BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_1208 hypothetical protein
(185 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_269346.1| hypothetical protein SPy_1208 [Streptococc... 360 2e-98
ref|NP_607276.1| hypothetical protein spyM18_1159 [Streptoc... 360 3e-98
ref|YP_280362.1| hypothetical membrane spanning protein [St... 359 5e-98
ref|ZP_02920428.1| hypothetical protein STRINF_01309 [Strep... 196 5e-49
ref|YP_820641.1| Predicted membrane protein [Streptococcus ... 196 9e-49
ref|YP_001198945.1| Ammonia permease [Streptococcus suis 05... 182 9e-45
gb|AAL13052.1| unknown [Streptococcus gordonii] 181 3e-44
ref|NP_721353.1| hypothetical protein SMU.955 [Streptococcu... 173 5e-42
ref|YP_001450256.1| integral membrane protein [Streptococcu... 171 2e-41
ref|YP_001035347.1| hypothetical protein SSA_1399 [Streptoc... 161 2e-38
ref|ZP_00875729.1| conserved hypothetical protein [Streptoc... 140 4e-32
ref|YP_139730.1| hypothetical protein stu1283 [Streptococcu... 123 6e-27
ref|YP_812163.1| Predicted membrane protein [Lactobacillus ... 96 1e-18
ref|YP_618266.1| hypothetical protein Ldb0043 [Lactobacillu... 94 4e-18
ref|NP_965365.1| hypothetical protein LJ1561 [Lactobacillus... 90 7e-17
ref|YP_001577453.1| hypothetical protein lhv_1105 [Lactobac... 87 4e-16
ref|NP_785950.1| integral membrane protein [Lactobacillus p... 87 5e-16
ref|YP_193889.1| hypothetical protein LBA1008 [Lactobacillu... 86 2e-15
ref|YP_814568.1| Predicted membrane protein [Lactobacillus ... 81 4e-14
ref|YP_805905.1| Predicted membrane protein [Lactobacillus ... 79 1e-13
ref|ZP_01995656.1| hypothetical protein DORLON_01651 [Dorea... 72 2e-11
ref|ZP_02620192.1| membrane spanning protein [Clostridium b... 62 2e-08
ref|YP_877443.1| membrane spanning protein [Clostridium nov... 62 2e-08
ref|YP_001727317.1| Predicted membrane protein [Leuconostoc... 60 9e-08
ref|YP_695822.1| hypothetical protein CPF_1376 [Clostridium... 54 4e-06
ref|ZP_02954370.1| conserved hypothetical protein [Clostrid... 54 4e-06
ref|ZP_01801983.1| hypothetical protein CdifQ_04002947 [Clo... 54 4e-06
ref|YP_698513.1| hypothetical protein CPR_1191 [Clostridium... 54 4e-06
ref|YP_001394156.1| hypothetical protein CKL_0755 [Clostrid... 54 6e-06
ref|ZP_02748390.1| hypothetical protein CdifQCD-6_20316 [Cl... 53 1e-05
ref|YP_001089045.1| hypothetical protein CD2531 [Clostridiu... 52 1e-05
ref|ZP_01966472.1| hypothetical protein RUMTOR_00010 [Rumin... 52 2e-05
ref|ZP_02993227.1| hypothetical protein CLOSPO_00269 [Clost... 52 2e-05
ref|YP_001392672.1| hypothetical protein CLI_3499 [Clostrid... 52 2e-05
ref|YP_001385645.1| hypothetical protein CLB_3384 [Clostrid... 52 2e-05
ref|YP_001255810.1| membrane protein [Clostridium botulinum... 52 2e-05
ref|YP_001788642.1| conserved hypothetical protein [Clostri... 51 4e-05
ref|ZP_02616713.1| conserved hypothetical protein [Clostrid... 50 5e-05
ref|YP_001696264.1| predicted membrane protein [Lysinibacil... 50 6e-05
ref|YP_001512265.1| membrane protein-like protein [Alkaliph... 50 8e-05
ref|ZP_01725249.1| Predicted membrane protein [Bacillus sp.... 49 2e-04
ref|YP_001887356.1| membrane spanning protein [Clostridium ... 49 2e-04
ref|ZP_02950345.1| membrane spanning protein [Clostridium b... 48 2e-04
ref|YP_817622.1| Predicted membrane protein [Leuconostoc me... 47 5e-04
ref|YP_001307900.1| membrane spanning protein [Clostridium ... 47 6e-04
ref|ZP_02236246.1| hypothetical protein DORFOR_03143 [Dorea... 47 7e-04
ref|ZP_02861000.1| hypothetical protein ANASTE_00193 [Anaer... 46 0.001
ref|YP_001308119.1| hypothetical protein Cbei_0979 [Clostri... 45 0.002
ref|NP_347271.1| Predicted membrane protein [Clostridium ac... 45 0.003
ref|ZP_01994420.1| hypothetical protein DORLON_00405 [Dorea... 45 0.003
ref|ZP_02418618.1| hypothetical protein ANACAC_01201 [Anaer... 44 0.004
ref|YP_001309035.1| membrane -like protein [Clostridium bei... 44 0.005
ref|YP_001567379.1| membrane protein-like protein [Petrotog... 44 0.006
ref|YP_001039542.1| hypothetical protein Cthe_3154 [Clostri... 44 0.006
ref|ZP_02438067.1| hypothetical protein CLOSS21_00505 [Clos... 44 0.007
ref|YP_001815464.1| membrane spanning protein [Exiguobacter... 40 0.050
ref|ZP_02035013.1| hypothetical protein BACCAP_00605 [Bacte... 40 0.11
ref|ZP_02948439.1| conserved hypothetical protein [Clostrid... 39 0.15
ref|NP_782545.1| membrane spanning protein [Clostridium tet... 39 0.21
ref|ZP_02080551.1| hypothetical protein CLOLEP_02005 [Clost... 38 0.36
ref|YP_001181083.1| hypothetical protein Csac_2314 [Caldice... 38 0.36
ref|ZP_02423455.1| hypothetical protein EUBSIR_02314 [Eubac... 37 0.49
ref|ZP_02211862.1| hypothetical protein CLOBAR_01478 [Clost... 37 0.57
ref|NP_687138.1| hypothetical protein SAG0102 [Streptococcu... 37 0.62
ref|NP_734571.1| hypothetical protein gbs0101 [Streptococcu... 37 0.65
ref|ZP_02089932.1| hypothetical protein FAEPRAM212_00161 [F... 36 0.95
ref|YP_001558003.1| hypothetical protein Cphy_0878 [Clostri... 36 1.1
ref|YP_001691342.1| conserved hypothetical protein [Finegol... 36 1.1
ref|YP_001321472.1| hypothetical protein Amet_3693 [Alkalip... 36 1.2
ref|YP_328826.1| hypothetical protein SAK_0152 [Streptococc... 36 1.2
ref|ZP_02185670.1| hypothetical protein CAT7_05353 [Carnoba... 36 1.4
ref|ZP_02432393.1| hypothetical protein CLOSCI_02639 [Clost... 35 2.3
ref|NP_815644.1| hypothetical protein EF1968 [Enterococcus ... 35 3.5
ref|YP_001559188.1| small GTP-binding protein [Clostridium ... 34 4.7
ref|YP_487823.1| Acriflavin resistance protein [Rhodopseudo... 33 6.1
ref|YP_184515.1| hypothetical protein TK2102 [Thermococcus ... 33 7.1
ref|YP_582737.1| protein of unknown function UPF0118 [Ralst... 33 7.7
ref|NP_359042.1| hypothetical protein spr1449 [Streptococcu... 33 7.7
ref|YP_001691365.1| conserved hypothetical protein [Finegol... 33 9.6
ref|ZP_02093461.1| hypothetical protein PEPMIC_00212 [Pepto... 33 9.6
ref|NP_622589.1| hypothetical protein TTE0937 [Thermoanaero... 33 9.6
>ref|NP_269346.1| hypothetical protein SPy_1208 [Streptococcus pyogenes M1 GAS]
ref|NP_664652.1| hypothetical protein SpyM3_0848 [Streptococcus pyogenes MGAS315]
ref|NP_802310.1| hypothetical protein SPs1048 [Streptococcus pyogenes SSI-1]
ref|YP_060229.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10394]
ref|YP_282285.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS5005]
ref|YP_596755.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS9429]
ref|YP_600577.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS2096]
ref|YP_602565.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10750]
gb|AAK34067.1| hypothetical protein SPy_1208 [Streptococcus pyogenes M1 GAS]
gb|AAM79455.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
dbj|BAC64143.1| hypothetical protein [Streptococcus pyogenes SSI-1]
gb|AAT87046.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10394]
gb|AAZ51540.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS5005]
gb|ABF32211.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS9429]
gb|ABF36033.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS2096]
gb|ABF38021.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10750]
Length = 185
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL
Sbjct: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI
Sbjct: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
Query: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ 180
NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ
Sbjct: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ 180
Query: 181 AKRGF 185
AKRGF
Sbjct: 181 AKRGF 185
>ref|NP_607276.1| hypothetical protein spyM18_1159 [Streptococcus pyogenes MGAS8232]
ref|YP_001128435.1| hypothetical protein SpyM50876 [Streptococcus pyogenes str.
Manfredo]
gb|AAL97775.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
emb|CAM30204.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
Length = 185
Score = 360 bits (924), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/185 (99%), Positives = 185/185 (100%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
MSSQKLANYIELSMYAALIFISVQVLR+PVGMQFIHLGNALVVIAVLIYGSKKGALVASL
Sbjct: 1 MSSQKLANYIELSMYAALIFISVQVLRIPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI
Sbjct: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
Query: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ 180
NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ
Sbjct: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ 180
Query: 181 AKRGF 185
AKRGF
Sbjct: 181 AKRGF 185
>ref|YP_280362.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS6180]
ref|YP_598645.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10270]
gb|AAX72007.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS6180]
gb|ABF34101.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10270]
Length = 185
Score = 359 bits (921), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 183/185 (98%), Positives = 185/185 (100%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
MSSQKLANYIELSMYAALIFISVQVLR+P+GMQFIHLGNALVVIAVLIYGSKKGALVASL
Sbjct: 1 MSSQKLANYIELSMYAALIFISVQVLRIPIGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI
Sbjct: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
Query: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ 180
NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ
Sbjct: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTIGQ 180
Query: 181 AKRGF 185
AKRGF
Sbjct: 181 AKRGF 185
>ref|ZP_02920428.1| hypothetical protein STRINF_01309 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gb|EDT47512.1| hypothetical protein STRINF_01309 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 185
Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 132/172 (76%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + +ELS Y+ALIFISVQ LR+P+G QF+H GNALVVIAVL++GS+ ALVAS+
Sbjct: 1 MKNLTTRQLVELSFYSALIFISVQFLRIPLGAQFVHFGNALVVIAVLLFGSRIAALVASI 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
GLG+FDVLNGYA+ VW TILESL +CL+LH V+E+ + S K + +I + ++AA++K+
Sbjct: 61 GLGLFDVLNGYAAEVWTTILESLIVCLVLHFVFEKLLHSDTKTRNVIIVGIVAAITKIIS 120
Query: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNL 172
NL+KY L+ + L L V+F+ AL KIGG+FG++ VT+++VP+LYP++K
Sbjct: 121 NLVKYTLINSLVGGLHLQVAFFTALVKIGGTFGSALVTIISVPILYPILKQF 172
>ref|YP_820641.1| Predicted membrane protein [Streptococcus thermophilus LMD-9]
gb|ABJ66445.1| Predicted membrane protein [Streptococcus thermophilus LMD-9]
Length = 176
Score = 196 bits (497), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 134/175 (76%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + +ELS+YAALI ++VQ +R+P G QF+HLGNALVVIA+LI+G++KGALVA++
Sbjct: 1 MKNDNTRELVELSLYAALIIVTVQFIRIPFGPQFVHLGNALVVIAILIFGARKGALVATV 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
LG+FD+ NGYA+ VWITILESL +CL+L+LV+E+ ++S+ K +I VIAAL+K+ +
Sbjct: 61 ALGLFDIFNGYAAEVWITILESLIVCLVLYLVFEKLLKSNDKIVNVIIAGVIAALTKIIL 120
Query: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEK 175
N +KY ++ I LPL + ++ KIGG+FGTS VT++AVPLLYPV K + +K
Sbjct: 121 NFLKYTIINTIVASLPLKAAMLASVIKIGGTFGTSVVTIIAVPLLYPVFKRIFKK 175
>ref|YP_001198945.1| Ammonia permease [Streptococcus suis 05ZYH33]
ref|YP_001201147.1| Ammonia permease [Streptococcus suis 98HAH33]
gb|ABP90545.1| Ammonia permease [Streptococcus suis 05ZYH33]
gb|ABP92747.1| Ammonia permease [Streptococcus suis 98HAH33]
Length = 176
Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 128/175 (73%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M +L E+S++AALI + V +R+P G QF+HLGNALVV+ VLI+G+KKGAL ASL
Sbjct: 1 MKQNQLRQLTEISLFAALICVVVFFIRIPFGSQFVHLGNALVVVGVLIFGAKKGALAASL 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
GLGIFD+L+GYASV WITILESL +C +LHL YE+ +Q++ I+ + ++AAL+K+ +
Sbjct: 61 GLGIFDLLSGYASVAWITILESLIVCFVLHLFYEKFLQANDSLSNIMLVGIVAALTKIIL 120
Query: 121 NLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEK 175
NL+KY L + L SV F ALG+I G++GT+ T++AVP+LY V K L ++
Sbjct: 121 NLLKYTLTGSLVGGLTPSVLFLAALGRILGTYGTAITTIIAVPILYQVCKRLYKR 175
>gb|AAL13052.1| unknown [Streptococcus gordonii]
Length = 176
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 131/178 (73%), Gaps = 6/178 (3%)
Query: 1 MSSQKLANY--IELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVA 58
M++ KL +ELS+++ALI +S+Q R+PVG QFIH GNALVV+A LIYG++KGALVA
Sbjct: 1 MTNNKLTTREIVELSLFSALIALSIQFFRIPVGPQFIHFGNALVVVAALIYGARKGALVA 60
Query: 59 SLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKL 118
++GLG+FD+LNGYASVVWITILE+L + L++H VYE AM ++ I+ AAL+K+
Sbjct: 61 TVGLGVFDILNGYASVVWITILEALVVILVVHFVYE-AMPKCRERLVIVGFA--AALTKI 117
Query: 119 TINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
+NL KY L+ +G L L S +AL KI G+FG+S T++AVP+LYP+ K + E +
Sbjct: 118 VLNLFKYTLIGMLG-NLTLGASLNLALAKIVGTFGSSLATVIAVPILYPIFKKISETI 174
>ref|NP_721353.1| hypothetical protein SMU.955 [Streptococcus mutans UA159]
gb|AAN58659.1|AE014935_11 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 177
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 135/175 (77%), Gaps = 6/175 (3%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M ++L IE+S++AALI +SVQ LR+ VG QF+HLGNALVVIAVL++GS GAL A+L
Sbjct: 1 MKKEELRRLIEVSLFAALILVSVQFLRIQVGPQFVHLGNALVVIAVLVFGSGFGALAAAL 60
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTI 120
GLG+FD+ NGYA+ VWITILESL +C +LHLVYE+AM+++ KP I T+ ++AA++K+ +
Sbjct: 61 GLGLFDIFNGYAAEVWITILESLLVCYVLHLVYEKAMKANDKPATIFTVGLVAAVTKIIL 120
Query: 121 NLIKYLLL-AYIG--TQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNL 172
NL KY L+ ++IG LP V AL KI G+FGTS VT+VAVP+LYP+ K +
Sbjct: 121 NLFKYTLINSFIGGLALLPAMVG---ALAKITGTFGTSIVTIVAVPILYPIFKRI 172
>ref|YP_001450256.1| integral membrane protein [Streptococcus gordonii str. Challis
substr. CH1]
gb|ABV10500.1| integral membrane protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 176
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 128/178 (71%), Gaps = 6/178 (3%)
Query: 1 MSSQKLANY--IELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVA 58
M++ KL+ +ELS++AALI +SVQ R+ VG QFIH GNALVV+A L+YG++KG LVA
Sbjct: 1 MNNNKLSTRELVELSLFAALIELSVQFFRIHVGPQFIHFGNALVVVAALLYGTRKGVLVA 60
Query: 59 SLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKL 118
++GLGIFD+LNGYA VVWITILE+L + L++H VYE AM + I+ AAL+K+
Sbjct: 61 TVGLGIFDLLNGYAQVVWITILEALVVILVVHFVYE-AMPKCRGKLVIVGFA--AALTKI 117
Query: 119 TINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
+NL KY L+ +G L L S +AL KI G+FG+S T++AVP+LYP+ K + E +
Sbjct: 118 VLNLFKYTLIGMLG-NLTLGASLNLALVKIVGTFGSSLATVIAVPILYPIFKKISETI 174
>ref|YP_001035347.1| hypothetical protein SSA_1399 [Streptococcus sanguinis SK36]
gb|ABN44797.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 188
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 120/165 (72%), Gaps = 4/165 (2%)
Query: 12 LSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGY 71
+S++AALIF+S+Q ++PVG QFIH GNALVV+ LI+GSK G L A++GLGIFD+LNGY
Sbjct: 14 ISLFAALIFLSIQFFKIPVGAQFIHFGNALVVVGCLIFGSKLGFLAAAIGLGIFDLLNGY 73
Query: 72 ASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTINLIKYLLLAYI 131
A+ + + +LE+LA+ +++H +YER Q + + I+ V AAL K+ +N+ KY L +
Sbjct: 74 AAEIPVILLEALAVAVVIHFLYERLFQRKDRLRNILVTAVAAALVKIVLNIFKYTLTGTL 133
Query: 132 --GTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKE 174
G+ LP +F +A+ +I G+FG+S T++AVP+LYP+ K +++
Sbjct: 134 LGGSSLP--AAFLLAVAEITGTFGSSLATVIAVPILYPIFKQVRK 176
>ref|ZP_00875729.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gb|EAP40096.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 137
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 99/135 (73%)
Query: 41 LVVIAVLIYGSKKGALVASLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSS 100
L I VLI+G+KKGAL ASLGLGIFD+L+GYASV WITILESL +C +LHL YE+ +Q++
Sbjct: 2 LCGIGVLIFGAKKGALAASLGLGIFDLLSGYASVAWITILESLIVCFVLHLFYEKFLQAN 61
Query: 101 KKPKAIITITVIAALSKLTINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLV 160
II + ++AAL+K+ +NL+KY L + L S SF ALG+I G++GT+ T++
Sbjct: 62 DSLSNIILVGIVAALTKIILNLLKYTLTGSLVGGLTPSASFLAALGRILGTYGTAITTII 121
Query: 161 AVPLLYPVIKNLKEK 175
AVP+LY V K L ++
Sbjct: 122 AVPILYQVCKRLYKR 136
>ref|YP_139730.1| hypothetical protein stu1283 [Streptococcus thermophilus LMG 18311]
ref|YP_141642.1| hypothetical protein str1283 [Streptococcus thermophilus CNRZ1066]
gb|AAV60915.1| hypothetical protein stu1283 [Streptococcus thermophilus LMG 18311]
gb|AAV62827.1| hypothetical protein str1283 [Streptococcus thermophilus CNRZ1066]
Length = 163
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 17/158 (10%)
Query: 37 LGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYASVVWITILESLAICLILHLVYERA 96
+GNALVVIA+LI+ +KGALVA++ LG+FD+ NGYA+ VWITILESL +CL+L+LV+E+
Sbjct: 1 MGNALVVIAILIFDDRKGALVATVALGLFDIFNGYAAEVWITILESLIVCLVLYLVFEKL 60
Query: 97 MQSSKKPKAIITITVIAALSKLTINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSF---- 152
++S+ K +I VIAAL+K+ +N +KY ++ I LPL + ++ KIGG+F
Sbjct: 61 LKSNDKIVNVIIAGVIAALTKIILNFLKYTIINTIVASLPLKAAMLASVIKIGGTFWNIS 120
Query: 153 -----GTSFVTLVAVPLLYPVIKNLKEKVTIGQAKRGF 185
G+SF++ + + ++++ I QA F
Sbjct: 121 CYNHCGSSFISCLQT--------HFEKRLKIEQAGPAF 150
>ref|YP_812163.1| Predicted membrane protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gb|ABJ57725.1| Predicted membrane protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 185
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 14 MYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLN 69
++AA+I+I + VLR+P VG FIH GN L +A+L G + GAL +GLG FD+LN
Sbjct: 16 LFAAMIYIGIWVLRIPLPAVVGRPFIHFGNTLTAVAILYLGFRNGALAGIIGLGGFDILN 75
Query: 70 GYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTIN---LIKYL 126
GYA+ W+T+LE + + IL VY + M+ + K II + VIA ++K+ + ++
Sbjct: 76 GYAATSWLTMLEVVVVAAILSAVY-KGMKYNDSKKNIIILAVIAGVTKIFTSYATMVVAA 134
Query: 127 LLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
L+A Q L +F L + S T+ T P+LY +K++ +V
Sbjct: 135 LMAGTALQPALVAAFLSLLATVINSCSTAVCT----PILYFALKDITVRV 180
>ref|YP_618266.1| hypothetical protein Ldb0043 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
emb|CAI96887.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 185
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 12/170 (7%)
Query: 14 MYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLN 69
++AA+I+I + VLR+P VG FIH GN L +A+L G + G L +GLG FD+LN
Sbjct: 16 LFAAMIYIGIWVLRIPLPAVVGRPFIHFGNTLTAVAILYLGFRNGTLAGIIGLGGFDILN 75
Query: 70 GYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKLTIN---LIKYL 126
GYA+ W+T+LE + + IL VY + M+ + K II + VIA ++K+ + ++
Sbjct: 76 GYAATSWLTMLEVVVVAAILSAVY-KGMKYNDSKKNIIILAVIAGVTKIFTSYATMVVAA 134
Query: 127 LLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
L+A Q L +F L + S T+ T P+LY +K++ +V
Sbjct: 135 LMAGTALQPALVAAFLSLLATVINSCSTAVCT----PILYFALKDITVRV 180
>ref|NP_965365.1| hypothetical protein LJ1561 [Lactobacillus johnsonii NCC 533]
gb|AAS09331.1| hypothetical protein LJ_1561 [Lactobacillus johnsonii NCC 533]
Length = 185
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 16/183 (8%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPV----GMQFIHLGNALVVIAVLIYGSKKGALVA 58
L + I ++AA+I++ V VLR+PV G FIH GN L +A+L G + G L
Sbjct: 5 ENSLVSIIMTGLFAAIIYLGVWVLRIPVPALVGRPFIHFGNTLTAVAILYLGYRNGMLAG 64
Query: 59 SLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKL 118
+GLG FD+LNGYA+ W+T+LE + + +L VY + M K II + +IA +K+
Sbjct: 65 IIGLGGFDLLNGYAATSWLTMLEVVVVASVLTAVY-KGMHYQDSKKNIIILGIIAGFTKI 123
Query: 119 ----TINLIKYLLLAYIGTQLPLS-VSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLK 173
+++++ L+ +GT L ++ VS +V+L + S T + P+LY +++
Sbjct: 124 FTTYCVSIVEALM---VGTSLNVALVSSFVSL---PATIINSISTAICTPILYFAVRDGA 177
Query: 174 EKV 176
++
Sbjct: 178 RRI 180
>ref|YP_001577453.1| hypothetical protein lhv_1105 [Lactobacillus helveticus DPC 4571]
gb|ABX27162.1| hypothetical protein lhv_1105 [Lactobacillus helveticus DPC 4571]
Length = 185
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 9/186 (4%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVPV----GMQFIHLGNALVVIAVLIYGSKKGALV 57
L I ++AA+I+I + VLR+PV G FIH GN L +A+L G + G +
Sbjct: 4 DKNSLQALIFTGLFAAIIYIGIWVLRIPVPAMVGRPFIHFGNTLTAVAILYLGYRNGMIA 63
Query: 58 ASLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSK 117
+GLG FD+LNGYA+ W+T+LE + + +L L++ + M K II + ++A ++K
Sbjct: 64 GIIGLGGFDLLNGYAATSWLTMLEVVVVATVLSLIF-KGMNYQDSKKNIIILGIVAGVTK 122
Query: 118 L-TINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
+ T + + +GT L V++ A + + S T + P+LY +K+ +V
Sbjct: 123 IFTTYCVSIVGALMVGTS--LQVAYVGAFVSLPATVINSISTAICTPILYFALKD-ATRV 179
Query: 177 TIGQAK 182
+ +AK
Sbjct: 180 IMKKAK 185
>ref|NP_785950.1| integral membrane protein [Lactobacillus plantarum WCFS1]
emb|CAD64801.1| integral membrane protein [Lactobacillus plantarum WCFS1]
Length = 186
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 21/179 (11%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGALVA 58
S++L + ++AA+IFI + VLR+P VG FIH GN L V+AV++ G GA
Sbjct: 4 SEQLKKLVLAGLFAAIIFIGISVLRIPLPAIVGRPFIHFGNILTVLAVMLLGFGYGATAG 63
Query: 59 SLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKL 118
++GLG+FD+LNGYA+ W+TI+E++ + +++L ++ + + ++++A L+K+
Sbjct: 64 AVGLGLFDILNGYAATSWLTIIEAIILAAMVNLSFKSIGYREDRIGRLYWVSLVAGLTKI 123
Query: 119 TINLIKYLLLA-YIGTQLPLSVSFWVALGKIGGSFGT-------SFVTLVAVPLLYPVI 169
+ ++ A +GT L +++ GSF + + ++ VPLLY ++
Sbjct: 124 VTSWCTGVIEALMVGTTLKVAMI---------GSFTSLLAATINAVACVIIVPLLYRIL 173
>ref|YP_193889.1| hypothetical protein LBA1008 [Lactobacillus acidophilus NCFM]
gb|AAV42858.1| hypothetical protein LBA1008 [Lactobacillus acidophilus NCFM]
Length = 185
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 14/166 (8%)
Query: 14 MYAALIFISVQVLRVPV----GMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLN 69
++AA+I+I + V+R+PV G FIH GN L +A+L G + G + +GLG FD+LN
Sbjct: 16 LFAAIIYIGIWVIRIPVPAMVGRPFIHFGNTLTAVAILYLGYRNGMIAGIIGLGGFDLLN 75
Query: 70 GYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKL----TINLIKY 125
GYA+ W+T+LE + + +L V+ + M K II + +IA ++K+ +++++
Sbjct: 76 GYAATSWLTMLEVVVVASVLTAVF-KGMNYRDSKKNIIILGIIAGVTKIFTTYCVSIVEA 134
Query: 126 LLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKN 171
L+ +GT L V++ A + + S T + P+LY +K+
Sbjct: 135 LM---VGTS--LQVAYIGAFVSLPATVINSISTAICTPILYFAVKD 175
>ref|YP_814568.1| Predicted membrane protein [Lactobacillus gasseri ATCC 33323]
gb|ABJ60130.1| Predicted membrane protein [Lactobacillus gasseri ATCC 33323]
Length = 185
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPV----GMQFIHLGNALVVIAVLIYGSKKGALVA 58
L + I ++AA+I++ V VLR+PV G FIH GN L +A+L G + G L
Sbjct: 5 ENSLVSIIMTGLFAAIIYLGVWVLRIPVPALVGRPFIHFGNTLTAVAILYLGYRNGMLAG 64
Query: 59 SLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSKL 118
+GLG FD+LNGYA+ W+T+LE + + +L VY+ K II +
Sbjct: 65 IIGLGGFDLLNGYAATSWLTMLEVVIVASVLTAVYKGMHYQDSKRNIIILGIIAGITKIF 124
Query: 119 TINLIKYLLLAYIGTQLPLS-VSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
T + + +GT L ++ VS +V+L + S T + P+LY +++ ++V
Sbjct: 125 TTYCVSIVEALMVGTSLNVALVSSFVSL---PATVINSISTAICTPILYFAVRDGAKRV 180
>ref|YP_805905.1| Predicted membrane protein [Lactobacillus casei ATCC 334]
gb|ABJ69463.1| Predicted membrane protein [Lactobacillus casei ATCC 334]
Length = 182
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGALV 57
S L N I ++AA+IFI + +LR+P VG FIH GN L+V+A+L G + G L
Sbjct: 4 SHNTLKNIIFTGLFAAIIFIGISLLRIPIPAMVGRPFIHFGNPLMVLAILFLGGRLGGLA 63
Query: 58 ASLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAALSK 117
A +GLG FD+LNGYA+ W+T LE++ + +++ + +A + + +P+ II I ++A L+K
Sbjct: 64 AVIGLGGFDLLNGYAATSWLTALEAIVMAIVVSALV-KAFKHNDQPRNIIIIGILAGLTK 122
Query: 118 LTINLIKYLLLA-YIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKV 176
+ + + ++ A +G+ +V A + + S T + VP+LY +++ L +
Sbjct: 123 IVTSYLTGVVEALMVGSVFKAAVV--GAFLSLPATVINSIATAIIVPVLYFILRPLFRRF 180
Query: 177 T 177
T
Sbjct: 181 T 181
>ref|ZP_01995656.1| hypothetical protein DORLON_01651 [Dorea longicatena DSM 13814]
gb|EDM63063.1| hypothetical protein DORLON_01651 [Dorea longicatena DSM 13814]
Length = 195
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGAL 56
M+ K+ N + + + A+ F+ +Q R+P VG F+H G+ VV+ +L+ G K+GA+
Sbjct: 11 MNDNKVKNLVITAFFTAITFLGIQSFRIPLPAAVGTPFLHFGHIFVVMGLLLQGGKRGAV 70
Query: 57 VASLGLGIFDVLNGYASVVWITILESLAICLIL 89
+LGL IFD+LNGY T +E+ CLI+
Sbjct: 71 SGTLGLTIFDMLNGYMQDAPKTFVETAVKCLIV 103
>ref|ZP_02620192.1| membrane spanning protein [Clostridium botulinum C str. Eklund]
gb|EDS78314.1| membrane spanning protein [Clostridium botulinum C str. Eklund]
Length = 188
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLG 61
S K+ + I++ + AA++F++ ++ +P M +HLG+++V +A ++ G KKGA+ +++G
Sbjct: 13 SGLKVIDLIQVGIMAAIVFVATSIVHIPSFMGVVHLGDSMVFLAAVLLGRKKGAIASAIG 72
Query: 62 LGIFDVLNGYASVVW 76
+ +FD+LNGY ++W
Sbjct: 73 MSLFDLLNGY--ILW 85
>ref|YP_877443.1| membrane spanning protein [Clostridium novyi NT]
gb|ABK60503.1| membrane spanning protein [Clostridium novyi NT]
Length = 188
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLG 61
S K+ + I++ + AA++F++ ++ +P M +HLG+++V +A ++ G KKGA+ +++G
Sbjct: 13 SGLKVIDLIQVGIMAAIVFVATSIVHIPSIMGVVHLGDSMVFLAAILLGRKKGAMASAIG 72
Query: 62 LGIFDVLNGYASVVW 76
+ +FD+L+GY V+W
Sbjct: 73 MSLFDILHGY--VLW 85
>ref|YP_001727317.1| Predicted membrane protein [Leuconostoc citreum KM20]
gb|ACA81873.1| Predicted membrane protein [Leuconostoc citreum KM20]
Length = 185
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 24/183 (13%)
Query: 1 MSSQKLANYIEL-SMYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGA 55
M+ +K I + +AA+ F++ + +VP +G F+HLGNA +++VLI G K+GA
Sbjct: 1 MTKEKTTQTIVFVAFFAAITFVATSI-QVPMPALIGKPFVHLGNAAALLSVLILGYKRGA 59
Query: 56 LVASLGLGIFDVLNGYA-----SVVWITILESLAICLILHLVYERAMQSSKKP----KAI 106
L +GL +FDV + Y + I I+ A+ + L Y + Q+SK AI
Sbjct: 60 LAGGMGLALFDVTHNYILDAPYYFIEIFIVGGSAMLVFYSLHYNKKPQTSKLALIVVAAI 119
Query: 107 ITITVIAALSKLTINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLY 166
IT V+ L ++L+K + + +F L + + TL+ V ++Y
Sbjct: 120 ITKLVMTTLHNFVMSLVK---------GMTIQPAFVATLSTLFPTLVNCVTTLLVVMIVY 170
Query: 167 PVI 169
P++
Sbjct: 171 PIL 173
>ref|YP_695822.1| hypothetical protein CPF_1376 [Clostridium perfringens ATCC
13124]
gb|ABG84648.1| conserved hypothetical protein [Clostridium perfringens ATCC
13124]
Length = 178
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLG 61
++ K + ++ A+IFIS ++R+P F+HLG+ +V++A + G K+GAL + +G
Sbjct: 5 TNSKFHKTVFTALMIAIIFISANLIRIPTVGGFVHLGDCMVLLAAALLGKKRGALASGIG 64
Query: 62 LGIFDVLNGYASVVW 76
+ + D+ +GY ++W
Sbjct: 65 MALVDLYSGY--IIW 77
>ref|ZP_02954370.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
gb|EDT70599.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
Length = 178
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLG 61
++ K + ++ A+IFIS ++R+P F+HLG+ +V++A + G K+GAL + +G
Sbjct: 5 TNSKFHKTVFTALMIAIIFISANLIRIPTVGGFVHLGDCMVLLAAALLGKKRGALASGIG 64
Query: 62 LGIFDVLNGYASVVW 76
+ + D+ +GY ++W
Sbjct: 65 MALVDLYSGY--IIW 77
>ref|ZP_01801983.1| hypothetical protein CdifQ_04002947 [Clostridium difficile
QCD-32g58]
ref|ZP_02726430.1| hypothetical protein CdifQCD_01775 [Clostridium difficile
QCD-37x79]
ref|ZP_02757520.1| hypothetical protein CdifQCD-7_12681 [Clostridium difficile
QCD-76w55]
ref|ZP_02764877.1| hypothetical protein CdifQCD-_14923 [Clostridium difficile
QCD-97b34]
Length = 174
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 52/77 (67%), Gaps = 6/77 (7%)
Query: 2 SSQKLA--NYIELSMYAALIFISVQVL--RVPVGMQ--FIHLGNALVVIAVLIYGSKKGA 55
+ QK + +E S+ AL+FI+ + + R+P+ + +HLG A++ I+ +++GSKKGA
Sbjct: 5 AKQKFTTKDMVETSLLIALVFIATKFINIRLPISINGGLVHLGTAMLFISAIVFGSKKGA 64
Query: 56 LVASLGLGIFDVLNGYA 72
L ++G+ +FD+++G+
Sbjct: 65 LSGAIGMSLFDLISGWT 81
>ref|YP_698513.1| hypothetical protein CPR_1191 [Clostridium perfringens SM101]
gb|ABG87449.1| conserved hypothetical protein [Clostridium perfringens SM101]
Length = 178
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 2 SSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLG 61
++ K + ++ A+IFIS ++R+P F+HLG+ +V++A + G K+GAL + +G
Sbjct: 5 TNSKFHKTVFTALMIAIIFISANLIRIPTVGGFVHLGDCMVLLAAALLGKKRGALASGIG 64
Query: 62 LGIFDVLNGYASVVW 76
+ + D+ +GY ++W
Sbjct: 65 MALVDLYSGY--IIW 77
>ref|YP_001394156.1| hypothetical protein CKL_0755 [Clostridium kluyveri DSM 555]
gb|EDK32808.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 185
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 96/183 (52%), Gaps = 13/183 (7%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPV-GMQF---IHLGNALVVIAVLIYGSKKGAL 56
+++ K+ + +++S+ AA+I+IS ++ +P G+ F +HLG+++V++ ++ G +KG
Sbjct: 9 LNTLKVRDMVQVSLMAAIIYISTAIINIPTPGVIFKGVVHLGDSMVLLGAILLGKRKGFF 68
Query: 57 VASLGLGIFDVLNGYASVVWIT---ILESLAICLILHLVYERAMQSSKKPKAIITITVIA 113
A++G+ +FD+L+ YA VW ++ + + + Y + K + +
Sbjct: 69 SAAVGMCLFDILSPYA--VWAPFTFFIKGIMAWIAAAIAYRKGNNGEKFANNVFAFIIAC 126
Query: 114 ALSKLTINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLK 173
L ++ L++ ++ L L +F V+ +I G+ S + +V + P+ + LK
Sbjct: 127 IWMILAYYVVGALMMHFV-ANLGLVKAFAVSAAEIPGNIAQSLMGMV---IALPLSRILK 182
Query: 174 EKV 176
K+
Sbjct: 183 RKI 185
>ref|ZP_02748390.1| hypothetical protein CdifQCD-6_20316 [Clostridium difficile
QCD-63q42]
Length = 174
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 6/77 (7%)
Query: 2 SSQKLA--NYIELSMYAALIFISVQVL--RVPVGMQ--FIHLGNALVVIAVLIYGSKKGA 55
+ QK + +E S+ AL+FI+ + + R+P+ + +HLG A++ I+ +I+G KKGA
Sbjct: 5 AKQKFTTKDMVETSLLIALVFIATKFINIRLPISINGGLVHLGTAMLFISAIIFGGKKGA 64
Query: 56 LVASLGLGIFDVLNGYA 72
L ++G+ +FD+++G+
Sbjct: 65 LSGAIGMSLFDLISGWT 81
>ref|YP_001089045.1| hypothetical protein CD2531 [Clostridium difficile 630]
emb|CAJ69418.1| putative membrane protein [Clostridium difficile 630]
Length = 174
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 8 NYIELSMYAALIFISVQVL--RVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLG 63
+ +E S+ AL+FI+ + + R+P+ + +HLG A++ I+ +++G KKGAL ++G+
Sbjct: 13 DMVETSLLIALVFIATKFINIRLPISINGGLVHLGTAMLFISAIVFGGKKGALSGAIGMS 72
Query: 64 IFDVLNGYA 72
+FD+++G+
Sbjct: 73 LFDLISGWT 81
>ref|ZP_01966472.1| hypothetical protein RUMTOR_00010 [Ruminococcus torques ATCC 27756]
gb|EDK25118.1| hypothetical protein RUMTOR_00010 [Ruminococcus torques ATCC 27756]
Length = 206
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 11 ELSMYAALIFISVQVLR----VPVG-MQFIHLGNALVVIAVLIYGSKKGALVASLGLGIF 65
+ ++ AAL F+S Q L+ +P G H+GNA V+A LI G G L ++G+G
Sbjct: 13 QTALMAALCFVSFQFLQFKIVLPGGDATSFHVGNAFCVLAALILGGWYGGLAGAIGMGFA 72
Query: 66 DVLNG-YASVVWITILESLAICLILHLVYER--AMQSSKKPKAIITITVIAALSKLTINL 122
D+L+ Y + T + L I LI+ LV R + S K I ++IA+++ L N+
Sbjct: 73 DILDPVYITGAPKTFVLKLCIGLIVGLVAHRIAKINESTDKKYIFRWSMIASVAGLGFNV 132
Query: 123 IKYLLLAYIGTQL----PLSVSFWVALGKIGGSFGTSFVTLVAVPLLYPVIKNLKEKVTI 178
I ++ Y Q P ++ +A +F + ++++ +LY ++ + K I
Sbjct: 133 IADPIVGYFYKQYIMGQPQQMAEVLAKWSAATTFVNAVISVILAGVLYNALRPVLLKTGI 192
Query: 179 GQAKR 183
+ KR
Sbjct: 193 IRQKR 197
>ref|ZP_02993227.1| hypothetical protein CLOSPO_00269 [Clostridium sporogenes ATCC
15579]
gb|EDU39215.1| hypothetical protein CLOSPO_00269 [Clostridium sporogenes ATCC
15579]
Length = 187
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + + + +++++ AA+I + ++VP + HLG+++V+++V++ G KKG L +++
Sbjct: 7 MYNTNILDIVQVAIMAAIICVVTFTIKVPTYAGYTHLGDSMVLLSVVLLGRKKGVLSSAI 66
Query: 61 GLGIFDVLNGYASVVW 76
G+G+ D+++GY ++W
Sbjct: 67 GMGMADIISGY--LIW 80
>ref|YP_001392672.1| hypothetical protein CLI_3499 [Clostridium botulinum F str.
Langeland]
ref|ZP_02613688.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
ref|YP_001782950.1| conserved hypothetical protein [Clostridium botulinum B1 str.
Okra]
gb|ABS42186.1| conserved hypothetical protein [Clostridium botulinum F str.
Langeland]
gb|ACA45712.1| conserved hypothetical protein [Clostridium botulinum B1 str.
Okra]
gb|EDT82056.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
Length = 187
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + + + +++++ AA+I + ++VP + HLG+++V+++V++ G KKG L +++
Sbjct: 7 MYNTNILDIVQVAIMAAIICVVTFTIKVPTYAGYTHLGDSMVLLSVVLLGRKKGVLSSAI 66
Query: 61 GLGIFDVLNGYASVVW 76
G+G+ D+++GY ++W
Sbjct: 67 GMGMADIISGY--LIW 80
>ref|YP_001385645.1| hypothetical protein CLB_3384 [Clostridium botulinum A str. ATCC
19397]
ref|YP_001389051.1| hypothetical protein CLC_3271 [Clostridium botulinum A str. Hall]
gb|ABS34984.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
19397]
gb|ABS36182.1| conserved hypothetical protein [Clostridium botulinum A str.
Hall]
Length = 187
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + + + +++++ AA+I + ++VP + HLG+++V+++V++ G KKG L +++
Sbjct: 7 MYNTNILDIVQVAIMAAIICVVTFTIKVPTYAGYTHLGDSIVLLSVVLLGRKKGVLSSAI 66
Query: 61 GLGIFDVLNGYASVVW 76
G+G+ D+++GY ++W
Sbjct: 67 GMGMADIISGY--LIW 80
>ref|YP_001255810.1| membrane protein [Clostridium botulinum A str. ATCC 3502]
emb|CAL84884.1| putative membrane protein [Clostridium botulinum A str. ATCC
3502]
Length = 181
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + + + +++++ AA+I + ++VP + HLG+++V+++V++ G KKG L +++
Sbjct: 1 MYNTNILDIVQVAIMAAIICVVTFTIKVPTYAGYTHLGDSIVLLSVVLLGRKKGVLSSAI 60
Query: 61 GLGIFDVLNGYASVVW 76
G+G+ D+++GY ++W
Sbjct: 61 GMGMADIISGY--LIW 74
>ref|YP_001788642.1| conserved hypothetical protein [Clostridium botulinum A3 str.
Loch Maree]
gb|ACA57134.1| conserved hypothetical protein [Clostridium botulinum A3 str.
Loch Maree]
Length = 187
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + + + +++++ AA++ + ++VP + HLG+++V+++V++ G KKG L +++
Sbjct: 7 MYNTNILDIVQVAIMAAIMCVVTFTIKVPTYAGYTHLGDSMVLLSVVLLGRKKGVLSSAI 66
Query: 61 GLGIFDVLNGYASVVW 76
G+G+ D+++GY ++W
Sbjct: 67 GMGMADIISGY--LIW 80
>ref|ZP_02616713.1| conserved hypothetical protein [Clostridium botulinum Bf]
gb|EDT86723.1| conserved hypothetical protein [Clostridium botulinum Bf]
Length = 187
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M + + + ++++ AA+I + ++VP + HLG+++V+++V++ G KKG L +++
Sbjct: 7 MYNTNILDIAQVAIMAAIICVVTFTIKVPTYAGYTHLGDSMVLLSVVLLGRKKGVLSSAI 66
Query: 61 GLGIFDVLNGYASVVW 76
G+G+ D+++GY ++W
Sbjct: 67 GMGMADIISGY--LIW 80
>ref|YP_001696264.1| predicted membrane protein [Lysinibacillus sphaericus C3-41]
gb|ACA38134.1| predicted membrane protein [Lysinibacillus sphaericus C3-41]
Length = 183
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 45/64 (70%), Gaps = 5/64 (7%)
Query: 16 AALIFISVQV--LRVPVGMQ-FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYA 72
AAL+F++ L++P G IHLG +++ I+ +++G KKGAL ++G+G+FD++ G+
Sbjct: 26 AALVFVATMFINLKLPFGQGGLIHLGTSMLFISAILFGPKKGALAGAIGMGLFDIVGGW- 84
Query: 73 SVVW 76
++W
Sbjct: 85 -LIW 87
>ref|YP_001512265.1| membrane protein-like protein [Alkaliphilus oremlandii OhILAs]
gb|ABW18269.1| membrane protein-like protein [Alkaliphilus oremlandii OhILAs]
Length = 178
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 4 QKLANYIELSMYAALIFISVQVLRVPV--GMQFIHLGNALVVIAVLIYGSKKGALVASLG 61
K+ + L + AL+ +S +++VPV +IHLG++++ +A L++G KKGA+ A +G
Sbjct: 9 NKIHDLTMLGLLTALVAVSTMIIKVPVISTEGYIHLGDSMIFLAALLFGRKKGAIAAGVG 68
Query: 62 LGIFDVLNGYASVVWI 77
+ D+L GY WI
Sbjct: 69 SALADLLLGYTH--WI 82
>ref|ZP_01725249.1| Predicted membrane protein [Bacillus sp. B14905]
gb|EAZ84250.1| Predicted membrane protein [Bacillus sp. B14905]
Length = 183
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 44/63 (69%), Gaps = 5/63 (7%)
Query: 17 ALIFISVQV--LRVPVGMQ-FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYAS 73
AL+F++ L++P G IHLG +++ I+ +++G KKGAL ++G+G+FD++ G+
Sbjct: 27 ALVFVATMFINLKLPFGQGGLIHLGTSMLFISAILFGPKKGALAGAIGMGLFDIVGGW-- 84
Query: 74 VVW 76
++W
Sbjct: 85 LIW 87
>ref|YP_001887356.1| membrane spanning protein [Clostridium botulinum B str. Eklund
17B]
gb|ACD23196.1| membrane spanning protein [Clostridium botulinum B str. Eklund
17B]
Length = 182
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 2 SSQKLANYIELSMYA---ALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVA 58
S K N EL + AL++++ ++++P FIH+G+ +V ++V++ G KKGA+ +
Sbjct: 3 SENKTLNVKELVLMGLMIALVYLAGSIIKIPSLGGFIHIGDCMVFLSVILLGKKKGAVSS 62
Query: 59 SLGLGIFDVLNGY 71
+LG+ + D L GY
Sbjct: 63 ALGMFLVDALGGY 75
>ref|ZP_02950345.1| membrane spanning protein [Clostridium butyricum 5521]
gb|EDT74616.1| membrane spanning protein [Clostridium butyricum 5521]
Length = 181
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 41/55 (74%)
Query: 17 ALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGY 71
AL++++ V+++P F+HLG+ +V ++V++ G KKG++ +++G+ + DVL GY
Sbjct: 18 ALVWLAGSVIKIPSVGGFVHLGDCMVFLSVVVLGKKKGSVASAMGMMLVDVLGGY 72
>ref|YP_817622.1| Predicted membrane protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gb|ABJ61249.1| Predicted membrane protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 188
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 12 LSMYAALIFISVQVLRVP----VGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDV 67
++++ ++ F++ + +VP +G F+HLGN+ V+++VL+ G K+GAL GL +FDV
Sbjct: 14 VALFTSITFVATSI-QVPMPALIGKPFVHLGNSAVLLSVLLLGYKRGALAGGFGLALFDV 72
Query: 68 LNGYA 72
++GYA
Sbjct: 73 MHGYA 77
>ref|YP_001307900.1| membrane spanning protein [Clostridium beijerinckii NCIMB 8052]
gb|ABR32944.1| membrane spanning protein [Clostridium beijerinckii NCIMB 8052]
Length = 177
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 2 SSQKLANYIELSMYAALIFISVQVL--RVPV--GMQFIHLGNALVVIAVLIYGSKKGALV 57
S K + +E ++ AL+F++ + R+P+ +HLG ++ + +++G +KGA+
Sbjct: 8 SKFKTKDMVETALLTALVFVATAFINIRLPILATGGLVHLGTVMLFVTAIVFGKEKGAIA 67
Query: 58 ASLGLGIFDVLNGYA 72
A++G+ IFD+ +G+A
Sbjct: 68 AAVGMAIFDLSSGWA 82
>ref|ZP_02236246.1| hypothetical protein DORFOR_03143 [Dorea formicigenerans ATCC
27755]
gb|EDR45359.1| hypothetical protein DORFOR_03143 [Dorea formicigenerans ATCC
27755]
Length = 174
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASL 60
+ L + +++AAL ++ +R+P +IH G+A+V+++ ++ G G L A +
Sbjct: 2 NSNLKKIVMTALFAALACVATMSIRIPTPGTGGYIHPGDAIVILSGVVLGPSYGLLAAGI 61
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKK 102
G + D+L GY V IT + I L LVY++ + SK
Sbjct: 62 GSAMSDLLGGYFVYVPITFVIKGLIALFSGLVYQKIAKDSKS 103
>ref|ZP_02861000.1| hypothetical protein ANASTE_00193 [Anaerofustis stercorihominis
DSM 17244]
gb|EDS73338.1| hypothetical protein ANASTE_00193 [Anaerofustis stercorihominis
DSM 17244]
Length = 170
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 1 MSSQKLANYIELSMYAALIFISVQV-LRVPVGMQ---FIHLGNALVVIAVLIYGSKKGAL 56
M+++K N + + AALIFI+ + +R+P+ IHLG +++VIA + + L
Sbjct: 1 MANKKTLNVVLTGVMAALIFIATYINIRLPISFTDGGLIHLGGSVLVIATFLLMPVEAGL 60
Query: 57 VASLGLGIFDVLNGYASVVW 76
++G+G+FD+L+ YA VW
Sbjct: 61 AGAIGMGLFDMLSPYA--VW 78
>ref|YP_001308119.1| hypothetical protein Cbei_0979 [Clostridium beijerinckii NCIMB
8052]
gb|ABR33163.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 182
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MSSQKLANYIELSMYA---ALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALV 57
M K N EL + AL +I+ ++++P F+ +G+ +V ++V++ G KKGA+
Sbjct: 1 MERSKSLNTSELVLMGLMIALTYIAGSIIKIPSVGGFVQIGDCMVFLSVIVLGKKKGAIS 60
Query: 58 ASLGLGIFDVLNGY 71
++LG+ + D L GY
Sbjct: 61 SALGMFLVDALGGY 74
>ref|NP_347271.1| Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
gb|AAK78611.1|AE007579_1 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
Length = 185
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 5 KLANYIELSMYAALIFISVQVLRVPVGMQF---IHLGNALVVIAVLIYGSKKGALVASLG 61
+ + +++S+ +A++F++ ++ +PVG+ + +HLG++++ IA ++ S+ L +++G
Sbjct: 11 NVKDIVQISLMSAIVFVATKLTAIPVGIGYKGVVHLGDSMIFIAAILLSSRNAVLSSAIG 70
Query: 62 LGIFDVLN 69
+ ++D+L+
Sbjct: 71 MSLYDILS 78
>ref|ZP_01994420.1| hypothetical protein DORLON_00405 [Dorea longicatena DSM 13814]
gb|EDM64556.1| hypothetical protein DORLON_00405 [Dorea longicatena DSM 13814]
Length = 186
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASL 60
+ L I +++AAL ++ +R+P +IH G+A+V++A +I G G L +
Sbjct: 13 NSNLKKIIMTALFAALACVATMSIRIPTPGTGGYIHPGDAIVILAGIILGPVYGMLAGGI 72
Query: 61 GLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKK 102
G + D++ GY V IT++ + L+ L+Y++ + K
Sbjct: 73 GSALSDLIGGYFVYVPITLVIKGLVALVSGLIYQKMCRYGKN 114
>ref|ZP_02418618.1| hypothetical protein ANACAC_01201 [Anaerostipes caccae DSM 14662]
gb|EDR97580.1| hypothetical protein ANACAC_01201 [Anaerostipes caccae DSM 14662]
Length = 176
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 13 SMYAALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNG 70
+++ AL + V+++P +IHLG+A V+++ +I G K G+L A +G D+ +G
Sbjct: 11 ALFTALCCVGTMVIQIPTPATHGYIHLGDAFVILSGVILGKKYGSLAAGIGSAFADIFSG 70
Query: 71 YA 72
YA
Sbjct: 71 YA 72
>ref|YP_001309035.1| membrane -like protein [Clostridium beijerinckii NCIMB 8052]
gb|ABR34079.1| membrane -like protein [Clostridium beijerinckii NCIMB 8052]
Length = 203
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 13/185 (7%)
Query: 3 SQKLANYIELSMYAALIFISVQVL--RVPVGMQFI--HLGNALVVIAVLIYGSKKGALVA 58
+ ++ I+ + AAL F+S L ++PVG + H+GNA V+A L+ G G L
Sbjct: 5 NSRIVKVIQTGVLAALCFVSFTFLSIKIPVGEDAVSLHIGNAFCVLAALLLGGWYGGLSG 64
Query: 59 SLGLGIFDVLN-GYASVVWITILESLAICLILHLV---YERAMQSSKKPKAIITITVIAA 114
++G+ I D+L+ YA T + L I LI L+ Y + +SS K K I T+IAA
Sbjct: 65 AIGMTISDLLDPTYAIGAPKTFILKLCIGLITGLIAHKYAKIDESSDK-KYIAKWTIIAA 123
Query: 115 LSKLTINLIKYLLLAYIGTQLPLSVSFWVA--LGKIG--GSFGTSFVTLVAVPLLYPVIK 170
+ L N++ + Y Q L +A L KI +F + V+++ V ++Y I+
Sbjct: 124 IGGLAFNVVFDPIAGYFYKQYILGQPQQMAAVLAKISVFATFVNAVVSVILVSIIYNAIR 183
Query: 171 NLKEK 175
+ K
Sbjct: 184 PVLSK 188
>ref|YP_001567379.1| membrane protein-like protein [Petrotoga mobilis SJ95]
gb|ABX31056.1| membrane protein-like protein [Petrotoga mobilis SJ95]
Length = 260
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 17 ALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYA 72
AL+F+ ++VPV ++HLG++++ I+ +++G + GAL LG + D++ GYA
Sbjct: 14 ALVFVLTFAIKVPVPFTRGYVHLGDSMIFISAILFGRRVGALAGGLGSALADLVGGYA 71
>ref|YP_001039542.1| hypothetical protein Cthe_3154 [Clostridium thermocellum ATCC
27405]
gb|ABN54349.1| conserved hypothetical protein [Clostridium thermocellum ATCC
27405]
Length = 183
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 14 MYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYAS 73
M AL+F++ V ++P + +LG+++++IA ++ G K G L ++G + D+ GY
Sbjct: 18 MMIALVFLATYVTKIPTAVGPFNLGDSVIIIAAVLLGKKSGFLAGAIGSSVADIAMGYQH 77
Query: 74 VVWITI----LESLAICLILHLVYER 95
+T E L++H++ +R
Sbjct: 78 FAPVTFVVKGFEGFVAGLVVHVLSKR 103
>ref|ZP_02438067.1| hypothetical protein CLOSS21_00505 [Clostridium sp. SS2/1]
gb|EDS22673.1| hypothetical protein CLOSS21_00505 [Clostridium sp. SS2/1]
Length = 173
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 19 IFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYASVVW 76
+F + +R+P+ IHLGN + I +++G K GA+ +G+G+FD+L+G+ +
Sbjct: 21 VFTAFVNVRLPIAANGGLIHLGNVPLFIMAILFGKKTGAIAGGVGMGLFDLLSGWTAWAP 80
Query: 77 ITILESLAICLILHLVYERAMQSSKKPKAIITITVI 112
T + + ++ + E+ Q K AI VI
Sbjct: 81 FTFIIVGIMGYVVGAMTEKHDQYGWKVAAIFAAFVI 116
>ref|YP_001815464.1| membrane spanning protein [Exiguobacterium sibiricum 255-15]
gb|ACB62447.1| membrane spanning protein [Exiguobacterium sibiricum 255-15]
Length = 180
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 2 SSQKLANYIELSMYAALIFISVQVL--RVPVGMQ--FIHLGNALVVIAVLIYGSKKGALV 57
SS + + SM AL+F++ + ++P+ +H+G A++ + +++G + +
Sbjct: 8 SSTRTRQLVITSMSIALVFVATFFINIKLPIAANGGLVHMGTAMLFLIAILFGPRTAMIA 67
Query: 58 ASLGLGIFDVLNGYA 72
++G+G+FD+++G+A
Sbjct: 68 GAVGMGLFDIMSGWA 82
>ref|ZP_02035013.1| hypothetical protein BACCAP_00605 [Bacteroides capillosus ATCC
29799]
gb|EDN01477.1| hypothetical protein BACCAP_00605 [Bacteroides capillosus ATCC
29799]
Length = 193
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 3 SQKLANYIELSMYAALIFISVQV---LRVPVGMQFIHLGNALVVIAVLIYGSKKGALVAS 59
+KL + + AAL+ + + L V VG HLGN + ++ + G G L A
Sbjct: 10 DEKLMFAVMAGLMAALVAVGSALRITLPVNVGTTSFHLGNIMCALSGIFLGPVGGGLAAG 69
Query: 60 LGLGIFDVLNG-YASVVWITILESLAICLILHLVYERAMQSSKK 102
+G I+D+ N Y S WIT L A L + L+ + ++
Sbjct: 70 IGSAIYDMTNPLYISECWITFLTKGAYGLAVGLIAWSGHRRGER 113
>ref|ZP_02948439.1| conserved hypothetical protein [Clostridium butyricum 5521]
gb|EDT76574.1| conserved hypothetical protein [Clostridium butyricum 5521]
Length = 204
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 5 KLANYIELSMYAALIFISVQVL--RVPV---GMQFIHLGNALVVIAVLIYGSKKGALVAS 59
KL ++ ++ AAL ++S L ++PV +H+GNA V+A L+ G G L +
Sbjct: 7 KLKKLMQTALLAALCYVSFTFLQIKIPVPGGDSTSLHIGNAFCVLAALLLGGSYGGLAGA 66
Query: 60 LGLGIFDVLNG-YASVVWITILESLAICLILHLVYER--AMQSSKKPKAIITITVIAALS 116
+G+ I D+++ Y +V T + L I LI V + + S K I ++IA++
Sbjct: 67 VGMTIADLMDPVYITVAPKTFILKLCIGLITGFVAHKIAKISESNDKKYIFKWSIIASVC 126
Query: 117 KLTINLIKYLLLAYIGTQLPL--SVSFWVALGKIGG--SFGTSFVTLVAVPLLYPVIKNL 172
L N+I ++ + Q L F L K+ +F + V+++ V LY ++ L
Sbjct: 127 GLAFNVIADPVVGFFYKQYVLGQPQEFAKVLAKLSAITTFANAVVSVILVAFLYNTLRPL 186
Query: 173 KEKVTI 178
K +
Sbjct: 187 LTKANL 192
>ref|NP_782545.1| membrane spanning protein [Clostridium tetani E88]
gb|AAO36482.1| membrane spanning protein [Clostridium tetani E88]
Length = 185
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 26 LRVP-VGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYASVVW 76
+R+P + ++H G+++V +A +I G K G + A+ G+ + DV +GY ++W
Sbjct: 31 IRIPTLTGGYVHPGDSMVFLAAIILGKKSGVIAAAFGMALADVFSGY--MIW 80
>ref|ZP_02080551.1| hypothetical protein CLOLEP_02005 [Clostridium leptum DSM 753]
gb|EDO61608.1| hypothetical protein CLOLEP_02005 [Clostridium leptum DSM 753]
Length = 197
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 13 SMYAALIFISVQV-LRVPVGM---QFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVL 68
++ AAL+F+S Q +++P+GM I GN +++ L+ G G L A +G FD+L
Sbjct: 20 ALMAALVFVSTQFNIKIPLGMGVTSMISFGNIFCILSALLLGPIYGGLAAGIGSFFFDLL 79
Query: 69 N 69
+
Sbjct: 80 D 80
>ref|YP_001181083.1| hypothetical protein Csac_2314 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|ABP67892.1| putative membrane protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 184
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 17 ALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYASVVW 76
A +F+ +++P+ + ++G+ ++++A +++G G L S G + D+ +GY
Sbjct: 16 AAVFVLTFTIKIPLLTGYFNIGDVIIMLASILFGKGVGFLSGSFGSALSDIASGYLVYAP 75
Query: 77 ITILESLAICLILHLVYERAMQSSKKPK-AIITITVIAAL 115
T L I L++E+ ++ KKP I TV++ +
Sbjct: 76 FTFLIKGLEGYICGLIFEK-LEKGKKPNLGFIVATVLSGI 114
>ref|ZP_02423455.1| hypothetical protein EUBSIR_02314 [Eubacterium siraeum DSM 15702]
gb|EDR99703.1| hypothetical protein EUBSIR_02314 [Eubacterium siraeum DSM 15702]
Length = 178
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASL 60
++ L + +++AAL ++ V+++P+ + +++LG+ +V+ +V + GS G A +
Sbjct: 4 TKNLTLMVTAAVFAALTCVATMVVQIPMPLTKGYVNLGDVMVLTSVWLIGSPWGVAAAGI 63
Query: 61 GLGIFDVLNGYA 72
G + D+L GYA
Sbjct: 64 GSAMADLLTGYA 75
>ref|ZP_02211862.1| hypothetical protein CLOBAR_01478 [Clostridium bartlettii DSM
16795]
gb|EDQ96574.1| hypothetical protein CLOBAR_01478 [Clostridium bartlettii DSM
16795]
Length = 174
Score = 37.0 bits (84), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 8 NYIELSMYAALIFISVQVL--RVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLG 63
+ +E ++ AL++I+ + + R+P+ +HLGN ++ IA +++G KKGA + G+G
Sbjct: 13 DLVETALLIALVYIATRFINIRLPIAASGGLVHLGNTMLFIAAIVFGPKKGAAAGAFGMG 72
Query: 64 IFDVLNGYA 72
+FD+L+ +A
Sbjct: 73 LFDLLSEWA 81
>ref|NP_687138.1| hypothetical protein SAG0102 [Streptococcus agalactiae 2603V/R]
ref|ZP_00788383.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
gb|AAM99010.1|AE014196_6 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gb|EAO72897.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
Length = 154
Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M +K + ++L++ A+ + + +P F+ L +A + A +G K+GA+V +L
Sbjct: 1 MRKEKTSQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGAL 60
Query: 61 GLGIFDVLNGYASVVWITIL 80
+ D+L GY + ++ ++L
Sbjct: 61 AGFLIDLLKGYPNWMFFSLL 80
>ref|NP_734571.1| hypothetical protein gbs0101 [Streptococcus agalactiae NEM316]
ref|ZP_00786064.1| Unknown [Streptococcus agalactiae COH1]
ref|ZP_00790782.1| Unknown [Streptococcus agalactiae 515]
emb|CAD45746.1| Unknown [Streptococcus agalactiae NEM316]
gb|EAO70481.1| Unknown [Streptococcus agalactiae 515]
gb|EAO75203.1| Unknown [Streptococcus agalactiae COH1]
Length = 154
Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M +K + ++L++ A+ + + +P F+ L +A + A +G K+GA+V +L
Sbjct: 1 MRKEKTSQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGAL 60
Query: 61 GLGIFDVLNGYASVVWITIL 80
+ D+L GY + ++ ++L
Sbjct: 61 AGFLIDLLKGYPNWMFFSLL 80
>ref|ZP_02089932.1| hypothetical protein FAEPRAM212_00161 [Faecalibacterium prausnitzii
M21/2]
gb|EDP23047.1| hypothetical protein FAEPRAM212_00161 [Faecalibacterium prausnitzii
M21/2]
Length = 210
Score = 36.2 bits (82), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 16 AALIFISVQVLRVPV-GMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYASV 74
AAL ++ R+P G HLGN + L+ G L ++GL + D+L G
Sbjct: 35 AALSLVAYLFFRIPFYGGSSFHLGNTFTALTALLLDGVSGGLAGAIGLALADILAGDPGY 94
Query: 75 VWITILESLAICL----ILHLVYERAMQSSKKPKAIITITVIAALSKLTINLIKYLLLAY 130
T + I + + H V++ Q ++ + +++A S L +N+ L Y
Sbjct: 95 AITTFVLKFIIGITCGAVAHKVFKLRDQDRHSAGYLVKV-IVSAGSGLLLNVFTDPFLGY 153
Query: 131 IGTQLPLSVSFWV--ALGKIGGSFGTSFVTLVA 161
+ V AL KI G G +FV VA
Sbjct: 154 FRNVYIFGQEYTVAQALTKIAG--GVTFVNSVA 184
>ref|YP_001558003.1| hypothetical protein Cphy_0878 [Clostridium phytofermentans ISDg]
gb|ABX41264.1| hypothetical protein Cphy_0878 [Clostridium phytofermentans ISDg]
Length = 286
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 26 LRVPVG--MQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNG-YASVVWITILES 82
+ +PVG H GNA VV+A L+ G G L ++GL + D+++G Y +V T
Sbjct: 114 IDIPVGPGSTAFHFGNAFVVVAALLLGGSWGGLAGAVGLSLADLMSGKYFTVAPQTFFLK 173
Query: 83 LAICLILHLVYERAMQSS--KKPKAIITITVIAALSKLTINLIKYLLLAY------IGTQ 134
L I LI V + S K I+T +++A+++ L N+I ++ Y +G Q
Sbjct: 174 LCIGLIAGFVAHQIFHISTLNKKSKILTASIVASVAGLGFNVIADPIVGYFYKKIILGVQ 233
Query: 135 LPLSVSFWVALGKIGGSFGTSFVTLV 160
L+++ W + + T+FV V
Sbjct: 234 GDLAIN-WAKMTAV-----TTFVNAV 253
>ref|YP_001691342.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
dbj|BAG07452.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
Length = 166
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPV--GMQFIHLGNALVVIAVLIYGSKKGALVA 58
M+++K+ +++ AL ++++PV M +++LG+ +++++ + +G G + A
Sbjct: 1 MNTKKIT---TAAIFIALTTFFTMIVKIPVSPAMGYVNLGDFIILLSTVAFGPIIGMIAA 57
Query: 59 SLGLGIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVIAAL 115
+ G + D+L GYA+ T + + L++ L ++ +++K ++T VI L
Sbjct: 58 AFGSALADLLLGYAAFAPFTFVVKGLMALVMGLFLKKV--NNQKTSTVLTAGVICEL 112
>ref|YP_001321472.1| hypothetical protein Amet_3693 [Alkaliphilus metalliredigens
QYMF]
gb|ABR49813.1| conserved hypothetical protein [Alkaliphilus metalliredigens
QYMF]
Length = 173
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVA 58
M Q + + L + AL+ ++ + VPV FIH+G++++ +A +++G +KGA+ A
Sbjct: 1 MRQQSVQDLAILGLLTALVAVATMAITVPVPATEGFIHMGDSMIFLAAILFGKRKGAIAA 60
Query: 59 SLGLGIFDVLNGY 71
G + DVL GY
Sbjct: 61 GAGSALADVLLGY 73
>ref|YP_328826.1| hypothetical protein SAK_0152 [Streptococcus agalactiae A909]
ref|ZP_00783392.1| Unknown [Streptococcus agalactiae H36B]
gb|ABA45252.1| membrane protein, putative [Streptococcus agalactiae A909]
gb|EAO77871.1| Unknown [Streptococcus agalactiae H36B]
Length = 154
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M +K ++L++ A+ + + +P F+ L +A + A +G K+GA+V +L
Sbjct: 1 MRKEKTNQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGAL 60
Query: 61 GLGIFDVLNGYASVVWITIL 80
+ D+L GY + ++ ++L
Sbjct: 61 AGFLIDLLKGYPNWMFFSLL 80
>ref|ZP_02185670.1| hypothetical protein CAT7_05353 [Carnobacterium sp. AT7]
gb|EDP67548.1| hypothetical protein CAT7_05353 [Carnobacterium sp. AT7]
Length = 160
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 10 IELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLN 69
+ ++ AL + ++R+P +I+LG+ +++ A L G K G V LG + D++
Sbjct: 10 VTFALLMALTIVMTILVRIPSFHGYINLGDMVLLFAALFLGKKAGFFVGGLGSALADIII 69
Query: 70 GYASVVWIT 78
GYA IT
Sbjct: 70 GYAYYAPIT 78
>ref|ZP_02432393.1| hypothetical protein CLOSCI_02639 [Clostridium scindens ATCC 35704]
gb|EDS06279.1| hypothetical protein CLOSCI_02639 [Clostridium scindens ATCC 35704]
Length = 200
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPVGM-----QFIHLGNALVVIAVLIYGSKKGALV 57
+Q + + ++ AAL ++S L++ + M IH+GNA V+A L+ G G L
Sbjct: 5 NQTVIKLAQTAILAALCYVSFTFLQIKIPMPGGDATSIHIGNAFCVLAALLLGGAYGGLA 64
Query: 58 ASLGLGIFDVLNG-YASVVWITILESLAICLILHLVYER--AMQSSKKPKAIITITVIAA 114
++G+G+ D+++ Y + T + + I LI+ LV R + S K + ++IA+
Sbjct: 65 GAIGMGVADLMDPIYITGAPKTFILKMCIGLIVGLVAHRIARINDSSDKKYVFKWSMIAS 124
Query: 115 LSKLTINLIKYLLLAY 130
++ L N++ ++ Y
Sbjct: 125 VAGLGFNVVADPIVGY 140
>ref|NP_815644.1| hypothetical protein EF1968 [Enterococcus faecalis V583]
gb|AAO81714.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 172
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 11 ELSMYAALIFISVQV-----LRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGLGIF 65
++S+YA + ++V V + VP F+ L +A + IA L++G G V +L G+
Sbjct: 8 KISLYAVITALTVAVSMVFIIPVPATNGFVTLADAGIYIASLLFGPIGGLTVGALSGGLI 67
Query: 66 DVLNGY 71
D+L+GY
Sbjct: 68 DLLSGY 73
>ref|YP_001559188.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
gb|ABX42449.1| small GTP-binding protein [Clostridium phytofermentans ISDg]
Length = 416
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 3 SQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASLGL 62
S K + I+L + +SV+ ++P+ I + +V++ + + KG L+
Sbjct: 157 SAKTKDNIDLLKTKMIEALSVEEKQIPIVADLISPSDFVVLVVPIDKAAPKGRLILPQQQ 216
Query: 63 GIFDVLNGYASVVWITILESLAICLILHLVYERAMQSSKKPKAIITITVI 112
I D+L+ A+ AI + H + E +Q KKPK +IT + +
Sbjct: 217 TIRDILDANAT----------AIVVKEHELKETLLQLGKKPKLVITDSQV 256
>ref|YP_487823.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
gb|ABD08912.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
Length = 1046
Score = 33.5 bits (75), Expect = 6.1, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 54 GALVASLGLGIFDVLNGYASVVWITILESLAI---CLILHLVYERAMQSSKKPKAIITIT 110
G + ASLGL + + G+ +++ + L + + +++ + Q S + AI+ T
Sbjct: 896 GVIGASLGLNVANAPFGFVALLGLIALAGMIMRNTVILVDQIETDVAQGSTRRVAIVEAT 955
Query: 111 VIAALSKLTINLIKYLLLAYIGTQLPLSVS-FW--VALGKIGGSFGTSFVTLVAVPLLY 166
V A + LA I +PLS S FW +A+ +GG F +F+TL +P LY
Sbjct: 956 VRRARP------VVLTALAAILAMIPLSRSAFWGPMAITIMGGLFVATFLTLFYLPGLY 1008
>ref|YP_184515.1| hypothetical protein TK2102 [Thermococcus kodakarensis KOD1]
dbj|BAD86291.1| hypothetical membrane protein, conserved, DUF1393 family
[Thermococcus kodakarensis KOD1]
Length = 199
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 24 QVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYASVVWITILE 81
V++VP +I+LG+ +V+ +++G GA +G + DV+ GY IT++
Sbjct: 55 NVIKVPTPATGGYINLGDTMVMFTAMLFGPVIGAFAGGVGSALGDVMGGYPGWAPITLVV 114
Query: 82 SLAICLILHLVYERAMQSS 100
L++ V +R +S
Sbjct: 115 KGIEGLVVGYVAKRMQGNS 133
>ref|YP_582737.1| protein of unknown function UPF0118 [Ralstonia metallidurans CH34]
gb|ABF07468.1| protein of unknown function UPF0118 [Ralstonia metallidurans CH34]
Length = 367
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 98 QSSKKPKAIITITVIAALSKLTINLIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFV 157
+ + AI + AA+ + N+IK LL++ GT LPL W+ +G +GG+ F+
Sbjct: 268 HTGETGWAIFMVVWGAAVVGMADNVIKPLLISK-GTGLPL---IWIMMGVLGGALAFGFL 323
Query: 158 TLVAVPLLYPVIKNLKEKVTIGQAKR 183
+ P + V L TIG +R
Sbjct: 324 GVFIGPTVLAVAYALLRDWTIGNQER 349
>ref|NP_359042.1| hypothetical protein spr1449 [Streptococcus pneumoniae R6]
ref|YP_816879.1| hypothetical protein SPD_1422 [Streptococcus pneumoniae D39]
gb|AAL00253.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gb|ABJ54062.1| membrane protein, putative [Streptococcus pneumoniae D39]
Length = 153
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 1 MSSQKLANYIELSMYAALIFISVQVLRVPVGMQFIHLGNALVVIAVLIYGSKKGALVASL 60
M K A +S+ AL + L++P + L +A V A +GS++GA+V L
Sbjct: 1 MKQTKTAKIALVSLLTALSVVLGYFLKIPTPTGILTLLDAGVFFAAFYFGSREGAVVGGL 60
Query: 61 GLGIFDVLNGYASVVWITILE 81
+ D+L+GY ++ +++
Sbjct: 61 ASFLIDLLSGYPQWMFFSLVN 81
>ref|YP_001691365.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
dbj|BAG07475.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
Length = 191
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 5 KLANYIELSMYAALIFISVQVL--RVPV-GMQF--IHLGNALVVIAVLIYGSKKGALVAS 59
K ++ ++ AAL FI+ L +VPV G F IH GN +V+A L+ G G L +
Sbjct: 4 KTHKLVQCAVLAALCFITFTYLQIKVPVPGGDFTSIHFGNVFLVLAALLLGGLYGGLAGA 63
Query: 60 LGLGIFDVLNG-YASVVWITILESLAICLILHLVYERA--MQSSKKPKAIITITVIAALS 116
+G+ I D+++ Y V T + L I LI+ + ++ + S K I+ VIA+ +
Sbjct: 64 IGMTIADIMDPVYIMVAPKTFVLKLCIGLIVGAIAHKSKKINESNDNKYILKWAVIASCA 123
Query: 117 KLTIN-----LIKYLLLAYIGTQLPLSVSFWVALGKIGGSFGTSFVTLVAVPLLY----P 167
+ N L+ Y Y+ Q P ++ +A G +F + VT++ +LY P
Sbjct: 124 GMLFNVFADPLVGYFYKLYVLGQ-PQQIASALAKISAGVTFFNAVVTVIVANILYMAVRP 182
Query: 168 VIKN 171
V+K
Sbjct: 183 VLKR 186
>ref|ZP_02093461.1| hypothetical protein PEPMIC_00212 [Peptostreptococcus micros ATCC
33270]
gb|EDP24768.1| hypothetical protein PEPMIC_00212 [Peptostreptococcus micros ATCC
33270]
Length = 183
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 16 AALIFISVQV-LRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLN 69
AA++F++ Q+ +++P+G +H+GN ++ L+ G G L A LG IFD++N
Sbjct: 17 AAVVFVASQIQIQIPLGASATRVHIGNGFCLLCGLLLGPIAGGLSAGLGSAIFDLIN 73
>ref|NP_622589.1| hypothetical protein TTE0937 [Thermoanaerobacter tengcongensis MB4]
gb|AAM24193.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 164
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 17 ALIFISVQVLRVPVGMQ--FIHLGNALVVIAVLIYGSKKGALVASLGLGIFDVLNGYAS- 73
AL+ I V+++P +I++G++ + + ++G G + LG + D+L+GYA
Sbjct: 17 ALVTIGTMVIQIPTPATKGYINVGDSFIFLTSALFGPAMGFISGGLGSSLADLLSGYAYW 76
Query: 74 VVWITILESLAICLILHLVYERAMQSSK 101
W +++ L LI+ ++Y+ + +K
Sbjct: 77 APWTLVIKGLE-GLIVGILYKGHSEYAK 103
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.326 0.141 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 675,361,276
Number of extensions: 24485867
Number of successful extensions: 96440
Number of sequences better than 10.0: 334
Number of HSP's gapped: 98988
Number of HSP's successfully gapped: 334
Length of query: 185
Length of database: 2,222,278,849
Length adjustment: 126
Effective length of query: 59
Effective length of database: 1,401,375,745
Effective search space: 82681168955
Effective search space used: 82681168955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 74 (33.1 bits)