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Join Evaluation Legend
- Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <100 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
- Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
- Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
- Certificate submitted, not yet approved.
- Certificate submitted and approved.
- Valid, contained clone
- Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AL713968.9 and AL672247.8
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AL713968.9 Mouse DNA sequence from clone RP23-387L21 on chromosome X Contains the 3' end of the Fgf13 gene for fibroblast growth factor 13, complete sequence [htgs_phase3]
Length: 100,240 bp
AL672247.8 Mouse DNA sequence from clone RP23-95I19 on chromosome X Contains part of the Fgf13 gene for fibroblast growth factor 13, a histidyl-tRNA synthetase-like (Harsl) pseudogene and two CpG islands, complete sequence [htgs_phase3]
Length: 224,241 bp
Alignment Summary
Join evaluation: Alignment count: 1
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Alignment 1 of 1
Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 0 BAC and 5 Fosmid bridging clones. 0 BAC and 5 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL713968.9 >98241 gaattccttagcagccagacctactttccgtggctattttctcagccaacaatgggaata 98300 AL672247.8 >1 ............................................................ 60 AL713968.9 >98301 tttctaggaactaacaaatctgagggaaatgaatccaaattttgaaaacagaatgaatta 98360 AL672247.8 >61 ............................................................ 120 AL713968.9 >98361 tgagaaccaagaattttttagtcctcagaaacaaatgagtaagtctgcagatatctgtaa 98420 AL672247.8 >121 ............................................................ 180 AL713968.9 >98421 attgaaagaaacaacaattattaatattgaaggaaagggggcactatttgtaattttgtt 98480 AL672247.8 >181 ............................................................ 240 AL713968.9 >98481 ttaattattctaaataaatatttgtagacaaaggtgtataacaaacaccttcagatcact 98540 AL672247.8 >241 ............................................................ 300 AL713968.9 >98541 gggcttcagtaattgcaaataaaactccattttgatgcatttccttcttaattcaacatt 98600 AL672247.8 >301 ............................................................ 360 AL713968.9 >98601 atggtctccagtttagtttaaagaaatcccattgcatagccatgcaagtaactcaatgtt 98660 AL672247.8 >361 ............................................................ 420 AL713968.9 >98661 aaaatatcaattagtctcagacttattggtataatgtggcaggggcaaaagcttgtaaca 98720 AL672247.8 >421 ............................................................ 480 AL713968.9 >98721 atgaattatcgcggtatgaaaccactcctgcctcttgggatgaggttcatctttaagagt 98780 AL672247.8 >481 ............................................................ 540 AL713968.9 >98781 ggagatagcatgctatttcaggatcactgtgtgggtgagaaatttttctggggggaaaaa 98840 AL672247.8 >541 ............................................................ 600 AL713968.9 >98841 gtaataaaatccaaaggacagccataaatctatctagattaccatggagatgacatttgg 98900 AL672247.8 >601 ............................................................ 660 AL713968.9 >98901 atcatccttcagatagtgtcaacactatttgctcaactttgtattttggatgtttccatg 98960 AL672247.8 >661 ............................................................ 720 AL713968.9 >98961 ttcaacttcctgtcggtgagcctatgcaaacagggttatgtcacatgatcatattttgca 99020 AL672247.8 >721 ............................................................ 780 AL713968.9 >99021 ttgacataaggatttggcaaagtttgtttgaattaaaaacaaataaaaagaacccaatgt 99080 AL672247.8 >781 ............................................................ 840 AL713968.9 >99081 caacaatatgctggtacatactatttatttagcagtcacttactgtaagtgctgtcctcg 99140 AL672247.8 >841 ............................................................ 900 AL713968.9 >99141 tctttggtgccatcaatggttccatctgcctgcagttgcaagtggtagccttgtcggctg 99200 AL672247.8 >901 ............................................................ 960 AL713968.9 >99201 tatagtttggtaactatacccttaagctgaggctctgcaaagagaacaatggtttgggtc 99260 AL672247.8 >961 ............................................................ 1020 AL713968.9 >99261 aattgatataatatatatatatatatatatatatatatatatatatatatatatatatat 99320 AL672247.8 >1021 ............................................................ 1080 AL713968.9 >99321 atagtggaagagattcaggattcaaaattctactttaacatagaaattttagtgggggtt 99380 AL672247.8 >1081 ............................................................ 1140 AL713968.9 >99381 aaaaatcaaactatattttgaaagagtcctctgaaagaaagaaaacaagcaaacaaatga 99440 AL672247.8 >1141 ............................................................ 1200 AL713968.9 >99441 gaaatttaaggaaaaaacacattagaatatatgaaaaaaacatttgatttctatttcaaa 99500 AL672247.8 >1201 ............................................................ 1260 AL713968.9 >99501 acattggtaatacactaaagcttttgacactgtctactatttctgatcactggccctttt 99560 AL672247.8 >1261 ............................................................ 1320 AL713968.9 >99561 gtatctagtggcactccacctcgttaaacattctgaatgagttggcaaatggtatagtct 99620 AL672247.8 >1321 ............................................................ 1380 AL713968.9 >99621 gccttctgaataatgtgttacttttcatgtggaaggaaaataaatacaaaaataatgtag 99680 AL672247.8 >1381 ............................................................ 1440 AL713968.9 >99681 agtagctcgccaaccggttgccaaacccaccagcaacaatttccttaagaataagcacaa 99740 AL672247.8 >1441 ............................................................ 1500 AL713968.9 >99741 tttgtagaaggctatctatctaacctggaatcccatcaaaggacctctagctacaaaact 99800 AL672247.8 >1501 ............................................................ 1560 AL713968.9 >99801 gagtctcccaacataagataataaagagtgggtagaaaaaacagccatctccagccctat 99860 AL672247.8 >1561 ............................................................ 1620 AL713968.9 >99861 cagatttttttttccttatggaaaatggatgtgaaaagaacagtttctgttaatgaagag 99920 AL672247.8 >1621 ............................................................ 1680 AL713968.9 >99921 gaaggaaaataaaatcgtacttattttcaaatttaatataaaacacatgattactcaaaa 99980 AL672247.8 >1681 ............................................................ 1740 AL713968.9 >99981 cataggttcttgattaaaatgatcatcaagtattaatcaccatagattaatcaagcattt 100040 AL672247.8 >1741 ............................................................ 1800 AL713968.9 >100041 aatttatttgctttcattgaataccgacacctgcattaaaataatatttattggtgtcac 100100 AL672247.8 >1801 ............................................................ 1860 AL713968.9 >100101 ataatcacacgttgtaatggcttttttaaacaaatttaattcacagcttatgcattacaa 100160 AL672247.8 >1861 ............................................................ 1920 AL713968.9 >100161 actttgtgcaaactgaagacgtatgcctgcttttggaaattccagggtgtgtagaacaca 100220 AL672247.8 >1921 ............................................................ 1980 AL713968.9 >100221 cagagaaataactgatggat 100240 AL672247.8 >1981 .................... 2000
| Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
| A | 100240 | 2001 | + | + | chenhc | Taxid 10090 chrom X Reference assembly | 2008-11-20 17:02:24.100 |
Events
| Id | Type | Date | Whodid | Comment |
| 4708 | ImportOldDb | 09/02/2005 14:32:00 | f_old_db | |
| 4709 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
| 179860 | CreateSwitchPt | 11/20/2008 17:02:24 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
BAC Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| C3H-204O16 | AL713968.9 | 99.6% | pos 58547 (F-) | |||
| C3H-20A10 | AL713968.9 | 99.45% | pos 67001 (F-) | |||
| CH29-22I16 | AL672247.8 | 99.61% | pos 176435 (F+) | |||
| CH29-484H4 | AL672247.8 | 99.75% | pos 181953 (R-) | |||
| CH29-489K5 | AL672247.8 | 100% | pos 107814 (R+) | |||
| CH29-503I16 | AL713968.9 | 99.58% | pos 88512 (F-) | |||
| RP23-129L21 | AL672247.8 | 99.58% | pos 28083 (F+) | |||
| RP23-469H13 | AL672247.8 | 99.46% | pos 12653 (R-) | |||
| RP24-187H19 | AL713968.9 | 99.61% | pos 12724 (R-) | |||
| RP24-345D21 | AL672247.8 | 99.19% | pos 67816 (F+) | |||
| RP24-394L4 | AL672247.8 | 99.25% | pos 215628 (R-) | AL672247.8 | 99.32% | pos 61526 (F+) |
| RP24-70F24 | AL672247.8 | 99.04% | pos 60027 (F+) | |||
Fosmid Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| WI1-1142M5 | AL672247.8 | 100% | pos 87540 (R-) | AL672247.8 | 99.83% | pos 47448 (F+) |
| WI1-1212F2 | AL713968.9 | 99.76% | pos 16704 (R+) | AL713968.9 | 99.75% | pos 58514 (F-) |
| WI1-1249J7 | AL713968.9 | 100% | pos 88636 (R+) | AL672247.8 | 100% | pos 32976 (F-) |
| WI1-1298C16 | AL672247.8 | 100% | pos 80025 (R-) | AL672247.8 | 99.82% | pos 38615 (F+) |
| WI1-132K12 | AL713968.9 | 99.84% | pos 42211 (R-) | AL713968.9 | 100% | pos 3015 (F+) |
| WI1-1428M19 | AL713968.9 | 100% | pos 67284 (R+) | |||
| WI1-1503B10 | AL672247.8 | 99.67% | pos 109501 (R+) | AL672247.8 | 100% | pos 148110 (F-) |
| WI1-1539B14 | AL672247.8 | 100% | pos 138316 (R+) | AL672247.8 | 99.85% | pos 178679 (F-) |
| WI1-1569D18 | AL713968.9 | 99.58% | pos 16704 (R+) | AL713968.9 | 99.83% | pos 58512 (F-) |
| WI1-1569L12 | AL713968.9 | 100% | pos 58475 (F-) | |||
| WI1-1638D5 | AL672247.8 | 100% | pos 216541 (R-) | AL672247.8 | 100% | pos 178442 (F+) |
| WI1-1652P22 | AL713968.9 | 99.05% | pos 55882 (R+) | |||
| WI1-166C21 | AL672247.8 | 100% | pos 139296 (R+) | |||
| WI1-166H5 | AL672247.8 | 99.83% | pos 139296 (R+) | AL672247.8 | 99.69% | pos 178878 (F-) |
| WI1-1795H19 | AL713968.9 | 99.66% | pos 32823 (R+) | AL713968.9 | 99.68% | pos 74285 (F-) |
| WI1-1797F16 | AL713968.9 | 100% | pos 59294 (F+) | |||
| WI1-1970I21 | AL713968.9 | 99.78% | pos 88343 (R-) | AL713968.9 | 99.61% | pos 51095 (F+) |
| WI1-1977E16 | AL672247.8 | 100% | pos 193538 (R-) | AL672247.8 | 100% | pos 152421 (F+) |
| WI1-2038G15 | AL672247.8 | 100% | pos 151446 (R+) | AL672247.8 | 100% | pos 191420 (F-) |
| WI1-2043F24 | AL713968.9 | 100% | pos 44740 (R+) | AL713968.9 | 99.83% | pos 89444 (F-) |
| WI1-2068H17 | AL713968.9 | 99.81% | pos 92927 (R-) | AL713968.9 | 100% | pos 46380 (F+) |
| WI1-2085G15 | AL672247.8 | 100% | pos 171043 (R+) | AL672247.8 | 99.7% | pos 209333 (F-) |
| WI1-2126L13 | AL672247.8 | 99.83% | pos 161796 (R+) | AL672247.8 | 100% | pos 201011 (F-) |
| WI1-213D24 | AL672247.8 | 99.54% | pos 141672 (R-) | AL672247.8 | 99.59% | pos 102169 (F+) |
| WI1-2148J6 | AL672247.8 | 99.42% | pos 56094 (R+) | AL672247.8 | 100% | pos 98474 (F-) |
| WI1-2336I22 | AL672247.8 | 99.5% | pos 2531 (F+) | |||
| WI1-2372O7 | AL713968.9 | 99.77% | pos 89067 (F+) | |||
| WI1-2430M9 | AL713968.9 | 100% | pos 9398 (R+) | AL713968.9 | 100% | pos 48516 (F-) |
| WI1-2489O22 | AL713968.9 | 99.68% | pos 10208 (R-) | |||
| WI1-250H9 | AL672247.8 | 99.31% | pos 88367 (R+) | AL672247.8 | 99.09% | pos 118239 (F-) |
| WI1-2589I8 | AL713968.9 | 99.79% | pos 84237 (R-) | AL713968.9 | 99.83% | pos 45183 (F+) |
| WI1-260K12 | AL713968.9 | 100% | pos 90884 (R+) | AL672247.8 | 100% | pos 31341 (F-) |
| WI1-261D23 | AL713968.9 | 100% | pos 27082 (F-) | |||
| WI1-2711I21 | AL713968.9 | 99.83% | pos 16392 (F-) | |||
| WI1-2733P4 | AL672247.8 | 100% | pos 150151 (R+) | AL672247.8 | 100% | pos 189971 (F-) |
| WI1-2742H3 | AL672247.8 | 99.65% | pos 148223 (R+) | AL672247.8 | 100% | pos 187895 (F-) |
| WI1-2841L1 | AL672247.8 | 99.81% | pos 48428 (R-) | AL672247.8 | 100% | pos 7405 (F+) |
| WI1-2L24 | AL672247.8 | 99.82% | pos 42299 (R+) | AL672247.8 | 99.37% | pos 82263 (F-) |
| WI1-362D14 | AL713968.9 | 99.56% | pos 3120 (R+) | AL713968.9 | 100% | pos 45008 (F-) |
| WI1-376I22 | AL672247.8 | 99.04% | pos 143064 (F-) | |||
| WI1-480H10 | AL672247.8 | 100% | pos 42511 (F+) | |||
| WI1-497L7 | AL713968.9 | 100% | pos 92571 (R+) | AL672247.8 | 100% | pos 32577 (F-) |
| WI1-498N10 | AL713968.9 | 100% | pos 59543 (R+) | AL713968.9 | 100% | pos 99157 (F-) |
| AL672247.8 | 100% | pos 917 (F-) | ||||
| WI1-617J8 | AL672247.8 | 100% | pos 63808 (F+) | |||
| WI1-742D23 | AL672247.8 | 99.76% | pos 48640 (R+) | AL672247.8 | 99.57% | pos 89925 (F-) |
| WI1-812D7 | AL713968.9 | 99.63% | pos 99799 (R+) | AL672247.8 | 99.25% | pos 42029 (F-) |
| AL672247.8 | 99.63% | pos 1559 (R+) | ||||
| WI1-976A14 | AL713968.9 | 100% | pos 23883 (F+) | |||