R+K +
Sbjct: 238 VIPEHRSSHI-LARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQAC 296
Query: 293 ILLLEIPGMILEKY----RPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ LL ++EKY RP L P++ + + +K +A L IK+ LT+H RH
Sbjct: 297 VKLLPEALELIEKYNDDTRPT-----LFPMLYHPNLRRLMKCLAVLADIKEDLTYHAGRH 351
>gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
Length = 409
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 8/350 (2%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI LN+ ++ S LS LW++ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSEPDKTGKAPIMGRITLNRT-MAQFSCKLSCTPGLWNARESRLNGKSREA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E N KIE + + + + L D ++ + G + ++++L ++HN +++
Sbjct: 64 VETNEKIERLLLAVHSAFNSLMERKRDFDAAAVRDMFQGNAGMQMTLLKLLDRHNGEMKA 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
+VG+ + + TL Y R +F+K+K+K DL F +L I +++ F+L +
Sbjct: 124 RVGVDRALTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFIRDYQDFILLEKGYAVD 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRF--HLENTDRGFLTDEEIKNLIHKEMASP 241
T L LK I K G F + + E T + L+ E + L E+
Sbjct: 184 TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKA-LSRENFEKLRDLEIPEK 242
Query: 242 RLD--LVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEI 298
R + RD+FLF+C+TG AY D ++T N+ D G W+ +R+KT+ + LL
Sbjct: 243 RRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPE 302
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKYR +E L P + +K + + G+ + L +HM RH
Sbjct: 303 AVALIEKYRDDTRE-TLFPPQDYHTLRANMKSLRLMAGLSQDLVYHMGRH 351
>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 409
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 8/350 (2%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI LN+ ++ S LS LW++ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSEPDKTGKAPIMGRITLNRT-MAQFSCKLSCTPGLWNARESRLNGKSREA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E N KIE + + + + L D ++ + G + ++++L ++HN +++
Sbjct: 64 VETNEKIERLLLAVHSAFNSLMERKRDFDAAAVRDMFQGNAGMQMTLLKLLDRHNGEMKA 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
+VG+ + TL Y R +F+K+K+K DL F +L I +++ F+L +
Sbjct: 124 RVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFIRDYQDFILLEKGYAVD 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRF--HLENTDRGFLTDEEIKNLIHKEMASP 241
T L LK I K G F + + E T + L+ E ++ L E+
Sbjct: 184 TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKA-LSRENLEKLRDLEIPEK 242
Query: 242 RLD--LVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEI 298
R + RD+FLF+C+TG AY D ++T N+ D G W+ +R+KT+ + LL
Sbjct: 243 RRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPE 302
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKYR +E L P + +K + + G+ + L +HM RH
Sbjct: 303 AVALIEKYRDDTRE-TLFPPQDYHTLRANMKSLRLMAGLSQDLVYHMGRH 351
>gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
Length = 409
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 6/349 (1%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI LN+ + S LS LW++ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSEPDKTGKAPIMGRITLNRTMVQF-SCKLSCTPGLWNARESRLNGKSREA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E N KIE + + + + L +D ++ + G + ++++L ++HN +++
Sbjct: 64 VETNEKIERLLLAVHSAFNSLMERKKDFDAAAVRDMFQGNAGMQMTLLKLLDRHNEEMKT 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
+VG+ + T+ Y +R +F+K+++K +DL F +L I +++ F L +
Sbjct: 124 RVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAME 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRF-HLENTDRGFLTDEEIKNLIHKEMASPR 242
T L LK I K G F + + + T L+ E + L E+ R
Sbjct: 184 TVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEIPEKR 243
Query: 243 LD--LVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEIP 299
+ RD+FLF+C+TG AY D ++T +N+ D G W+ +R+KT+ + LL
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEA 303
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKYR + L P + +K + + G+ + L +HM RH
Sbjct: 304 LALIEKYRDDTRT-TLFPPQDYHTLRANMKSLRLMAGLSQDLVYHMGRH 351
>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 409
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 173/350 (49%), Gaps = 8/350 (2%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI LN+ ++ S LS LW++ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSEPDKTGKAPIMGRITLNRT-MAQFSCKLSCTPGLWNARESRLNGKSREA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E N KIE + + + + L D ++ + G + ++++L ++HN +++
Sbjct: 64 VETNEKIERLLLAVHSAFNSLMERKRDFDAAAVRDMFQGNAGMQMTLLKLLDRHNGEMKA 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
+VG+ + TL Y R +F+K+K+K DL F +L I +++ F+L +
Sbjct: 124 RVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFIRDYQDFILLEKGYAVD 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRF--HLENTDRGFLTDEEIKNLIHKEMASP 241
T L LK I K G F + + E T + L+ E + L E+
Sbjct: 184 TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKA-LSRENFEKLRDLEIPEK 242
Query: 242 RLD--LVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEI 298
R + RD+FLF+C+TG AY D ++T N+ D G W+ +R+KT+ + LL
Sbjct: 243 RRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPE 302
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKYR +E L P + +K + + G+ + L +HM RH
Sbjct: 303 AVALIEKYRDDTRE-TLFPPQDYHTLRANMKSLRLMAGLSQDLVYHMGRH 351
>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 409
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 179/350 (51%), Gaps = 8/350 (2%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK PI+ RI LN+ ++ S LS +LW++ + ++ G S +A
Sbjct: 5 KFKVLLYLKKSEPDKNGKAPIMGRITLNRT-MAQFSCKLSCTPELWNARESRLNGKSRKA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E N KIE + + + + L +D ++ + G + ++++L ++HN +++
Sbjct: 64 VETNEKIERLLLAVHSAFNSLMERKKDFDAAAVRDMFQGNAGIQMTLLKLLDRHNGEMKA 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
+VG+ + TL Y R +F+K+K+K +DL F +L I +++ F+L +
Sbjct: 124 RVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFIRDYQDFILMEKGHAVD 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRF--HLENTDRGFLTDEEIKNLIHKEMASP 241
T L LK I K G F + + E+T + L+ E + L E+
Sbjct: 184 TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKA-LSRENFEKLRDLEIPEK 242
Query: 242 RLD--LVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
R + RD+FLF+C+TG AY DV ++T +N+ + + W+ +R+KTN + LL
Sbjct: 243 RRSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPE 302
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+++EKYR + L P + +K + + G+ + L +H ARH
Sbjct: 303 ALVLIEKYRDDAR-MTLFPPQDYHTLRANMKSLRLMAGLSQDLVYHTARH 351
>gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
BAL38]
gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
BAL38]
Length = 408
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 189/357 (52%), Gaps = 20/357 (5%)
Query: 6 RSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLW---DSEKEKVKGHSAE 62
+++ Y++ + G PI I++ N++ ++ STG I+ + W D+ ++ ++ +
Sbjct: 3 KTIIYIKKDKARSNGDCPIYIKVVFNRKSTTI-STGKYISEERWKQSDNLRKLLRQDKEK 61
Query: 63 ALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGT--SDTLTSVMELFEKHNSD 120
L+ ++ +I I+ +++ ED+T+E K+ G ++T S++++ ++HN
Sbjct: 62 TLK--DFLDLFILNIEKIHNQIERFQEDVTIEEFKNRIIGKQITETSPSLLKIIDEHNLH 119
Query: 121 VRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
V I ++ A+LQKY + F Y D+ ++ I+N E +L +
Sbjct: 120 FSKLVKIGERSKASLQKYTRVMELIKIFNNKTYGSNDVLIDKINSAYIYNLESYLKFESD 179
Query: 180 ------CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNL 233
+ N+ K K LKTI Y + + +PF ++ + FLT EE++++
Sbjct: 180 YKGKTGIKNNSVVKYFKNLKTICNYAIRMELIDKNPFNIYNGKIKVEEATFLTQEELESI 239
Query: 234 IHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRK--WIMTKRQKTNIAT 291
+K RL+ V+DIFLFSC+TG A +D LT NI++ D K WI RQKTN
Sbjct: 240 ENKTFKIDRLERVKDIFLFSCYTGYAPVDAIKLTRKNIIQ-DTEKTLWIKANRQKTNTKA 298
Query: 292 NILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
N+ +L I+ KY+ LLP ISNQKMN YLKEIAD+ G++K LT+++ARH
Sbjct: 299 NVPILPPVLKIINKYQFYGD--TLLPKISNQKMNAYLKEIADIIGLEKKLTWYVARH 353
>gi|29349417|ref|NP_812920.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341326|gb|AAO79114.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 370
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 108/378 (28%), Positives = 187/378 (49%), Gaps = 30/378 (7%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
K F +F++R N E +P+ R+ ++ +R + T L + ++ W + +K G +A
Sbjct: 5 KQTFNVLFWIRKGRTN-EKMSPLSCRVTISGQRYEI-PTKLHLRSESWSAVAQKSLGKTA 62
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEY------FGTSDTLTSVMELFE 115
EVNR IE+++ I ++ L +E K + F T TL E+ E
Sbjct: 63 NDKEVNRYIEDLKITIEDTIAKIRQKSYPLNIENFKLMFQTQDNEFSTISTLFDYHEIME 122
Query: 116 KHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLL 175
K N +G Y K+H F++ KY +D + + ++ F +L
Sbjct: 123 KKNLRTSTFIG----------YHVTKKHLLNFIRIKYHVSDYDLAAVDKAFVYEFYAYLQ 172
Query: 176 TVAK-----CRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEI 230
+ C N + K ++ K + ++ +++ +P +RGFL+++E+
Sbjct: 173 GYRREGDTVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLSEKEL 232
Query: 231 KNLIHKEMASP-RLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTN 288
K+L +E+ P L +VRD+F+F+ +TGL+Y+D+ NLT +NI V +D W+ RQKT+
Sbjct: 233 KSL--EEVPLPANLSIVRDVFIFAVYTGLSYVDIENLTNENINVGIDKSLWLSYYRQKTD 290
Query: 289 IATNILLLEIPGMILEKYRPV---RKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHM 345
I + LL+ IL++Y ++ + PV NQ MN YLK++A G+ K++TFH
Sbjct: 291 IHAILPLLQPAVNILKRYEAYHEGKRNNHIFPVPLNQVMNRYLKKVAKQAGVDKNITFHC 350
Query: 346 ARHRDFYKRQIINRLNCL 363
ARH + +NRL L
Sbjct: 351 ARHIELPLSLNLNRLQRL 368
>gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 410
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 100/352 (28%), Positives = 176/352 (50%), Gaps = 12/352 (3%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + ++K GK PI+ RI +N+ ++ S LS LW+ +++G S EA
Sbjct: 5 KFKVLLYLKKSGMDKNGKAPIMGRITVNRT-MAQFSCKLSCTPSLWNPRASRLEGKSKEA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVE---DLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+E N+ I ++ +L+I K DV VE D + +K G+ T T+++ ++H S+
Sbjct: 64 VETNKDIGQL---LLSIQKAFDVLVEKRTDFEAKDVKEALQGSVKTQTTLLSFVDEHISE 120
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+ GI + +++ Y +++ +F+ KY+ TDL F +LT I +F +LL
Sbjct: 121 LSTHEGIDMSKSSVWTYRKIRKNLAEFIGEKYRLTDLAFGQLTEPFISDFHHYLLDEKGF 180
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLEN--TDRGFLTDEEIK-NLIHKE 237
T T + K + + G + FA+ R T + + IK +
Sbjct: 181 SSGTITIYVSLFKKMCRIAFERGLCKNLLFAHYRVGTPKVMTPKALSMSDFIKIRDVELP 240
Query: 238 MASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRKWIMTKRQKTNIATNILLL 296
PRL + RD+FLF+C+ G A+ID ++T+ N+ L DG KW++ R+KT + LL
Sbjct: 241 EDKPRLSVSRDLFLFACYAGTAFIDTVSITKANVKVLEDGDKWLVYNRKKTGTLARVKLL 300
Query: 297 EIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++ KY ++ L P++S ++ L I L K ++H RH
Sbjct: 301 PEALELMAKYEDEARD-TLFPLLSTNRVRIDLITICKLAETSKTYSYHSGRH 351
>gi|154492975|ref|ZP_02032601.1| hypothetical protein PARMER_02617 [Parabacteroides merdae ATCC
43184]
gi|154087280|gb|EDN86325.1| hypothetical protein PARMER_02617 [Parabacteroides merdae ATCC
43184]
Length = 356
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 176/352 (50%), Gaps = 6/352 (1%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + +K GK P++ RI LN+ ++ S LS LW++ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSEPDKTGKAPVMGRITLNRT-MAQFSCKLSCTPGLWNARESRLNGKSREA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+E N KIE + + + + L +D ++ + G + ++++L ++HN +++
Sbjct: 64 VETNEKIERLLLAVHSAFNSLMERKKDFDAAAVRDMFQGNAGMQMTLLKLLDRHNEEMKT 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
+VG+ + T+ Y +R +F+K+++K +DL F +L I +++ F L +
Sbjct: 124 RVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAME 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRF-HLENTDRGFLTDEEIKNLIHKEMASPR 242
T L LK I K G F + + + T L+ E + L E+ R
Sbjct: 184 TVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTLKALSRENFEKLRDLEIPEKR 243
Query: 243 LD--LVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEIP 299
+ RD+FLF+C+TG AY D ++T +N+ D G W+ +R+KT+ + LL
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFTDDEGSLWLKYRRKKTDYLGRVKLLPEA 303
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRDF 351
++EKYR + L P + +K + + G+ + L +H AR+ +F
Sbjct: 304 LALIEKYRDDTRT-TLFPPQDYHTLRANMKSLRLMVGLSQDLVYHTARYLNF 354
>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 412
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 104/361 (28%), Positives = 174/361 (48%), Gaps = 27/361 (7%)
Query: 4 QFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEA 63
+F+ + YL+ + ++K GK PI+ RI LN+ G LS +LW+ + ++ G S EA
Sbjct: 5 KFKVLLYLKKSGLDKNGKAPIMGRITLNRTMAQFGCK-LSCTPKLWNPRESRLDGKSKEA 63
Query: 64 LEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRV 123
+EVN KI+++ I + Y+ L D + IK + ++DT ++++ + +D+
Sbjct: 64 VEVNAKIDKLLLAINSAYESLVERKTDFDAKAIKDLFQCSADTQMTLLKQLDAIIADIES 123
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
++GI TL Y+ + F+K +Y D+ F EL I + F L +
Sbjct: 124 RIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFGELDEQFIREYMDFCLDERGLALD 183
Query: 184 TSTKILKFLKTITIYGQKHGFLAHDPFANKRFHL---------ENTDRGFLTDEEIKNLI 234
T L LK K G ++R+H EN + LT E+ +
Sbjct: 184 TVRHYLAILKKTCRIAFKAGH-------SERYHFMHFKLPQKKENPPKA-LTREDFLKIR 235
Query: 235 HKEMASPR--LDLVRDIFLFSCFTGLAYIDVANLTEDNIV-ELDGRKWIMTKRQKTNIAT 291
E+ R L L RD+FLF+C+TG AY D ++TE+N+ + +G W+ R+K +
Sbjct: 236 DLEIPERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLA 295
Query: 292 NILLLEIPGMILEKYR-PVRKERKLLPVISNQKMNGYLKE---IADLCGIKKHLTFHMAR 347
+ LL +LEKY+ P R LLP + + G +K ++ + GI L +H+ R
Sbjct: 296 RVKLLPEALAMLEKYKDPTRP--TLLPPQEFRVLRGNMKSLRVLSGISGISMDLVYHVGR 353
Query: 348 H 348
H
Sbjct: 354 H 354
>gi|156860192|gb|EDO53623.1| hypothetical protein BACUNI_02902 [Bacteroides uniformis ATCC 8492]
Length = 297
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 2/278 (0%)
Query: 44 INAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGT 103
++ LWD + + KG S EA +N++++ I+A I Y+ + +T +++ + Y G
Sbjct: 19 VSLALWDVKTNRAKGKSEEARTLNQELDNIKAQITRHYQYICDHDSFVTAKKVYNRYVGF 78
Query: 104 SDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELT 163
S+ ++M LF + + ++GI K +T + F+KSK D+ EL
Sbjct: 79 SEECHTLMNLFREQLEPYKKKIGIEKAESTYCGLVADYKSLLLFMKSKKNAEDIVIEELE 138
Query: 164 PLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRG 223
I ++ ++L +T + LK + Q+ G++ PFA+ E R
Sbjct: 139 KSFIEDYYNWMLGTCALANSTVFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYKRRS 198
Query: 224 FLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMT 282
FL++EE++ +IH E R +RD+FLF CFTGL+Y+D+ +T DNI + DG W+M
Sbjct: 199 FLSEEELQRIIHIEPRYKRQRAMRDMFLFMCFTGLSYVDLKAITYDNIHTDSDGGTWLMG 258
Query: 283 KRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVIS 320
R KT +A + LL I ++EKYR E+K P +S
Sbjct: 259 NRIKTGVAYVVKLLPIAIELIEKYRGT-DEKKDSPNVS 295
>gi|153808389|ref|ZP_01961057.1| hypothetical protein BACCAC_02683 [Bacteroides caccae ATCC 43185]
gi|149129292|gb|EDM20508.1| hypothetical protein BACCAC_02683 [Bacteroides caccae ATCC 43185]
Length = 256
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/221 (32%), Positives = 123/221 (55%)
Query: 43 SINAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFG 102
S LW+ KE KG ++E+N +E R+ + IY+ L+ + + +T++ ++ ++G
Sbjct: 9 SCPVNLWNQAKENSKGKDRMSVELNHYLEITRSHVHQIYRELETSGKIITVDLVRKLFYG 68
Query: 103 TSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSEL 162
+ +++++F +HN R +G T+Q+YE R+ E+F+K +Y+ +D+ + L
Sbjct: 69 VDEDNKTLLQVFREHNEQSRKLIGKDFVSKTVQRYETTTRYLEEFIKKEYQLSDIALNNL 128
Query: 163 TPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR 222
I F+ FL C N++ LK LK I ++ ++ DPFA RF LE TD
Sbjct: 129 EANFISKFDAFLKIEKGCAQNSAITRLKNLKKIIRIALENDWIKKDPFAYYRFKLEETDP 188
Query: 223 GFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDV 263
FLT +EIK +I KE R++ VRD+F+F FT +A +V
Sbjct: 189 EFLTMDEIKIIIGKEFTIKRVEQVRDVFVFCIFTFVALTNV 229
>gi|53714324|ref|YP_100316.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52217189|dbj|BAD49782.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 297
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 85/274 (31%), Positives = 142/274 (51%), Gaps = 2/274 (0%)
Query: 48 LWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTL 107
LWD + + KG S EA +N++++ I+A I Y+ + +T +++ + Y G S+
Sbjct: 23 LWDVKTNRAKGKSEEARTLNQELDNIKAQITRHYQYICDHDSFVTAKKVYNRYVGFSEEC 82
Query: 108 TSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLII 167
++M LF + + ++GI K +T + F+KSK D+ EL I
Sbjct: 83 HTLMNLFREQLEPYKKKIGIEKAESTYCGLVADYKSLLLFMKSKKNAEDIVIEELEKSFI 142
Query: 168 HNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTD 227
++ ++L +T + LK + Q+ G++ PFA+ E R FL++
Sbjct: 143 EDYYNWMLGTCALANSTVFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYKRRSFLSE 202
Query: 228 EEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQK 286
EE++ +IH E R +RD+FLF CFTGL+Y+D+ +T DNI + +G W+M R K
Sbjct: 203 EELQRIIHIEPRYKRQRAMRDMFLFMCFTGLSYVDLKAITYDNIHTDSNGGTWLMGNRIK 262
Query: 287 TNIATNILLLEIPGMILEKYRPVRKERKLLPVIS 320
T +A + LL I ++EKYR E+K P +S
Sbjct: 263 TGVAYVVKLLPIAIELIEKYRGT-DEKKDSPNVS 295
>gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
gi|149127902|gb|EDM19124.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
Length = 207
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 99/154 (64%), Gaps = 10/154 (6%)
Query: 205 LAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVA 264
+ D F + + T FLT +E++ +++KE PRL LVRDIF+F+CFTGLA++DV+
Sbjct: 1 MKKDAFYGYKMEQDETAPVFLTYDELQTVMNKEFTIPRLALVRDIFIFACFTGLAFVDVS 60
Query: 265 NLTEDNIVELDGRKWIMTK-------RQKTNIATNILLLEIPGMILEKYR--PV-RKERK 314
L ++++V+ + W + K R+K + NI LL +P IL+KY PV K+
Sbjct: 61 TLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLPVPLAILKKYENNPVCIKKGY 120
Query: 315 LLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
LPV NQKMN YLKEIAD CGIKK++T H+ARH
Sbjct: 121 CLPVPCNQKMNSYLKEIADFCGIKKNITTHVARH 154
>gi|124005636|ref|ZP_01690475.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123988704|gb|EAY28310.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 420
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 110/369 (29%), Positives = 185/369 (50%), Gaps = 30/369 (8%)
Query: 5 FRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLW---------DSEKEK 55
F F LR + NK+G+TP+ RI +R+ T + I W + ++
Sbjct: 3 FTISFLLRKDKTNKKGETPVFCRIAHQGKRIDF-QTEVKIPMDRWLPPVVKLEKNGDQMF 61
Query: 56 VKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFE 115
+KG S E NR + + R IL Y L + E++ L+++K+ G + + +E E
Sbjct: 62 IKGTSEFIKEKNRLLNQTRTRILRGYNDLVSSNEEIVLKKLKAIAKGQEEKGLTFLEALE 121
Query: 116 KH--------NSDVRVQVGITKTVATLQ-KYENCKRHFEQFLKSKYKRTDLKFSE-LTPL 165
K N+ R+QV I L+ ++ H LK+ YK D+++ + T
Sbjct: 122 KSKQRSGLRPNTIRRIQVTIDNLKLFLKDEFGKEDIHLSDLLKNNYKGFDIRYVDWCTTK 181
Query: 166 IIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHL---ENTDR 222
F+ + K ++ F K I + Q G + +P + F + E T R
Sbjct: 182 TTVRFD-GSIRYPKKHETAIREVRHFRKAINMAVQL-GEMDKNPLIAE-FKIPKDEKTKR 238
Query: 223 GFLTDEEIKNLIHKEMASP-RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIM 281
LT EE+K L+ +++ +D +RD F+F CFTGLA++D+ +L ++++ + + R WI+
Sbjct: 239 EVLTLEELKKLMELDLSDKLNMDRIRDCFVFQCFTGLAFVDIDSLKKEHLFKRNERTWII 298
Query: 282 TKRQKTNIATNILLLEIPGMILEKYR--PV-RKERKLLPVISNQKMNGYLKEIADLCGIK 338
+R K++ + LL +IL+KYR PV + KL+PVISN+ N YL+ +A+L I+
Sbjct: 299 KERVKSSTVAKVPLLPQAQVILDKYRDDPVCAGKDKLIPVISNKNYNVYLQSMAELASIE 358
Query: 339 KHLTFHMAR 347
KHLT H+ R
Sbjct: 359 KHLTSHVGR 367
>gi|34540611|ref|NP_905090.1| integrase [Porphyromonas gingivalis W83]
gi|34396924|gb|AAQ65989.1| integrase [Porphyromonas gingivalis W83]
Length = 432
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 112/340 (32%), Positives = 163/340 (47%), Gaps = 35/340 (10%)
Query: 23 PILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEAL-----EVNRKIEEIRADI 77
PI +R+ +R+ +TG I+ WD++K++VK L E+N + ++
Sbjct: 26 PIRMRVNFASQRIEF-TTGYRIDVAKWDADKQRVKNGCTNKLKQSASEINAALLGYYTEL 84
Query: 78 LTIYKRLDVTVEDLTLERIKSEYFG-----------TSDTLTSVMELFEKHNSDVRVQVG 126
++KR +V + +KS + TSD + E ++ + VRV G
Sbjct: 85 QEVFKRFEVAEVMPSPADVKSAFNARHRSDDVQTEQTSDKPDASAEFYKAFDEFVRV-CG 143
Query: 127 ITK--TVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNT 184
T AT +K+ K H F R DL FS + + + +L V K R +T
Sbjct: 144 RQNDWTHATYEKFAAVKNHLRSF------RADLSFSFFNEVGLTEYVRYLREVRKMRNST 197
Query: 185 STKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRG--FLTDEEIKNLIHKEM--AS 240
K L FLK + G +++ + R L++T + FLT EE+ L E+ A
Sbjct: 198 IGKQLSFLKWFLRWSFGQGIHSNNAYDTFRPKLKDTQKKIIFLTWEELTKLREFEIPPAK 257
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPG 300
LD VRD+FLF CFTGL Y DV NL +I E I KT+ + I L +
Sbjct: 258 QSLDRVRDVFLFQCFTGLRYSDVYNLRRSDIKE----DHIEVTTIKTSDSLVIELNKHSK 313
Query: 301 MILEKYRPVRKER-KLLPVISNQKMNGYLKEIADLCGIKK 339
ILEKY+ V E K LPVI+NQKMN YLKE+A+L GI +
Sbjct: 314 AILEKYQDVVFEHDKALPVITNQKMNEYLKELAELAGINE 353
>gi|29347745|ref|NP_811248.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29339646|gb|AAO77442.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 252
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 68/219 (31%), Positives = 126/219 (57%), Gaps = 1/219 (0%)
Query: 63 ALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVR 122
++E N +E R+ + IY+ L+ + + +T++ ++ Y+ + +++++F +HN R
Sbjct: 2 SVEPNHYLEITRSHVHQIYRELETSGKVITVDLVRKPYYDVDEDNKTLLQVFREHNEQSR 61
Query: 123 VQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRP 182
+G T+Q+YE R+ E+F+K +Y+ +D+ + L I F+ FL C
Sbjct: 62 KLIGKDFISKTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQ 121
Query: 183 NTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPR 242
N++ LK LK I ++ ++ DPFA RF L+ T FLT +EIK ++ KE R
Sbjct: 122 NSAITRLKNLKKIIRIALENDWIKKDPFAYYRFKLKETYPEFLTMDEIKIILAKEFTIKR 181
Query: 243 LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWI 280
++ VRD+F+F +TGLA+ DV +L+ +++++ + G WI
Sbjct: 182 VEQVRDVFIFCSYTGLAFSDVKDLSPEHLLKDNKGELWI 220
>gi|124008731|ref|ZP_01693421.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123985807|gb|EAY25680.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 428
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 102/372 (27%), Positives = 184/372 (49%), Gaps = 44/372 (11%)
Query: 9 FYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLW---------DSEKEKVKGH 59
F LR + NK+G+TP+ RI + +R+ T + I W + ++ +KG
Sbjct: 15 FLLRKDKTNKKGETPVFCRISYHGKRVDF-QTEIKIPMDRWLPPVVKLEKNGDQVFIKGT 73
Query: 60 SAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEK--H 117
S +NR + ++R IL Y L E++ L+++K+ G + ++ME ++ H
Sbjct: 74 SEVIKSMNRLLNKMRGRILNAYTDLVNEGEEIRLQKLKAVAKGEEEKGITLMEALDRLTH 133
Query: 118 NSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFEL----F 173
+R T +K + ++ + FL+ +Y + D+ ++L F++ +
Sbjct: 134 RGGLRYH--------TKRKIKISIQNLKLFLRDEYNKEDIYLTDLLKESYKGFDIRYVDW 185
Query: 174 LLTVAKCRPNTSTKILK-----------FLKTITIYGQKHGFLAHDPFANKRFHL---EN 219
T R + ST++ K F + + I Q G + +P K F + E
Sbjct: 186 CTTKTTIRFDGSTRLPKKHQTAIKEVRHFRQAVNIAMQL-GEIKTNPLIAK-FKIPKDER 243
Query: 220 TDRGFLTDEEIKNLIHKEMASPR-LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRK 278
R LT +E+K ++ +++ R +D +RD F+F CFTGLA+ D+ +L ++++E R
Sbjct: 244 PKRVILTLDELKQIMEVDLSDKRGMDRIRDCFVFQCFTGLAFSDIVDLKPEHLIEQGERT 303
Query: 279 WIMTKRQKTNIATNILLLEIPGMILEKYR--PVRKERK-LLPVISNQKMNGYLKEIADLC 335
WI+ +R K++ + LL +L+KY+ PV + L+PVI++ N YL+ IA+
Sbjct: 304 WIIKERVKSSTVAKMPLLPQAKFVLDKYKDDPVCLSKGVLIPVITSGNYNTYLRMIAECV 363
Query: 336 GIKKHLTFHMAR 347
GI KHLT H+ R
Sbjct: 364 GIDKHLTSHVGR 375
>gi|53714293|ref|YP_100285.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52217158|dbj|BAD49751.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|156860151|gb|EDO53582.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
Length = 403
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 170/350 (48%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FY+ N + +G T +L RI ++ ++ ++ +TG+ WDS+K ++K
Sbjct: 1 MRSTFKLLFYINRNKVKSDGTTAVLCRISIDGKKSAV-TTGVYCKPGDWDSKKCEIK--- 56
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
A E NR + R+ + Y L +T E +K+ G + +++ E
Sbjct: 57 -TARENNR-LAAFRSRLEEAYGNLLRNQGVVTAELLKTTVSGANSVPEYLLQAGEVERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+RV+ + +T ++ + + + QF++S+ + D+ FS++T +F++FL
Sbjct: 115 LRVRSKEINSTSTYRQSKTTQLNLRQFIESRGMK-DIAFSDITEEFAESFKVFLKKELGH 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR-GFLTDEEIKNLIHKEMA 239
R L +L + L +P + + + T + ++ E+K ++ +
Sbjct: 174 RNGHVNHCLCWLNRLIYIAVDREILRANPIEDVAYERKETPKLRHISRSELKRMMETPLP 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
P ++L R F+FS TGLAY D L +I +GR++I +R KT++ I L I
Sbjct: 234 DPMMELARRTFIFSSLTGLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPI 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
G ILE Y +R + P+ + + + G+K++L++HMARH
Sbjct: 294 AGQILELYNTTDDDRPVFPLPVRDVLWYEVHGMGVALGMKENLSYHMARH 343
>gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339239|gb|AAO77036.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
Length = 403
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 170/350 (48%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FY+ N + +G T +L RI ++ ++ ++ +TG+ WDS+K ++K
Sbjct: 1 MRSTFKLLFYINRNKVKSDGTTAVLCRISIDGKKSAV-TTGVYCKPGDWDSKKCEIK--- 56
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
A E NR + R+ + Y L +T E +K+ G + +++ E
Sbjct: 57 -TARENNR-LAAFRSRLEEAYGNLLRNQGVVTAELLKTTVSGANSVPEYLLQAGEVERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+RV+ + +T ++ + + + QF++S+ + D+ FS++T +F++FL
Sbjct: 115 LRVRSKEINSTSTYRQSKTTQLNLRQFIESRGMK-DITFSDITEEFAESFKVFLKKELGH 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR-GFLTDEEIKNLIHKEMA 239
R L +L + L +P + + + T + ++ E+K ++ +
Sbjct: 174 RNGHVNHCLCWLNRLIYIAVDREILRANPIEDVAYERKETPKLRHISRSELKRMMETPLP 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
P ++L R F+FS TGLAY D L +I +GR++I +R KT++ I L I
Sbjct: 234 DPMMELARRTFIFSSLTGLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPI 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
G ILE Y +R + P+ + + + G+K++L++HMARH
Sbjct: 294 AGQILELYNTTDDDRPVFPLPVRDVLWYEVHGMGVALGMKENLSYHMARH 343
>gi|124004365|ref|ZP_01689211.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123990435|gb|EAY29934.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 420
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 100/369 (27%), Positives = 184/369 (49%), Gaps = 38/369 (10%)
Query: 9 FYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLW---------DSEKEKVKGH 59
F LR + NK+G+TP+ RI +R+ T + I W + ++ +KG
Sbjct: 7 FLLRKDKTNKKGETPVFCRISYQGKRVDF-QTEVKIPMDRWLPPVVKLEKNGDQIFIKGT 65
Query: 60 SAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNS 119
S +NR + ++R IL Y L E++ L+++K+ G + +++E+ + +
Sbjct: 66 SEVIKSMNRLLNKMRGRILNAYTDLVNEEEEVRLQKLKAVAKGEEEKGITLLEVLTRSAN 125
Query: 120 DVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFEL----FLL 175
++ G T +K + ++ + FL+ +Y + D+ ++L F++ +
Sbjct: 126 RSGLRSG------TQRKIKISIQNLKLFLRDEYGKEDIYLTDLLKEAYKGFDIRYVDWCT 179
Query: 176 TVAKCRPNTSTKILK----FLKTITIYGQ------KHGFLAHDPFANKRFHL---ENTDR 222
T R + ST++ K +K + + Q + G + +P K F + E R
Sbjct: 180 TKTTIRFDGSTRLPKKHQTAIKEVRHFRQAVNTAVQLGEIRTNPLIAK-FKIPKDERPKR 238
Query: 223 GFLTDEEIKNLIHKEMASPR-LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIM 281
LT +E+K ++ +++ R ++ VRD F+F CFTG A+ D+ +L ++++E R WI+
Sbjct: 239 VILTLDELKQIMEVDLSDKRGMERVRDCFVFQCFTGFAFSDIVDLKPEHLIEQGERTWII 298
Query: 282 TKRQKTNIATNILLLEIPGMILEKYR--PVRKERK-LLPVISNQKMNGYLKEIADLCGIK 338
+R K++ + LL IL+KY+ PV + L+PVI++ N YLK IA+ GI
Sbjct: 299 KERVKSSTIAKMPLLPQARFILDKYKDDPVCLSKGVLIPVITSGNYNTYLKMIAEYVGID 358
Query: 339 KHLTFHMAR 347
KHLT H+ R
Sbjct: 359 KHLTSHVGR 367
>gi|10442749|gb|AAG17464.1|AF303352_5 Int [Bacteroides fragilis]
gi|10048475|gb|AAG12447.1| integrase-like protein Int [Bacteroides fragilis]
Length = 208
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 1/187 (0%)
Query: 129 KTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKI 188
K+V T +KY H + FL + D+ ELT I +F+++L T C NT
Sbjct: 5 KSVKTYEKYVTVYNHLKDFLYQRLHLKDIALKELTLAFIKDFDMYLRTDRHCCNNTVWIY 64
Query: 189 LKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRD 248
L+T+ +G+ DPF E T R FL +EI L+ M + + +L+R
Sbjct: 65 TAPLRTMVNVAIDNGWPTRDPFRKYEIEKEETARTFLNKDEIARLLDTLMKNVKQELIRP 124
Query: 249 IFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYR 307
+FLF FTGL + D+ NL+E+N+ D R WI RQKTN+ +NI LL+IP ++ KYR
Sbjct: 125 LFLFCTFTGLDFADLYNLSEENLRTYFDARLWINIPRQKTNVVSNIRLLDIPHRLINKYR 184
Query: 308 PVRKERK 314
+R+ K
Sbjct: 185 DLRRTGK 191
>gi|124004236|ref|ZP_01689082.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123990306|gb|EAY29805.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 420
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 100/369 (27%), Positives = 183/369 (49%), Gaps = 38/369 (10%)
Query: 9 FYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLW---------DSEKEKVKGH 59
F LR + NK+G+TP+ RI +R+ T + I W + ++ +KG
Sbjct: 7 FLLRKDKTNKKGETPVFCRISYQGKRVDF-QTEVKIPMDRWLPPVVKLEKNGDQIFIKGT 65
Query: 60 SAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNS 119
S +NR + ++R IL Y L E++ L+++K+ G + + +E+ + +
Sbjct: 66 SEVIKSMNRLLNKMRGRILNAYTDLLNEEEEVRLQKLKAVAKGEEEKGITFLEVLTRSAN 125
Query: 120 DVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFEL----FLL 175
++ G T +K + ++ + FL+ +Y + D+ ++L F++ +
Sbjct: 126 RSGLRSG------TQRKIKISIQNLKLFLRDEYGKEDIYLTDLLKEAYKGFDIRYVGWCT 179
Query: 176 TVAKCRPNTSTKILK----FLKTITIYGQ------KHGFLAHDPFANKRFHL---ENTDR 222
T R + ST++ K +K + + Q + G + +P K F + E R
Sbjct: 180 TKTTIRFDGSTRLPKKHQTAIKEVRHFRQAVNTAVQLGEIRTNPLIAK-FKIPKDERPKR 238
Query: 223 GFLTDEEIKNLIHKEMASPR-LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIM 281
LT +E+K ++ +++ R ++ VRD F+F CFTG A+ D+ +L ++++E R WI+
Sbjct: 239 VILTLDELKQIMEVDLSDKRGMERVRDCFVFQCFTGFAFSDIVDLKPEHLIEQGERTWII 298
Query: 282 TKRQKTNIATNILLLEIPGMILEKYR--PVRKERK-LLPVISNQKMNGYLKEIADLCGIK 338
+R K++ + LL IL+KY+ PV + L+PVI++ N YLK IA+ GI
Sbjct: 299 KERVKSSTIAKMPLLPQARFILDKYKDDPVCLSKGVLIPVITSGNYNTYLKMIAEYVGID 358
Query: 339 KHLTFHMAR 347
KHLT H+ R
Sbjct: 359 KHLTSHVGR 367
>gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
Length = 403
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 169/350 (48%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F+ +FY+ N + +G T +L RI ++ ++ ++ +TG+ WDS+K ++K
Sbjct: 1 MRSTFKLLFYINRNKVKSDGTTAVLCRISIDGKKSAV-TTGIYCKPGDWDSKKCEIK--- 56
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
A E NR + R+ + Y L +T E +K+ G + +++ E
Sbjct: 57 -TARENNR-LAAFRSRLEEAYGNLLRNQGVVTAELLKTTVSGANSVPEYLLQAGEVERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+RV+ + +T ++ + + + QF++S+ + D+ FS++T +F++FL
Sbjct: 115 LRVRSKEINSTSTYRQSKTTQLNLRQFIESRGMK-DIAFSDITEEFAESFKVFLKKELGH 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR-GFLTDEEIKNLIHKEMA 239
R L +L + L +P + + + + ++ E+K ++ +
Sbjct: 174 RNGHVNHCLCWLNRLIYIAVDREVLRANPIEDVAYERKEAPKLRHISRSELKRMMETPLP 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
P ++L R F+FS TGLAY D L +I +GR++I +R KT++ I L I
Sbjct: 234 DPMMELARRTFIFSSLTGLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPI 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
G IL+ Y +R + P+ + + + G+K++L++HMARH
Sbjct: 294 AGQILDLYNTTDDDRPVFPLPVRDVLWYEVHGMGVALGMKENLSYHMARH 343
>gi|156862826|gb|EDO56257.1| hypothetical protein BACUNI_00095 [Bacteroides uniformis ATCC 8492]
Length = 197
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 208 DPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLT 267
D +N R + NT R +LT EE+ +I +E S RL+ VRD++LF+C+TGL Y D+ NL
Sbjct: 4 DYLSNSRTNGMNTGREYLTMEELAAIIKREFDSSRLEKVRDLYLFACYTGLVYQDIKNLQ 63
Query: 268 EDNIVEL-DGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNG 326
NI+ DG +W+ +RQ + + I LLE I++KY+ E LLPV S QK+N
Sbjct: 64 PYNIITAKDGTRWLSIRRQMHSSSWQIPLLENACQIIDKYKDNGTE-NLLPVPSIQKVNA 122
Query: 327 YLKEIADLCGIKKHLTFHMARHRDFYKRQIINRLNCLSI 365
YLKEIA CG+ ++L+F AR I N+++ ++I
Sbjct: 123 YLKEIASQCGLDRNLSFQSARSTFAVTIGIANKVSPVTI 161
>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
43184]
gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
43184]
Length = 409
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 160/351 (45%), Gaps = 6/351 (1%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+ +F+ + YL+ + ++K G+ PI+ RI + ++ S LS LW++ + ++ G S
Sbjct: 3 REKFKILLYLKKSGLDKLGQAPIMGRITYGRT-IAQFSCKLSCAPDLWNARESRLNGKSR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
EA+ N K+E + + + Y+ L T IK + G+ T + +E +++ D+
Sbjct: 62 EAVVTNGKLERLLLSVQSAYRVLYERGAVFTATDIKELFQGSMQTQITFLERYDRMVKDM 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCR 181
+VGI T+ Y ++H + F+ KY D+ F ++ + + + +
Sbjct: 122 EQKVGIEIKATTMSSYHTVRKHLQVFIGEKYHTADIPFGQMEEDFLECLQHYSVGKLGHS 181
Query: 182 PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHL-ENTDRGFLTDEEIKNLIHK--EM 238
K+ +K + + G FA+ EN L + L+ E
Sbjct: 182 QGHYRKMALAVKKLCRLAYREGLTERQLFAHIEIERGENKQPRALDRASLDKLLGLTFEP 241
Query: 239 ASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLE 297
L+ R++FLFSC+TG+AY D+ L +++ D G W+ +RQKTN + LL
Sbjct: 242 YEVELETARNLFLFSCYTGVAYCDMVALNREHLFTDDEGALWLKFRRQKTNTLCRVKLLS 301
Query: 298 IPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++E+Y+ + P+ + + LK + GI L+ H+ RH
Sbjct: 302 EAVRMIERYQSEERNTLFAPITYSAYLV-QLKALQLRAGISIPLSAHVGRH 351
>gi|53712575|ref|YP_098567.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|150005004|ref|YP_001299748.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|153807829|ref|ZP_01960497.1| hypothetical protein BACCAC_02113 [Bacteroides caccae ATCC 43185]
gi|52215440|dbj|BAD48033.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|149129438|gb|EDM20652.1| hypothetical protein BACCAC_02113 [Bacteroides caccae ATCC 43185]
gi|149933428|gb|ABR40126.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 430
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 105/342 (30%), Positives = 160/342 (46%), Gaps = 45/342 (13%)
Query: 23 PILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYK 82
PI +R+ +R+ +TG I+A WD++K++VK L+++ EI AD+L Y
Sbjct: 26 PIRMRVIFASQRIEF-TTGYRIDATKWDTDKQRVKNGCTNKLKLS--ASEINADLLRQYT 82
Query: 83 RLDVTVEDLTLERIKSEYFGTSDTLTSVM-------------------ELFEKHNSDVRV 123
+ ++ ++ + D+ + M E FE+ +
Sbjct: 83 EIQNIFKEFEVQNVLPTPAQIKDSFNARMKDAPVTEQETAEGPKISFWEAFEEFVRECGK 142
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
Q T AT +K+ K H ++F R +L F T ++++ FL R +
Sbjct: 143 QNDWTD--ATYEKFAAVKNHLKEF------RDELSFDTFTENGLNDYVDFLRNKKDMRNS 194
Query: 184 TSTKILKFLKTITIYGQKHGF---LAHDPFANKRFHLENTDRG--FLTDEEIKNLIHKEM 238
T K + FLK + K G+ +A+D F K L+NT + FLT EE+ L ++
Sbjct: 195 TIGKQIAFLKWFLRWSFKKGYNQNMAYDSFKPK---LKNTPKKVIFLTWEELNRLKDYKI 251
Query: 239 ASPR--LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLL 296
+ L+ VRD+FLF CF+GL Y DV NL +I I KT + I L
Sbjct: 252 PQTKQYLERVRDVFLFCCFSGLRYSDVYNLKRSDIKP----DHIEVTTVKTADSLIIELN 307
Query: 297 EIPGMILEKYRPVR-KERKLLPVISNQKMNGYLKEIADLCGI 337
ILEKY+ V ++ K LPVISNQKMN YLKE+ +L I
Sbjct: 308 NHSKAILEKYKSVHFEDHKALPVISNQKMNDYLKELGELAEI 349
>gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 403
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 163/350 (46%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S FR +FY+ N + +G T IL RI ++ R S +TG+ WDS K +++ +
Sbjct: 1 MRSTFRLMFYINRNKVKSDGTTAILCRISIDG-RKSAVTTGIYCKPSDWDSNKGEIRMNK 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
N ++ R+ + Y L +T E +K+ T +++ E
Sbjct: 60 E-----NNRLTAFRSRLEEAYGNLLKNQGVVTAELLKATVSNTVSIPEFLLQTGEAERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+R++ + +T ++ + + + QF++S+ R D+ FS++T +F++FL
Sbjct: 115 LRIRSVEINSTSTYRQSKTTQLNLRQFIESRGMR-DIAFSDITEEFAESFKIFLKKELGH 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR-GFLTDEEIKNLIHKEMA 239
L +L + L +P + + +++ + + E+K ++ M
Sbjct: 174 GNGHVNHCLCWLNRLIYIAVDREVLRANPIEDVAYEKKDSPKLKHIGRNELKLIMETPMP 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQKTNIATNILLLEI 298
P ++L R F+FS FTGLAY+D L +I + GR++I +R KT I L +
Sbjct: 234 DPMMELARRTFIFSSFTGLAYVDTRRLHPRHIEKSSLGRRYIRIRRAKTGAEAFIPLHPV 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
ILE Y E+ + P+ + + + G+K++L++HMARH
Sbjct: 294 AEQILELYNTTDNEKPVFPLPVRDILWYEVHGLGVALGMKENLSYHMARH 343
>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
Length = 407
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 93/357 (26%), Positives = 163/357 (45%), Gaps = 33/357 (9%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
K ++R VF R +NK+G + + YLN+ ++ L T + + + W E +V H
Sbjct: 4 KIRYRLVFN-RQKKLNKQGTALVQVEAYLNQRKIYL-KTNVYLKPECWSREGAQVINHP- 60
Query: 62 EALEVNRKIEE----IRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKH 117
++ E+N + E ++ L +KR L + +K + T +
Sbjct: 61 QSNELNAMLYEYILYLQGIELGYWKRGIPATLSLLKDAVKKKSAVNVSFSTFAKSAIDNS 120
Query: 118 NSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTV 177
+ + + T+A L + R+ L F +LT + +FE +L
Sbjct: 121 DKKQSTKDNLHSTLAVLNDF----------------RSGLDFKDLTYTFLRDFEQYLREK 164
Query: 178 AKCRPNTSTKILKFLKTITIYGQKHGFLAHD--PFANKRFHLENTDRGFLTDEEIKNLIH 235
NT K ++ L+T+ G++ D PF + E FLT +E+K L
Sbjct: 165 GNA-VNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLET 223
Query: 236 KEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI-- 293
E+ + V D FLF C+TGL Y D LT +N + ++G++W+ K KT + +
Sbjct: 224 VEVEEKSMRHVLDAFLFCCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPL 283
Query: 294 -LLLEIPGM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
LL E + IL++Y + L+ + N ++N L+++ LCGIKK +T+H++RH
Sbjct: 284 HLLFESRALGILDRYPDI---GSLVSLPCNSEVNKQLRKLTGLCGIKKRITYHVSRH 337
>gi|29347370|ref|NP_810873.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339270|gb|AAO77067.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 212
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 2/211 (0%)
Query: 111 MELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNF 170
M LF + + ++GI K +T + F+KSK D+ EL I ++
Sbjct: 1 MNLFREQLEPYKKKIGIEKAESTYCGLVADYKSLLLFMKSKKNAEDIVIEELEKSFIEDY 60
Query: 171 ELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEI 230
++L +T + LK + Q+ G++ PFA+ E R FL++EE+
Sbjct: 61 YNWMLGTCALANSTVFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYKRRSFLSEEEL 120
Query: 231 KNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNI 289
+ +IH E R +RD+FLF CFTGL+Y+D+ +T DNI + DG W+M R KT +
Sbjct: 121 QRIIHIEPRYKRQRAMRDMFLFMCFTGLSYVDLKAITYDNIHTDSDGGTWLMGNRIKTGV 180
Query: 290 ATNILLLEIPGMILEKYRPVRKERKLLPVIS 320
A + LL I ++EKYR E+K P +S
Sbjct: 181 AYVVKLLPIAIELIEKYRGT-DEKKDSPNVS 210
>gi|124008268|ref|ZP_01692964.1| transposase, putative [Microscilla marina ATCC 23134]
gi|123986217|gb|EAY26046.1| transposase, putative [Microscilla marina ATCC 23134]
Length = 415
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 100/363 (27%), Positives = 163/363 (44%), Gaps = 29/363 (7%)
Query: 5 FRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEK--------V 56
F +FYLR + + +G I +RI +K+ + STG+ I + W K+ +
Sbjct: 7 FSILFYLRKDIPDSQGNLRIDLRISTSKKDRTSISTGIKIKPEQWLVPKKHASNGMTLHI 66
Query: 57 KGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEK 116
KG +++ +N ++ I + Y L +T +K + +T +M + E
Sbjct: 67 KGSTSKIKALNERLSIIETKLQNRYNELLKIGAHITARSLKEVLISNNGEIT-LMSISET 125
Query: 117 HNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPL----IIHNFEL 172
+++ I K+ Y R ++FL+ +Y DL S L +
Sbjct: 126 LINNI-----IAKSTKETTTYR--ARRIQEFLQDEYGIKDLPISGLLTQEYRGMGKKLND 178
Query: 173 FLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDP----FANKRFHLENTDRGFLTDE 228
+ L K + + L LK I G + H+P F + H E + + E
Sbjct: 179 WCLYRKKYSNDVARLTLVLLKNIATEAVDLGVIEHNPINYNFKAIKEHKEQKE-SLILQE 237
Query: 229 EIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDN-IVELDGRKWIMTKRQKT 287
+K H + L VRD FLF CFTGLAYID NL D+ +V +D R WI+ KRQKT
Sbjct: 238 VLKIEKHVIDSKSALYRVRDCFLFQCFTGLAYIDTYNLNGDDLLVGVDKRNWIVKKRQKT 297
Query: 288 NIATNILLLEIPGMILEKY--RPVRKERKLLPV-ISNQKMNGYLKEIADLCGIKKHLTFH 344
+ + +++ IL++Y + + +LLPV SN N Y+K++ GI K ++ H
Sbjct: 298 KVVAKVPIIKSAQDILDRYAHNIGKYDGRLLPVYASNSAYNKYIKKLMKEVGIDKKISSH 357
Query: 345 MAR 347
AR
Sbjct: 358 SAR 360
>gi|8347627|gb|AAF74726.1|AF251288_3 integrase [Bacteroides fragilis]
Length = 427
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 38/339 (11%)
Query: 23 PILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEAL-----EVNRKIEEIRADI 77
PI +R+ +R+ +TG I+ WD++K++VK L E+N + + A+I
Sbjct: 26 PIRMRVIFASQRIEF-TTGYRIDVAKWDADKQRVKSGCTNKLKQSAAEINTDLLKYYAEI 84
Query: 78 LTIYKRLDVTVEDLTLERIKSEY-FGTSDTL--------TSVMELFEKHNSDVRVQVGIT 128
I+K +V T +++K + DT S E+F++ + Q T
Sbjct: 85 QNIFKEFEVQEVMPTTQQLKEAFNMRMKDTSEEQPEEAPVSFWEVFDEFVKECGNQNNWT 144
Query: 129 KTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKI 188
+T +K+ + H ++F + D F+ ++ + FL R +T K
Sbjct: 145 --ASTYEKFAAVRNHLKEF------KEDATFNYFNEFGLNEYVNFLRDTKDMRNSTIGKQ 196
Query: 189 LKFLKTITIYGQKHGF---LAHDPFANKRFHLENTDRG--FLTDEEIKNLIHKEMASPR- 242
+ FLK + K G +A+D F K L+ T + FLT +E+ L ++ +
Sbjct: 197 MGFLKWFLRWSFKKGHHQNIAYDTFKPK---LKTTSKKVIFLTWDELNKLKDYQIPKDKQ 253
Query: 243 -LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM 301
L+ VRD+FLF CFT L Y DV NL ++ I KT + I L +
Sbjct: 254 YLERVRDVFLFCCFTSLRYSDVRNLKRSDV----KSDHIEITTVKTADSLTIELNKYSKA 309
Query: 302 ILEKYRPVRKERKL-LPVISNQKMNGYLKEIADLCGIKK 339
IL+KY+ + E + LPVISNQKMN YLKE+ +L I +
Sbjct: 310 ILDKYKDIHFENYMALPVISNQKMNDYLKELGELAEINE 348
>gi|83815635|ref|YP_444738.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
gi|83757029|gb|ABC45142.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
Length = 467
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 88/363 (24%), Positives = 156/363 (42%), Gaps = 23/363 (6%)
Query: 12 RSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIE 71
R+ + G+ PI +RI E+ + + + + A+ W+ +K +V G +A E+N +
Sbjct: 63 RTRRKDDHGRVPIRLRISHRGEKRFI-ALPVKVLAKKWNGDKRRVTGTHPDAGEINTFLS 121
Query: 72 EIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTV 131
++ ++ RL+ +T +RIK E + + S E F + +
Sbjct: 122 DLERAAFSVISRLERAGTLITAQRIKDEIQEEREEVKSAPEDFLAFAREKVKGYKRRGQI 181
Query: 132 ATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKF 191
T + Y R F F++ Y R ++ F L + F + NT + L
Sbjct: 182 GTFRSYRTTCRKFTAFIEETYGRDEVPFGALEAELFREFRTYCYEERGNSTNTVGRELGI 241
Query: 192 LKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEM--ASPRLDLVRDI 249
++T+ + K G L+ PF + E + + LT EE++ + E+ SP + R
Sbjct: 242 MRTLVRHAMKEGKLSAYPFEHITIDSEPSQKELLTPEEVERIADLEIDEESPAAE-ARRW 300
Query: 250 FLFSCFT-GLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPGMILEKYR 307
FLF+ + G+ + DVA L +I E GR + K +KT + L+ IL +Y
Sbjct: 301 FLFAYYAGGMRFSDVATLQWQHIREGRSGRPRVCYKMKKTADTVGVPLIPEAKEILCRYE 360
Query: 308 PVRKERKLLPVIS-----------------NQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
E + P+ N N +LKE+A GI+K +TFH++R+
Sbjct: 361 EGDGEDWVFPISEGIDPGNEEALHRRKCQRNSAANRHLKELAGQAGIEKRVTFHLSRNAA 420
Query: 351 FYK 353
+K
Sbjct: 421 AWK 423
>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
8482]
Length = 386
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 35/353 (9%)
Query: 10 YLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGH-SAEALE--V 66
Y R +N G + + YLNK+++ ST + + + WD +++ +K H + +AL +
Sbjct: 10 YNRKKSLNDRGTALVQVEAYLNKKKVYF-STHVYLRPEQWDVKRKIIKDHPNQDALNGML 68
Query: 67 NRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVG 126
N I E+ L+++++ + +TL IK E+ K N+D
Sbjct: 69 NEFIIELEKKELSLWRQ----GKTITLSLIKEEF---------------KSNTDASFLGF 109
Query: 127 ITKTVATLQKYENCKR-HFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTS 185
K + + Q ++ KR H + + ++F +LT + +FE L + + NT
Sbjct: 110 ARKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYE-SGYQTNTV 168
Query: 186 TKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTD--RGFLTDEEIKNLIHKEMASPR- 242
K +K LK+ G++ + +A +R+ ++ + FL EE+K L +
Sbjct: 169 AKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNS 228
Query: 243 -LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI---LLLEI 298
L+ D FLF C+TGL Y D NL E NIV++DG+ W++ KT + LL E
Sbjct: 229 CLEHTLDAFLFCCYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEG 288
Query: 299 PGM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
+ +L+KY+ K + +N +N L I L I KH +FH ARH +
Sbjct: 289 KALTLLQKYQG--KWSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTN 339
>gi|153807870|ref|ZP_01960538.1| hypothetical protein BACCAC_02155 [Bacteroides caccae ATCC 43185]
gi|149129479|gb|EDM20693.1| hypothetical protein BACCAC_02155 [Bacteroides caccae ATCC 43185]
Length = 427
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 98/341 (28%), Positives = 152/341 (44%), Gaps = 42/341 (12%)
Query: 23 PILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYK 82
PI +R+ +R+ +TG I+ WD++K++VK L+ + EI AD+L Y
Sbjct: 26 PIRMRVIYASQRIEF-TTGYRIDVAKWDADKQRVKNGCTNKLK--QSASEINADLLKYYA 82
Query: 83 RLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVR---VQVGITK---------- 129
+ ++ ++ E T+ L L K NS+ + Q+ +
Sbjct: 83 EMQNVFKEFEVQ----ETMPTTQQLKDAFNLRMKDNSEEQQEEAQISFWEVFDEFVKECG 138
Query: 130 -----TVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNT 184
T +T +K+ + H ++F + D+ F ++ + FL R +T
Sbjct: 139 NQNNWTASTYEKFAAVRNHLKEF------KEDVTFEYFNDFGLNEYVNFLRDKKDMRNST 192
Query: 185 STKILKFLKTITIYGQKHGF---LAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASP 241
K + FLK + K G +A+D F K FLT +E+ L ++
Sbjct: 193 IGKQMGFLKWFLRWSFKKGHHQNIAYDTFKPKL-KTTPKKVIFLTWDELNKLKDYQIPHD 251
Query: 242 R--LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIP 299
+ L+ VRD+FLF CFT L Y DV NL +I I KT + I L +
Sbjct: 252 KQYLERVRDVFLFCCFTSLRYSDVRNLKRSDIKP----DHIEVTTVKTADSLIIELNDHS 307
Query: 300 GMILEKYRPVRKERKL-LPVISNQKMNGYLKEIADLCGIKK 339
ILEKY+ V E + LPVISNQKMN YLKE+ +L I +
Sbjct: 308 KAILEKYKDVHFENHMALPVISNQKMNDYLKELGELAEINE 348
>gi|34540597|ref|NP_905076.1| integrase [Porphyromonas gingivalis W83]
gi|34541124|ref|NP_905603.1| integrase [Porphyromonas gingivalis W83]
gi|34396910|gb|AAQ65975.1| integrase [Porphyromonas gingivalis W83]
gi|34397440|gb|AAQ66502.1| integrase [Porphyromonas gingivalis W83]
Length = 400
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 23/358 (6%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F + Y+ N + +G T +L RI ++ + + +TG+S Q W++ K
Sbjct: 1 MRSTFSLLLYINRNKVRVDGTTSVLCRISIDGKNTVI-TTGISCKPQQWNA-----KNAE 54
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
N ++++ R+D +Y+ L ++ E +K+E G ++++ E+
Sbjct: 55 TSDARTNNRLKKFRSDAERLYEDLLKRYGVVSAELLKNEIAGHVVVPIHLLQMGERERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
+ V+ + +T + + + +FL+SK +D+ F ++T ++++L
Sbjct: 115 LAVRANEIGSNSTYRSSRYYQSYIREFLESK-GMSDIAFLDITEEFGREYKVYLKRYKNF 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFAN---------KRFHLENTDRGFLTDEEIK 231
+ + L +L + H + +P KR H+ + +
Sbjct: 174 GASQTNHCLCWLNRLVYLAVDHEIIRANPLEEVEYEKKPPAKRMHISKAEL------KQL 227
Query: 232 NLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRKWIMTKRQKTNIA 290
+ P +L R F+FSCFTGLAY+D L +I + +GR++I R+KT +
Sbjct: 228 LELKLPQNDPLKELARRTFIFSCFTGLAYVDTQLLYPHHIGKTAEGRRYIRINRRKTKVE 287
Query: 291 TNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ I L I I+ Y + + P+ S M + E+ + G K++L++H ARH
Sbjct: 288 SFIPLHPIAEQIINLYNTTDDTQPVFPLPSRDMMWFEIHELGVIIGRKENLSYHQARH 345
>gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482]
gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482]
Length = 407
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 16/353 (4%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S ++ +Y+ + +G T I RI ++ ++S +TGL + WD++K + K
Sbjct: 1 MRSTYKQFYYINRGRVKADGTTSIFCRITIDG-KVSAIATGLYCAPEEWDTKKGEAKN-- 57
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
VN +++ R I Y++ +T E +K+ D T M L +
Sbjct: 58 ---ARVNGQLQAFRLRIDEAYEQATKEKGIVTAEILKNVIV---DANTIPMTLLATGEEE 111
Query: 121 VRVQVGITKTVATLQKYENCKR---HFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTV 177
+ + + Y K + +F+ + D+ F +LT +++LFL+
Sbjct: 112 RERLRLRSIRINSTSSYRQSKTSQLNLREFIGLR-GMNDITFEDLTEEFGKSYKLFLIGK 170
Query: 178 AKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENT-DRGFLTDEEIKNLIHK 236
NT+ L +L+ + G L +P + + + + R ++ ++ ++
Sbjct: 171 GYSASNTNHN-LCWLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMET 229
Query: 237 EMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILL 295
M L+L R +F+FS TGLAY+D+ NL +I + DGRK+I KR KTN I L
Sbjct: 230 PMEDKALELARRMFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPL 289
Query: 296 LEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
I I+ Y + + P+ S M + GI ++LT H+ARH
Sbjct: 290 HPIAEQIMSLYNTADDSKPVFPLSSRDSMWFEFHSLGVALGINENLTAHVARH 342
>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 392
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 92/358 (25%), Positives = 163/358 (45%), Gaps = 25/358 (6%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+ ++ + R +N EGK I + YLN+++ ST + + WD+++ +K H
Sbjct: 1 MEKVIYNLVFNRKKQLNAEGKALIQVEAYLNRQKRYF-STKVYVKPCQWDNKRRSIKNHP 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
D L +Y L V +L + ++ +L + E ++
Sbjct: 60 -------------NMDALNLY--LQNYVMELERDELEKRQANNGFSLKDLREEASSTSTS 104
Query: 121 VRVQVGITKTVATLQ-KYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAK 179
V + + + K K H + D+ F ++ + +FE FLL
Sbjct: 105 SSFLVFMREEILHSNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEYFLLKQEY 164
Query: 180 CRPNTSTKILKFLKT-ITIYGQKHGFLAHD-PFANKRFHLENTDRGFLTDEEIKNLIHKE 237
R NT K +K LK I + K F H PF + + + R LT EE+ L + +
Sbjct: 165 HR-NTIAKHMKHLKRYINLAINKELFELHKYPFRKYKIKYQESKRTHLTPEELGRLENLK 223
Query: 238 MASPR-LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI--- 293
+ R L D+FLFSC+TGL + D+ ++T++N + +D + W++ KT+++ +
Sbjct: 224 LDGQRTLRRCLDMFLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSVKTDVSVRLPLF 283
Query: 294 LLLEIPGM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
LL E + I E+Y+ + +P+ SN +N L+ I+ L I K ++FH ARH +
Sbjct: 284 LLFEGKSLPIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASIDKKVSFHTARHTN 341
>gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
Length = 396
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 101/360 (28%), Positives = 167/360 (46%), Gaps = 30/360 (8%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGH- 59
M ++ Y R +NK+G + + YL++++ ST + + + WD++K VK H
Sbjct: 1 MSKIIYNLVYNRKRSLNKKGMALVQVEAYLDRKKKYF-STKVYLKPEQWDNKKLIVKNHP 59
Query: 60 SAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNS 119
+A+AL NR I E A I L ++LE +K + TS+ TS + F +
Sbjct: 60 NADAL--NRLIYEFMAMIEKKELELWQQGRRISLELLK-DVLSTSENKTSFIPFFRQE-- 114
Query: 120 DVRVQVGITKTVATLQKYENCKR-HFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
+A E+ KR H + + D+ FS+LT I +FE FL +
Sbjct: 115 -----------IANSTLKESTKRNHLSTLSLLQQFKKDVTFSDLTFEFISSFEYFLQSRG 163
Query: 179 KCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTD--RGFLTDEEIKNLIHK 236
NT K +K LK ++ +A +++ ++ + L+ EE++ L
Sbjct: 164 Y-HTNTIAKHMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLSPEELEKLEKL 222
Query: 237 EMAS--PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI- 293
+A +L D FLF C+ G+ Y D +L+ DNIVE+ W++ K KT+ +
Sbjct: 223 SLAGRYTKLQKTLDAFLFCCYAGMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLP 282
Query: 294 --LLLEIPGM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
LL E G+ IL+KYR + + N +N L I+ L G+ K ++FH ARH +
Sbjct: 283 LYLLFEGKGLVILDKYRD--DLQSFFHLRDNSNVNKDLIVISRLAGLSKKISFHTARHTN 340
>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
43184]
gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
43184]
Length = 392
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 108/367 (29%), Positives = 176/367 (47%), Gaps = 42/367 (11%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+ ++ + R +N EGK I + YLN+++ ST + + WDS+++ V+ H
Sbjct: 4 MEKVIYNLVFNRKKRLNAEGKALIQVEAYLNRQKKYF-STKIYVKPTQWDSKRKAVRNHP 62
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVE------DLTLERIKSEYFGTSDTLTSVMELF 114
E+N+ IE D +T +R+++ + L R + ++ S + S M+
Sbjct: 63 -NMDELNQYIE----DYITYLERIELDMVQSGRPFSLKYLRERGDFESVSSSFVSFMK-N 116
Query: 115 EKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFL 174
E ++S++R+ +TL+ + + + Q+ + + F +LT + FE FL
Sbjct: 117 EINHSNLRL--------STLKNHLSTLQVLCQY------QPQVSFDDLTFNFLCGFEHFL 162
Query: 175 LTVAKCRPNTSTKILKFLKT-ITIYGQKHGF-LAHDPFANKRFHLENTDRGFLTDEEIKN 232
L K NT K +K LK + + K F L PF + + RG LT EE+
Sbjct: 163 LE-QKYHRNTIAKHMKHLKRYVNLAINKDLFELQKYPFRKYKIKYMESKRGHLTPEELGR 221
Query: 233 LIHKEMASPRLD--LVR--DIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTN 288
L E +P+L L R D+FLFSC+TGL + D+ N+ DN +D + W++ KT+
Sbjct: 222 L---ENIAPKLQRTLRRTLDMFLFSCYTGLRFSDIVNIRPDNFHLIDDKLWLVYSSVKTD 278
Query: 289 IATNI-LLLEIPGMILEKYRPV--RKERKL--LPVISNQKMNGYLKEIADLCGIKKHLTF 343
+ + L L G L Y R R L + V +N +N LK I L I K L+F
Sbjct: 279 VNVRLPLFLLFDGKALAVYERYCKRYSRTLFGVSVSANSNVNKQLKRICRLAEIDKRLSF 338
Query: 344 HMARHRD 350
HMARH +
Sbjct: 339 HMARHTN 345
>gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
Length = 393
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 161/353 (45%), Gaps = 28/353 (7%)
Query: 7 SVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEV 66
S+ Y R +NK+G + + YLN+++ ST + ++ WD +K VK H A +
Sbjct: 7 SLVYNRKKSLNKKGMALVQVEAYLNRKKKYF-STKVYLSPDQWDFKKRMVKNHP-NADAI 64
Query: 67 NRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVG 126
N + E A+I L + ++L+ +K+ D+ TS + F
Sbjct: 65 NHMLYEFMAEIEKKELGLWQQGKQISLDSLKNSMENQDDS-TSFIAFFRNE--------- 114
Query: 127 ITKTVATLQKYENCKR-HFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTS 185
+A E+ KR H + + D+ FSELT I +F+ +L NT
Sbjct: 115 ----IAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGY-HTNTI 169
Query: 186 TKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGF--LTDEEIKNLIHKEMAS--P 241
K +K LK ++ +A +++ +++ + L+ EE+ + E+
Sbjct: 170 AKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGGRFT 229
Query: 242 RLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI---LLLEI 298
+L+ +D FLF C+ GL Y D NL+ +NIV++ W++ K KTN + LL E
Sbjct: 230 KLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQETWLIYKSVKTNTEVRLPLYLLFEG 289
Query: 299 PGM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
G+ +L KY+ + + N +N L IA L G+ K ++FH ARH +
Sbjct: 290 KGIEVLNKYQDDLAD--FFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTN 340
>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
Length = 397
Score = 88.2 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 163/352 (46%), Gaps = 25/352 (7%)
Query: 7 SVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEV 66
++ + R +NK+G + + YLN+ ++ ST + + + WD+++ VKGH A +
Sbjct: 7 NLVFNRKKRLNKKGMALVQVEAYLNRRKIYF-STKIYLKPEQWDTKRRMVKGHP-NADVL 64
Query: 67 NRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVG 126
NR + E A I I L + ++LE +K S + F + ++ ++
Sbjct: 65 NRMLYEHIAAIEQIELGLWQQGKSISLELLKDSIDKPVSNGRSFLTFFREEVANSSLKE- 123
Query: 127 ITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTST 186
+T Q + + ++F K +++F++LT + +F+ +L + NT
Sbjct: 124 -----STRQNHLSTLELLQEFKK------EVQFTDLTFEFVSSFDNYLQSKGY-HLNTIA 171
Query: 187 KILKFLKTITIYGQKHGFLAHDPFANKRFHLENTD--RGFLTDEEIKNLIHKEMAS--PR 242
K +K LK ++ +A +++ +++ + L+ EE+ L ++ +
Sbjct: 172 KHMKHLKRYVNVAINKDYMDVQKYAFRKYKIKSVEGRHSHLSPEELHKLEDLQLGGKYAK 231
Query: 243 LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI---LLLEIP 299
L +D FLF C+ GL Y D NLT NIVE W++ K KT I + LL E
Sbjct: 232 LQKTKDSFLFCCYAGLRYSDFTNLTSANIVEFQQETWLIYKSVKTGIEVRLPLYLLFEGK 291
Query: 300 GM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
G+ IL++Y+ + + N +N L + L I K ++FH ARH +
Sbjct: 292 GIHILQRYKD--DLNRFFKLKDNSNINKELNILGKLAEIDKRISFHTARHTN 341
>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 396
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 94/360 (26%), Positives = 168/360 (46%), Gaps = 29/360 (8%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGH- 59
MK S+ + R +NK+G + + YLN+ ++ ST + + WD ++ VK H
Sbjct: 1 MKKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYF-STRVYLKPDQWDVKRRMVKNHP 59
Query: 60 SAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNS 119
+++AL NR + + ADI L ++L+ +K + S + F++ S
Sbjct: 60 NSDAL--NRMLYDFIADIEQKELGLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVS 117
Query: 120 DVRVQVGITKT-VATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
+ ++ + ++TL+ L +YK+ D+ F++LT + +F+ +L +
Sbjct: 118 NSSLKESTRQNHLSTLE------------LLQEYKK-DIVFTDLTFEFVSSFDNYLQSKG 164
Query: 179 KCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTD--RGFLTDEEIKNL--I 234
NT K +K LK ++ +A +++ +++ + L+ EE+ + +
Sbjct: 165 Y-HLNTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEV 223
Query: 235 HKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI- 293
+ E +L +D FLF C+ GL Y D NLT NIVEL W++ K KT I +
Sbjct: 224 NLEGKFTKLQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLP 283
Query: 294 --LLLEIPGM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
LL E G+ +LE Y+ + N +N L +A L I K ++FH ARH +
Sbjct: 284 LYLLFEGKGLRVLETYKD--DLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTN 341
>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
Length = 387
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 36/347 (10%)
Query: 16 INKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRA 75
INKEG P+ I YL KE++ + LS+ +DS+ ++G + EA ++N IE ++A
Sbjct: 12 INKEGNAPLYISFYLGKEKVVI-PCKLSVPTTKFDSKTGMLRGTNKEAKDINLIIERLKA 70
Query: 76 ---DILTIYKRLDVTVEDLTLERI---KSEYFGTSDTLTSVMELFEKHNSDVRVQVGITK 129
DIL ++ ++T+ R S++ D + S M+ + + R+++G
Sbjct: 71 KVNDILVKHRLKNLTLNKEAFMREYNNPSDFKSFHDFVASYMKTYSR-----RLEIG--- 122
Query: 130 TVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKIL 189
T + +++C R F+++ + L+F ELT + ++ L+ + K N +
Sbjct: 123 ---TFRHHKSCMRKFKEYCEG------LQFHELTEDFLRDY---LIYMKKTLCNADSTAQ 170
Query: 190 KFLKTITIY---GQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLI---HKEMASPRL 243
+ L TI IY K G++ +DPF + ++ +LT+EE+ I + RL
Sbjct: 171 RNLSTIKIYVSAAIKKGYMENDPFKDFGVKRIKSNIDYLTEEELIKFISLYYDRRLPERL 230
Query: 244 DLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM-I 302
+ FLF CFT L D ++ + I + + R A I L IP I
Sbjct: 231 ERTLGFFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAIKI-PLSIPAFKI 289
Query: 303 LEKYRPVRKERKLLPVIS-NQKMNGYLKEIADLCGIKKHLTFHMARH 348
+E+ + RKE L + +Q +N +KEIA + IKK ++ RH
Sbjct: 290 IEELQGKRKEGHLFTSLQCDQVVNRQIKEIASILEIKKKVSAKTGRH 336
>gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
Length = 406
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 72/350 (20%), Positives = 163/350 (46%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F + Y+ + + +G T +L RI ++ ++ + ST + + W+ +K ++K
Sbjct: 1 MRSTFSLLPYINRSKVKADGTTAVLCRITIDGKQTVI-STSIYCRPEDWNGKKNEIK--- 56
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
+ N +++E I Y+ + + ++ E +KS + T+++++ E
Sbjct: 57 --STRENNRLQEYLRIISEAYEEILKSQGVVSAEMLKSHITQNNIHPTTLLQMGEWERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
++ + ++ + +++ ++ S K+ D+ F E+T +++ +L
Sbjct: 115 LKKHSEEIDSTSSYRSSMYYQKYLTDYIVSSGKK-DICFEEVTEDFGKSYKAYLKRCKNF 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLE-NTDRGFLTDEEIKNLIHKEMA 239
+ + L++L + + +P + + +++ +E K ++ M
Sbjct: 174 GASQTNHCLRWLNRLLYLAVDKEIIRVNPCEELEYETKPEAKHRYISRDEFKKILSTPMY 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
RL+L R F+FSC TGLAY+D+ L +I + +GR++I R+KT + I L I
Sbjct: 234 DNRLELARRAFIFSCLTGLAYVDIQLLHPHHIGMNAEGRRYIRINRKKTKVEAFIPLHPI 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL Y E+ + P+ + + + E+ + G + +L++H +RH
Sbjct: 294 AEQILSLYNTADDEQPVFPLPNRDALWFEIHELGVIIGKEDNLSYHQSRH 343
>gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 403
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F + Y+ + + +G T IL RI ++ ++ ++ STG+ + W+S+K ++K
Sbjct: 1 MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAI-STGIYCRPEEWNSKKNEIK--- 56
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
++ N ++ E Y + + ++ E +K+ + T+++++ E
Sbjct: 57 --SVRENNRLREYLRLTEEAYNEILKSQGVVSAEILKNHISLNNIHPTTLLQMGEWERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
++ + ++ + +++ FL S K+ D+ E+T +++ L
Sbjct: 115 LKKHSEEIDSTSSCRSSMYYQKYLTDFLTSIGKK-DIPLEEVTEDFGKSYKAHLKKCKNF 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRG-FLTDEEIKNLIHKEMA 239
+ + L++L + L +P + + + R +++ EE K ++ M
Sbjct: 174 GASQTNHCLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMY 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
R++L R F+FS TGLAY+D+ L +I DGR++I R+KT + I L I
Sbjct: 234 DKRMELARRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPI 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL Y E+ + P+ + + + E+ G +++LT+H +RH
Sbjct: 294 AERILSLYNTTDDEKPVFPLPNRDALWFEVHELGITIGKEENLTYHQSRH 343
>gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149935815|gb|ABR42512.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 403
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 9/350 (2%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+S F + Y+ + + +G T IL RI ++ ++ ++ STG+ + W+S+K ++K
Sbjct: 1 MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAI-STGIYCRPEEWNSKKNEIK--- 56
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
++ N ++ E Y + + ++ E +K+ + T+++++ E
Sbjct: 57 --SVRENNRLREYLRLTEEAYNEILKSQGVVSAEILKNHISLNNIHPTTLLQMGEWERER 114
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
++ + ++ + +++ FL S K+ D+ E+T +++ L
Sbjct: 115 LKKHSEEIDSTSSYRSSMYYQKYLTDFLTSIGKK-DIPLEEVTEDFGKSYKAHLKKCKNF 173
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRG-FLTDEEIKNLIHKEMA 239
+ + L++L + L +P + + + R +++ EE K ++ M
Sbjct: 174 GVSQTNHCLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMY 233
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEI 298
R++L R F+FS TGLAY+D+ L +I DGR++I R+KT + I L I
Sbjct: 234 DKRMELARRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPI 293
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL Y E+ + P+ + + + E+ G +++LT+H +RH
Sbjct: 294 AERILSLYNTTDDEKPVFPLPNRDALWFEVHELGITIGKEENLTYHQSRH 343
>gi|67940331|ref|ZP_00532769.1| tyrosine type site-specific recombinase [Chlorobium
phaeobacteroides BS1]
gi|67913457|gb|EAM62867.1| tyrosine type site-specific recombinase [Chlorobium
phaeobacteroides BS1]
Length = 200
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 102/195 (52%), Gaps = 1/195 (0%)
Query: 1 MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHS 60
M+ F ++ + NK+G PI +R+ L+ R L ST I + WD+ + KG S
Sbjct: 1 MEHSMYITFRIKKSKANKKGLCPINLRLLLDSSRTEL-STHRFIAPESWDTNLGRAKGSS 59
Query: 61 AEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSD 120
EA+ +N ++ ++ + + L+ + +TL +K + G ++ ++++ FE HNSD
Sbjct: 60 DEAIILNNYLDNLKVKVQKQFNILESLGKPITLLTLKEKLDGKTEKKHTLIDEFEYHNSD 119
Query: 121 VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
++ ++ + + T +Y+ + ++F+ +Y D+ EL + +E++L TV C
Sbjct: 120 MKKRINLDVALGTYNRYKVSLKRIKEFINYQYGTNDILLEELNHAFLTKYEMYLKTVKHC 179
Query: 181 RPNTSTKILKFLKTI 195
NT+TK L LK +
Sbjct: 180 AQNTATKYLVRLKKV 194
>gi|29348887|ref|NP_812390.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340793|gb|AAO78584.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 427
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 156/336 (46%), Gaps = 27/336 (8%)
Query: 10 YLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNR- 68
Y++ Y+ +EG T + +R N+ + +L STG +I + WD++++ +K E++
Sbjct: 17 YIKPKYVTQEGTTVLYVRYNYNRNKRTLISTGYNIKPEHWDAKRKWIKRACPHYEEIDAC 76
Query: 69 --KIEEIRADILTIYK--RLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQ 124
KI DILT K +D TV+ + LE K+ + + + E++ V+
Sbjct: 77 LIKITSKLGDILTYAKVNGIDPTVDFVLLELEKNREYDLRPNRVDMFDALERY----IVE 132
Query: 125 VGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLL-TVAKCR-- 181
+ + ++ Y ++H F +Y + F L + F +L V K
Sbjct: 133 KAPSVSADQIKDYRTLRKHLTAF--KEYSSQPVTFRNLNLTFYNEFMDYLFHKVVKPNGT 190
Query: 182 ----PNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKE 237
N++ KI++ LK Y G + N + E TD +L ++E+ + +
Sbjct: 191 VGLLTNSAGKIIRLLKGFVNYQIVKGIIPPIDLKNFKVVEEETDAIYLNEKELAAIYELD 250
Query: 238 MASPR-LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLL 296
++ + L+ +RD+F+ CFTGL Y D++ L+ ++I +LD I K++K + A I ++
Sbjct: 251 LSDDKQLEEIRDVFITGCFTGLRYSDLSTLSPEHI-DLDNEN-INLKQRKVHKAVVIPMI 308
Query: 297 EIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIA 332
+ IL+KY LP I N +KE+
Sbjct: 309 DYVPEILKKY------NYDLPKIPRYMFNERVKELG 338
>gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
Length = 388
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 32/345 (9%)
Query: 16 INKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIEEIRA 75
+ KEG P+ I YL KE+L L +S+ A +D + +KG+S EA ++N + ++A
Sbjct: 13 LTKEGNAPLYITFYLGKEKLML-PCKVSVPAAKFDEKSGLLKGNSKEAKDINLIVSNLKA 71
Query: 76 DILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKH--NSDVRVQVGITKTVAT 133
+ I + + + LT + EY SD T + ++H R+++G T
Sbjct: 72 RVNDILVKFRLRNQALTKDIFMREYNNPSDYKT-FHDFVKEHMKTYSRRIEMG------T 124
Query: 134 LQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLK 193
+ + +C + F+ + L+F +LTP + + +L+ + K NT + +
Sbjct: 125 FKHHLSCMKKFKAY------NELLQFQDLTPDYLTD---YLIYMKKELGNTEITAQRNMS 175
Query: 194 TITIY---GQKHGFLAHDPFANKRFHLE--NTDRGFLTDEEIKNLI---HKEMASPRLDL 245
TI IY + G++ +PF + FH++ +D +LT+EE+ + ++ +L L
Sbjct: 176 TIKIYVTAAYRKGYIEENPF--QEFHIKRIKSDVDYLTEEELMQFVQLYYQRTLPEKLQL 233
Query: 246 VRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPG-MILE 304
FLF CFT + D + V D + K + + + +P +LE
Sbjct: 234 TLAFFLFMCFTSMHITDARMFCIEQ-VNNDVLTYYRVKNRNCKPEPIKIPMPVPAEKLLE 292
Query: 305 KYRPVRKERKLL-PVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++ R+E +L V +Q +N LK IA GI K ++ RH
Sbjct: 293 EWAEGREEGRLFRNVQCDQVVNRQLKAIAKELGINKKISAKTGRH 337
>gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
Length = 390
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 162/352 (46%), Gaps = 25/352 (7%)
Query: 7 SVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEV 66
++ + R +NK G + + YLN++++ ST + + + WD++++ VK H A +
Sbjct: 7 NLVFNRKKRLNKRGMALVQVEAYLNRKKMYF-STKIYLKPEQWDAKRKMVKNHP-NANVL 64
Query: 67 NRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVG 126
NR + E A I L + ++L+ +K+ S + F++ ++ ++
Sbjct: 65 NRMLYENIAAIEQTELGLWQQGKSISLDLLKNSIDKPLSNGRSFLTFFKEEIANSSLKE- 123
Query: 127 ITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTST 186
+T Q + + ++F K ++ F++LT + +F+ +L + NT
Sbjct: 124 -----STRQNHLSTLELLQEFKK------EVLFTDLTFEFVSSFDNYLQSKGY-HLNTIA 171
Query: 187 KILKFLKTITIYGQKHGFLAHDPFANKRFHLENTD--RGFLTDEEIKNLIHKEMAS--PR 242
K +K LK ++ +A +++ +++ + L EE+ + ++ R
Sbjct: 172 KHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQLTGRYTR 231
Query: 243 LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI---LLLEIP 299
L +D FLF C+ GL Y D NLT NIVE WI+ K KT + + LL E
Sbjct: 232 LQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLYLLFEGK 291
Query: 300 GM-ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRD 350
G+ IL++Y+ + N +N L +A L I K ++FH ARH +
Sbjct: 292 GIQILQRYKD--DFNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTN 341
>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
Length = 405
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 80/313 (25%), Positives = 134/313 (42%), Gaps = 35/313 (11%)
Query: 47 QLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDT 106
+L+ E K + E+ R+ E R+ L +ED ++ S ++ D
Sbjct: 44 ELYLYENPKTQAERQHNKEMLRQAEAARSARLVESHSNKFQLEDRV--KLASSFYEYYDK 101
Query: 107 LTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLI 166
LT+ E N + + G + L+S + R +L F EL
Sbjct: 102 LTASKESGSSSNYSIWISAG-------------------KHLRSYHGRAELTFEELDKKF 142
Query: 167 IHNFELFLL------TVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFAN-KRFHLEN 219
+ F +LL + +K NT++ ++ + G + +P K EN
Sbjct: 143 LEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNEAYREGIIRDNPVQRVKSVKAEN 202
Query: 220 TDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRK 278
T R +LT +E++ + E R D+++ FLFSC TGL + D+ LT I E DG
Sbjct: 203 TQRTYLTLDEVRAMTRAEC---RYDVLKRAFLFSCTTGLRWSDIQKLTWKEIEEFQDGHY 259
Query: 279 WIMTKRQK-TNIATNILLLEIP--GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLC 335
I+ K+ K N +++ L++P + L R + ER + + N L A L
Sbjct: 260 RIIFKQTKLLNAGNSLVYLDLPDSAVKLMGERQDKTERVFKGLKYSSYTNVALLHWAMLA 319
Query: 336 GIKKHLTFHMARH 348
G++KH+TFH+ RH
Sbjct: 320 GVQKHVTFHVGRH 332
>gi|156110579|gb|EDO12324.1| hypothetical protein BACOVA_01822 [Bacteroides ovatus ATCC 8483]
Length = 439
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 169/361 (46%), Gaps = 33/361 (9%)
Query: 10 YLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNR- 68
Y++ Y+ +EG T + +R N+ + +L STG SI + WDS+K +K E++
Sbjct: 29 YIKPRYVTREGTTVLYVRYNYNRTKRTLISTGYSIKPEHWDSKKRWIKRACPNYDEIDAC 88
Query: 69 --KIEEIRADILTIYK--RLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQ 124
+I +ILT K + TV+ + LE K+ + + + E++ ++
Sbjct: 89 LIRITSKLGEILTYAKINGISPTVDFVLLELKKNREYELRPNRVDIFDALERYITEKAPV 148
Query: 125 VGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRP-- 182
V + ++ Y ++H F ++ + F L LI +N + L +P
Sbjct: 149 V----SADQIKDYRTLRKHLIAF--KEHSSQPITFHNLN-LIFYNEFMDYLFYKVIKPDG 201
Query: 183 ------NTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHL--ENTDRGFLTDEEIKNLI 234
N++ KI++ LK Y G + P K F + E TD +L+++E+ +
Sbjct: 202 SVGLLTNSAGKIVRLLKGFVNYQIDKGVIP--PIDLKHFKVVEEETDAIYLSEKELSTIH 259
Query: 235 HKEMASPR-LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNI 293
+++ + L+ +RD+F+ CFTGL Y D++ L+ ++I +LD + I K++K + A I
Sbjct: 260 ELDLSDDKQLEEIRDVFITGCFTGLRYSDLSTLSPEHI-DLD-NEIINLKQRKVHKAVII 317
Query: 294 LLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHRDFYK 353
+++ IL+KY LP I N +KE+ +K+ + + ++ K
Sbjct: 318 PMIDYVPEILKKY------NYDLPKIPRYIFNERVKELGRRAKLKQKIEVVRKKGKEREK 371
Query: 354 R 354
R
Sbjct: 372 R 372
>gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 405
Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 79/313 (25%), Positives = 134/313 (42%), Gaps = 35/313 (11%)
Query: 47 QLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDT 106
+L+ E K + E+ R+ E R+ L +ED ++ S ++ D
Sbjct: 44 ELYLYENPKTQAERQHNKEMLRQAEAARSARLVESHSNKFQLEDRV--KLASSFYDYYDK 101
Query: 107 LTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLI 166
LT+ E N + + G + L+S + R +L F E+
Sbjct: 102 LTASKESGSSSNYSIWISAG-------------------KHLRSYHGRAELTFEEIDKKF 142
Query: 167 IHNFELFLL------TVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFAN-KRFHLEN 219
+ F +LL + +K NT++ ++ + G + +P K EN
Sbjct: 143 LEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNEAFREGIIRDNPVQRVKSVKAEN 202
Query: 220 TDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGRK 278
T R +LT +E++ + E R D+++ FLFSC TGL + D+ LT I E DG
Sbjct: 203 TQRTYLTLDEVRAMTKAEC---RYDVLKRAFLFSCTTGLRWSDIQKLTWKEIEEFQDGHY 259
Query: 279 WIMTKRQK-TNIATNILLLEIP--GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLC 335
I+ K+ K N +++ L++P + L R + ER + + N L A L
Sbjct: 260 RIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFKGLKYSSYTNVALLHWAMLA 319
Query: 336 GIKKHLTFHMARH 348
G++KH+TFH+ RH
Sbjct: 320 GVQKHVTFHVGRH 332
>gi|150007897|ref|YP_001302640.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
ATCC 8503]
gi|149936321|gb|ABR43018.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
ATCC 8503]
Length = 200
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 3/201 (1%)
Query: 1 MKSQFRSVFYLR--SNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKG 58
M ++ + FY++ + N G P++ +I + L+ S+ L ++ +LWD + + G
Sbjct: 1 MNNELKVSFYIKREKSATNACGIYPVIGKIIVGGT-LAQFSSKLKVDERLWDVKSGRATG 59
Query: 59 HSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHN 118
S +A+E+NR I I I YK + +T +K+ + G + T+V+ LFE+
Sbjct: 60 KSRQAVELNRAINRINLAIHASYKDILKRTGKVTAVEVKNAFQGVATAQTTVIALFEEMM 119
Query: 119 SDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
D + + GI + +T ++YE + FLK +Y +D+ F+EL I + + +
Sbjct: 120 RDFKARTGIDRAESTYKQYEVLHDQLKDFLKIQYHASDIPFTELDLPFIESLDFYFRVRR 179
Query: 179 KCRPNTSTKILKFLKTITIYG 199
K + T L + + G
Sbjct: 180 KMKARTVKSRLVLFNKVVLLG 200
>gi|86130630|ref|ZP_01049230.1| integrase [Cellulophaga sp. MED134]
gi|85819305|gb|EAQ40464.1| integrase [Dokdonia donghaensis MED134]
Length = 414
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 52/371 (14%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGH-- 59
KS ++ Y +S Y +EGK+ I STG I+ WD + ++ K +
Sbjct: 11 KSNQATLIYFQS-YFKEEGKSFIY-------------STGQRIHPADWDLKHKRPKKNPN 56
Query: 60 SAEALEVNRKIEEIRADILTIYKRLDVTVE----DLTLERIKSEY---FGTSDTLTS--- 109
E+ R +++ D + + RL V E LT++ + + F S + T+
Sbjct: 57 KIESGIAFRNLKKTLEDHVNLLDRLSVQYEMIDEKLTIDIARQAFDKEFKKSSSKTNGFF 116
Query: 110 -VMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIH 168
V ++F + + G + +T+++Y+ K+ ++F Y ++FS L +
Sbjct: 117 KVYDIFLEQKINDPTDKG--NSPSTIKRYQYNKKLLQEF--ESYLGKPIRFSALNQTVYQ 172
Query: 169 NFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDE 228
F F + V K NT ++ + LKT + +K+ + +D F N EN R F T+E
Sbjct: 173 TFLRFCIEVKKHSANTLSRNVGLLKTFLFWAEKNKYTYNDEFKN----FENVKR-FPTEE 227
Query: 229 ------EIKNLIHKEMAS-PRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIM 281
++K++ +++S RL+ VRD+F+ C TG Y + + L + ++ G +
Sbjct: 228 IAFNLNQVKDIYSVDLSSNTRLEKVRDLFILGCTTGFRYGNYSKLKKSDVY---GDFICV 284
Query: 282 TKRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHL 341
T + + + L EI ILEKY LP ISNQK N Y+KE+ +L G ++
Sbjct: 285 TDVKDPTKSLKVPLNEISKSILEKY------DFNLPSISNQKFNKYVKELFELLGFVENA 338
Query: 342 TFHMARHRDFY 352
M +D +
Sbjct: 339 RKSMKYGKDVH 349
>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
43184]
gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
43184]
Length = 310
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 6/225 (2%)
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTK 187
+K+ T + + F++S+ + D+ + LT ++ F L P T K
Sbjct: 41 SKSEGTYSNNRISDKQLDAFVRSRGEE-DILLTALTMDFFDDYR-FHLKKEGYAPATINK 98
Query: 188 ILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVR 247
L +L + G + +PF ++ FL+ ++ L+ + +L R
Sbjct: 99 HLCWLSRLMYRAVSQGTIRFNPFEEAKYEAVERKPRFLSKGDVAKLLAFPLQDEGAELSR 158
Query: 248 DIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEIPGMILEKY 306
+FLFS FTGLA+ D+ +L I + +G+++I RQKT + + I L I IL Y
Sbjct: 159 RMFLFSVFTGLAFADLQSLRVSQIEKNNEGKRYIRKARQKTEVESLIPLHPIAEQILSLY 218
Query: 307 --RPVRKERKLLP-VISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ + K+ P +S K+ +LK + CGI+ LT+H+ RH
Sbjct: 219 TKEESKGDYKIFPDTMSKGKLLTHLKAVGWACGIRTPLTWHVGRH 263
>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
Length = 248
Score = 71.6 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 189 LKFLKTITIYGQKHGFLAHDPFANKRFHL----ENTDRGFLTDEEIKNLIHKEMASPRLD 244
L LK I K G+ D + F L E T R L+ E + + E+ + R
Sbjct: 28 LAILKKICRLAYKEGYA--DRIHFQHFTLPKKTETTPRA-LSRESFERIRDVEIPAYRKS 84
Query: 245 --LVRDIFLFSCFTGLAYIDVANLTEDNI-VELDGRKWIMTKRQKTNIATNILLLEIPGM 301
L RD+FLF C+TG+ Y DV ++T +N+ + DG W+ +R+K + ++ LL
Sbjct: 85 HILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRASVKLLPEAIA 144
Query: 302 ILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
++EKY ++ L P++ + ++K +A L GIK L +H ARH
Sbjct: 145 LIEKYHSGDRD-TLFPLLHWSNLRRHMKALAALAGIKDDLCYHQARH 190
>gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
Length = 415
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 89/371 (23%), Positives = 153/371 (41%), Gaps = 36/371 (9%)
Query: 12 RSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKIE 71
R+ G P+ +RI + +R S L + A W+ ++++V ++ +N ++
Sbjct: 9 RTERTESNGYAPVRLRISHSGKR-KFVSLDLDVLASKWNDDRQRVTRSHPDSSRINARLS 67
Query: 72 EIRADILTIYKRLDVTVEDLTLERIKS--EYFGTSDTLTSVMELFEKHNSDVRVQVGITK 129
E+ + RL E +T RI+ + + S + F D
Sbjct: 68 EVESVAQRAVSRLQSAGEVITASRIQQVVKEELFGEEEESGYDDFIAFAWDEVEAYRRRD 127
Query: 130 TVATLQKYENCKRHFEQFLKSKYKRTD----LKFSELTPLIIHNFELFLLTVAKCRPNTS 185
+ T + Y R F FL+ + ++ L F LT +I F + V PNT
Sbjct: 128 QMTTFRHYRTGIRKFLGFLEDESGQSQEDITLSFDALTVQLIREFRNHMYEVRGNAPNTV 187
Query: 186 TKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRGFLTDEEIKNLIH---KEMASPR 242
K L +KT+ K G DP+ + + L EEI+ L E S R
Sbjct: 188 GKTLTQIKTMWNAAVKEGHADRDPWPKITIDSAPSQKEKLDFEEIEALEEVDLPEEGSER 247
Query: 243 LDLVRDIFLFSCF-TGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM 301
L D FLF+ + G+ + DVA L + L+G + I K +KT+ + +++
Sbjct: 248 RAL--DYFLFALYGGGMRFSDVATLKHKH---LEGGR-IQYKMKKTSEGAGVPIVDKAEA 301
Query: 302 ILEKY--RPVRKERKLLPVIS-----------------NQKMNGYLKEIADLCGIKKHLT 342
IL++Y RP E ++ P++ N +N LK++ I+ +LT
Sbjct: 302 ILDRYDNRPQEPESRVFPILDGYDLDEMEDVQRAIESRNAYVNRQLKKVRKKAEIETNLT 361
Query: 343 FHMARHRDFYK 353
FH++RH +K
Sbjct: 362 FHLSRHSAAWK 372
>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
266]
gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
266]
Length = 419
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Query: 157 LKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFH 216
+ F+ L + F+ +LL++ NT+ L +KT+ + G+L D + K
Sbjct: 103 IHFASLNSAWLERFKFYLLSLESISQNTAGGYLTSVKTVLRQAFREGYLIED-ISAKVPG 161
Query: 217 LENTD--RGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL 274
++ TD R FL E+++ L HK A ++++ FLF+CF+GL DV L + I ++
Sbjct: 162 IKKTDIQRHFLPVEQVEAL-HK--AKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQI 218
Query: 275 DGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKE------RKLLPVISNQKMNGYL 328
+G +I +++KT N+ L E IL++ R + E K+ + S +++ L
Sbjct: 219 NGAPYIQFRQRKTCQYENLPLSEQAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVL 278
Query: 329 KEIADLCGIKKHLTFHMARH 348
+ G+ L FH++RH
Sbjct: 279 EVWGIRAGLPFKLHFHVSRH 298
>gi|60681336|ref|YP_211480.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
gi|60492770|emb|CAH07544.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
Length = 404
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 85/362 (23%), Positives = 165/362 (45%), Gaps = 55/362 (15%)
Query: 18 KEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRK----IEEI 73
++G P++I+I ++++ + + + W++E + E + NR+ + E
Sbjct: 15 RDGSYPLVIQIIRHRKKREIYTP-----YRFWEAEF-NTRLEMVENVGGNRRRLLIVREA 68
Query: 74 RADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVAT 133
++ I K L+ L ++ G++ T+ ++ ++ HN +V V +A
Sbjct: 69 NEYLIYIKKELEAICGSLEADK------GSAYTVDDIVNVYNYHNDLSQVLVYADSVIAG 122
Query: 134 LQK---------YENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNT 184
L+ Y + +R FE FL + F ELTP ++ F FL RPNT
Sbjct: 123 LENKGRQGTAANYRSARRAFEMFLDG----SPFSFEELTPEVLDRFVTFLRERGN-RPNT 177
Query: 185 STKILKFLKTITIYGQKHG----FLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
+ L+ + I Y + F PF E T + ++ E+I + ++ +
Sbjct: 178 VSFYLRQWRAI--YNRACADHVVFSDQKPFRRLNLKEEVTSKRAISREKIAQIECVDLTA 235
Query: 241 PRLD--LVRDIFLFSCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLE 297
D L RD+FLFS +T G++++D+ L ++N L G ++ KRQKT I + +
Sbjct: 236 CHADMQLARDLFLFSFYTRGMSFVDMCYLNKEN---LQG-NYLRYKRQKTGQELQIRIEK 291
Query: 298 IPGMILEKYRPVRKERKLLPVISN-----------QKMNGYLKEIADLCGIKKHLTFHMA 346
+++++Y + LLP++ N +++N ++E+ D + LTF++A
Sbjct: 292 DLRVLIDRYASPLSDY-LLPMLRNGDRYQDYRRRQRRLNKLIRELGDRLQLDMPLTFYVA 350
Query: 347 RH 348
RH
Sbjct: 351 RH 352
>gi|150004298|ref|YP_001299042.1| integrase [Bacteroides vulgatus ATCC 8482]
gi|149932722|gb|ABR39420.1| integrase [Bacteroides vulgatus ATCC 8482]
Length = 451
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 97/375 (25%), Positives = 164/375 (43%), Gaps = 60/375 (16%)
Query: 15 YINKEGKTPILIRIYLNKERLSLG-STGLSINAQLWDSEKE--------KVKGHSAEALE 65
Y+ K G+ ++IR+ N ++ +G S G +I+ WDS+++ K+ G + A E
Sbjct: 11 YVMKNGQ--LMIRVRWNSKKNEVGFSVGYTIDPLKWDSDRQLVKSNTTHKISGKTVYARE 68
Query: 66 VNRKIEEIRADILTIYKRLDV-----TVEDLT------LERIKSEYFGTSDTLTSVMELF 114
+N I A I ++ + ++ T DL L RIK E + ++ ++F
Sbjct: 69 INSTIRSFIACIEEVFAKYNIHSAIPTTTDLKEQVNEKLGRIKEEEIVKENKSKTLKDIF 128
Query: 115 EKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLI----IHNF 170
+R Q G ++ Q + KY++ + + P I ++
Sbjct: 129 SDF-LRLRPQEG----------------NWSQNAQYKYEQMWHQLTGYDPKIELDTLNKD 171
Query: 171 ELFLLTVAKCRPN----TSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDRG--F 224
++ L + N T K K LK+ + ++G++ + L+ + F
Sbjct: 172 KMIQLMNWYIKNNYCNRTIVKQFKMLKSFLRWVSRNGYVIQPGVLEFKPKLKVIPKAVTF 231
Query: 225 LTDEEIKNLIHKEMASPR--LDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMT 282
L +E+ + H E + L RD+F F FT L Y D+A L N+V DG T
Sbjct: 232 LKYKELMHFFHFEFPKEKEHLSKARDMFCFMAFTSLRYSDLAALKPVNLV--DGYLDFCT 289
Query: 283 KRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLT 342
+KT+ +I L E I+EKY + + + PV SNQK+N YLKE A L G+ + ++
Sbjct: 290 --EKTDDKLHIALNEHAMKIIEKYSWYKGD-TIFPVPSNQKLNDYLKEAAKLAGLDREIS 346
Query: 343 ----FHMARHRDFYK 353
RH D YK
Sbjct: 347 QVYFKGNTRHEDTYK 361
>gi|156110994|gb|EDO12739.1| hypothetical protein BACOVA_01553 [Bacteroides ovatus ATCC 8483]
Length = 443
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 84/362 (23%), Positives = 160/362 (44%), Gaps = 40/362 (11%)
Query: 11 LRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKG------HSAEAL 64
L + I G P++ ++ N+ R L TG + +++D + K+K + E +
Sbjct: 46 LNKSRILNNGSYPLVFQVIHNR-RKKLLYTGYRVKEEVFDVSEGKIKNGAGSAFTATEVV 104
Query: 65 EVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSE-YFGTSDTLTSVMELFEKHNSDVRV 123
++NR + ++R I T ++L+ T E+ T+E I ++ FGT + ++ R
Sbjct: 105 KMNRGLRKLRNRIDTRIRQLERTREEFTVEDILAQNAFGTREPQFYLLRYINAQIERKRE 164
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
K V Y++ + +F+ R D++ SE+ + + FL + N
Sbjct: 165 ----LKKVGMAAAYKSTRSSLAKFI----SRPDVRMSEVDSAFVGRYGDFLYSNG-ASGN 215
Query: 184 TSTKILKFLKTITIYGQKHGFLAHD--PFANKRFHLENTDRGFLTDEEIKNLIHKEMAS- 240
T + L+ L+++ G+ PFA + T + L+ +++NL + +
Sbjct: 216 TVSYYLRNLRSLYNQAVADGYHPRGEYPFAKAQTRPAKTVKRALSRTDMQNLADLNLENE 275
Query: 241 PRLDLVRDIFLFSCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIP 299
P L+ RD++LFS + G+A++D+ L + +I + R K+ I +
Sbjct: 276 PELEFARDLYLFSFYAQGMAFVDIVLLRKADICN----GVLAYSRHKSKQLIRIAVTPQM 331
Query: 300 GMILEKYRPVRKERKLLPVISNQKMNGY-------------LKEIADLCGIKKHLTFHMA 346
+++KY+ L P+IS + +GY LK+IA IK LT + A
Sbjct: 332 QGLMDKYKT--GNEYLFPIISGEYASGYKQYRLALGRINRHLKKIAVAADIKVPLTTYTA 389
Query: 347 RH 348
RH
Sbjct: 390 RH 391
>gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
gi|149127798|gb|EDM19022.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
Length = 116
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 292 NILLLEIPGMILEKYRPVRK-ERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
NI +L + ILEKY+ V + KLLPV+SNQ+MN YLKEIAD+CG++K+L H ARH
Sbjct: 3 NIPVLPVAASILEKYKNVAECTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARH 60
>gi|53713070|ref|YP_099062.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52215935|dbj|BAD48528.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 404
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 85/362 (23%), Positives = 163/362 (45%), Gaps = 55/362 (15%)
Query: 18 KEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRK----IEEI 73
++G P++I+I ++++ + + + W++E + E + NR + E
Sbjct: 15 RDGSYPLVIQIIRHRKKREIYTP-----YRFWEAEF-NTRLEMVENVGGNRHRLPIVREA 68
Query: 74 RADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVAT 133
++ I K L+ L ++ G++ T+ ++ ++ HN +V V +A
Sbjct: 69 NEYLIYIKKELEAICRSLEADK------GSAYTVDDIVHVYNYHNDLTQVLVYADSVIAG 122
Query: 134 LQK---------YENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNT 184
L+ Y + +R FE FL F ELTP ++ F FL RPNT
Sbjct: 123 LENKEHQGTAANYRSARRAFEMFLDGG----PFSFEELTPEVLDRFVSFLRERGN-RPNT 177
Query: 185 STKILKFLKTITIYGQKHG----FLAHDPFANKRFHLENTDRGFLTDEEIKNLIHKEMAS 240
+ L+ + I Y + F PF E T + ++ E+I + ++ +
Sbjct: 178 VSFYLRQWRAI--YNRACADHVVFSDQKPFRRLNLKEEVTSKRAISREKIAQIECIDLTA 235
Query: 241 PRLD--LVRDIFLFSCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLE 297
D L RD+FLFS +T G++++D+ L ++N L G ++ KRQKT I + +
Sbjct: 236 CHADMQLARDLFLFSFYTRGMSFVDMCYLNKEN---LQG-NYLRYKRQKTGQELQIRIEK 291
Query: 298 IPGMILEKYRPVRKERKLLPVISN-----------QKMNGYLKEIADLCGIKKHLTFHMA 346
+++++Y + LLP++ N +++N ++E+ D + LTF++A
Sbjct: 292 DLRVLIDRYASPLSDY-LLPMLRNGDCYQDYRRRQRRLNKLIRELGDRLQLDMPLTFYVA 350
Query: 347 RH 348
RH
Sbjct: 351 RH 352
>gi|53713062|ref|YP_099054.1| probable truncated integrase [Bacteroides fragilis YCH46]
gi|52215927|dbj|BAD48520.1| probable truncated integrase [Bacteroides fragilis YCH46]
Length = 178
Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 50 DSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTS 109
D++ +V G S ALE NR +++++ I Y+ + +T E++K+ + G +
Sbjct: 23 DTKGGRVTGRSTVALETNRMLDKMQVRINRHYQEIMECDNFVTAEKVKNAFLGLEHRYHT 82
Query: 110 VMELFEKHNSDVRVQVGI-TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIH 168
+M++F +HN D Q K TL KY +H ++FL +Y D+ EL P +I
Sbjct: 83 LMQVFRQHNEDYEKQAEAGMKAKGTLLKYRTVYKHLQEFLNIRYHVKDIALKELIPALIS 142
Query: 169 NFELFLLTVAKCRPNTSTK 187
+FE ++ R NT+ +
Sbjct: 143 DFE-----ISCARTNTAAQ 156
>gi|29348545|ref|NP_812048.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340450|gb|AAO78242.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
Length = 403
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 146/350 (41%), Gaps = 15/350 (4%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+S F + Y+ + +G IL RI ++ + ++ STG+S Q W+++K +V+
Sbjct: 3 RSTFSILPYINRQKVKADGTANILCRITVDGKSAAI-STGISCTPQEWNAKKGEVRNARD 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
N ++ +I Y L V +T+E +K+ DT + F D
Sbjct: 62 -----NGRLASFLDEIKDKYNALLVANGIITVEMLKA-VLKDKDTTGRFLLSF----GDT 111
Query: 122 RVQ-VGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKC 180
V+ K T +++ F+ S + D+ F ++ ++LFL
Sbjct: 112 IVEWYRTAKARQTFLHKRTWQKNLRDFVHS-LDKDDIAFEDIDENFGEEYKLFLKRDQGR 170
Query: 181 RPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR-GFLTDEEIKNLIHKEMA 239
+ L +L + + +P A + + + ++ + ++ MA
Sbjct: 171 IDSYVNHCLLWLNMLMYKAVDRSIIRFNPIAKIGYEKKAAPKMTHISKADFIKMLSTPMA 230
Query: 240 SPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVE-LDGRKWIMTKRQKTNIATNILLLEI 298
R +L R F+F+ T L+YIDV L +I E +GRK+I +R+KT + + L I
Sbjct: 231 DERTELARRCFIFASLTSLSYIDVKKLYPRHISENSEGRKFIRKEREKTGVEFFVPLHPI 290
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
IL Y + + P+ + + + + + GI L FH +RH
Sbjct: 291 AEKILSLYNTTDDSKPVFPLGEKKDIYLDVHTLGMVLGISNKLGFHASRH 340
>gi|156107020|gb|EDO08765.1| hypothetical protein BACOVA_04621 [Bacteroides ovatus ATCC 8483]
Length = 424
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 38/299 (12%)
Query: 79 TIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYE 138
TI ++ D TL + +SE+ G S V + F + +++ TK + + YE
Sbjct: 88 TILRKFLEERVDWTLNQFESEFLGMSRQ-GKVYDYFMRQVENLKA----TKHIGNAKVYE 142
Query: 139 NCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIY 198
R ++ +R FSEL I+ F L + C NT LK L+ +
Sbjct: 143 RTLRMLAKYDPKIKERV---FSELDIKYINRFNL-EMEKDGCCGNTRKYYLKTLRAVMNR 198
Query: 199 GQKHGFLAHD--PFANKRFHL----ENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLF 252
K + PF F + E T++ +L ++++ L + + L+ R +FLF
Sbjct: 199 AIKEHEASSKTYPFGKNGFEIGCLEEETEKRYLQPKDLELLKNSPQTNFVLERARMLFLF 258
Query: 253 SCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM-----ILEKY 306
S + G++++D+A LT +NIV +G + I+ KR+KT N+ L IP ILE +
Sbjct: 259 SYYCYGMSFVDMAKLTTENIVVSEGIEHIVYKREKTKNVKNMKPLIIPVTPALKDILEWF 318
Query: 307 RPVRK--ERKLLPVISN---------------QKMNGYLKEIADLCGIKKHLTFHMARH 348
+ + LLP+I+ Q++N LK++ + GI+K+LT +++RH
Sbjct: 319 KQNTSLVGKYLLPIITKDYDGEQLYDHIRTRYQRLNNNLKKLGKILGIEKNLTTYVSRH 377
>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
Length = 385
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 82/318 (25%), Positives = 131/318 (41%), Gaps = 39/318 (12%)
Query: 59 HSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHN 118
H+ EAL R E +R+ L + +ED T ++ + +F D++T K N
Sbjct: 58 HNKEAL---RIAEAVRSKRLLESETSKHKLEDRT--KLSASFFDYYDSVTDSKASGSKSN 112
Query: 119 SDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
+ V G L+ + R +L F ++ + F+ +LL A
Sbjct: 113 YSIWVSAG-------------------HHLRRYHGRAELTFEDIDRAFLEGFKTYLLKSA 153
Query: 179 KCRP------NTSTKILKFLKTITIYGQKHGFLAHDPFAN-KRFHLENTDRGFLTDEEIK 231
+ NT + ++ + G + +P K E R +LT EEIK
Sbjct: 154 TTKSDQLLSRNTVSSYFNKIRAALNQAYQEGIIRDNPVRTVKSVKPETNQRVYLTLEEIK 213
Query: 232 NLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELD-GRKWIMTKRQK-TNI 289
+ E R D+++ FLFSC TGL + D+ L + E + G I+ K++K N
Sbjct: 214 AMAKAEC---RYDVLKRAFLFSCTTGLRWSDIQKLVWSEVEEFEQGHFRIIFKQKKIQNR 270
Query: 290 ATNILLLEIP--GMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMAR 347
T + L++P + L R ER + + N L A L GI KH+TFH R
Sbjct: 271 GTALQYLDLPDSAVRLMGERKDNDERVFKALRYSSYTNVALLHWAMLAGITKHVTFHAGR 330
Query: 348 HRDFYKRQIINRLNCLSI 365
H F Q+ L+ S+
Sbjct: 331 H-SFAVNQLARGLDIYSL 347
>gi|153809443|ref|ZP_01962111.1| hypothetical protein BACCAC_03757 [Bacteroides caccae ATCC 43185]
gi|149127903|gb|EDM19125.1| hypothetical protein BACCAC_03757 [Bacteroides caccae ATCC 43185]
Length = 203
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 2 KSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSA 61
+ + +F++ + K G+ PIL+RI +N + S+ +LW++ K KG
Sbjct: 3 QGTMKILFFVLKTKLLKNGEAPILMRITINGQ-YEETRIQRSVPLKLWNAAKGCSKGKDR 61
Query: 62 EALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDV 121
+ E+N + E+ L YK L + T I FG + +++ + ++
Sbjct: 62 ASNELNSYLSELATRALEKYKELILEQAISTPSLILKRVFGKDTEMRTLLGAIRQEIKEM 121
Query: 122 RVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLT-VAKC 180
V I T+ +Y+N + E + + Y + D+ F ELTP I F+L L T V C
Sbjct: 122 EKVVNIDYAPVTINRYKNVLKKLENSIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLC 181
Query: 181 RPNTSTKILKFLKTIT 196
R NT + +K K IT
Sbjct: 182 R-NTIVRYMKCFKKIT 196
>gi|150009131|ref|YP_001303874.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
ATCC 8503]
gi|149937555|gb|ABR44252.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
ATCC 8503]
Length = 422
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 93/375 (24%), Positives = 163/375 (43%), Gaps = 52/375 (13%)
Query: 11 LRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKV---KGHSAEALEVN 67
L + + K+G P+ +R+ + + STGL + WD E+ K E N
Sbjct: 8 LHTANLRKDGTYPVSLRV-IKYMKTKYCSTGLYAHLSEWDERAERFVNNKKICPMNKEYN 66
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
+I E+ A + + D D TL + + E+ T + F + + + +
Sbjct: 67 ARIIELVARAQAVILQFDRDGIDWTLNQFEEEF-----THKTKKGKFLDYANKIIKNLKE 121
Query: 128 TKTVATLQKYENCKRHFEQF---LKSKY-KRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
T T + YE + F LKS+ + D+K+ IH + F+ N
Sbjct: 122 TGHNTTSKIYEAVIHNLSLFDPKLKSRLLQEIDIKY-------IHAYNSFMEKRGWV-GN 173
Query: 184 TSTKILKFLKTITIYG--QKHGFLAHDPFANKRFHL----ENTDRGFLTDEEIKNLIHKE 237
T +K L+ I +K PF F + E T + +L++E +K LI +
Sbjct: 174 TRLHEMKTLRAILNRAILEKECTANFYPFGKGGFPISSLAEETRKRYLSEESLKKLIGTK 233
Query: 238 MASPRLDLVRDIFLFS--CFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILL 295
+ + + R +F+FS CF G++Y+D+ANL +DNI+ +G+++I+ KR KT N
Sbjct: 234 SNNKKNEEARLLFIFSYLCF-GMSYVDMANLKKDNIITENGKEYIIYKRHKTEHNKNAKF 292
Query: 296 LEIP-----GMILEKYRPVRK--ERKLLPVIS---------------NQKMNGYLKEIAD 333
++IP ILE + K +LP+++ K N YLK +A
Sbjct: 293 IKIPLGKDLKEILEWFFNNSKLLGDHILPLMTIDCTGDKLYDHLQRRRAKYNNYLKRLAT 352
Query: 334 LCGIKKHLTFHMARH 348
+ + +T +++RH
Sbjct: 353 EFELPEKITSYVSRH 367
>gi|83855510|ref|ZP_00949039.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
HTCC2559]
gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
HTCC2559]
Length = 405
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 80/363 (22%), Positives = 157/363 (43%), Gaps = 38/363 (10%)
Query: 11 LRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKI 70
LR + I+K G P+ +R+ + R S L ++ WD +K+KVK + + +N I
Sbjct: 8 LRKDKIDKTGDAPLYLRV-IKDRRTKFISLSLKLHPNEWDDDKQKVKKNHQNSTRLNAYI 66
Query: 71 EEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKT 130
+ AD L+ + + RIK G ++ F+ D ++ T T
Sbjct: 67 SKKVADAEGEIADLERRNQSTSARRIKEAIKG-----KPLINFFD-FAFDRCEKLKDTVT 120
Query: 131 VATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILK 190
++T + Y+N FE+F+ + +L F ++T + N+ + + T +
Sbjct: 121 LSTYRSYKNNIEKFERFVGHR----ELMFDDITATTLKNYASYCSSKLGNNNTTINYAFR 176
Query: 191 FLKTITIYGQKHGFLAHD--PFANKRFHLENTDRGFLTDEEIKNLIHKEMASP-RLDLVR 247
L + ++ ++++ PF + T + +L E+ ++ E+ + +++
Sbjct: 177 ILNLMFREAKREDLISNELAPFTKFKVKKNKTTKRYLNAEQFDAFMNLEVPDKHKAQVIK 236
Query: 248 DIFLFSCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGMILEKY 306
D+F+FS F+ GL + DV L N + + R I +KT +I + + ILEKY
Sbjct: 237 DMFIFSVFSGGLRFGDVIELQWKNYDKKNHR--ITKTIRKTKRQHSIRIGQKAIDILEKY 294
Query: 307 RPVR------------------KERKLLPVISNQKM---NGYLKEIADLCGIKKHLTFHM 345
K+R+ +I+N+ + N YL + + +L+FH+
Sbjct: 295 ASYDNSQNDIIFPFAKIDEQYFKDREHRSLITNRAISLSNMYLSRMGKQLELPFNLSFHI 354
Query: 346 ARH 348
+RH
Sbjct: 355 SRH 357
>gi|154492977|ref|ZP_02032603.1| hypothetical protein PARMER_02619 [Parabacteroides merdae ATCC
43184]
gi|154087282|gb|EDN86327.1| hypothetical protein PARMER_02619 [Parabacteroides merdae ATCC
43184]
Length = 402
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 29/241 (12%)
Query: 124 QVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPN 183
Q+G +T T Y+N FE+F + R D+ EL + +E +L C PN
Sbjct: 124 QIGKVRTAGT---YQNALNSFERF---RGHRGDIPLDELDSNQMITYESWLKGTGVC-PN 176
Query: 184 TSTKILKFLKTITIYGQKHGFLAH-DPFANKRFHLENTDRGFLTDEEIKNLIHKEMASPR 242
TS+ ++ L+ I G + +PF + ++ T + ++ I+ + ++
Sbjct: 177 TSSYYMRNLRAIYNRAVSEGLVVQRNPFKHVYTGIDKTKKRAVSLSVIRRIRDLDLNKKS 236
Query: 243 LDLVRDIFLFSCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGM 301
L RDIF+FS +T G++++D+A L + ++ + I+T R+K + E P
Sbjct: 237 LIFARDIFMFSFYTRGMSFVDMAFLKKKDL-----QNGILTYRRKKTGQQLFIKWEKPMQ 291
Query: 302 -ILEKYRPVRKERKLLPVISN-------------QKMNGYLKEIADLCGIKKHLTFHMAR 347
+++KY + LLP+I N ++N LK I G+ LT ++AR
Sbjct: 292 ELIDKYN-TSETSYLLPIIQNNGVDEWHQYQNEAHRINRNLKYIGKQIGLGIPLTTYVAR 350
Query: 348 H 348
H
Sbjct: 351 H 351
>gi|154495387|ref|ZP_02034392.1| hypothetical protein PARMER_04444 [Parabacteroides merdae ATCC
43184]
gi|154085311|gb|EDN84356.1| hypothetical protein PARMER_04444 [Parabacteroides merdae ATCC
43184]
Length = 76
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 261 IDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVIS 320
+D+ LT NIVE++G KWI++KR KT + + LL+ P I+E+YRP +++ + P ++
Sbjct: 1 MDIKELTNSNIVEVNGEKWILSKRYKTKVPFQVKLLDTPLQIIERYRPCQEDNLIFPNLN 60
Query: 321 NQKMNGYLKEIADLCG 336
+ LK+ CG
Sbjct: 61 YWSICKSLKKGMKECG 76
>gi|89891088|ref|ZP_01202596.1| putative integrase [Flavobacteria bacterium BBFL7]
gi|89516732|gb|EAS19391.1| putative integrase [Flavobacteria bacterium BBFL7]
Length = 364
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 17/289 (5%)
Query: 56 VKGHSAEAL---EVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVME 112
+KG +A+ +V ++ + + I + ++ D T+ +K + ++S
Sbjct: 5 IKGKGLQAIKNRDVQSQLNRYQTEFHKIISQYEILDMDFTIADVKGKLDLAFKKVSSRKT 64
Query: 113 LFEKHNSDVR-VQVGITKTVATLQKYENCKRHFEQFLKSK-YKRTDLKFSELTPLIIHNF 170
F+ ++ V+ ++ + AT+ +Y N K E F KSK YK L F+ + F
Sbjct: 65 FFDFYDEFVKEKKMNRDWSPATITRYANIKTILENFEKSKGYK---LSFNSINSTFHSEF 121
Query: 171 ELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLEN-TDRGFLTDEE 229
+ + K NT + L +KT + + +D F + T++ L E+
Sbjct: 122 TDYCMGTLKHINNTYARNLGLVKTFLFWALDKNYTYNDEFKKFKKKERVITNQVVLDKED 181
Query: 230 IKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNI 289
++ L+ + L+ VRD+F+FS TG+ + ++ +T+ NI + + ++
Sbjct: 182 LEKLMKHQFKLKSLERVRDVFVFSAVTGMRFGELKYVTKTNIT--NNTFHLKEEKGSEKE 239
Query: 290 ATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIK 338
+I L ++ ILEKY LP+I+NQK N Y+K++ + G K
Sbjct: 240 MRSIPLSKVAIHILEKY------DYKLPIIANQKHNEYIKDVFEDAGFK 282
>gi|150007898|ref|YP_001302641.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149936322|gb|ABR43019.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 402
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 73/306 (23%), Positives = 135/306 (44%), Gaps = 37/306 (12%)
Query: 69 KIEEIRADILTIYKRLDVTVEDLT--LERIKSEYFGTSDTLTSVMELFEKHNSD------ 120
K EE R + + K +D + + + R+K E + T +++L+ H
Sbjct: 57 KNEERRLYLTALKKHIDTDLFKIKECINRLKQE--NKTYTADRIVKLYSTHEGSYTFLLY 114
Query: 121 ---VRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTV 177
+ V++ V T Y N FE+FL + D+ + ++ +E +L
Sbjct: 115 GKGLLVELKKIGKVRTADTYRNALGSFERFLNDQ---ADIPLEAMDSNLMIAYESWLKGT 171
Query: 178 AKCRPNTSTKILKFLKTITIYGQKHGFLAH-DPFANKRFHLENTDRGFLTDEEIKNLIHK 236
C PNTS+ ++ L+ I + GF+ +PF + ++ T + ++ + I+ +
Sbjct: 172 GIC-PNTSSYYMRNLRAIYNRAVEQGFVTQQNPFKHVYTGIDKTKKRAVSLDVIREIRDL 230
Query: 237 EMASPRLDLVRDIFLFSCFT-GLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILL 295
++ L RDIFLFS +T G++++D+A L + ++ + +R KT I
Sbjct: 231 KLTKKSLVFARDIFLFSFYTRGMSFVDMAFLKKQDL----QNGILAYRRNKTGQQLFIKR 286
Query: 296 LEIPGMILEKYRPVRKERKLLPVISN-------------QKMNGYLKEIADLCGIKKHLT 342
+ +++KY LLPVI N ++N LK+I L G+ LT
Sbjct: 287 EKTMQELIDKYDTFDTPY-LLPVIRNNGVDEWHQYQNAAHRINRNLKQIGKLIGLDIPLT 345
Query: 343 FHMARH 348
++ARH
Sbjct: 346 TYVARH 351
>gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
Length = 390
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 167 IHNFELFLLTVAKCRP---NTSTKILKFLKTITIYGQKHGFLAHDPF----ANKRFHLEN 219
+ NF + + RP NT+++ L T + G + ++P A +R +
Sbjct: 153 LRNFPNSHIKYGEPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPKE 212
Query: 220 TDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVEL-DGR- 277
+ +LT EE++ LI + P V++ F+F+CFTGL D+ L +I + DG+
Sbjct: 213 GKKEYLTIEELRTLIATDSYRPE---VKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKG 269
Query: 278 KWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGY-LKEIADLCG 336
++I + QKT I L E L K P + + + Q + G L + A+ G
Sbjct: 270 EYIDMEMQKTEKPVIIPLSEEAKRWLPK--PRGNDIPFFDIPTTQTVIGRALHKWAEAAG 327
Query: 337 IKKHLTFHMARH 348
I+KH++FH +RH
Sbjct: 328 IEKHISFHCSRH 339
>gi|67941223|ref|ZP_00533435.1| transposase [Chlorobium phaeobacteroides BS1]
gi|67912564|gb|EAM62200.1| transposase [Chlorobium phaeobacteroides BS1]
Length = 118
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 314 KLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
KLLPV SNQ+MNGYLKEIAD+ GI K+LT H+ARH
Sbjct: 23 KLLPVNSNQRMNGYLKEIADITGITKNLTMHLARH 57
>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
Length = 392
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 14/206 (6%)
Query: 154 RTDLKFSELTPLIIHNFELFLLTVAKCRP------NTSTKILKFLKTITIYGQKHGFLAH 207
+ DL F EL + F+ +L AK + NT + ++ + G +
Sbjct: 131 KHDLSFDELDKDWLDGFKYYLTNEAKTKSDTALSHNTQSSYFNKVRAAINEAHREGIIRD 190
Query: 208 DPFAN-KRFHLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANL 266
+P + + T R +LT +E+ L H E P +++ FLFSC TG+ + D+ L
Sbjct: 191 NPLSQVTSIKAKTTKRVYLTLDEVNALAHTECRYP---VLKRAFLFSCATGMRWCDIHRL 247
Query: 267 TEDNIVELDGRKWIMTKRQKTNI--ATNILLLEIP--GMILEKYRPVRKERKLLPVISNQ 322
T + + K I+ + K + A ++ L+IP L ER + +
Sbjct: 248 TWSEVETFNNHKRIIFDQAKLSQGDAKSLQYLDIPKSAESLLGSPKASHERVFKGLKYSS 307
Query: 323 KMNGYLKEIADLCGIKKHLTFHMARH 348
+N L A GI KH+TFH RH
Sbjct: 308 YINVELLRWALAAGISKHVTFHAGRH 333
>gi|150007399|ref|YP_001302142.1| transposase [Parabacteroides distasonis ATCC 8503]
gi|149935823|gb|ABR42520.1| transposase [Parabacteroides distasonis ATCC 8503]
Length = 402
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 44/335 (13%)
Query: 40 TGLSINAQLWDSEKEKVKGH-SAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKS 98
T + A WD E V H + E N + I + I +RL+ + L+ +S
Sbjct: 35 TDYKLFASEWDIHSEAVAMHCTPNEQERNNYLLSIGSRIRWDKERLNKIIHTLS----QS 90
Query: 99 EYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQK---------YENCKRHFEQFLK 149
F T D V+ F ++ ++ I++ VA L++ Y R F F+
Sbjct: 91 GTFVTDD----VVMRFHENRQELSFNAYISQQVARLKRLGKIRTSETYTAALRSFSSFMN 146
Query: 150 SKYKRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAH-D 208
T++ F +L + +E +L PNT + ++ LK + ++G
Sbjct: 147 D----TEVLFDQLNADLFAEYEAYLKGRGNT-PNTISFYMRILKAVYNRAVENGLTEQRH 201
Query: 209 PFANKRFHLENTDRGFLTDEEIKNLIHKEMA-SPRLDLVRDIFLFSCFT-GLAYIDVANL 266
PF + +E T + L+ +I+ + +++ P LD D+FLF +T G+++ID+A L
Sbjct: 202 PFKSVYTGVEKTMKRALSLNDIRRIKGLDLSLKPNLDYACDMFLFCFYTRGMSFIDMAYL 261
Query: 267 TEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVISN----- 321
+ ++ L+G + +R+KT I + I++KY P+ + LLP+I+
Sbjct: 262 RKKDL--LNGT--LSYRRRKTGQQLFIKWEKCMQEIVDKY-PINETEYLLPIITKHDEDY 316
Query: 322 --------QKMNGYLKEIADLCGIKKHLTFHMARH 348
++N LK+I L + LT ++ RH
Sbjct: 317 RKQYTNELHRVNHLLKKIGKLLDLPIPLTMYVGRH 351
>gi|120435520|ref|YP_861206.1| phage integrase family protein [Gramella forsetii KT0803]
gi|117577670|emb|CAL66139.1| phage integrase family protein [Gramella forsetii KT0803]
Length = 443
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 165/395 (41%), Gaps = 65/395 (16%)
Query: 11 LRSNYINKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALEVNRKI 70
LR N K+G+ P+ +RI N + + G S+ + WD KVK ++N +
Sbjct: 8 LRKNMKKKDGRIPLALRISENY-KTNYVWLGHSVFEKDWDDVACKVKKTHPNFKQLNNFL 66
Query: 71 EEIRADILTIYKRLDVTVE------------------DLTLERIKSEY----FGTSDTLT 108
+ ++ IY + + + E I+S+Y F +
Sbjct: 67 MKRMIEVNDIYFNAEKKITPRQIKQKLKGPDGSKSFFTVATEHIQSKYDTGVFSVAKAQL 126
Query: 109 SVM----ELFEKHNSDVRVQVGITKTVATLQKYENCKR---HFEQFLKSKYKRTDLKFSE 161
S++ E + NS + ++ L++ +R H+ + K +L+F +
Sbjct: 127 SILYNIEEFIQLKNSRSKAKIIQEIKQRRLKRVSEARRSKYHWMDGVAYFKKNDNLRFRD 186
Query: 162 LTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHD--PFA--NKRFHL 217
+ I ++ F + +P T T L F++T+ K G +A PFA ++ +
Sbjct: 187 IDESFIRKYKTFCSSYLNHKPRTITNQLIFIRTLYNIAIKEGVIAQKYYPFAGEKEKIRI 246
Query: 218 ENTDRGFLTDEEIKNLIHKEMASPR-LDLVRDIFLFSC-FTGLAYIDVANLTEDNIVELD 275
+ ++ L EEI+ + E+ R + +I+LFS F G+ DV L + + +
Sbjct: 247 SSGNKIGLNVEEIEKIESLELEKYRTIWHTHNIWLFSFYFAGMRISDVIKLKWSDFKD-N 305
Query: 276 GRKWIMTKRQKTNIATNILLLEIPG---MILEKYRPVRKERK--LLPVI----------- 319
++M K K L L+IP +I++ YRP +K L P +
Sbjct: 306 RLYYVMEKNGKP------LSLKIPDKARIIIDYYRPDKKFNNGYLFPFLREVDQTQAEQI 359
Query: 320 ------SNQKMNGYLKEIADLCGIKKHLTFHMARH 348
+ + +N YLK IA LCGI K L+ H+ARH
Sbjct: 360 YTRTKSTTKLLNKYLKRIAKLCGIDKTLSNHIARH 394
>gi|1263306|gb|AAB06447.1| integrase IntN1 [Bacteroides uniformis]
Length = 445
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 89/365 (24%), Positives = 163/365 (44%), Gaps = 46/365 (12%)
Query: 17 NKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALE----VNRKIEE 72
+ E I +R ++ S+ T L+IN LWD + E VK + E +N +I +
Sbjct: 15 DTESMATIYVRFRNGRQLDSVAPTQLAINPNLWDDKDECVKTKAVCNEEMRTHINEEIRQ 74
Query: 73 IRADILTIYKR----LDVTVEDLTLERI--KSEYFGTSDTLT--SVMELFE----KHN-S 119
++ I +Y++ +D TL++ +YF + + ++ ELF+ KH S
Sbjct: 75 LKTYIEKVYQQEKEAIDKEWLKTTLDKFYHPEKYFLPEEVVIKPTIGELFDEFLNKHPLS 134
Query: 120 DVRVQVGITKTVATLQKYE----NCKRHFEQFLKS-------------KYKRTDLKFSEL 162
+VR + L +YE KR + F+ + + + ++ EL
Sbjct: 135 EVRKK-NFRVVKRALLRYELYVRATKRGQKGFILDVDLVTPDTLRDMWDFFQNEYQYYEL 193
Query: 163 TPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR 222
P I + + NT ++T ++ + + PF +F +E
Sbjct: 194 YPSIYEAIPEKRTPQPRSK-NTLIDCFSRIRTFFLWCFDNKRTTNRPF--DKFPIEECTY 250
Query: 223 G---FLTDEEIKNLIHKEM-ASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRK 278
G ++T EE + + ++ A+P+L + RDIF+F G D+ +T+ N+V + +
Sbjct: 251 GTPYYITLEERDRIFNADLSATPQLAIQRDIFIFQTLIGCRVSDLYRMTKLNVVN-EAIQ 309
Query: 279 WIMTKRQKTN-IATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGI 337
+I K ++ N + + L + ILE+Y+ E KLLP IS QK N +K+I L G+
Sbjct: 310 YIPKKTKEGNPVTVRVPLNDKAKEILERYK--EYEGKLLPFISEQKYNDAIKKIFKLAGV 367
Query: 338 KKHLT 342
+ +T
Sbjct: 368 DRIVT 372
>gi|54307145|ref|YP_133699.1| IntN1 [Bacteroides uniformis]
gi|8308020|gb|AAF74437.1|AF238307_1 IntN1 [Bacteroides uniformis]
gi|156862591|gb|EDO56022.1| hypothetical protein BACUNI_00309 [Bacteroides uniformis ATCC 8492]
Length = 445
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 89/365 (24%), Positives = 163/365 (44%), Gaps = 46/365 (12%)
Query: 17 NKEGKTPILIRIYLNKERLSLGSTGLSINAQLWDSEKEKVKGHSAEALE----VNRKIEE 72
+ E I +R ++ S+ T L+IN LWD + E VK + E +N +I +
Sbjct: 15 DTESMATIYVRFRNGRQLDSVAPTQLAINPNLWDDKDECVKTKAVCNEEMRTHINEEIRQ 74
Query: 73 IRADILTIYKR----LDVTVEDLTLERI--KSEYFGTSDTLT--SVMELFE----KHN-S 119
++ I +Y++ +D TL++ +YF + + ++ ELF+ KH S
Sbjct: 75 LKTYIEKVYQQEKEAIDKEWLKTTLDKFYHPEKYFLPEEVVIKPTIGELFDEFLNKHPLS 134
Query: 120 DVRVQVGITKTVATLQKYE----NCKRHFEQFLKS-------------KYKRTDLKFSEL 162
+VR + L +YE KR + F+ + + + ++ EL
Sbjct: 135 EVRKK-NFRVVKRALLRYELYVRATKRGQKGFILDVDLVTPDTLRDMWDFFQNEYQYYEL 193
Query: 163 TPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHDPFANKRFHLENTDR 222
P I + + NT ++T ++ + + PF +F +E
Sbjct: 194 YPSIYEAIPEKRTPQPRSK-NTLIDCFSRIRTFFLWCFDNKRTTNRPF--DKFPIEECTY 250
Query: 223 G---FLTDEEIKNLIHKEM-ASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRK 278
G ++T EE + + ++ A+P+L + RDIF+F G D+ +T+ N+V + +
Sbjct: 251 GTPYYITLEERDRIFNADLSATPQLAIQRDIFIFQTLIGCRVSDLYRMTKLNVVN-EAIE 309
Query: 279 WIMTKRQKTN-IATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGI 337
+I K ++ N + + L + ILE+Y+ E KLLP IS QK N +K+I L G+
Sbjct: 310 YIPKKTKEGNPVTVRVPLNDKAKEILERYK--EYEGKLLPFISEQKYNDAIKKIFKLAGV 367
Query: 338 KKHLT 342
+ +T
Sbjct: 368 DRIVT 372
>gi|150003290|ref|YP_001298034.1| integrase [Bacteroides vulgatus ATCC 8482]
gi|149931714|gb|ABR38412.1| integrase [Bacteroides vulgatus ATCC 8482]
Length = 407
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 78/331 (23%), Positives = 135/331 (40%), Gaps = 35/331 (10%)
Query: 39 STGLSINAQLWDSEKEK---VKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLER 95
+T + I + W+ K + V G+ ++ E+ DI I + LD + E TL
Sbjct: 34 TTDMRIFPEWWNETKRELVAVPGNERVLTAYRKRAEKEMRDIREIIRELDCSGETYTLSE 93
Query: 96 IKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRT 155
I + Y S + K + + G T + Y F FL
Sbjct: 94 ILNRY--RSLPSEPGFLYYMKKEMETLWENG---QYGTSRNYRRALNSFSAFLDGD---- 144
Query: 156 DLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHD-PFANKR 214
D+ FS L + +E +L R N+S+ ++ L+ + K G PF
Sbjct: 145 DIPFSSLDSALACRYESWLWQQKVAR-NSSSFYMRILRAVYNKAVKQGLAVQTFPFREVY 203
Query: 215 FHLENTDRGFLTDEEIKNLIHKEMA-SPRLDLVRDIFLFS-CFTGLAYIDVANLTEDNIV 272
+ T + + +E I+ L +++ SP L L RD+F+FS C G+A++D+A L ++++
Sbjct: 204 TGVARTSKRAVDEETIRKLQRLDLSGSPALALSRDMFVFSYCARGMAFVDMAYLKKEDV- 262
Query: 273 ELDGRKWIMTKRQKTNIATNILLLEIPGMILEKY-RPVRKERKLLPVISNQK-------- 323
G I R KT + + ILE+Y R + L P++++++
Sbjct: 263 ---GGGRITYYRHKTGQYLTLRIEPCMVTILERYGRTCPESPYLFPILTDEQPELAYRQY 319
Query: 324 ------MNGYLKEIADLCGIKKHLTFHMARH 348
N LK + L G L+ + RH
Sbjct: 320 RTGLNYHNRKLKRLGKLLGEPLPLSSYTPRH 350
>gi|156860532|gb|EDO53963.1| hypothetical protein BACUNI_02584 [Bacteroides uniformis ATCC 8492]
Length = 404
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 78/331 (23%), Positives = 135/331 (40%), Gaps = 35/331 (10%)
Query: 39 STGLSINAQLWDSEKEK---VKGHSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLER 95
+T + I + W+ K + V G+ ++ E+ DI I + LD + E TL
Sbjct: 34 TTDMRIFPEWWNETKRELVAVPGNERVLTAYRKRAEKEMRDIREIIRELDCSGETYTLSE 93
Query: 96 IKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRT 155
I + Y S + K + + G T + Y F FL
Sbjct: 94 ILNRY--RSLPSEPGFLYYMKKEMETLWENG---QYGTSRNYRRALNSFSAFLDGD---- 144
Query: 156 DLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLAHD-PFANKR 214
D+ FS L + +E +L R N+S+ ++ L+ + K G PF
Sbjct: 145 DIPFSSLDSALACRYESWLWQQKVAR-NSSSFYMRILRAVYNKAVKQGLAVQTFPFREVY 203
Query: 215 FHLENTDRGFLTDEEIKNLIHKEMA-SPRLDLVRDIFLFS-CFTGLAYIDVANLTEDNIV 272
+ T + + +E I+ L +++ SP L L RD+F+FS C G+A++D+A L ++++
Sbjct: 204 TGVARTSKRAVDEETIRKLQRLDLSGSPALALSRDMFVFSYCARGMAFVDMAYLKKEDV- 262
Query: 273 ELDGRKWIMTKRQKTNIATNILLLEIPGMILEKY-RPVRKERKLLPVISNQK-------- 323
G I R KT + + ILE+Y R + L P++++++
Sbjct: 263 ---GGGRITYYRHKTGQYLTLRIEPCMVTILERYGRTCPESPYLFPILTDEQPELAYRQY 319
Query: 324 ------MNGYLKEIADLCGIKKHLTFHMARH 348
N LK + L G L+ + RH
Sbjct: 320 RTGLNYHNRKLKRLGKLLGEPLPLSSYTPRH 350
>gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32]
gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32]
Length = 389
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 68/294 (23%), Positives = 116/294 (39%), Gaps = 37/294 (12%)
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
+K E IRA L + ++D T ++ + +F D +T+ K N + V GI
Sbjct: 65 QKAEAIRAKRLLEMESAKHGLDDST--KLNASFFDYFDQVTASKASGSKSNYSIWVSAGI 122
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRP----- 182
H ++ ++ +L F ++ + F +L A +
Sbjct: 123 ---------------HLHRY----HRHAELTFEQIDKYFLEGFRHYLQHEAITKSDTGLS 163
Query: 183 -NTSTKILKFLKTITIYGQKHGFLAHDPFAN-KRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+ ++ Q+ + +P K E T R +LT +E+K L E
Sbjct: 164 RNTACSYFNKIRAALNQAQRDRIIRDNPVEQVKSIKAERTQRTYLTLDEVKALTKAEC-- 221
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLT--EDNIVELDGRKWIMTKRQKTNIATNILLLEI 298
R D++R FLFSC TGL + D+ L E + + I ++ + N + L++
Sbjct: 222 -RYDVLRRAFLFSCTTGLRWSDIHKLVWGEIELFSQGHYRIIFSQIKLKNSGNGLQYLDL 280
Query: 299 PGMILEKYRPVRKERKLLPVISNQKMNGY----LKEIADLCGIKKHLTFHMARH 348
P + K + V + + Y L + A GI KH+TFH RH
Sbjct: 281 PDSAVRLLNLENKGKPTERVFKGLRYDSYSNVALVQWAIRAGITKHVTFHAGRH 334
>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
Length = 386
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 42/301 (13%)
Query: 59 HSAEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHN 118
+A+ +++ R+ E + D+ +++ E L ++RI F +E F+K
Sbjct: 68 QTAQLIQIRRQNELRKDDVYNEFEK-----EQLEIQRISRGSF---------LEYFKKIR 113
Query: 119 SDVRVQVGITKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVA 178
+VG + + ++ HFE FLK DL F E+T +I +++ +LL A
Sbjct: 114 DK---KVGKNRLI-----WDTAIVHFEAFLKG----NDLTFKEVTVTLIEDYKEYLLK-A 160
Query: 179 KCRPNTSTKILKF--------LKTITIYGQKHGFLAHDPFAN-KRFHLENTDRGFLTDEE 229
K R N S+ I + LKT K L D A + + R FLT +E
Sbjct: 161 KNRKNNSSTIARNTALSYHNKLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKE 220
Query: 230 IKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNI--VELDGRKWIMTKRQKT 287
K L P+ +V I FS TGL Y D+A LT + I +E DG +++
Sbjct: 221 AKKLF--STPCPK-RIVHQISKFSVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTE 277
Query: 288 NIATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMAR 347
+ T + E ++ EK +PV K K+ + ++ L GI KH+TFH R
Sbjct: 278 GLQTIPISNEAYEILAEKAQPV-KTGKVFFDLKKWDVDRALPVWIARAGIVKHITFHCFR 336
Query: 348 H 348
H
Sbjct: 337 H 337
>gi|53714058|ref|YP_100050.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
gi|52216923|dbj|BAD49516.1| tyrosine type site-specific recombinase [Bacteroides fragilis
YCH46]
Length = 379
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 24/214 (11%)
Query: 154 RTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLA---HDPF 210
+ L F E+TP I +E +L+ K R NT + ++ L++I + + + F
Sbjct: 112 KASLTFEEITPESIKEYEQYLILNGK-RYNTISLYMRMLRSICNQASEQNIASLNTRELF 170
Query: 211 ANKRFHLENTDRGFLTDEEIKNLIHKEMA-SPRLDLVRDIFLFSCF-TGLAYIDVANLTE 268
N E T + ++ I L+ + + + RLD RD+FL S + G+ ++D+ +L +
Sbjct: 171 ENVFIGNEPTAKRAISPAIISRLLEADFSKNSRLDFARDLFLLSFYLRGIPFVDLVHLRK 230
Query: 269 DNIVELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKER-KLLPVISNQKMNGY 327
++ ++ RQKT +++ +IL KY + KE LLPVIS G+
Sbjct: 231 TDV----QGNMLVYFRQKTGQQLTVIIENCAKVILRKYASLCKESVYLLPVISAAGEEGH 286
Query: 328 -------------LKEIADLCGIKKHLTFHMARH 348
L +I+ + +K LT ++ARH
Sbjct: 287 KQYRSALRVYNKRLNQISGILKLKTPLTSYVARH 320
>gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39]
gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39]
Length = 392
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 69/294 (23%), Positives = 116/294 (39%), Gaps = 37/294 (12%)
Query: 68 RKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGI 127
+K E IRA L + ++D T ++ + +F D +T+ K N + V GI
Sbjct: 65 QKAEAIRAKRLLEMESAKHGLDDRT--KLNASFFDYFDQITASKASGSKSNYSIWVSAGI 122
Query: 128 TKTVATLQKYENCKRHFEQFLKSKYKRTDLKFSELTPLIIHNFELFLLTVAKCRP----- 182
H ++ ++ +L F ++ + F +L A +
Sbjct: 123 ---------------HLHRY----HRHAELTFEQVDKYFLEGFRHYLQHEAMTKSDTGLS 163
Query: 183 -NTSTKILKFLKTITIYGQKHGFLAHDPFAN-KRFHLENTDRGFLTDEEIKNLIHKEMAS 240
NT+ ++ Q+ + P K E T R +LT +E+K L E
Sbjct: 164 RNTACSYFNKIRAALNQAQRDRIIRDTPVEQVKSIKAERTQRTYLTLDEVKALTKAEC-- 221
Query: 241 PRLDLVRDIFLFSCFTGLAYIDVANLT--EDNIVELDGRKWIMTKRQKTNIATNILLLEI 298
R D++R FLFSC TGL + D+ L E + + I ++ + N + L++
Sbjct: 222 -RYDVLRRAFLFSCTTGLRWSDIHKLVWGEIELFAQGHYRIIFSQIKLKNSGNGLQYLDL 280
Query: 299 PGMILE----KYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARH 348
P + + R ER + + N L + A GI KH+TFH RH
Sbjct: 281 PDSAVRLLNLENRGKPTERVFKGLRYDSYSNVALVQWAIRAGITKHVTFHAGRH 334
>gi|60682252|ref|YP_212396.1| putative recombinase/integrase [Bacteroides fragilis NCTC 9343]
gi|60493686|emb|CAH08475.1| putative recombinase/integrase [Bacteroides fragilis NCTC 9343]
Length = 379
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 24/214 (11%)
Query: 154 RTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITIYGQKHGFLA---HDPF 210
+ L F E+TP I +E +L+ K R NT + ++ L++I + + + F
Sbjct: 112 KASLTFEEITPESIKEYEQYLILNGK-RYNTISLYMRMLRSICNQASEQNIASLNTRELF 170
Query: 211 ANKRFHLENTDRGFLTDEEIKNLIHKEMA-SPRLDLVRDIFLFSCF-TGLAYIDVANLTE 268
N E T + ++ I L+ + + + RLD RD+FL S + G+ ++D+ +L +
Sbjct: 171 ENVFIGNEPTAKRAISPVLISRLLEADFSKNSRLDFARDLFLLSFYLRGIPFVDLVHLRK 230
Query: 269 DNIVELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKER-KLLPVISNQKMNGY 327
++ ++ RQKT +++ +IL KY + KE LLPVIS G+
Sbjct: 231 TDV----QGNMLVYFRQKTGQQLTVIIENCAKVILRKYASLCKESVYLLPVISAAGEEGH 286
Query: 328 -------------LKEIADLCGIKKHLTFHMARH 348
L +I+ + +K LT ++ARH
Sbjct: 287 KQYRSALRVYNKRLNQISGILKLKTPLTSYVARH 320
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.322 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,236,036,357
Number of Sequences: 5470121
Number of extensions: 49374605
Number of successful extensions: 139374
Number of sequences better than 1.0e-05: 182
Number of HSP's better than 0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 138883
Number of HSP's gapped (non-prelim): 187
length of query: 365
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 231
effective length of database: 1,161,091,510
effective search space: 268212138810
effective search space used: 268212138810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)