BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE0706
(370 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42526220|ref|NP_971318.1| adenine-specific DNA modificat... 687 0.0
gi|109672863|ref|ZP_01375097.1| D12 class N6 adenine-specif... 360 6e-98
gi|57241653|ref|ZP_00369598.1| ulcer associated adenine spe... 356 2e-96
gi|154174314|ref|YP_001408867.1| DNA modification methylase... 355 3e-96
gi|154149203|ref|YP_001406656.1| D12 class N6 adenine-speci... 351 5e-95
gi|156741409|ref|YP_001431538.1| Site-specific DNA-methyltr... 347 9e-94
gi|57168349|ref|ZP_00367483.1| ulcer associated adenine spe... 341 4e-92
gi|57506160|ref|ZP_00372081.1| ulcer associated adenine spe... 337 7e-91
gi|86149729|ref|ZP_01067959.1| D12 class N6 adenine-specifi... 335 3e-90
gi|153952442|ref|YP_001397452.1| D12 class N6 adenine-speci... 335 4e-90
gi|118474860|ref|YP_892002.1| DNA modification methylase [C... 332 2e-89
gi|15791595|ref|NP_281418.1| DNA modification methylase (ad... 330 9e-89
gi|86151323|ref|ZP_01069538.1| D12 class N6 adenine-specifi... 329 2e-88
gi|57237212|ref|YP_178224.1| D12 class N6 adenine-specific ... 318 2e-85
gi|50083526|ref|YP_045036.1| putative DNA modification meth... 156 2e-36
gi|148556136|ref|YP_001263718.1| Site-specific DNA-methyltr... 155 4e-36
gi|15612196|ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYM... 132 4e-29
gi|83855987|ref|ZP_00949516.1| type II DNA modification enz... 132 4e-29
gi|2584890|gb|AAC45817.1| methylase HpyI [Helicobacter pylori] 131 9e-29
gi|109946919|ref|YP_664147.1| adenine-specific methyltransf... 130 2e-28
gi|12239882|gb|AAG49536.1| CATG-specific methyltransferase ... 130 2e-28
gi|78776331|ref|YP_392646.1| Site-specific DNA-methyltransf... 129 4e-28
gi|2584892|gb|AAC45818.1| methylase HpyI [Helicobacter pylori] 128 6e-28
gi|2584886|gb|AAC45814.1| methylase HpyI [Helicobacter pylori] 128 6e-28
gi|15645822|ref|NP_208000.1| ulcer associated adenine speci... 127 1e-27
gi|108563574|ref|YP_627890.1| type II adenine specific DNA ... 124 7e-27
gi|19705240|ref|NP_602735.1| Adenine-specific methyltransfe... 120 1e-25
gi|124002327|ref|ZP_01687180.1| modification methylase NlaI... 119 2e-25
gi|156068056|gb|ABU43763.1| hypothetical protein AR158_C217... 119 3e-25
gi|86144093|ref|ZP_01062430.1| Site-specific DNA-methyltran... 119 4e-25
gi|126640315|ref|YP_001083299.1| putative DNA modification ... 118 7e-25
gi|2454660|gb|AAC03127.1| DNA adenine methyltransferase [Ch... 117 9e-25
gi|155122767|gb|ABT14635.1| hypothetical protein NY2A_B236L... 116 2e-24
gi|127469|sp|P24582|MTN3_NEILA Modification methylase NlaII... 115 3e-24
gi|9631819|ref|NP_048600.1| hypothetical protein PBCV1_A251... 115 7e-24
gi|86131139|ref|ZP_01049738.1| Site-specific DNA-methyltran... 112 3e-23
gi|57506161|ref|ZP_00372082.1| ulcer associated adenine spe... 109 3e-22
gi|1589833|gb|AAC57944.1| DNA adenine methyltransferase [Ch... 107 9e-22
gi|32266549|ref|NP_860581.1| hypothetical protein HH1050 [H... 104 9e-21
gi|57242409|ref|ZP_00370347.1| ulcer associated adenine spe... 104 1e-20
gi|86154138|ref|ZP_01072337.1| modification methylase NlaII... 103 1e-20
gi|57505394|ref|ZP_00371322.1| ulcer associated adenine spe... 103 1e-20
gi|1518454|gb|AAB07029.1| M.HpyI 101 7e-20
gi|1480415|emb|CAA65583.1| Sse9I DNA-methyltransferase [Spo... 99 5e-19
gi|47093526|ref|ZP_00231287.1| DNA methyltransferase [Liste... 98 1e-18
gi|149369271|ref|ZP_01889123.1| Site-specific DNA-methyltra... 94 1e-17
gi|116831737|gb|ABK28845.1| DNA-methyltransferase [Riemerel... 94 2e-17
gi|127484|sp|P29347|MTS1_STRSA Modification methylase StsI ... 92 4e-17
gi|149923781|ref|ZP_01912173.1| site-specific DNA-methyltra... 87 3e-15
gi|145641806|ref|ZP_01797381.1| Adenine-specific methyltran... 86 4e-15
gi|156867475|gb|EDO60847.1| hypothetical protein CLOLEP_024... 85 8e-15
gi|58865224|emb|CAI52507.1| DNA-methyltransferase [Geobacil... 83 4e-14
gi|18148903|dbj|BAB83493.1| modification methylase STSI [St... 81 1e-13
gi|547932|sp|P35516|MTL1_LACLA Modification methylase LlaI ... 80 2e-13
gi|423901|pir||B47029 methylase LlaPI - phage nck202.50 (ph... 77 2e-12
gi|149019287|ref|ZP_01834649.1| Adenine-specific methyltran... 77 3e-12
gi|150421007|gb|EDN13292.1| Adenine-specific DNA methylase ... 72 5e-11
gi|51892573|ref|YP_075264.1| site-specific DNA-methyltransf... 68 9e-10
gi|154491492|ref|ZP_02031118.1| hypothetical protein PARMER... 67 2e-09
gi|153092519|gb|EDN73574.1| site-specific DNA-methyltransfe... 67 3e-09
gi|116217127|ref|ZP_01482941.1| hypothetical protein VchoR_... 63 2e-08
gi|15616566|ref|NP_244872.1| modification methylase [Bacill... 63 3e-08
gi|127451|sp|P14871|MTF1_FLAOK Modification methylase FokI ... 63 3e-08
gi|148724|gb|AAA24933.1| methyltransferase 62 4e-08
gi|153806193|ref|ZP_01958861.1| hypothetical protein BACCAC... 60 3e-07
gi|26553631|ref|NP_757565.1| adenine-specific DNA methyltra... 59 7e-07
>gi|42526220|ref|NP_971318.1| adenine-specific DNA modification methyltransferase [Treponema
denticola ATCC 35405]
gi|41816332|gb|AAS11199.1| adenine-specific DNA modification methyltransferase [Treponema
denticola ATCC 35405]
Length = 370
Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats.
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MKEQREENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVAR 60
MKEQREENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVAR
Sbjct: 1 MKEQREENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVAR 60
Query: 61 MLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISEN 120
MLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISEN
Sbjct: 61 MLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISEN 120
Query: 121 YAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTS 180
YAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTS
Sbjct: 121 YAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTS 180
Query: 181 GVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEI 240
GVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEI
Sbjct: 181 GVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEI 240
Query: 241 KNVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKS 300
KNVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKS
Sbjct: 241 KNVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKS 300
Query: 301 MEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIH 360
MEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIH
Sbjct: 301 MEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIH 360
Query: 361 VSEYLFVLKK 370
VSEYLFVLKK
Sbjct: 361 VSEYLFVLKK 370
>gi|109672863|ref|ZP_01375097.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
concisus 13826]
gi|112801771|gb|EAT99115.1| D12 class N6 adenine-specific DNA methyltransferase superfamily
[Campylobacter concisus 13826]
Length = 368
Score = 360 bits (925), Expect = 6e-98, Method: Composition-based stats.
Identities = 200/377 (53%), Positives = 260/377 (68%), Gaps = 16/377 (4%)
Query: 1 MKEQREENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVAR 60
MK ++EN+ +L QI+TYLGNKRSL+ IE VK L KEKL C D+FSGSG+VAR
Sbjct: 1 MKPAKQENQAYLKEQILTYLGNKRSLLGFIERGVKYAKDELKKEKLSCCDLFSGSGVVAR 60
Query: 61 MLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEI--ISSSLNKKIP---- 114
LK+ + ++ NDLE YS++ NSCYL N NELRDEI L K+I
Sbjct: 61 FLKQNSEFLVANDLELYSFITNSCYLQNAT-------NELRDEINFWQKKLEKEIEKSLC 113
Query: 115 -GIISENYAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEA 173
G I+ YAP+DD I GERVFYTRKNA IDT R LID+++ EE ++KFF APL+ A
Sbjct: 114 EGFITRLYAPQDDENIAFGERVFYTRKNAKFIDTARRLIDEVLPEE-MRKFFIAPLLYNA 172
Query: 174 SIHVNTSGVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDA 233
S+H NTSG+FKGF+K+K G+G FG G+NA++RI + L +P+FSNF+ E++ KDA
Sbjct: 173 SVHANTSGIFKGFHKNKE-GIGQFGGRGQNAISRITSDINLTKPIFSNFSVPFEVYQKDA 231
Query: 234 VILSKEIKNVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNK 293
+L+KE+ +D+ Y+DPPYNQHPYGSNYFMLNLI IS VSGI++ WNRSVFNK
Sbjct: 232 NLLAKELDGLDLVYLDPPYNQHPYGSNYFMLNLIASYEEPSKISKVSGISKDWNRSVFNK 291
Query: 294 PYLALKSMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRN 353
A ++ E+I++L A + +IS+NSEGFI+ +E L K G++ + KYN +RGSRN
Sbjct: 292 KSSASEAFFELIANLKAKFVLISFNSEGFINQDEFDKNLNKMGKVHLLRQKYNAYRGSRN 351
Query: 354 LNKRNIHVSEYLFVLKK 370
L RNIHV E L+VLKK
Sbjct: 352 LKARNIHVDELLYVLKK 368
>gi|57241653|ref|ZP_00369598.1| ulcer associated adenine specific DNA methyltransferase, putative
[Campylobacter lari RM2100]
gi|57017546|gb|EAL54323.1| ulcer associated adenine specific DNA methyltransferase, putative
[Campylobacter lari RM2100]
Length = 363
Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats.
Identities = 199/365 (54%), Positives = 255/365 (69%), Gaps = 5/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
EEN FL QIITYLGNKRSL+D + + K L KEK D+FSGSG+V+R +K Y
Sbjct: 3 EENPQFLKEQIITYLGNKRSLLDFLSKGFKFAQNELKKEKFSFCDVFSGSGVVSRFVKPY 62
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
AS II NDLE+YS +IN CYL+N+ E+ + + +I+ KK G ISE YAP D
Sbjct: 63 ASFIIANDLEDYSKIINECYLSNQNEHLLQELQKYYKFLITDLKLKK--GFISELYAPND 120
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
D I+K ERVFYT KNA+ +DT R I + N++K+F APLI EAS+H NTSGVFKG
Sbjct: 121 DKNIQKNERVFYTLKNAMYLDTMREKISNL--PNNMQKYFLAPLIYEASVHANTSGVFKG 178
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYKDKN G+G FG G+NAL+RI G +ELK PVFSNF E E+ KDA IL+KE+ ++D+
Sbjct: 179 FYKDKN-GIGKFGGIGENALSRIKGDIELKIPVFSNFTCEYEVLQKDANILAKELNDIDV 237
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
Y+DPPYNQHPYGSNYFMLNLI + IS +SGI + WNRSVFNK A ++ E+I
Sbjct: 238 VYLDPPYNQHPYGSNYFMLNLIANYKKPNEISKISGIPKDWNRSVFNKHKHAEDALYELI 297
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ + A ++SYN EGF+ E+ LQK+G+ + +E KYN FR SRNL+KR++H+ E L
Sbjct: 298 NDIKAKIVLLSYNCEGFVKKEKFLKRLQKFGKCEILEQKYNAFRASRNLSKRSMHIQEQL 357
Query: 366 FVLKK 370
+VLKK
Sbjct: 358 YVLKK 362
>gi|154174314|ref|YP_001408867.1| DNA modification methylase [Campylobacter curvus 525.92]
gi|112803756|gb|EAU01100.1| DNA modification methylase [Campylobacter curvus 525.92]
Length = 366
Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats.
Identities = 185/364 (50%), Positives = 251/364 (68%), Gaps = 3/364 (0%)
Query: 7 ENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYA 66
ENK++L+ QI+TYLGNKR+L+ IE+ +K + L ++KL C D+FSGSGIVAR LK+++
Sbjct: 2 ENKEYLSKQILTYLGNKRALLGFIEQGLKRVKDELGRDKLRCVDLFSGSGIVARFLKRHS 61
Query: 67 SKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDD 126
S ++ NDLE YS + N CYL N K + ++ + + G +SE YAPKD
Sbjct: 62 SFLVANDLELYSKITNECYLANVSARKLKELGRWHEILLENIKSNPQSGFVSELYAPKDQ 121
Query: 127 NKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGF 186
+ I + +RVFYT++NAL IDT R I+ + E ++ FF APL+ EAS NTSGVFKGF
Sbjct: 122 DHIRREDRVFYTKENALYIDTARAQIENL--PEAIRHFFIAPLLYEASTKANTSGVFKGF 179
Query: 187 YKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIA 246
YK+K +G+G FG GKNAL RI+G++ L P+FS FN + KDA L+ E++ +D+
Sbjct: 180 YKNK-SGIGQFGGEGKNALGRIMGRISLPMPIFSKFNVPFAVCQKDANDLAGELEQMDVV 238
Query: 247 YIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIIS 306
Y+DPPYNQHPY SNYFMLNLI KN IS VSGI +GWN+SV+NK A +S E++
Sbjct: 239 YLDPPYNQHPYSSNYFMLNLIAKNERPRSISRVSGIAKGWNKSVYNKKSAAEQSFFELVG 298
Query: 307 SLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLF 366
L A + +IS+NSEGFI E L K+GELK +E +YN FRGSRNL R++HV+E+L+
Sbjct: 299 KLKAKFIIISFNSEGFIERESFERNLTKFGELKVLEQRYNAFRGSRNLGSRSLHVTEFLY 358
Query: 367 VLKK 370
+LKK
Sbjct: 359 ILKK 362
>gi|154149203|ref|YP_001406656.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
hominis ATCC BAA-381]
gi|153805212|gb|ABS52219.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
hominis ATCC BAA-381]
Length = 363
Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats.
Identities = 202/364 (55%), Positives = 253/364 (69%), Gaps = 3/364 (0%)
Query: 7 ENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYA 66
EN+ FL+ QI+TYLGNKR+L+D I E V+ + K L KEKL CAD+FSGSGIVAR LK +
Sbjct: 2 ENEKFLSEQILTYLGNKRALLDFIGEGVEFVKKELKKEKLFCADLFSGSGIVARFLKANS 61
Query: 67 SKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDD 126
+I NDLE YS + N CYL+N +++R EI++ PG I+E YAPK+D
Sbjct: 62 EFLIANDLETYSKITNECYLSNISADFMSEISKIRTEILNEVYENLTPGFITELYAPKND 121
Query: 127 NKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGF 186
I ERVFYT KNA+ ID+ R I KI E ++KFF APL+ EAS H NTSGVFKGF
Sbjct: 122 KNIMPEERVFYTHKNAVFIDSARREISKISPE--MQKFFIAPLLYEASTHANTSGVFKGF 179
Query: 187 YKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIA 246
YK+K G+G FG G+NAL RILG + L PVFSNF+ I KDA L+ E++N DI
Sbjct: 180 YKNKK-GIGQFGGEGRNALKRILGDISLPLPVFSNFSVPFSIEQKDANKLAGELENCDIC 238
Query: 247 YIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIIS 306
Y+DPPYNQHPYGSNYFMLNLI K IS VSGI QGWN+SV+NK A ++ ++IS
Sbjct: 239 YLDPPYNQHPYGSNYFMLNLIAKYERPNEISQVSGIAQGWNKSVYNKKTRAAEAFFDLIS 298
Query: 307 SLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLF 366
L A + +IS+N+EGFI E L+K+G+L +E KYNTFRGSRNLN R I+V+E L+
Sbjct: 299 KLKAKFVLISFNNEGFIDKSEFIKNLEKFGKLNILEKKYNTFRGSRNLNNRKIYVTEILY 358
Query: 367 VLKK 370
+LKK
Sbjct: 359 ILKK 362
>gi|156741409|ref|YP_001431538.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
castenholzii DSM 13941]
gi|156232737|gb|ABU57520.1| Site-specific DNA-methyltransferase (adenine-specific) [Roseiflexus
castenholzii DSM 13941]
Length = 389
Score = 347 bits (889), Expect = 9e-94, Method: Composition-based stats.
Identities = 172/365 (47%), Positives = 257/365 (70%), Gaps = 3/365 (0%)
Query: 7 ENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYA 66
EN ++L+ Q+ITY+GNKR+L+ I ++ + + L K +L AD+FSGSG+V+R +K +A
Sbjct: 26 ENPEYLSRQLITYIGNKRALLGCIGIALERVKRRLGKNRLRVADLFSGSGVVSRYMKAHA 85
Query: 67 SKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIP-GIISENYAPKD 125
S +I ND+E+Y+ V + CYL N+ L +E+ ++ + + + +P G I E YAPKD
Sbjct: 86 SLLISNDIEDYAAVTSRCYLRNRSTVDFVLLSEIVADLNARVVAESLPKGFIEEMYAPKD 145
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
+ I K +RVFYTR+NA ID YR LI++ E +K PL++EAS+H NT+GVFKG
Sbjct: 146 EKNITKEDRVFYTRENARRIDNYRRLIEECPNE--MKDLLLGPLLSEASVHANTAGVFKG 203
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYK+++TGV FG SG +ALTRILG++ L+ PV S F + E+F +DA IL++ ++ +D+
Sbjct: 204 FYKNRHTGVEHFGGSGSDALTRILGRIMLESPVLSLFECDYEVFQEDANILARRLEGLDL 263
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
YIDPPYNQHPYGSNYFMLNLI+ + IS +SGI Q W RS +N AL +++++
Sbjct: 264 VYIDPPYNQHPYGSNYFMLNLIVHYQRPANISRISGIPQDWRRSGYNVKNKALPLLKDLL 323
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+DA + +IS+N+EGFI E M +L+K G++ +E+ YN FRGSRN N R+I+V+EY+
Sbjct: 324 EHIDASFILISFNNEGFIQPETMRILLEKIGKVDVIELPYNAFRGSRNFNNRSIYVTEYM 383
Query: 366 FVLKK 370
F++++
Sbjct: 384 FLVER 388
>gi|57168349|ref|ZP_00367483.1| ulcer associated adenine specific DNA methyltransferase, putative
[Campylobacter coli RM2228]
gi|57020157|gb|EAL56831.1| ulcer associated adenine specific DNA methyltransferase, putative
[Campylobacter coli RM2228]
Length = 367
Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats.
Identities = 192/365 (52%), Positives = 255/365 (69%), Gaps = 4/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ + + K+ K L K+K DIFSGSG+V+R K +
Sbjct: 2 KENPSFLKEQIITYLGNKRALLGFLNKGFKVAKKELGKDKFSFCDIFSGSGVVSRFAKAH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
++ I+ NDLENYS +IN CYL+NK++ +L +I++ +L + G ISE YAPK+
Sbjct: 62 SNYILANDLENYSKLINKCYLSNKDKNLTELLKHYH-KILTQNLEFQ-AGFISELYAPKN 119
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
+ I+K ERVFYT KNAL +DT R I+K + EE LK FF APLI EAS+H NTSGVFKG
Sbjct: 120 EACIQKDERVFYTLKNALYLDTLRQKIEKEIPEE-LKHFFIAPLIYEASVHSNTSGVFKG 178
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYK ++ GVG FG +NAL RI G +ELK P+FSNF+ E E+ KDA +L+KE++N+D+
Sbjct: 179 FYKGRD-GVGKFGGEAQNALKRIKGDIELKMPIFSNFSCEFEVVQKDANLLAKELENIDV 237
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
AY+DPPYNQHPY SNYFMLNLI + IS +SGI + WNRS+FNK A ++ E+I
Sbjct: 238 AYLDPPYNQHPYSSNYFMLNLIANYQRPDEISKISGIPRDWNRSIFNKEKQAEDALFELI 297
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ L A ++SYN EGF+ E+ LQ G+ + +E KY TFR SRNL R+IH+ E L
Sbjct: 298 NDLKAKIILLSYNCEGFVKKEKFLKRLQSLGKCQILEQKYPTFRASRNLKNRSIHIHEQL 357
Query: 366 FVLKK 370
++LKK
Sbjct: 358 YILKK 362
>gi|57506160|ref|ZP_00372081.1| ulcer associated adenine specific DNA methyltransferase, putative
[Campylobacter upsaliensis RM3195]
gi|57015555|gb|EAL52348.1| ulcer associated adenine specific DNA methyltransferase, putative
[Campylobacter upsaliensis RM3195]
Length = 362
Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats.
Identities = 193/365 (52%), Positives = 249/365 (68%), Gaps = 5/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ +++ K L KEKL D+FSGSGIV+R K +
Sbjct: 2 QENPAFLKEQIITYLGNKRALLGFLKQGFDYAKKELKKEKLSFLDMFSGSGIVSRFAKAH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
+S II NDLE YS +INSCYL N + K+ L +++S+ L G ISE YAPKD
Sbjct: 62 SSFIIANDLELYSKIINSCYLANLNQNELKILKTLHQKLLSTPLQN---GFISELYAPKD 118
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
+ I+K ERVFYTR+NAL +D+ R I+K + NL+ FF APL+ EAS+H NTSGVFKG
Sbjct: 119 EANIQKNERVFYTRENALYLDSLRQAIEKEI-PTNLRYFFLAPLLYEASVHANTSGVFKG 177
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYKDKN GVG FG G+NAL+RI GK+ LK PVFSNF+ E E+ KDA LS+E++ +D+
Sbjct: 178 FYKDKN-GVGKFGGVGENALSRIRGKMSLKMPVFSNFHCEFEVLQKDANALSRELEKLDL 236
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
AY DPPYNQHPYGSNYFMLNL+ + +S +SGI + WNRSV+NK A ++ E+I
Sbjct: 237 AYFDPPYNQHPYGSNYFMLNLLAAYKKPTELSKISGIPKDWNRSVYNKAKEAEDALFELI 296
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
A ++SYN EGF+ E+ LQK G+ +E YN FR SRNL R IH+ E L
Sbjct: 297 FQTPAKIILLSYNCEGFVKKEKFEKRLQKLGKCFILEQNYNAFRASRNLKNRPIHIKEQL 356
Query: 366 FVLKK 370
+++KK
Sbjct: 357 YIVKK 361
>gi|86149729|ref|ZP_01067959.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|85839997|gb|EAQ57256.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni CF93-6]
Length = 363
Score = 335 bits (858), Expect = 3e-90, Method: Composition-based stats.
Identities = 189/366 (51%), Positives = 248/366 (67%), Gaps = 6/366 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ + + K+ K L K+K DIFSGSG+V+R K +
Sbjct: 2 KENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSFCDIFSGSGVVSRFAKAH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKE-EYPKKLCNELRDEIISSSLNKKIPGIISENYAPK 124
++ I+ NDLE+YS +IN CYL NK+ + + + ++ I + K G ISE YAPK
Sbjct: 62 SNYILANDLEDYSKLINECYLANKDKDLLQNIKKHYKNLIQNLDFQK---GFISELYAPK 118
Query: 125 DDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFK 184
DD+ I+K ERVFYT KNAL +DT R I+ + +E L+ FF APLI EAS+H NTSGVFK
Sbjct: 119 DDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKE-LRHFFIAPLIYEASVHSNTSGVFK 177
Query: 185 GFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVD 244
GFYK K+ G+G FG G+NAL RI G++ELK P+FSNF+ E E+ KDA +L+KE+ D
Sbjct: 178 GFYKGKD-GIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEFEVMQKDASMLAKELDFFD 236
Query: 245 IAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEI 304
+ Y+DPPYNQHPY SNYFMLNLI + IS +SGI + WNRS FNKP A ++ E+
Sbjct: 237 VVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPKDWNRSTFNKPKFAQDALFEL 296
Query: 305 ISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEY 364
I+ L A ++SYN EGF+ E L G+ + +E KYNTFR SRNL RNIH+ E
Sbjct: 297 INDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILEQKYNTFRASRNLKNRNIHLHEQ 356
Query: 365 LFVLKK 370
L++L K
Sbjct: 357 LYILVK 362
>gi|153952442|ref|YP_001397452.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. doylei 269.97]
gi|152939888|gb|ABS44629.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. doylei 269.97]
Length = 363
Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats.
Identities = 189/365 (51%), Positives = 249/365 (68%), Gaps = 4/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ + + K+ K L K+K DIFSGSG+V+R K +
Sbjct: 2 KENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSFCDIFSGSGVVSRFAKAH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
++ I+ NDLE+YS +IN CYL NK++ + + +I + +K G ISE YAPKD
Sbjct: 62 SNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQNLDFEK--GFISELYAPKD 119
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
D+ I+K ERVFYT KNAL +DT R I+ + +E L+ FF APLI EAS+H NTSGVFKG
Sbjct: 120 DDDIKKNERVFYTFKNALYLDTIRQKIENEIPKE-LRHFFIAPLIYEASVHSNTSGVFKG 178
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYK K+ G+G FG G+NAL RI G++ELK P+FSNF+ E E+ KDA +L+KE+ D+
Sbjct: 179 FYKGKD-GIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEFEVMQKDASVLAKELDFFDV 237
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
Y+DPPYNQHPY SNYFMLNLI + IS +SGI + WNRS FNKP A +++ E+I
Sbjct: 238 VYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPKDWNRSTFNKPKFAQEALFELI 297
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ L A ++SYN EGF+ E L G+ + +E KYNTFR SRNL RNIH+ E L
Sbjct: 298 NDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILEQKYNTFRASRNLKNRNIHLQEQL 357
Query: 366 FVLKK 370
++L K
Sbjct: 358 YILVK 362
>gi|118474860|ref|YP_892002.1| DNA modification methylase [Campylobacter fetus subsp. fetus 82-40]
gi|118414086|gb|ABK82506.1| DNA modification methylase [Campylobacter fetus subsp. fetus 82-40]
Length = 362
Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats.
Identities = 193/366 (52%), Positives = 252/366 (68%), Gaps = 8/366 (2%)
Query: 7 ENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYA 66
EN +L Q+ITYLGNKRSL+ IE +K + + + K+K+ ADIFSGSGIVARM + ++
Sbjct: 3 ENPRYLKEQLITYLGNKRSLLGFIEAGIKGVKQDIKKDKVSFADIFSGSGIVARMARAHS 62
Query: 67 SKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIIS--SSLNKKIPGIISENYAPK 124
I NDLE YS VIN CY TN Y +L NE D S + G I+ YAPK
Sbjct: 63 HTIYTNDLELYSKVINECYQTN---YSDEL-NEKLDFYYHKLSDIKDLKRGFITSLYAPK 118
Query: 125 DDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFK 184
D+N I+K +RVF+T KNA++IDT R ID+IV +E L+ FF APL++E S+H NTSGVFK
Sbjct: 119 DENDIKKDDRVFFTLKNAMIIDTLRTAIDEIVPDE-LRVFFLAPLLSEVSVHSNTSGVFK 177
Query: 185 GFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVD 244
GFYK+K G+G FG +GKNAL RI+ + LK+PV SNF + + KDA+ +K+++ VD
Sbjct: 178 GFYKNK-LGIGEFGGNGKNALKRIMSDITLKKPVLSNFKCDSYVAQKDALEFAKDMQEVD 236
Query: 245 IAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEI 304
IAY+DPPYNQHPYGSNYFMLNLI K IS VSGI + WNRS++NK A + E+
Sbjct: 237 IAYLDPPYNQHPYGSNYFMLNLIAKYEKPKDISLVSGIPKQWNRSIYNKKRDACSAFFEL 296
Query: 305 ISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEY 364
I++L + Y +IS+N+EGFI +E L K G ++ E KYN FRGSRNLN R++HV E
Sbjct: 297 INNLKSKYLLISFNNEGFIDKDEFITNLSKIGRVELKEQKYNAFRGSRNLNGRDLHVFEQ 356
Query: 365 LFVLKK 370
L+ +KK
Sbjct: 357 LYWVKK 362
>gi|15791595|ref|NP_281418.1| DNA modification methylase (adenine-specific methyltransferase)
[Campylobacter jejuni subsp. jejuni NCTC 11168]
gi|86153590|ref|ZP_01071793.1| DNA modification methylase [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597214|ref|ZP_01100449.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni 84-25]
gi|148926370|ref|ZP_01810054.1| DNA modification methylase (adenine-specific methyltransferase)
[Campylobacter jejuni subsp. jejuni CG8486]
gi|85842551|gb|EAQ59763.1| DNA modification methylase [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88190275|gb|EAQ94249.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni 84-25]
gi|112359593|emb|CAL34377.1| putative DNA modification methylase (adenine-specific
methyltransferase) [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|145844762|gb|EDK21867.1| DNA modification methylase (adenine-specific methyltransferase)
[Campylobacter jejuni subsp. jejuni CG8486]
Length = 363
Score = 330 bits (846), Expect = 9e-89, Method: Composition-based stats.
Identities = 188/365 (51%), Positives = 246/365 (67%), Gaps = 4/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ + K+ K L K+K DIFSGSG+V+R K +
Sbjct: 2 KENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSFCDIFSGSGVVSRFAKAH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
++ I+ NDLE+YS +IN CYL NK++ + + +I + +K G ISE YAPKD
Sbjct: 62 SNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQNLDFQK--GFISELYAPKD 119
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
D+ I+K ERVFYT KNAL +DT R I+ + +E L+ FF APLI EAS+H NTSGVFKG
Sbjct: 120 DDDIKKNERVFYTFKNALYLDTIRQKIENEIPKE-LRHFFIAPLIYEASVHSNTSGVFKG 178
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYK K+ G+G FG G+NAL RI G++ELK P+FSNF+ E E+ KDA +L+KE+ D+
Sbjct: 179 FYKGKD-GIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEFEVMQKDANMLAKELDFFDV 237
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
Y+DPPYNQHPY SNYFMLNLI + IS +SGI + WNRS FNK A ++ E+I
Sbjct: 238 VYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPKDWNRSTFNKSKFAQDALFELI 297
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ L A ++SYN EGF+ E L G+ + +E KYNTFR SRNL RNIH+ E L
Sbjct: 298 NDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILEQKYNTFRASRNLKNRNIHLHEQL 357
Query: 366 FVLKK 370
++L K
Sbjct: 358 YILVK 362
>gi|86151323|ref|ZP_01069538.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni 260.94]
gi|121613412|ref|YP_999928.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|85841670|gb|EAQ58917.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni 260.94]
gi|87250498|gb|EAQ73456.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni subsp. jejuni 81-176]
Length = 363
Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats.
Identities = 188/365 (51%), Positives = 246/365 (67%), Gaps = 4/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ + K+ K L K+K DIFSGSG+V+R K +
Sbjct: 2 KENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSFCDIFSGSGVVSRFAKAH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
++ I+ NDLE+YS +IN CYL NK++ + + +I + +K G ISE YAPKD
Sbjct: 62 SNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQNLDFQK--GFISELYAPKD 119
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
D+ I+K ERVFYT KNAL +DT R I+ + +E L+ FF APLI EAS+H NTSGVFKG
Sbjct: 120 DDDIKKNERVFYTFKNALYLDTIRQKIENEIPKE-LRHFFIAPLIYEASVHSNTSGVFKG 178
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYK K+ G+G FG G+NAL RI G++ELK P+FSNF+ E E+ KDA +L+KE+ D+
Sbjct: 179 FYKGKD-GIGKFGGEGQNALKRIKGEIELKIPIFSNFSCEFEVMQKDANMLAKELDFFDV 237
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
Y+DPPYNQHPY SNYFMLNLI + IS +SGI + WNRS FNK A ++ E+I
Sbjct: 238 VYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPKDWNRSTFNKSKFAQDALFELI 297
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ L A ++SYN EGF+ E L G+ + +E KYNTFR SRNL RNIH+ E L
Sbjct: 298 NDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILEQKYNTFRASRNLKNRNIHLHEQL 357
Query: 366 FVLKK 370
++L K
Sbjct: 358 YILVK 362
>gi|57237212|ref|YP_178224.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni RM1221]
gi|57166016|gb|AAW34795.1| D12 class N6 adenine-specific DNA methyltransferase [Campylobacter
jejuni RM1221]
Length = 363
Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats.
Identities = 182/365 (49%), Positives = 244/365 (66%), Gaps = 4/365 (1%)
Query: 6 EENKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKY 65
+EN FL QIITYLGNKR+L+ + + K+ K L K+K DIFSGSGIV+R K +
Sbjct: 2 KENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSFCDIFSGSGIVSRFAKSH 61
Query: 66 ASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD 125
++ I+ NDLE+YS +IN CYL+N + +K ++++ + K+ G +++ YAPKD
Sbjct: 62 SNYILANDLEDYSRIINECYLSNLNDDLEKDIKYYYEKLLKNLELKE--GFLAKLYAPKD 119
Query: 126 DNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKG 185
D I+ ERVFYT KNA +D+ R I+ + +E LK FF APLI EAS+H NTSGVFKG
Sbjct: 120 DLNIKANERVFYTYKNACYLDSVRAKIENEIPQE-LKHFFIAPLIYEASVHSNTSGVFKG 178
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
FYK K+ G+G FG +NAL RI G++ELK P+FSNF+ E E+ KDA +L+KE+ D+
Sbjct: 179 FYKGKD-GIGKFGGEAQNALKRIKGEIELKIPIFSNFSCEFEVMQKDANMLAKELDFFDV 237
Query: 246 AYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEII 305
Y+DPPYNQHPY SNYFMLNLI + IS +SGI + WNRS FNK A ++ E+I
Sbjct: 238 VYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPKDWNRSTFNKSKFAQDALFELI 297
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ L A ++SYN EGF+ E L G+ + +E KYNTFR SRNL RNIH+ E L
Sbjct: 298 NDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILEQKYNTFRASRNLKNRNIHLHEQL 357
Query: 366 FVLKK 370
++L K
Sbjct: 358 YILVK 362
>gi|50083526|ref|YP_045036.1| putative DNA modification methylase (Adenine-specific
methyltransferase) [Acinetobacter sp. ADP1]
gi|49529502|emb|CAG67214.1| putative DNA modification methylase (Adenine-specific
methyltransferase) [Acinetobacter sp. ADP1]
Length = 431
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 112/381 (29%), Positives = 196/381 (51%), Gaps = 31/381 (8%)
Query: 10 DFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEK--LICADIFSGSGIVARMLKKYAS 67
++L Q++ YLGNKR L+ I E +++ +K+K I AD F+GSG+V+R+ ++
Sbjct: 20 EYLFHQLVPYLGNKRRLLHLILEALEITGTLNSKKKNPPIFADFFAGSGVVSRLARQNGY 79
Query: 68 KIIVNDLENYSYVINSCYLTNKEEYPK-KLCNELRDEIISSSLNKKIPGIISENYAPKDD 126
++I ND E YS+ +N L ++ P K + I + ++ G ++ N P++D
Sbjct: 80 RVIANDWEPYSHALNHAILACVDDAPAFKELGGYQKAIDYLNRLPEVKGWVTHNLCPRND 139
Query: 127 NKIEKG-ERVFYTRKNALLIDTYRNLIDKIVREENLKKF----FFAPLITEASIHVNTSG 181
+ + +R+F+ R+N + ID R I + + APL+ AS NTSG
Sbjct: 140 DIYDPSRDRLFFKRRNGMRIDAIRQQIATWQAQGAINDVEMSALLAPLLYSASFVSNTSG 199
Query: 182 VFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSE----LEIFTKDAVILS 237
VFK F++ +G + AL RI + L F + E++ DA L+
Sbjct: 200 VFKSFHQG-------WGGRTQTALERIESLLWLTPSRFCDVGDSKRPAAEMWCVDAQHLA 252
Query: 238 KEIKN--VDIAYIDPPYNQHPYGSNYFMLN-LILKNRLDVPISP-----VSGITQGWNR- 288
++ + VD+AY+DPPYNQH Y SNY +LN L L +++D+P SP SGI + W +
Sbjct: 253 TQMSSFEVDVAYLDPPYNQHAYSSNYHVLNALTLWDQVDLP-SPDTKGYKSGIDRAWRKE 311
Query: 289 --SVFNKPYLALKSMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYN 346
S +N A + E+++ +++A Y + SY+++G I +++ K G++ +
Sbjct: 312 RPSPYNSSKYAKDAYEKLLETINARYILTSYSTDGNIEPKDLLTANLKRGKVTLLTQDVP 371
Query: 347 TFRGSRNLNKRNIHVSEYLFV 367
+R S+ V E++ +
Sbjct: 372 RYRVSKQRQSERARVLEFIVI 392
>gi|148556136|ref|YP_001263718.1| Site-specific DNA-methyltransferase (adenine-specific)
[Sphingomonas wittichii RW1]
gi|148501326|gb|ABQ69580.1| Site-specific DNA-methyltransferase (adenine-specific)
[Sphingomonas wittichii RW1]
Length = 438
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 116/352 (32%), Positives = 168/352 (47%), Gaps = 26/352 (7%)
Query: 15 QIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDL 74
Q+I Y+GNKR L+ I ++ S + + D+F+GSG+VAR K ++I ND
Sbjct: 48 QLIPYIGNKRKLLPLIGRAIE-ASGIAPGDGFV--DLFAGSGVVARYAKARGFRVIANDW 104
Query: 75 ENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKG-E 133
E Y+ IN C++ P + I + I G ++ + P DD + E G +
Sbjct: 105 EPYAEQINRCHVGCNAA-PAYRGQSYAEAIARLNALPPIEGWVTGHLCPDDDERYEIGRD 163
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREENLKKF----FFAPLITEASIHVNTSGVFKGFYKD 189
R+FY RKN + ID R I+++ EE L APL+ + NTSGVFKGF+
Sbjct: 164 RLFYMRKNGMRIDAIRAEIERLTVEERLDTAQAACLLAPLLYQCCYTSNTSGVFKGFHAG 223
Query: 190 KNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEI-KNVDIAYI 248
+G S AL RI + L+ +F + E+ DA +E ++ D Y+
Sbjct: 224 -------WGGSNGTALYRIGADLALEPAIFHDNGQPNEVTRIDAQRFGREHGRSYDFVYV 276
Query: 249 DPPYNQHPYGSNYFMLNLIL---KNRLDVPIS---PVSGITQGW---NRSVFNKPYLALK 299
DPPYNQHPYGSNY +LN + K L IS S I W RS +N A +
Sbjct: 277 DPPYNQHPYGSNYHVLNSVALWDKPALSPKISGRGDKSAIRLDWRTERRSPYNSARHAEQ 336
Query: 300 SMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGS 351
+ E+I L A + ISY+++G I EM G + Y +R S
Sbjct: 337 AFRELIDGLPARWIAISYSTDGNIPLIEMARACCDRGAVTPFIQPYKRYRVS 388
>gi|15612196|ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
gi|4155734|gb|AAD06714.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 175/360 (48%), Gaps = 37/360 (10%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + ++ + + C D+F+G+GIV R KK +K+I NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVAGHDLSGAIFC-DLFAGTGIVGRTFKKAVNKVISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P K EL ++I S +L K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNK--EELINKINSVALKK---GFIYSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAMRLKIEELKLSQNIDNHSYYFLLASLLESADKVANTASVYGAFLKRLK- 167
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPY 252
K+A ++ LK F + E++ +D+ L +I DI Y+DPPY
Sbjct: 168 ---------KSAQKELI----LKGAHFDVSLNANEVYQQDSNDLIGKISG-DILYLDPPY 213
Query: 253 NQHPYGSNYFMLNLILKNRLDVPISPVSGITQ--GWNRSVFNKPYLALKSMEEIISSLDA 310
N YG+NY +LN I P +P G T + +S F + L + E +I
Sbjct: 214 NARQYGANYHLLNTIAAY---TPFTP-KGKTDLPSYQKSSFCSRFQILNAFENLIKKARF 269
Query: 311 CYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLFVLKK 370
Y +SYN+EG +S E+ N+L+KYG V Y F+ + +H E L VL K
Sbjct: 270 KYIFLSYNNEGLMSETEIKNILKKYGAYSLVTKTYMRFKADNKRAHKAVHTKECLHVLIK 329
>gi|83855987|ref|ZP_00949516.1| type II DNA modification enzyme (methyltransferase) [Croceibacter
atlanticus HTCC2559]
gi|83849787|gb|EAP87655.1| type II DNA modification enzyme (methyltransferase) [Croceibacter
atlanticus HTCC2559]
Length = 331
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 111/363 (30%), Positives = 175/363 (48%), Gaps = 41/363 (11%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K+SL+ +E+ + + E + C D+F+G+G V K ++I NDLE
Sbjct: 1 MNYIGSKQSLLPFLEKTILNVCGNDISEFVFC-DLFAGTGTVGHYFKLKVKQVISNDLEF 59
Query: 77 YSYVINSCYLTNKEEYPK-KLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERV 135
YS+V+N Y+ N KL +LR K + G I +NYA R+
Sbjct: 60 YSFVLNRNYIGNSRAIDSFKLLEQLRGV-------KGVEGFIFQNYAEGG-----AANRL 107
Query: 136 FYTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKN 191
+++ +N ID R I+ E + F A L+ A NT+ V+ + K
Sbjct: 108 YFSAENGKKIDAIRQQIEAWKTAEKISDDVYFFLLASLLESADKVANTASVYGAYLKKLK 167
Query: 192 TGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPP 251
T S + L ELK F+ N + +F +DA L KEI DI Y+DPP
Sbjct: 168 T-------SAQKTL-------ELKPAEFAETNQDNLVFQQDANSLIKEISG-DILYLDPP 212
Query: 252 YNQHPYGSNYFMLNLILKNRLDVPISPV--SGITQGWNRSVFNKPYLALKSMEEIISSLD 309
YN YG+NY +LN I + P +P +G+ + +N+S ++ ++ EE+I +
Sbjct: 213 YNARQYGANYHLLNTIAHYK---PFTPKGKTGLPE-YNKSDYSSKPKVAEAFEELIKNAG 268
Query: 310 ACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR--NLNKRNIHVSEYLFV 367
Y +SYN+EG + E++ +L++YG KYN F+ + N N + V EYL V
Sbjct: 269 FKYIFLSYNNEGLLPPEQLREILERYGRYDLATTKYNRFKADKTENRNHKASSVVEYLHV 328
Query: 368 LKK 370
L K
Sbjct: 329 LTK 331
>gi|2584890|gb|AAC45817.1| methylase HpyI [Helicobacter pylori]
Length = 329
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 177/360 (49%), Gaps = 37/360 (10%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + ++ + + C D+F+G+GIV R KK +K+I NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVAGHDLSGAIFC-DLFAGTGIVGRAFKKAVNKVISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P + EL DEI S +L K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNQ--EELIDEINSVALKK---GFIYSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK---FFFAPLITEASIHV-NTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ +F P + E++ V NT+ V+ F K
Sbjct: 109 FSETNAQKIDAVRLKIEELKLSQNIDNCAYYFLLPSLLESADKVANTASVYGAFLKRLK- 167
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPY 252
K+A ++ LK F + E++ +D+ L +I DI Y+DPPY
Sbjct: 168 ---------KSAQKELI----LKGAHFDVSLNANEVYQQDSNDLIGKISG-DILYLDPPY 213
Query: 253 NQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEIISSLDA 310
N YG+NY +LN I P +P G T + +S F L + E +I +
Sbjct: 214 NARQYGANYHLLNTIAAY---TPFTP-KGKTGLPSYQKSSFCSRSQILNAFENLIKTARF 269
Query: 311 CYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLFVLKK 370
Y +SYN+EG +S E+ N+L+KYG + Y F+ + H E L VL K
Sbjct: 270 KYIFLSYNNEGLMSETEIKNILKKYGAYSLMTKTYMRFKADNKRTHKAAHTKECLHVLIK 329
>gi|109946919|ref|YP_664147.1| adenine-specific methyltransferase [Helicobacter acinonychis str.
Sheeba]
gi|109714140|emb|CAJ99148.1| adenine-specific methyltransferase [Helicobacter acinonychis str.
Sheeba]
Length = 329
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 111/363 (30%), Positives = 168/363 (46%), Gaps = 43/363 (11%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + + + C D+F+G+GIV KK +KII NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVVGSDLSCTIFC-DLFAGTGIVGHAFKKAVNKIISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P K EL DEI S +L K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIANIQEIPNK--QELIDEINSVALKK---GFIYSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ R +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAMRLKIEELKRSQNIDGHAYYFLLASLLESADKVANTASVYGAFLKH--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSEL-----EIFTKDAVILSKEIKNVDIAY 247
L K KE + + +L E++ +D+ L ++I DI Y
Sbjct: 166 ----------------LKKSAQKELILEGAHFDLSQNANEVYQQDSNDLIEKISG-DILY 208
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISS 307
+DPPYN YG+NY +LN I +P + +S F L + E +I
Sbjct: 209 LDPPYNARQYGANYHLLNTIATYTPFIPKGKTG--LPSYQKSSFCSRNKILNAFENLIKK 266
Query: 308 LDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLFV 367
Y +SYN+EG ++ E+ N+L+KYG Y F+ + H E+L V
Sbjct: 267 ARFKYIFLSYNNEGLMNETEIRNILKKYGAYSLFTKTYMRFKADNTRVHKATHTKEFLHV 326
Query: 368 LKK 370
L K
Sbjct: 327 LIK 329
>gi|12239882|gb|AAG49536.1| CATG-specific methyltransferase [Helicobacter pylori]
Length = 353
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 111/365 (30%), Positives = 173/365 (47%), Gaps = 47/365 (12%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + + + + C D+F+G+GIV R KK +K+I NDLE
Sbjct: 25 MNYIGSKYKLIPFIKENIHAVVGHDLSGAIFC-DLFAGTGIVGRAFKKAVNKVISNDLEY 83
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P + EL D + S +L K G I +Y+ + R +
Sbjct: 84 YSFVLNQNYIGNIQEIPNQ--EELIDRLNSVALKK---GFIYSHYS------LGGSSRQY 132
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 133 FSETNAQKIDAMRLKIEELKLSQNIDNHSYYFLLASLLESADKVANTASVYGAFLKR--- 189
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSEL-----EIFTKDAVILSKEIKNVDIAY 247
L K KE + + +L E++ +D+ L ++I DI Y
Sbjct: 190 ----------------LKKSAQKELILKGAHFDLSLNANEVYQQDSNDLIEKISG-DILY 232
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NY +LN I P +P G T + +S F + L + E +I
Sbjct: 233 LDPPYNARQYGANYHLLNTIAAY---TPFTP-KGKTGLPNYQKSSFCSRFQILNAFENLI 288
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
Y +SYN+EG +S E+ N+L+KYG V Y F+ + +H E L
Sbjct: 289 KKARFKYIFLSYNNEGLMSETEIKNILKKYGAYSLVTKTYMRFKADNKRAHKAVHTKECL 348
Query: 366 FVLKK 370
+L K
Sbjct: 349 HILIK 353
>gi|78776331|ref|YP_392646.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thiomicrospira denitrificans ATCC 33889]
gi|78496871|gb|ABB43411.1| Site-specific DNA-methyltransferase (adenine-specific)
[Thiomicrospira denitrificans ATCC 33889]
Length = 336
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 113/366 (30%), Positives = 188/366 (51%), Gaps = 45/366 (12%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K L +E+E++ +K+ C D+F+G+G+V R+ K++ +I ND+E+
Sbjct: 1 MNYIGSKYKLSAFLEDEIRAAVGGSLSDKVFC-DMFAGTGVVGRIFKQHVKSVISNDIED 59
Query: 77 YSYVINSCYLTN------KEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIE 130
YSYV+N Y+ N E Y K+L L E G I +Y +
Sbjct: 60 YSYVLNKNYIQNYAQLQDNESYIKELNELLLRE----------DGFIYNHYCLGSGSG-- 107
Query: 131 KGERVFYTRKNALLIDTYRNLIDKIVR----EENLKKFFFAPLITEASIHVNTSGVFKGF 186
R +++ +N IDT R I+++ R ++N+ F A LI A NT+ ++ F
Sbjct: 108 ---RQYFSDENGKKIDTIRLKIEELKRSKKIDDNMYYFLLASLIESADKVANTASMYAAF 164
Query: 187 YKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIA 246
K + K R K+ L+ F ++ ++ +D+ L K+IK DI
Sbjct: 165 LK-----------TLKKPAQR---KLVLEPAYFEQSHNGHVVYQEDSNSLIKKIKG-DIL 209
Query: 247 YIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIIS 306
Y+DPPYN YG+NY +LN I VP +GI + +NRS++ K A+KS EE+I
Sbjct: 210 YLDPPYNHRQYGANYHILNTIALYDEFVPKGK-TGI-RVYNRSMYCKKNRAIKSFEELIR 267
Query: 307 SLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVS--EY 364
+ Y +SYN+EG +S +E+ +++ KYG+ ++ F+ S L+K++ S EY
Sbjct: 268 DANFKYIFLSYNNEGIMSRDEVKSIMSKYGKYDLKIKEHKRFKASNALSKKHKTDSTDEY 327
Query: 365 LFVLKK 370
L +L+K
Sbjct: 328 LHILQK 333
>gi|2584892|gb|AAC45818.1| methylase HpyI [Helicobacter pylori]
Length = 329
Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats.
Identities = 110/362 (30%), Positives = 170/362 (46%), Gaps = 47/362 (12%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + ++ + + C D+F+G+GIV R KK +KII NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVAGHDLSGAIFC-DLFAGTGIVGRAFKKAVNKIISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P K EL D + S + K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNK--EELIDRLNSVASKK---GFIYSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAMRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFLKR--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSEL-----EIFTKDAVILSKEIKNVDIAY 247
L K KE + + +L E++ +DA L +I DI Y
Sbjct: 166 ----------------LKKSAQKELILKGAHFDLSLNANEVYQQDASELIGKISG-DILY 208
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NY +LN I P +P G T + +S F L + E++I
Sbjct: 209 LDPPYNARQYGANYHLLNTIAAY---TPFTP-KGKTGLPSYQKSSFCSRSQMLNAFEDLI 264
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
Y +SYN+EG +S E+ N+L+KYG + Y F+ + +H E L
Sbjct: 265 KKARFKYIFLSYNNEGLMSEIEIKNILKKYGVYSLITKTYMRFKADNKRTHKAVHTKECL 324
Query: 366 FV 367
+
Sbjct: 325 HI 326
>gi|2584886|gb|AAC45814.1| methylase HpyI [Helicobacter pylori]
Length = 329
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 111/365 (30%), Positives = 170/365 (46%), Gaps = 47/365 (12%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + + + + C D+F+G+GIV R KK +K+I NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVVGHDLSGAIFC-DLFAGTGIVGRAFKKAVNKVISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P + EL D + S +L K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNQ--EELIDRLNSVALRK---GFIHSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAVRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFLKR--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSEL-----EIFTKDAVILSKEIKNVDIAY 247
L K KE + + +L E++ +DA L +I DI Y
Sbjct: 166 ----------------LKKSAQKELILKGAHFDLSLNANEVYQQDASELIGKISG-DILY 208
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NY +LN I P +P G T + +S F L + E +I
Sbjct: 209 LDPPYNARQYGANYHLLNTIAAY---TPFTP-KGKTGLPSYQKSSFCSRSQILNAFENLI 264
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
Y +SYN+EG +S E+ N+L+KYG + Y F+ + H E L
Sbjct: 265 KKARFKYIFLSYNNEGLMSEIEIKNILKKYGAYSLMTKTYMRFKADNKRAHKAAHTKECL 324
Query: 366 FVLKK 370
+L K
Sbjct: 325 HILIK 329
>gi|15645822|ref|NP_208000.1| ulcer associated adenine specific DNA methyltransferase
[Helicobacter pylori 26695]
gi|2314368|gb|AAD08252.1| ulcer associated adenine specific DNA methyltransferase
[Helicobacter pylori 26695]
Length = 329
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 171/365 (46%), Gaps = 47/365 (12%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + + N I D+F+G+GIV R KK +K+I NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVVGD-NLSGTIFCDLFAGTGIVGRAFKKAVNKVISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P + EL +EI S +L K G I Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNQ--EELINEINSVALKK---GFIYSYYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAMRLKIEELKLSQNIDNCTYYFLLASLLESADKVANTASVYGAFLKR--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSEL-----EIFTKDAVILSKEIKNVDIAY 247
L K KE + + +L E++ +DA L +I DI Y
Sbjct: 166 ----------------LKKSAQKELILKGADFDLSLNANEVYQQDASELIGKISG-DILY 208
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NY +LN I + P +P G T + +S F L + E +I
Sbjct: 209 LDPPYNARQYGANYHLLNTI---AIYTPFAP-KGKTGLPSYQKSSFCSRAKILNAFENLI 264
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
+ Y +SYN+EG +S E+ N+L+KYG + Y F+ + H E L
Sbjct: 265 KTARFKYIFLSYNNEGLMSETEIGNILKKYGTYSLMTKTYMRFKADNKRTHKAAHTKECL 324
Query: 366 FVLKK 370
+L K
Sbjct: 325 HILIK 329
>gi|108563574|ref|YP_627890.1| type II adenine specific DNA methyltransferase [Helicobacter pylori
HPAG1]
gi|107837347|gb|ABF85216.1| type II adenine specific DNA methyltransferase [Helicobacter pylori
HPAG1]
Length = 329
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 111/360 (30%), Positives = 170/360 (47%), Gaps = 37/360 (10%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + + N I D+F+G+GIV R KK +K+I NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVVGD-NLSGAIFCDLFAGTGIVGRAFKKAVNKVISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P + EL D + S +L K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNQ--EELIDRLNSVALKK---GFIHSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAMRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFLKRLK- 167
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPY 252
K+A ++ LK F + E++ +D+ L +I DI Y+DPPY
Sbjct: 168 ---------KSAQKELI----LKGAHFDVSLNANEVYQQDSSELIGKISG-DILYLDPPY 213
Query: 253 NQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEIISSLDA 310
N YG+NY +LN I + P +P G T + +S F L + E +I
Sbjct: 214 NARQYGANYHLLNTI---AIYTPFAP-KGKTGLPSYQKSSFCSRAKILNAFENLIKKSRF 269
Query: 311 CYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLFVLKK 370
Y +SYN+EG +S E+ N+L+KYG + Y F+ + H E L L K
Sbjct: 270 KYIFLSYNNEGLMSETEIGNILKKYGAYSLMTKTYMRFKADNKRAHKAAHTKECLHTLIK 329
>gi|19705240|ref|NP_602735.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713195|gb|AAL94034.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 333
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 112/363 (30%), Positives = 173/363 (47%), Gaps = 40/363 (11%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K SL I++ + ISK N+ K+ AD+F+G+G++ KK K+I ND+++
Sbjct: 1 MNYIGSKLSLKSFIKDTILEISKIDNENKVF-ADLFAGTGVIGSEFKKMGYKVIANDIQH 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YSY++N ++ N +L L +S+ K G I NY + ER +
Sbjct: 60 YSYILNKHFIENNSPINIELLEHL------NSIEGK-EGFIYNNYCIGSGS-----ERNY 107
Query: 137 YTRKNALLIDTYRNLIDKIVR----EENLKKFFFAPLITEASIHVNTSGVFKGFYKD-KN 191
++ N D R ++K+ R +E+ +F A LI H NT+ V+ F K K
Sbjct: 108 FSDFNGKKCDAIRQELEKLYRDKAIDEHQYNYFLASLINSIDKHANTASVYGAFLKSLKK 167
Query: 192 TGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPP 251
+ V F EL+ + N + + + +D IL K+IK DI Y+DPP
Sbjct: 168 SAVKDF---------------ELELLPIIDGNKDGKAYNEDINILIKKIKG-DILYLDPP 211
Query: 252 YNQHPYGSNYFMLNLILKNRLDVP-ISPVSGITQGWN-RSVFNKPYLALKSMEEIISSLD 309
YN Y +NY +L I +R D P I +G+ N +S F + EE+IS D
Sbjct: 212 YNARQYSANYHLLETI--SRYDDPIIKGKTGLRDYSNQKSKFCSKSQVNQVFEELISDAD 269
Query: 310 ACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR--NLNKRNIHVSEYLFV 367
Y +SYN EG +S E + ++ KYG + Y FR + N N + EYL
Sbjct: 270 FKYIFLSYNDEGLMSLETIKEIMGKYGGYQCFTTDYKRFRADKEENRNHKKSSTVEYLHC 329
Query: 368 LKK 370
L K
Sbjct: 330 LIK 332
>gi|124002327|ref|ZP_01687180.1| modification methylase NlaIII [Microscilla marina ATCC 23134]
gi|123992156|gb|EAY31524.1| modification methylase NlaIII [Microscilla marina ATCC 23134]
Length = 335
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 171/366 (46%), Gaps = 44/366 (12%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K L IE+ ++ + L+ LI A++F G+GI++R LK ++IVNDLE
Sbjct: 1 MNYIGSKYKLAGFIEQSMEEVVGSLHG--LIMAELFGGTGIISRKLKTRLKQLIVNDLEP 58
Query: 77 YSYVINSCYLTNKE--EYPKKLCNELRDEIISSSLNKKIP---GIISENYAPKDDNKIEK 131
YSY + Y+ N E KL ELR ++P G+I ++Y +
Sbjct: 59 YSYALLRHYIGNTTHLERQDKLIEELR----------QVPAHEGLIYQHYCEGSGSG--- 105
Query: 132 GERVFYTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFY 187
R++++ +N ID R I+ E + + F A L+ A NT+ V+ F
Sbjct: 106 --RMYFSNENGQRIDGIRTQIEAWKNEGYINEPEYYFLLASLLENADKVANTASVYGAFL 163
Query: 188 KDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIK-NVDIA 246
K S +N L E+ P N +++ DA L K+ DI
Sbjct: 164 KQ-------LKRSAQNPLNLRAAAYEVV-PTQQN-----QVYNADANELIKQPGITGDIL 210
Query: 247 YIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIIS 306
Y+DPPYN YG+NY +LN I+ + P + +NRS++ + + EE+I+
Sbjct: 211 YLDPPYNARQYGANYHLLNTIVLYDVFEPRGKTG--LRDYNRSLYCQSRKVAPAFEELIA 268
Query: 307 SLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR--NLNKRNIHVSEY 364
Y +SYN+EG +S E + ++ +YG I Y F+ + N N + + EY
Sbjct: 269 QARFRYIFVSYNNEGLMSKERVREIMSRYGHYSLKTIDYQRFKADKTENRNHKAVATKEY 328
Query: 365 LFVLKK 370
L +L K
Sbjct: 329 LHILVK 334
>gi|156068056|gb|ABU43763.1| hypothetical protein AR158_C217L [Chlorella virus AR158]
Length = 324
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 114/364 (31%), Positives = 176/364 (48%), Gaps = 58/364 (15%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
I Y+G+K L D I +E ISK ++ AD+F+GS I+ + + I NDLE
Sbjct: 4 IGYIGSKLKLKDWIFDE---ISKRTDETHTKFADLFAGSCIMTHEALERNYECISNDLET 60
Query: 77 YSYVINS---CYLTNKEEYPKKLCNELRDEIIS-SSLNKKIPGIISENYAPKDDNKIEKG 132
YSYVI + C ++K LR I S +L+ PG ++ Y+P+ G
Sbjct: 61 YSYVILNGLRCSFSDK----------LRCIIESLDALDVYTPGFVTMTYSPR-------G 103
Query: 133 ERVFYTRKNALLIDTYRNLI----DKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYK 188
R+++T +NA+ IDT R+ I D I ++E F A L+T A NTS ++ F K
Sbjct: 104 NRMYFTEENAMRIDTIRDHIERMKDSISKDE--YHFLLASLLTSADTVKNTSVIYGAFLK 161
Query: 189 DKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNS-ELEIFTKDAVILSKEIKNVDIAY 247
F + + + P+ + + LE F +DA L+ + DIAY
Sbjct: 162 K-------FKKTASKHMKLM--------PLHTRSTTVRLETFNEDATELTIK---TDIAY 203
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NYF+LN IL P +G+T + +S F S +I
Sbjct: 204 VDPPYNSRQYGANYFVLNQIL-----YPKEIGNGVTGVSEYKKSSFCHKKEVATSFCSMI 258
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
++ A VISY+SE +S EEM ++L ++G + V ++ F+ + V EYL
Sbjct: 259 QNVSARLFVISYSSESLLSKEEMMSLLSRHGSCEVVIRQHKRFKAQSAAEGND--VEEYL 316
Query: 366 FVLK 369
F ++
Sbjct: 317 FFVR 320
>gi|86144093|ref|ZP_01062430.1| Site-specific DNA-methyltransferase (adenine-specific)
[Flavobacterium sp. MED217]
gi|85829355|gb|EAQ47820.1| Site-specific DNA-methyltransferase (adenine-specific)
[Leeuwenhoekiella blandensis MED217]
Length = 334
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 96/360 (26%), Positives = 159/360 (44%), Gaps = 35/360 (9%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K L D + E +K + + +L+ D+F+G+G V R K Y ++I NDLE
Sbjct: 1 MNYIGSKHKLSDWLLENIKAVCGD-DLSQLVFCDLFAGTGAVGRTFKPYVKRVIANDLEF 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YSYV+N Y+ N + E +EI I NY+ R++
Sbjct: 60 YSYVLNRNYIGNNSIFDASALIEELNEIPPRK------DFIFHNYSETGSEN-----RLY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ +N ID R I++ + + + + F A L+ A NT+ V+ + K
Sbjct: 109 FSAENGQKIDAIRAKIEEWLEQSRINEDTYFFLLASLLESADKVANTASVYGAYLKK--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPY 252
S + L + E+ S +N+ + D DI Y+DPPY
Sbjct: 166 ----LKKSAQKTLELVPANFEITSGSHSVYNTNSNVLINDI--------EGDILYLDPPY 213
Query: 253 NQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDACY 312
N YG+NY +LN I K P + + +S F KS EE+I+
Sbjct: 214 NARQYGANYHVLNTIAKKDTFAPKGKTG--LRAYTKSAFCSKLEVEKSFEELIAKARFKT 271
Query: 313 AVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR--NLNKRNIHVSEYLFVLKK 370
+SYN+EG + + ++Q+YG+ V +Y F+ + N N + +EYL +L+K
Sbjct: 272 LFLSYNNEGLMPAATVKEIMQRYGKYDLVTKEYQRFKADKTENRNHKANATTEYLHILEK 331
>gi|126640315|ref|YP_001083299.1| putative DNA modification methylase [Acinetobacter baumannii ATCC
17978]
gi|126386199|gb|ABO10697.1| putative DNA modification methylase [Acinetobacter baumannii ATCC
17978]
Length = 361
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 88/329 (26%), Positives = 159/329 (48%), Gaps = 26/329 (7%)
Query: 58 VARMLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGII 117
++R+ ++ ++I ND E YS+ +N L + K + I + ++ G +
Sbjct: 1 MSRLARQNGYRVIANDWEPYSHALNHAILACVDAPAFKELGGYQKAIDYLNRLPEVKGWV 60
Query: 118 SENYAPKDDNKIEKG-ERVFYTRKNALLIDTYRNLIDKIVREENLKKF----FFAPLITE 172
+ N P++D+ + +R+F+ R+N + ID R I + + APL+
Sbjct: 61 THNLCPRNDDVYDPSRDRLFFKRRNGMRIDAIRQQIATWQAQGAINDVEMSALLAPLLYS 120
Query: 173 ASIHVNTSGVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSE----LEI 228
AS NTSGVFK F++ +G + AL RI + L F E+
Sbjct: 121 ASFVSNTSGVFKSFHQG-------WGGRTQTALERIESLLWLTPSRFCEIGDRKRPAAEM 173
Query: 229 FTKDAVILSKEIK--NVDIAYIDPPYNQHPYGSNYFMLN-LILKNRLDVPISPV----SG 281
+ DA L+ ++ VD+AY+DPPYNQH Y SNY +LN L L +++D+P SG
Sbjct: 174 WCVDAQHLANQMSGFEVDVAYLDPPYNQHAYSSNYHVLNALTLWDQVDLPPPDTKGYKSG 233
Query: 282 ITQGWNR---SVFNKPYLALKSMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGEL 338
I + W + S +N A + E+++S+++A Y + SY+++G I +++ + G++
Sbjct: 234 IDRAWRKERPSPYNSSKHAKDAYEKLLSTINARYILTSYSTDGNIEPKDLLMANLERGKV 293
Query: 339 KTVEIKYNTFRGSRNLNKRNIHVSEYLFV 367
+ +R S+ V E++ +
Sbjct: 294 TLLTQDVPRYRVSKQRQSERARVLEFIVI 322
>gi|2454660|gb|AAC03127.1| DNA adenine methyltransferase [Chlorella virus NY2A]
Length = 324
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 176/364 (48%), Gaps = 58/364 (15%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
I Y+G+K L D I +E ISK ++ AD+F+GS I+ + + I NDLE
Sbjct: 4 IGYIGSKLKLKDWIFDE---ISKRTDETHTKFADLFAGSCIMTHEALERNYECISNDLET 60
Query: 77 YSYVINS---CYLTNKEEYPKKLCNELRDEIIS-SSLNKKIPGIISENYAPKDDNKIEKG 132
YSYVI + C ++K LR I S +L+ G ++ Y+P+ G
Sbjct: 61 YSYVILNGLRCSFSDK----------LRCIIESLDALDTYTSGFVTMTYSPR-------G 103
Query: 133 ERVFYTRKNALLIDTYRNLI----DKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYK 188
R+++T +NA+ IDT R+ I D I ++E F A L+T A NTS ++ F K
Sbjct: 104 NRMYFTEENAMRIDTIRDHIERMKDSISKDE--YHFLLASLLTSADTVKNTSVIYGAFLK 161
Query: 189 DKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNS-ELEIFTKDAVILSKEIKNVDIAY 247
F + + + P+ + + LE F +DA L+ + DIAY
Sbjct: 162 K-------FKKTASKHMKLM--------PLHTRSTTVRLETFNEDATELTIK---TDIAY 203
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NYF+LN IL P +G+T + +S F S +I
Sbjct: 204 VDPPYNSRQYGANYFVLNQIL-----YPKEIGNGVTGVSEYKKSSFCHKKEVATSFCSMI 258
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
++ A +VISY+SE +S EEM ++L ++G + V ++ F+ + V EYL
Sbjct: 259 QNVSARLSVISYSSESLLSKEEMMSLLSRHGSCEVVIRQHKRFKAQSAAEGND--VEEYL 316
Query: 366 FVLK 369
F ++
Sbjct: 317 FFVR 320
>gi|155122767|gb|ABT14635.1| hypothetical protein NY2A_B236L [Paramecium bursaria Chlorella
virus NY2A]
Length = 324
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 175/364 (48%), Gaps = 58/364 (15%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
I Y+G+K L D I +E ISK ++ AD+F+GS I+ + + I NDLE
Sbjct: 4 IGYIGSKLKLKDWIFDE---ISKRTDETHTKFADLFAGSCIMTHEALERNYECISNDLET 60
Query: 77 YSYVINS---CYLTNKEEYPKKLCNELRDEIIS-SSLNKKIPGIISENYAPKDDNKIEKG 132
YSYVI + C ++K LR I S +L+ G ++ Y+P+ G
Sbjct: 61 YSYVILNGLRCSFSDK----------LRCIIESLDALDTYTSGFVTMTYSPR-------G 103
Query: 133 ERVFYTRKNALLIDTYRNLI----DKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYK 188
R+++T +NA+ IDT R+ I D I ++E F A L+T A NTS ++ F K
Sbjct: 104 NRMYFTEENAMRIDTIRDHIERMKDSISKDE--YHFLLASLLTSADTVKNTSVIYGAFLK 161
Query: 189 DKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNS-ELEIFTKDAVILSKEIKNVDIAY 247
F + + + P+ + + LE F +DA L+ + DIAY
Sbjct: 162 K-------FKKTASKHMKLM--------PLHTRSTTVRLETFNEDATELTIK---TDIAY 203
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NYF+LN IL P +G+T + +S F S +I
Sbjct: 204 VDPPYNSRQYGANYFVLNQIL-----YPKEIGNGVTGVSEYKKSSFCHKKEVATSFCSMI 258
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
++ A VISY+SE +S EEM ++L ++G + V ++ F+ + V EYL
Sbjct: 259 QNVSARLFVISYSSESLLSKEEMMSLLSRHGSCEVVIRQHKRFKAQSAAEGND--VEEYL 316
Query: 366 FVLK 369
F ++
Sbjct: 317 FFVR 320
>gi|127469|sp|P24582|MTN3_NEILA Modification methylase NlaIII (Adenine-specific methyltransferase
NlaIII) (M.NlaIII)
gi|45003|emb|CAA38356.1| NlaIII methyltransferase [Neisseria lactamica]
Length = 334
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 102/363 (28%), Positives = 175/363 (48%), Gaps = 40/363 (11%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K L + +E E+ ++ + +K+ C D+F+G+GIV R K ++I ND+E
Sbjct: 1 MNYIGSKLKLSNWLETEISNVAGHSLSDKVFC-DLFAGTGIVGRKFKTNVKQVIANDMEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIP---GIISENYAPKDDNKIEKGE 133
YSYV+N Y+ N + K EL + +++P G+I ++Y + E
Sbjct: 60 YSYVLNRNYIGNCQSILK--AGELLQRL------EQLPPREGLIYQHYCLGSGS-----E 106
Query: 134 RVFYTRKNALLIDTYRNLID--KIVR--EENLKKFFFAPLITEASIHVNTSGVFKGFYKD 189
R +++ +N ID R I+ K R +E+ F A L+ A NT+ V+ F
Sbjct: 107 RQYFSDENGKKIDAVRIQIEEWKNTRYIDEDTYYFLLATLLEGADKVANTASVYGAFL-- 164
Query: 190 KNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYID 249
KN L + L+ +F + +++ DA L K I DI Y+D
Sbjct: 165 ------------KNLKKSALKPLSLEPALFEIGSDGHQVYQADANQLIKNISG-DILYLD 211
Query: 250 PPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLD 309
PPYN YG+NY +LN I D +G+ + ++RS + + E +I D
Sbjct: 212 PPYNARQYGANYHLLNSIALYD-DFTPKGKTGLRE-YSRSKYCSKSDVVPVFEALIRDAD 269
Query: 310 ACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR--NLNKRNIHVSEYLFV 367
Y +SYN+EG +S ++ + +++G+ V+ +Y F+ + N N + EYL +
Sbjct: 270 FQYIFLSYNNEGLMSVGQVREIFERFGKYDLVQTEYRRFKADKTENRNHKANSTFEYLHI 329
Query: 368 LKK 370
L+K
Sbjct: 330 LEK 332
>gi|9631819|ref|NP_048600.1| hypothetical protein PBCV1_A251R [Paramecium bursaria Chlorella
virus 1]
gi|3915758|sp|P31118|MTC2_PBCV1 Modification methylase CviAII (Adenine-specific methyltransferase
CviAII) (M.CviAII)
gi|1181414|gb|AAC96619.1| M.CviAII adenine DNA methyltransferase [Paramecium bursaria
Chlorella virus 1]
gi|2702248|gb|AAB92381.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
1]
Length = 326
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 114/361 (31%), Positives = 172/361 (47%), Gaps = 55/361 (15%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
I Y+G+K L D I EE ISK + AD+F+GS I+ + + I NDLE
Sbjct: 4 IGYIGSKLKLKDWIFEE---ISKRTDDTYTKFADLFAGSCIMTHEALEKKYECISNDLET 60
Query: 77 YSYVINSCYLTNKEEYPKKLCN--ELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGER 134
YSYVI + K + KL N E D++ + + IPG ++ Y+P+ G R
Sbjct: 61 YSYVIMNGL---KCPFSDKLQNIIETLDDLDTKDM--VIPGFVTLTYSPR-------GNR 108
Query: 135 VFYTRKNALLIDTYRNLIDKIVREENLKK--FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
+++T A+ ID R I+++ + + F A L+T A NTS V+ + K
Sbjct: 109 MYFTEDIAMRIDIIRENIERMKERVSTDEYNFLLASLLTSADSVKNTSVVYGAYLKK--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSE-----LEIFTKDAVILSKEIKNVDIAY 247
K LK VF+ ++ LE F +DA L EIK DIAY
Sbjct: 166 ----------------FKKTALKRMVFAPLHTRSTTVTLETFNEDATEL--EIKT-DIAY 206
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEII 305
+DPPYN YG+NYF+LN IL P +G+T + +S F + S +++
Sbjct: 207 VDPPYNSRQYGANYFVLNQIL-----TPKEIGNGVTGLPEYKKSSFCRKQEVAMSFHKML 261
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYL 365
++ A VISY+SE +S +M +L +YG+ + V + F+ ++ V EYL
Sbjct: 262 KNVSARLFVISYSSESLLSKGDMVALLSQYGKCEVVVRNHKRFKA--QISAVGNDVEEYL 319
Query: 366 F 366
F
Sbjct: 320 F 320
>gi|86131139|ref|ZP_01049738.1| Site-specific DNA-methyltransferase (adenine-specific)
[Cellulophaga sp. MED134]
gi|85818550|gb|EAQ39710.1| Site-specific DNA-methyltransferase (adenine-specific) [Dokdonia
donghaensis MED134]
Length = 332
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 96/360 (26%), Positives = 167/360 (46%), Gaps = 35/360 (9%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K L I++ + + + + C D+F+G+G V R+ K +I NDLE
Sbjct: 1 MNYIGSKHRLSSFIQDTIHSVCGQDLGDLVFC-DLFAGTGAVGRVFKSQVKAVIANDLEF 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YSYV+N Y+ N + + N+L + + S L K G I+ Y G R++
Sbjct: 60 YSYVLNRNYIGNYKNFEY---NDLIENLNSLPLQK---GFIAAQYGEGG-----VGNRLY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
+++ NA ID+ R ++K + + F A L+ A NT+ V
Sbjct: 109 FSKHNAQKIDSIRTEVEKWYHNKAISTDVYYFLLASLLESADKIANTASV---------- 158
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPY 252
+G+ K R + + F + ++F +D L +I DI Y+DPPY
Sbjct: 159 ----YGSYLKTIKPRAAKNMVITPATFEITKTAHKVFQEDGNELITKISG-DILYLDPPY 213
Query: 253 NQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDACY 312
N YG+NY +LN I K + P +G+ +N+S + + S E++I + Y
Sbjct: 214 NVRQYGANYHILNTIAKYNIFAPRGK-TGLPI-YNKSAYCSKKTVVSSFEQLIKNAQFKY 271
Query: 313 AVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVS--EYLFVLKK 370
+SY++EG +S + ++++YG Y FR + ++ + S EYL +L+K
Sbjct: 272 IFVSYSNEGLMSPSVIKKVMEQYGRYDVKTTSYKRFRADKTASRHHKASSTIEYLHILEK 331
>gi|57506161|ref|ZP_00372082.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
gi|57015556|gb|EAL52349.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
Length = 351
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 109/376 (28%), Positives = 182/376 (48%), Gaps = 49/376 (13%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ ++GNK L I + ++ + + + +K D+FSGS + + ++ K+ +D+
Sbjct: 1 MRFIGNKEKLAPIIYDFLQKL-ELIKTQKQSFFDVFSGSVSMGKFFRQKGFKVYSSDMLY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRD-----------EIISSSLN--KKIPGIISENYAP 123
+SYV+ YL K KKL E + E + + LN + + G IS +YAP
Sbjct: 60 FSYVLQKAYLEYKSPSFKKLLLEKQYSQNNAFFSTPYEKVLNFLNSLQGLEGFISTHYAP 119
Query: 124 KDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNT 179
N R+++T++NA ID R I++ E ++ + A L+ S+ N
Sbjct: 120 SPINA-----RMYFTQENAQKIDAMRLQIEQWKNENHINESEYFILLATLLESVSLFANV 174
Query: 180 SGVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKE 239
+GV+ F K + R L LK VF S + F D+V L +
Sbjct: 175 AGVYAAFCKSWDK--------------RALKPFALKPIVFLQGISG-KCFCGDSVKLLQG 219
Query: 240 IK-NVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVP-ISPVSGITQ-GWNRSVFNKPYL 296
K ++DI Y+DPPYNQ Y NY +L + R D P I V+G+ + G +S+F
Sbjct: 220 FKESIDILYLDPPYNQRQYAPNYHLLETLA--RYDNPNIKGVAGVREWGEQKSLFCNAKT 277
Query: 297 ALKSMEEIISSLDACYAV--ISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNL 354
AL +E+I+ CY +SYNS+G + + + +L+ +G++ EI Y F+ + +
Sbjct: 278 ALIQLEKIVKL--PCYKTLALSYNSDGIMQKDSIFKLLESFGKVSFYEIPYRRFKSNAKV 335
Query: 355 NKRNIHVSEYLFVLKK 370
K + V EYL+VL+K
Sbjct: 336 RKND--VFEYLWVLEK 349
>gi|1589833|gb|AAC57944.1| DNA adenine methyltransferase [Chlorella virus SC-1A]
Length = 326
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 108/359 (30%), Positives = 163/359 (45%), Gaps = 51/359 (14%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
I Y+G+K L D I EE ISK + AD+F+ S I+ + + I NDLE
Sbjct: 4 IGYIGSKLKLKDWIFEE---ISKRTDDTYTKFADLFAASCIMTHEALEKKYECISNDLET 60
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YSYVI + K + KL N + + + IPG ++ Y+P+ G R +
Sbjct: 61 YSYVIMNGL---KCPFSDKLQNIIETLDDLDTKDVIIPGFVTLRYSPR-------GNRRY 110
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK--FFFAPLITEASIHVNTSGVFKGFYKDKNTGV 194
+T NA+ ID R I+++ + + F A L+T A NTS V+ + K
Sbjct: 111 FTEDNAMKIDIIRENIERMKDRVSADEYNFLLASLLTSADSVKNTSVVYGAYLKK----- 165
Query: 195 GCFGASGKNALTRILGKVELKEPVFSNFNSELEI-----FTKDAVILSKEIKNVDIAYID 249
K LK VF+ ++ F +DA L + D+AY+D
Sbjct: 166 --------------FKKTALKRMVFAPLHTRTTTVTLETFNEDATELGTK---TDVAYVD 208
Query: 250 PPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNRSVFNKPYLALKSMEEIISS 307
PPYN YG+NYF+LN IL P +G T + +S F + S ++ +
Sbjct: 209 PPYNSRQYGANYFVLNQIL-----TPKEIGNGFTGLPEYKKSSFCRKQEVATSFCNMLKN 263
Query: 308 LDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLF 366
+ A VISY+SE +S EEM +L +YG+ + V + F+ ++ V EYLF
Sbjct: 264 VSARLLVISYSSESLLSKEEMVALLSQYGKCEVVVRNHKRFKA--QISAVGNDVEEYLF 320
>gi|32266549|ref|NP_860581.1| hypothetical protein HH1050 [Helicobacter hepaticus ATCC 51449]
gi|32262600|gb|AAP77647.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 337
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 98/362 (27%), Positives = 170/362 (46%), Gaps = 33/362 (9%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKL---ICADIFSGSGIVARMLKKYASKIIVND 73
+ Y+G+K L ++ ++ + +K+ L I D+F+G+ V R+ K +II ND
Sbjct: 1 MNYIGSKFKLSHFLQTSIESTLQKAHKKPLKDSIFCDMFAGTAAVGRLFKTQVKQIISND 60
Query: 74 LENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGE 133
E YS+V+ Y+ N ++ + NEL + ++ G I +YA +
Sbjct: 61 REYYSFVLAQNYIGNHQKLTR--VNELLHILNDTTQTPPQKGKIYTHYALGSGSG----- 113
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKD 189
R +++ +NA ID R+ I + +E ++ F A L+ A NT+ V+ F K
Sbjct: 114 RQYFSDENAQKIDAVRSKIAQWKKERLIEDKEYYFLLASLLESADKVANTASVYGAFLKH 173
Query: 190 -KNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYI 248
K + + F IL E + N N L +F +DA L +IK DI Y+
Sbjct: 174 LKKSALKGF----------ILNPAEFE----CNENEHL-VFNEDANTLITKIKG-DILYL 217
Query: 249 DPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSL 308
DPPYN YG+NY +LN I +P +G+ + + +S + + +E +I +
Sbjct: 218 DPPYNAREYGANYHLLNTIALYDDFIPKGK-TGLRE-YAKSPWCRKAKVADELENLIKNA 275
Query: 309 DACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLFVL 368
+ +SYN EG +S E++ + +KYG+ K+ F+ ++ EYL +L
Sbjct: 276 HFEWIFLSYNDEGLLSLEQIQAIFEKYGKYSFATQKHQRFKADSKRIQKQDCTLEYLHIL 335
Query: 369 KK 370
+K
Sbjct: 336 RK 337
>gi|57242409|ref|ZP_00370347.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
gi|57016694|gb|EAL53477.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
Length = 340
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 107/367 (29%), Positives = 169/367 (46%), Gaps = 40/367 (10%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+GNK L++ I E + N I D+F+G+ VA+ K K+I ND
Sbjct: 1 MKYIGNKTRLLNFISESMDNFGVCKNG---IFIDLFAGTNSVAKHFKNKGYKVITNDFMT 57
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKK--IPGIISENYAPKDDNKIEKGER 134
YSY+ S L E PK + DE ++ LNK+ + G ENYAP K R
Sbjct: 58 YSYIF-SKVLIELNEMPKFIKLNGLDEALNL-LNKEHYLKGYAYENYAPGG-----KFNR 110
Query: 135 VFYTRKNALLIDTYRNLIDKIVRE----ENLKKFFFAPLITEASIHVNTSGVFKGFYKDK 190
+++ KNA+ ID R I + +RE EN LI A N SG +
Sbjct: 111 QYFSDKNAMRIDFIREKIQQWLRENIIDENEFLVLLVSLIDAADFVANISGTY------- 163
Query: 191 NTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDP 250
GA K + L ++L P +N + + F D+ +E+ DI YIDP
Sbjct: 164 -------GAYLKIWRSMALKDIKLLPPNITNNHLNNKSFQLDSNAFVRELSG-DIVYIDP 215
Query: 251 PYNQHPYGSNY-FMLNLILKNRLDVPISPVSGITQ-GWNRSVFNKPYLALKSMEEIISSL 308
PYN Y N+ F+ +L + ++ + + G+ +S++ + A++ ++IS++
Sbjct: 216 PYNHRQYAPNFHFLESLAVWDKQE--LKGKGGLRDYKHQKSLYCQKGKAMEVFSDLISNI 273
Query: 309 DACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNI-----HVSE 363
+ Y ++SYN+EG I E + L G++K Y FR +N KR E
Sbjct: 274 RSQYIILSYNNEGIIPREHILKTLNAIGQVKEYTTHYRRFRTEKNHEKRQYKQCDDKTIE 333
Query: 364 YLFVLKK 370
+LF++KK
Sbjct: 334 HLFIVKK 340
>gi|86154138|ref|ZP_01072337.1| modification methylase NlaIII [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85842378|gb|EAQ59594.1| modification methylase NlaIII [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 337
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 102/363 (28%), Positives = 175/363 (48%), Gaps = 36/363 (9%)
Query: 17 ITYLGNKRSLIDKIEEEVK--LISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDL 74
+ Y+G+K L+D + E + L +N E+ D+F+G+ V + K K+I ND
Sbjct: 1 MNYIGSKVKLLDFLFESINDILAKSDINLEQCTFIDLFAGTSAVGKKFKNKVEKVISNDK 60
Query: 75 ENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGE- 133
E YS+V+ Y+ N + K EL E+ + + I G I ++Y+ + GE
Sbjct: 61 EFYSFVLAKNYIENTVKI--KRSKELIKELNNIAKINPIKGKIYKHYS------LGGGEN 112
Query: 134 RVFYTRKNALLIDTYRNLI-----DKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYK 188
R +++ NA+ ID+ R I D + E+ F A L+ A NT+ V+ F K
Sbjct: 113 RQYFSDFNAMKIDSMRIKISEWKYDNFINEKECY-FLLASLLESADKVANTASVYGAFLK 171
Query: 189 DKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYI 248
S + L + + E +++ +F ++A L K+IK DI Y+
Sbjct: 172 H-------LKPSAQKELILLPAEFECT-------HTKHLVFNENANDLIKKIKG-DILYL 216
Query: 249 DPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSL 308
DPPYN YG+NY +LN I +P + + +S + K L ++E++I +
Sbjct: 217 DPPYNSREYGANYHVLNSIAMYDDFIPQGKTG--LRAYEKSAWCKKNLVFDALEDLIKNA 274
Query: 309 DACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRG-SRNLNKRNIHVSEYLFV 367
D + +SYN EG +S E++ + +KYG+ Y F+ S+ + ++N + EYL +
Sbjct: 275 DFKFIFLSYNDEGLLSLEQIRQIFEKYGKYDFKSQIYQRFKADSKRICQQNKTI-EYLHI 333
Query: 368 LKK 370
L+K
Sbjct: 334 LEK 336
>gi|57505394|ref|ZP_00371322.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
gi|57016219|gb|EAL53005.1| ulcer associated adenine specific DNA methyltransferase
[Campylobacter upsaliensis RM3195]
Length = 335
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 170/361 (47%), Gaps = 34/361 (9%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKL---ICADIFSGSGIVARMLKKYASKIIVND 73
+ Y+G+K L+ +++ ++ K N + L I D+F+GSG V + K +II ND
Sbjct: 1 MNYIGSKLKLLPFLQQSIESTLKRHNTKPLENSIFCDMFAGSGAVGKAFKPKVKQIISND 60
Query: 74 LENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGE 133
E YS+V+N Y+ N + N+L + + ++ L K G I +YA +
Sbjct: 61 KEYYSFVLNQNYIANHTLINR--ANKLIEMLNNTPLKK---GKIFTHYALGGGSG----- 110
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREE--NLKKFFF--APLITEASIHVNTSGVFKGFYKD 189
R +++ +NA+ ID R I + N +F+F A L+ + NT+ V+ F K
Sbjct: 111 RQYFSDENAMKIDGIRERIAAWQQSGFINEAEFYFLLASLLESSDSVANTACVYGAFLKR 170
Query: 190 KNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYID 249
K + T+ ++ L F + ++F ++A L +I DI Y+D
Sbjct: 171 L-----------KKSATK---ELVLSPATFGLTQNSHQVFNENANDLIAKISG-DILYLD 215
Query: 250 PPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLD 309
PPYN YG+NY +LN I +P + + +S + K ++E ++
Sbjct: 216 PPYNAREYGANYHLLNTIALYDDFIPKGKTG--LRKYKKSAWCKKGDVENALESLLQKAQ 273
Query: 310 ACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKRNIHVSEYLFVLK 369
+ +SYN EG +S E + N+++KYG+ V+ +Y F+ ++ EYL +L
Sbjct: 274 FKWIFLSYNDEGLLSLETIKNLMRKYGKYSCVKQEYQRFKADSMRLQKQSKTIEYLHILH 333
Query: 370 K 370
K
Sbjct: 334 K 334
>gi|1518454|gb|AAB07029.1| M.HpyI
Length = 274
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 41/260 (15%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K LI I+E + + + + C D+F+G+GIV R KK +K+I NDLE
Sbjct: 1 MNYIGSKYKLIPFIKENIHAVVGHDLSGAIFC-DLFAGTGIVGRAFKKAVNKVISNDLEY 59
Query: 77 YSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVF 136
YS+V+N Y+ N +E P + EL D + S +L K G I +Y+ + R +
Sbjct: 60 YSFVLNQNYIGNIQEIPNQ--EELIDRLNSVALRK---GFIHSHYS------LGGSSRQY 108
Query: 137 YTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKDKNT 192
++ NA ID R I+++ +N+ F A L+ A NT+ V+ F K
Sbjct: 109 FSETNAQKIDAVRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFLKR--- 165
Query: 193 GVGCFGASGKNALTRILGKVELKEPVFSNFNSEL-----EIFTKDAVILSKEIKNVDIAY 247
L K KE + + +L E++ +DA L +I DI Y
Sbjct: 166 ----------------LKKSAQKELILKGAHFDLSLNANEVYQQDASELIGKISG-DILY 208
Query: 248 IDPPYNQHPYGSNYFMLNLI 267
+DPPYN YG+NY +LN I
Sbjct: 209 LDPPYNARQYGANYHLLNTI 228
>gi|1480415|emb|CAA65583.1| Sse9I DNA-methyltransferase [Sporosarcina sp.]
Length = 362
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 89/347 (25%), Positives = 159/347 (45%), Gaps = 48/347 (13%)
Query: 16 IITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLE 75
+I YLG+KR+L+ + + + S E + D+F+G+ VA+ K+ +++ ND+
Sbjct: 1 MIKYLGSKRTLVPVLGD---IASASGATEAV---DLFTGTTRVAQEFKRRGLRVLANDVA 54
Query: 76 NYSYVINSCYL-TNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGER 134
YS V+ CY+ TN +E + E+ ++L + PG +E +
Sbjct: 55 TYSEVLAQCYIATNGQEVDRHALEAALAEL--NALPGE-PGYFTETFCEASR-------- 103
Query: 135 VFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGV 194
++ KN +D RN ID + ++ L+ A +T+GV + K
Sbjct: 104 -YFQPKNGARVDAIRNAIDDRYADSWMRPILLTSLMLAADRVDSTTGVQMAYLKQ----- 157
Query: 195 GCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPYNQ 254
+ A N L EL+ P + ++ +DAV L++E+ V + Y+DPPYNQ
Sbjct: 158 --WAARAHNDL-------ELRLPDL--IAGDGDVAREDAVTLAQELPRVQLMYLDPPYNQ 206
Query: 255 HPYGSNYFMLNLILKNRLDVPISPVSGIT-------QGWNRSVFNKPYLALKSMEEIISS 307
H Y +NY + ++ R D P S GI +S +N M ++ +
Sbjct: 207 HRYFTNYHIWETLI--RWDAPES--YGIACKRIDSRDDATKSPYNMKRRMPGEMRRLLMT 262
Query: 308 LDACYAVISYNSEGFISFEEMTNMLQK--YGELKTVEIKYNTFRGSR 352
+ A AV+SYN+E +I E M + L+ Y +++ + Y + G++
Sbjct: 263 IKADLAVVSYNNESWIDPETMMSTLRDAGYEDVRLLAFDYKRYVGAQ 309
>gi|47093526|ref|ZP_00231287.1| DNA methyltransferase [Listeria monocytogenes str. 4b H7858]
gi|47018086|gb|EAL08858.1| ulcer associated adenine specific DNA methyltransferase, putative
[Listeria monocytogenes str. 4b H7858]
Length = 608
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 101/339 (29%), Positives = 161/339 (47%), Gaps = 54/339 (15%)
Query: 50 DIFSGSGIVARMLKKYASKIIVNDLENYSYVI-------NSCYLTNKEEYPKKLCNELRD 102
D F+G+G VA LK + ++ VNDL N+S + N C P K N D
Sbjct: 23 DAFTGTGTVADYLKD-SFRLKVNDLLNWSVIYSRGRILANECTFAKLGFDPIKFFNS-ND 80
Query: 103 EIISSSLNKKIPGIISENYAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREE--- 159
EII G ENY+P ER+++ KNA ID +R +++ +E
Sbjct: 81 EIIK--------GFFYENYSPGGS------ERMYFNEKNAGRIDYFRQTVEEWFNKELIN 126
Query: 160 -NLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGVGCFGASGKNALTRI----LGKVEL 214
N + A LI S NT+GV+ F K ++ AL I + E
Sbjct: 127 YNEYCYLLACLIESVSHVSNTAGVYGAFLKRWDS----------RALKDIKFIEVISYEK 176
Query: 215 KEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDV 274
K +NS+LE +D D+ Y+DPPY Q+ YG+ Y +L ++ D
Sbjct: 177 KNIKADFYNSKLEDIIEDV--------ECDVLYLDPPYTQNQYGTQYHLLETLV--LYDN 226
Query: 275 P-ISPVSGITQ-GWNRSVFNKPYLALKSMEEIISSLDACYAVISYNSEGFISFEEMTNML 332
P ISPV+G + RS ++K + + +++I++ A Y V+SYN +GF+S + +
Sbjct: 227 PSISPVTGSRKTAPMRSDWSKNFKSHILLDKILAKTKAKYVVLSYNVDGFMSKQFIETCF 286
Query: 333 QKYGELKTVEIKYNTFRGSRNL-NKRNIHVSEYLFVLKK 370
++YG+++T + + +++ RN KR EYLF ++K
Sbjct: 287 KRYGKIETYQCEKISYKKYRNFKTKRENEHFEYLFFIEK 325
>gi|149369271|ref|ZP_01889123.1| Site-specific DNA-methyltransferase (adenine-specific)
[unidentified eubacterium SCB49]
gi|149356698|gb|EDM45253.1| Site-specific DNA-methyltransferase (adenine-specific)
[unidentified eubacterium SCB49]
Length = 339
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 172/361 (47%), Gaps = 30/361 (8%)
Query: 17 ITYLGNKRSLIDKIEEEVK-LISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLE 75
+ Y+G+K SL I V+ + L+ + ADIF+G+GIV R I ND+E
Sbjct: 1 MNYIGSKNSLSSFIRSTVQDAVGDALSTKTF--ADIFAGTGIVGRSFAPLVKSTIANDVE 58
Query: 76 NYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERV 135
YSYV+N YL + Y + + D I ++L K G I+++YA +R+
Sbjct: 59 YYSYVLNKNYL---QPYLENDASSYFD--ILNNLAPK-QGFIAQHYAEGG-----TADRL 107
Query: 136 FYTRKNALLIDTYRNLIDKIVREENLKKFFF----APLITEASIHVNTSGVFKGFYKDKN 191
+++++N ID R+ I+ + + A L+ A NT+ V+ + K
Sbjct: 108 YFSKENGGKIDAIRSQIELWKSTSEITDVLYFHLLASLLEAADKVANTASVYGAYLKKIK 167
Query: 192 TGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPP 251
A + ++ + + E + + F +++ +D+ L K+I DI Y+DPP
Sbjct: 168 K-----SAQKPLQVIPMVDRNDQGENLVT-FQKN-KVYHEDSNQLIKKITG-DILYLDPP 219
Query: 252 YNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDAC 311
YN YG+NY +L I K VP +G+ + + +S + + L S ++I+
Sbjct: 220 YNARQYGANYHLLTTIAKYDTFVPKGK-TGLRE-YYKSAYCRKNEVLDSFSQLIADAQFK 277
Query: 312 YAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR--NLNKRNIHVSEYLFVLK 369
+ +SYN+EG +S +E+ ++ +G + KY F+ + N N + EYL +L+
Sbjct: 278 HIFLSYNNEGLMSQKEVEKVMSAHGSYQLETKKYRRFKADKTENRNHKADSTFEYLHILE 337
Query: 370 K 370
K
Sbjct: 338 K 338
>gi|116831737|gb|ABK28845.1| DNA-methyltransferase [Riemerella anatipestifer]
Length = 336
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 94/366 (25%), Positives = 161/366 (43%), Gaps = 44/366 (12%)
Query: 16 IITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLE 75
+I Y+G+KR+L+ ++ V+ + +C D+FSG+ V LK+ ++ ND
Sbjct: 1 MIKYIGSKRALLGQVIGAVRAAQP---QGGTVC-DLFSGTARVGHALKREGFRVWSNDHN 56
Query: 76 NYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERV 135
Y++ + + Y+ E + R E + + L P AP + E
Sbjct: 57 AYAHALATAYVQADREVWAE-----RAEAVLAELRAVAP-------APGWFTRTYCQEAR 104
Query: 136 FYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGVG 195
F+ N ID R I+ + E LK L+ A +T+G+ F K
Sbjct: 105 FFHPDNGARIDAMRERIEVMGLEPELKAVVLVALMEAADRVDSTAGLQMAFMK------- 157
Query: 196 CFGASGKNALTRILGKVELKEP-VFSNFNSELEIFTK-DAVILSKEIKNVDIAYIDPPYN 253
R L +EL+ P + + + T DAV ++ E++ D+ Y+DPPYN
Sbjct: 158 -------QWAPRALKPLELRLPDLLPGVAAGPCVATHGDAVEIAAEVE-ADLVYLDPPYN 209
Query: 254 QHPYGSNYFML-NLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDACY 312
QH Y NY +L+L ++ + + +S FN +++ +I L A
Sbjct: 210 QHSYLGNYHCWESLVLWDKPETYGVARKRVDVKTRKSAFNSRPGIGPALQTVIERLRAPN 269
Query: 313 AVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR----NLNKRNI------HVS 362
++S+N EG++S +E+T ML G ++ VEI + G+R NL + +
Sbjct: 270 LIVSFNDEGYLSRDELTAMLSARGHVQVVEIPRPRYVGARIGIHNLKGQKVGSIGRLRNV 329
Query: 363 EYLFVL 368
EYLFV+
Sbjct: 330 EYLFVV 335
>gi|127484|sp|P29347|MTS1_STRSA Modification methylase StsI (Adenine-specific methyltransferase
StsI) (M.StsI)
gi|217045|dbj|BAA01876.1| StsI methylase [Streptococcus sanguinis]
Length = 653
Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 97/365 (26%), Positives = 180/365 (49%), Gaps = 42/365 (11%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
Y+G+K+ L+ +I+ K++ K+ + + + D+F+G+ +VA K++ + + ND+ +S
Sbjct: 3 YIGSKKLLLPEIK---KMVDKHTDGSEEVFLDLFAGTNVVANYFKQFYT-VYSNDMLFFS 58
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSL--------NKKIPGIISENYAPKDDNKIE 130
YV + N K ++L ISS + N + G Y+P
Sbjct: 59 YVNAKATIENNS---KPSFSKLIQAGISSPMTYLQNLEVNDETIGYYEVAYSPT------ 109
Query: 131 KGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDK 190
GE + + NA +D R+ I+ + L+TE + S + +
Sbjct: 110 -GEANYLSVHNAKKLDIIRSQIESWKNQN---------LLTEHEYYYLLSSLIEALPFIS 159
Query: 191 NTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDP 250
NT G +GA K+ R L +EL++ + + + + F +DA L ++IK DI YID
Sbjct: 160 NT-TGTYGAFLKHWDKRSLNDLELQDFTIFDNSKQNKAFNEDANELVQKIK-ADIVYIDT 217
Query: 251 PYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYL----ALKSMEEIIS 306
PYN Y SNY +L + +N + GIT+ ++ Y AL +M ++I
Sbjct: 218 PYNSRQYASNYHLLENVARNEHPT----LKGITKIFDWKNLKSDYATKGKALVAMRDLIQ 273
Query: 307 SLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLN-KRNIHVSEYL 365
++++ + ++SYN+EG IS E++TN+L+++ V+IK +R ++ N +N + E L
Sbjct: 274 NINSTHIILSYNNEGIISEEDLTNILKEFSVDGIVDIKKIPYRKYQSKNVSKNKEIYELL 333
Query: 366 FVLKK 370
F +++
Sbjct: 334 FYIQR 338
>gi|149923781|ref|ZP_01912173.1| site-specific DNA-methyltransferase [Plesiocystis pacifica SIR-1]
gi|149815352|gb|EDM74894.1| site-specific DNA-methyltransferase [Plesiocystis pacifica SIR-1]
Length = 341
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 80/338 (23%), Positives = 152/338 (44%), Gaps = 29/338 (8%)
Query: 16 IITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLE 75
+I Y+G+KR+L+ + E V+ + + D+FSG+ V LK +++ ND
Sbjct: 1 MIKYIGSKRTLLPVVLEAVRGV-----EGARTVLDLFSGTSRVGHALKGAGYRVLANDHN 55
Query: 76 NYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERV 135
Y+ + CY+ + + R +L + PG ++ + +D++
Sbjct: 56 TYAATLARCYVAADRDRAGLEADATRLLAELDALPGE-PGYFTQTHC--EDSR------- 105
Query: 136 FYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGVG 195
F KN ID R I + + L+ L+ A +T G+ + K
Sbjct: 106 FIQPKNGARIDAIREAIAQKDLDPELEAVLLVSLMEAADRVDSTCGLQMAYLKK------ 159
Query: 196 CFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPYNQH 255
+ A N LT + L + + + + E +A+ ++ + + D+AYIDPPYNQH
Sbjct: 160 -WAARSHNDLT-----LRLPDILPQAAHGKGEAHQLEAIDAARSL-SADVAYIDPPYNQH 212
Query: 256 PYGSNYFML-NLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDACYAV 314
Y NY + +L+L ++ +V + +S +N + E+I+++DA +
Sbjct: 213 SYLGNYHVWESLVLWDKPEVYGVAKKRVDVRSRKSPYNSKRKFHAAFAELIAAVDARVLL 272
Query: 315 ISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSR 352
+S+N+EG+IS EM +L G + + Y + G++
Sbjct: 273 VSFNNEGYISRPEMEALLATRGRVTVLSHDYKRYVGAQ 310
>gi|145641806|ref|ZP_01797381.1| Adenine-specific methyltransferase [Haemophilus influenzae R3021]
gi|145273428|gb|EDK13299.1| Adenine-specific methyltransferase [Haemophilus influenzae 22.4-21]
Length = 360
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 95/361 (26%), Positives = 172/361 (47%), Gaps = 30/361 (8%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ Y+G+K+ L+ I+ ++ K+ N + D+F+G+ V K Y + I NDL
Sbjct: 7 MRYIGSKKLLLQHIK---NMLDKHTNGTEETFLDLFAGTNTVGLFFKPYYT-IYSNDLLY 62
Query: 77 YSYVINSCYLTNKEEYP-----KKL-CNELRDEIISSSLNKKIPGIISENYAPKDDNKIE 130
+S+ IN+ L P K++ N+ + + + G +Y+P
Sbjct: 63 FSH-INAKVLIEGNSRPTFEGLKQIGINDPLSYLADTPITHLPIGYYESSYSPT------ 115
Query: 131 KGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDK 190
G+ ++ T +NA ID + +D ++ + + + L+ + + +
Sbjct: 116 -GDAMYLTVENAKRIDFIHSTLDSWKKDGYVNQQEYLYLL---------NSLIEALPSVS 165
Query: 191 NTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDP 250
N G +GA K+ R L K++L P + N F ++A L K+I +VDIAYID
Sbjct: 166 NI-TGTYGAYLKHWDKRSLNKLDLIFPSVIDNNRPNRSFNENANELIKKI-SVDIAYIDT 223
Query: 251 PYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDA 310
PYN Y SNY +L + ++ +S F+ A +ME++IS++DA
Sbjct: 224 PYNNRQYASNYHLLENVARHTKPTLKGKTKIFDWSQLKSNFSTTKSAKSAMEDLISNIDA 283
Query: 311 CYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRNLNKR-NIHVSEYLFVLK 369
+ ++SYN+EG I +E+ +L+KY K VE++ +R ++ NK + + E LF ++
Sbjct: 284 THILLSYNTEGIIPEKELFELLKKYSINKHVELERIPYRKYKSKNKPLDTELCELLFYIQ 343
Query: 370 K 370
K
Sbjct: 344 K 344
>gi|156867475|gb|EDO60847.1| hypothetical protein CLOLEP_02452 [Clostridium leptum DSM 753]
Length = 664
Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 98/375 (26%), Positives = 175/375 (46%), Gaps = 52/375 (13%)
Query: 17 ITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLEN 76
+ ++G K L+D I+ +++ + + + + DIFSG+G VAR K +II NDL +
Sbjct: 1 MRFIGGKTLLLDHIK---RVLQENTDGTERVFCDIFSGTGTVARYFKP-DYEIISNDLLH 56
Query: 77 YSYVINSCYLTNKEEYPKKLCNEL---------RDEIISSSLNKKIPGIISENYAPKDDN 127
+SY I + N K EL + IS+ I++NY+P
Sbjct: 57 FSYAIQKATVENNSVPQFKKLKELGILDPFSFLEETKISNPEAVPEQFFITQNYSPN--- 113
Query: 128 KIEKGERVFYTRKNALLIDTYRNLIDKI----VREENLKKFFFAPLITEASIHVNTSGVF 183
E R++ + +NA ID RN I+ + EN + A LI N +G +
Sbjct: 114 --EHCSRMYLSPQNAKRIDFIRNTIESWKTAGLLNENEYYYLLAGLIEGVPFVSNITGTY 171
Query: 184 KGFYK--DKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIK 241
+ K DK A ++ R+ E+ + + N + D+ L ++I+
Sbjct: 172 GAYLKRWDKR-------AYKDFSMIRL----EVVDNGYQN-----RCYNMDSNQLIRQIE 215
Query: 242 NVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVP-ISPVSGIT--QGWNRSVFNKPYLAL 298
DI Y+DPPYN Y NY +L + +R D P I+ V+G+ +G +S F
Sbjct: 216 G-DILYLDPPYNSRQYAPNYHLLETV--SRYDRPHITGVTGMRPYEG-QKSAFCVKSQVS 271
Query: 299 KSMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYG---ELKTVEIKYNTFRGSRNLN 355
++ EE+++ + V+SY++EG ++ +E+ +L+K G + +I Y ++ +
Sbjct: 272 QAFEELVARAKFDHLVLSYSTEGLMTAQEIERILKKRGLENSYRRYDIPYKKYKSKIPSD 331
Query: 356 KRNIHVSEYLFVLKK 370
+ N+ EY+F ++K
Sbjct: 332 ESNL--KEYIFYIRK 344
>gi|58865224|emb|CAI52507.1| DNA-methyltransferase [Geobacillus stearothermophilus]
Length = 346
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 110/370 (29%), Positives = 173/370 (46%), Gaps = 47/370 (12%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLK-KYASKIIVNDLENY 77
Y+G+K L+DKI E ++ N E + DIFSG+ VAR K KY K+ ND +
Sbjct: 3 YIGSKVLLLDKINEVIE--ENVDNAESFL--DIFSGTASVARYFKNKY--KVYSNDHLYF 56
Query: 78 SYVINSCYLTNKEEYP-----KKL-----CNELRDEIISSSLNKKIPGIISENYAPKDDN 127
SYV+ + N + YP KK+ + L + I S + + I NY+P
Sbjct: 57 SYVLQKATIEN-DCYPTFDGLKKVDIYDPFSYLNNFPIDSYVFDENNSFIYRNYSPN--- 112
Query: 128 KIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFY 187
E ER+++T +NA ID R I++ +F L+TE +G+ +
Sbjct: 113 --ENCERMYFTNENAKRIDFIRTKIEE---------WFNNNLLTENEYFYLIAGLIESVP 161
Query: 188 KDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAY 247
N G +GA K+ R +EL + + + E F KD+ L +E++ DI Y
Sbjct: 162 FVSNIS-GTYGAYLKHWDKRAFKPLELIKLDVTINHKENRSFNKDSNELIRELEG-DIIY 219
Query: 248 IDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSME----E 303
IDPPYN Y NY +L I R D P + G+T F Y K +E +
Sbjct: 220 IDPPYNSRQYMPNYHILETIA--RYDSP--EIYGVTGLRPYKEFKSKYCNKKQVEKAFAD 275
Query: 304 IISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEI---KYNTFRGSRNLNKRNIH 360
+I + + + V+SY++EG +S E + +L Y +V++ Y ++G + + N+H
Sbjct: 276 LIENANFEHIVVSYSNEGIMSEETILEILCTYAVADSVKVYKYPYRRYKGKLSAKEHNLH 335
Query: 361 VSEYLFVLKK 370
E +F KK
Sbjct: 336 --ELIFYAKK 343
>gi|18148903|dbj|BAB83493.1| modification methylase STSI [Staphylococcus hominis]
Length = 647
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 93/361 (25%), Positives = 173/361 (47%), Gaps = 36/361 (9%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
Y+G+K L+ +I+ LI K+ ++ I D+F+G+ VAR K ++I ND+ +S
Sbjct: 3 YIGSKSLLLKEIDS---LIEKHKLGDEKIFLDLFAGTNTVARYFKS-KYQVITNDILYFS 58
Query: 79 YVINSCYLTNKE--EYPKKLCNE---LRDEIISSSLNKKIPGIISENYAPKDDNKIEKGE 133
Y+ + + N + ++ K N L +EI + N+ S+NY P G+
Sbjct: 59 YINSKATIVNNKVPQFSKLKFNPFEYLNNEINIAFFNES--EYYSQNYTPL-------GK 109
Query: 134 RVFYTRKNALLIDTYRNLIDK---IVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDK 190
++ + +N +D R I+K + E + F+ + EA +V+
Sbjct: 110 AMYLSIENGKRLDFMRYSIEKWKDLNLLEEYEYFYLLSCLIEAIPYVSNI---------- 159
Query: 191 NTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDP 250
G +GA K+ R L + ++ N N + +A L K I + DI YID
Sbjct: 160 ---TGTYGAFLKHWDKRALQDLTIRPLEVINNNHTNIAYNMNANELIKNITS-DICYIDI 215
Query: 251 PYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEIISSLDA 310
PYN Y SNY +L + +N + +S ++ A ++E++I++++A
Sbjct: 216 PYNNRQYASNYHLLENVARNNHPELQGKTKIFDWSYLKSDYSVKKKAYLALEDLIANINA 275
Query: 311 CYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRN-LNKRNIHVSEYLFVLK 369
+ ++SYN EG I++ E+ N+L+KY V+I +R ++ + ++++EY+F +K
Sbjct: 276 SHILLSYNDEGIITYTEILNLLKKYSSDNNVDIVTIPYRKYQSKIPSSKLNLNEYIFYIK 335
Query: 370 K 370
K
Sbjct: 336 K 336
>gi|547932|sp|P35516|MTL1_LACLA Modification methylase LlaI (Adenine-specific methyltransferase
LlaI) (M.LlaI)
gi|639892|gb|AAA65073.1| LlaI methylase [Lactococcus lactis]
Length = 622
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 88/342 (25%), Positives = 162/342 (47%), Gaps = 38/342 (11%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
YLGNK +L++ I++ + K + + AD+F+G+G V K + ++ ND +S
Sbjct: 3 YLGNKTNLLNFIQQ----VIKKHDIQGQTFADLFAGTGSVGDYFKGEYT-VLSNDYMYFS 57
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD-----DNKIEKGE 133
VI+ L N E+ PK D + + Y P D +N + E
Sbjct: 58 KVISEAKLLNSEK-PK------FDSFVKRYGKTPFQWLNEREYTPNDGYFVYNNYTPRAE 110
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKD 189
R++ T +NAL ID R I+++ +E + K + A L+ + NTSG ++ F+K
Sbjct: 111 RMYLTEENALKIDGMRLDIEELFQEGVISKAEYSYLLASLLESVTKVSNTSGTYQAFFK- 169
Query: 190 KNTGVGCFGASGKNALTRI-LGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYI 248
F S AL + + +E+K+ + + + + F K+ L +EI DIAYI
Sbjct: 170 -------FWES--RALKKFTIMPLEMKDSL--SVSKDNRCFNKNTNRLVREISG-DIAYI 217
Query: 249 DPPYNQHPYGSNYFMLNLILKNRLDVP-ISPVSGITQGWNRSVFNKPYLALKSMEEIISS 307
DPPY Y ++Y +L I R D P + +G S ++ A E++
Sbjct: 218 DPPYTITQYTNSYHVLETIA--RYDNPELFGKTGRRVKREFSGYSNKSKAYYEFEDLFRQ 275
Query: 308 LDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFR 349
++ + ++SY+++ + +E+ ++ +++ VE++ N +R
Sbjct: 276 INFTHVLVSYSNQSIVPLDELVDLARRFAVDGIVEVETNEYR 317
>gi|423901|pir||B47029 methylase LlaPI - phage nck202.50 (phi 50) (fragment)
Length = 380
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 163/344 (47%), Gaps = 42/344 (12%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
YLGNK +L++ I++ + K + + AD+F+G+G V K + ++ ND +S
Sbjct: 3 YLGNKTNLLNFIQQ----VIKKHDIQGQTFADLFAGTGSVGDYFKGEYT-VLSNDYMYFS 57
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKD-----DNKIEKGE 133
VI+ L N E+ PK D + + Y P D +N + E
Sbjct: 58 KVISEAKLLNSEK-PK------FDSFVKRYGKTPFQWLNEREYTPNDGYFVYNNYTPRAE 110
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREENLKK----FFFAPLITEASIHVNTSGVFKGFYKD 189
R++ T +NAL ID R I+++ +E + K + A L+ + NTSG ++ F+K
Sbjct: 111 RMYLTEENALKIDGMRLDIEELFQEGVISKAEYSYLLASLLESVTKVSNTSGTYQAFFK- 169
Query: 190 KNTGVGCFGASGKNALTRI-LGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYI 248
F S AL + + +E+K+ + + + + F K+ L +EI DIAYI
Sbjct: 170 -------FWES--RALKKFTIMPLEMKDSL--SVSKDNRCFNKNTNRLVREISG-DIAYI 217
Query: 249 DPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNR---SVFNKPYLALKSMEEII 305
DPPY Y ++Y +L I R D P + G T + S ++ A E++
Sbjct: 218 DPPYTITQYTNSYHVLETIA--RYDNP--ELFGKTARRVKREFSGYSNKSKAYYEFEDLF 273
Query: 306 SSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTFR 349
++ + ++SY+++ + +E+ ++ +++ VE++ N +R
Sbjct: 274 RQINFTHVLVSYSNQSIVPLDELVDLARRFAVDGIVEVETNEYR 317
>gi|149019287|ref|ZP_01834649.1| Adenine-specific methyltransferase [Streptococcus pneumoniae
SP23-BS72]
gi|147931157|gb|EDK82136.1| Adenine-specific methyltransferase [Streptococcus pneumoniae
SP23-BS72]
Length = 716
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 170/353 (48%), Gaps = 51/353 (14%)
Query: 8 NKDFLTTQIITYLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYAS 67
NK+ L YLG+K+ ++D I +K +S+ + + ADIF G+G+VA + +K
Sbjct: 64 NKETLKIGNRRYLGSKQKMLDFI---LKTVSENIGSIDSV-ADIFGGTGVVADLFRKQNK 119
Query: 68 KIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDN 127
K+IVND+ +++ + +N++ K+ + + DE+ + S K G +S+N+
Sbjct: 120 KVIVNDILYSNFISFQTWFSNEDVDIHKV-SHIIDELNNLSPKK---GYVSKNFGG---- 171
Query: 128 KIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFF--FAPLITEASIHVNTSGVFKG 185
+++ +NA ID+ R I+K + N +++F L+ NT G +
Sbjct: 172 -------AYFSEENAGKIDSIREEIEK-YKSGNQREYFMLLTSLLYAMDKVANTVGHYDA 223
Query: 186 FYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDI 245
+ K + ++ L+ P + N N++ EI+ KDA L KEI D+
Sbjct: 224 YRKKMD----------------YCKEIYLRVPEY-NENNQNEIYNKDANKLVKEIY-ADL 265
Query: 246 AYIDPPYNQHPYGSNYFML-NLILKNRLDVPISPVSGITQGWNRSVFNKPYLALKSMEEI 304
YID PYN Y + Y +L N+ + DV + + S + K A ++ E++
Sbjct: 266 VYIDTPYNSRGYENAYHVLENIAEWKKPDVEGVAKKAVNRSEKGSDYTKSK-APQAFEDL 324
Query: 305 ISSLDACYAVISYN---------SEGFISFEEMTNMLQKYGELKTVEIKYNTF 348
I +++A Y ++SYN S IS EE+ +L K G+++ E ++ F
Sbjct: 325 ILNINAKYILVSYNNMNKKGNSRSNAKISNEEIIKILSKRGKVQVFETDFSPF 377
>gi|150421007|gb|EDN13292.1| Adenine-specific DNA methylase [Vibrio cholerae RC385]
Length = 359
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 86/363 (23%), Positives = 151/363 (41%), Gaps = 39/363 (10%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
Y+G+K LIDKI + +E D F G+G VA ++ + +ND + +
Sbjct: 5 YIGSKSRLIDKIASHIGP-----PREGAFFVDAFCGTGAVAEAAAEHGWNVRINDSLHSA 59
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVFYT 138
+ L + ++ K + + K + G + Y+P + ER ++T
Sbjct: 60 VISAGARLISHDQVTFKKLGGYSGAVSKLNAVKPLNGFMWRTYSPASIDTCGI-ERRYFT 118
Query: 139 RKNALLIDTYRNLIDKI----VREENLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGV 194
+NA ID R LI + +E ++ A L + N +G F
Sbjct: 119 EENAARIDAMRCLIVEWKGAGYIDEIEERLLIADLFGALNRVANIAGTF----------- 167
Query: 195 GCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNV--DIAYIDPPY 252
GCF L++ + + K + E + + V ++ NV D+ Y+DPPY
Sbjct: 168 GCF-------LSKWTSQSQNKIAMRCRDLKETGVCVEATVGDVFDVPNVAHDLVYLDPPY 220
Query: 253 NQHPYGSNYFMLNLILKNRLDVPISPVSGIT--QGWNR--SVFNKPYLALKSMEEIISSL 308
+ Y S Y +L + D P+ V G+ + W S F ALK++ ++ L
Sbjct: 221 TKRQYASYYHILETVALG--DEPV--VEGVAGLRPWKALASDFCYKSRALKTLSRLVHGL 276
Query: 309 DACYAVISYNSEGFISFEEMTNMLQKYGELKTVEI-KYNTFRGSRNLNKRNIHVSEYLFV 367
A ++SY+SEG I ++M L K G + +R ++ + V+E+L V
Sbjct: 277 KAQRVLLSYSSEGHICMQDMKAELSKIGSSTMYPLGAIGRYRPNKVASSSASDVNEFLVV 336
Query: 368 LKK 370
+K+
Sbjct: 337 VKR 339
>gi|51892573|ref|YP_075264.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
IAM 14863]
gi|51856262|dbj|BAD40420.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
IAM 14863]
Length = 347
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 150/341 (43%), Gaps = 38/341 (11%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
Y+G+K +L+ IE+ V + E AD F+GS +VA + D ++
Sbjct: 11 YIGSKHNLLPFIEQVVAERAP----EARSLADPFTGSAVVAYHFAARGLTVAAADNLYHN 66
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVFYT 138
Y+ C+L + P ++ + E+I+ LN+ P + Y ++ ++T
Sbjct: 67 YIAARCFLGGR---PGEVRWDRVAELIAH-LNRLPP---EQGYCWREYGG------TYFT 113
Query: 139 RKNALLIDTYRNLIDKIVRE----ENLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGV 194
+NA ID R I + +E E + LI A NT G + F K + G
Sbjct: 114 PENAGRIDAVREQIARWRQERIIGEQEEAVLLTSLIYAADKVANTCGQYDAFLK--HLGA 171
Query: 195 GCFGASGKNALTRILGK-VELKEP--VFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPP 251
+ G + + + K +EL P V S N ++ DA L ++ D+ Y+DPP
Sbjct: 172 KPYAEDGTHLVDATVYKPLELGLPQVVESEAN---RVYCGDADHLIDRME-ADVLYLDPP 227
Query: 252 YNQHPYGSNYFMLNLILKNRLDVPISPVSGITQGWNR----SVFNKPYLALKSMEEIISS 307
YN Y NY +L I R + P + G T+ + R S +++ A + +I
Sbjct: 228 YNSRQYIDNYHVLENIA--RWEKP--RLYGKTRKFARDGLKSAYSRRSTAGAHLTRLIQR 283
Query: 308 LDACYAVISYNSEGFISFEEMTNMLQKYGELKTVEIKYNTF 348
A + ++SYN+EG I E + L++ G ++ E +Y F
Sbjct: 284 ARARHILLSYNNEGIIPDEVIRAALEQRGPVELFERRYAIF 324
>gi|154491492|ref|ZP_02031118.1| hypothetical protein PARMER_01101 [Parabacteroides merdae ATCC
43184]
gi|154088454|gb|EDN87499.1| hypothetical protein PARMER_01101 [Parabacteroides merdae ATCC
43184]
Length = 192
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 223 NSELEIFTKDAVILSKEIKNVDIAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGI 282
N E E++ +DA L K I+ DI Y+DPPYN Y +NY +LN I + P
Sbjct: 44 NGEHEVYNEDANSLIKRIEG-DILYLDPPYNSRQYSANYHLLNTIADYKSFTPKGKTE-- 100
Query: 283 TQGWNRSVFNKPYLALKSMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELKTVE 342
+ +N+S + + +++I + Y V+SYN+EG + + + ++ KYG + +
Sbjct: 101 LREYNKSNYCSKAKVQHTFKDLIRNARFRYIVLSYNNEGIMPMQTIEQIMTKYGNYQMFQ 160
Query: 343 IKYNTFRGSRNLNKRNIH--VSEYL 365
++ F+ + NK ++ +EYL
Sbjct: 161 KEHQRFKADKTENKNHLADTTTEYL 185
>gi|153092519|gb|EDN73574.1| site-specific DNA-methyltransferase (adenine-specific) [Mannheimia
haemolytica PHL213]
Length = 722
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 102/349 (29%), Positives = 149/349 (42%), Gaps = 52/349 (14%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
YLGNK SL D I + V K +N I DIFSG+G V+ K +I NDL +
Sbjct: 83 YLGNKYSLSDFIRKTVDENCKGVN----IIIDIFSGTGAVSNTFKD--KMLITNDLLYSN 136
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGERVFYT 138
Y+ N + E+Y K EL E + + K + EN+A F++
Sbjct: 137 YISNYAWF-GYEKYSDKKIIELIYEY--NQIKTKENNYMRENFAD-----------TFFS 182
Query: 139 RKNALLIDTYRNLIDKIVREENLKKFFFAPLITEASIHVNTSGVFKGFYKDKNTGVGCFG 198
+ I R I+ + + +A LIT + K NT VG +
Sbjct: 183 ADDCSKIGYIREDIETKYKSNEINFKEYAILITS---------LLYAMDKIANT-VGHYD 232
Query: 199 ASGKNA--LTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDPPYNQHP 256
A KN ++ V L E N NS + DA L K IK D+ Y+DPPYN
Sbjct: 233 AYRKNVNFEKTLVLNVLLPE---KNINSNNVCYNLDANELIKSIKG-DLLYLDPPYNSRQ 288
Query: 257 YGSNYFMLNLILKNRLDVPISPVSGITQGWNRSVFNKPYL---ALKSMEEIISSLDACYA 313
Y Y +L + R + P V G+ + +R+ Y A K+ EE+I + DA Y
Sbjct: 289 YCDAYHLLENVA--RWEKP--KVYGVARKMDRTSLKSDYCMIAATKAFEELIENADAKYI 344
Query: 314 VISYN---------SEGFISFEEMTNMLQKYGELKTVEIKYNTFRGSRN 353
++SYN S IS E++ +L K G++ E Y +F ++
Sbjct: 345 LLSYNNMSDKGNDRSNAKISDEDIMKILSKKGKVIVFESDYKSFSTGKS 393
>gi|116217127|ref|ZP_01482941.1| hypothetical protein VchoR_02001116 [Vibrio cholerae RC385]
Length = 330
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 34/332 (10%)
Query: 50 DIFSGSGIVARMLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSL 109
D F G+G VA ++ + +ND + + + L + ++ K + +
Sbjct: 2 DAFCGTGAVAEAAAEHGWNVRINDSLHSAVISAGARLISHDQVTFKKLGGYSGAVSKLNA 61
Query: 110 NKKIPGIISENYAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKI----VREENLKKFF 165
K + G + Y+P + ER ++T +NA ID R LI + +E ++
Sbjct: 62 VKPLNGFMWRTYSPASIDTCGI-ERRYFTEENAARIDAMRCLIVEWKGAGYIDEIEERLL 120
Query: 166 FAPLITEASIHVNTSGVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSE 225
A L + N +G F GCF L++ + + K + E
Sbjct: 121 IADLFGALNRVANIAGTF-----------GCF-------LSKWTSQSQNKIAMRCRDLKE 162
Query: 226 LEIFTKDAVILSKEIKNV--DIAYIDPPYNQHPYGSNYFMLNLILKNRLDVPISPVSGIT 283
+ + V ++ NV D+ Y+DPPY + Y S Y +L + D P+ V G+
Sbjct: 163 TGVCVEATVGDVFDVPNVAHDLVYLDPPYTKRQYASYYHILETVALG--DEPV--VEGVA 218
Query: 284 --QGWNR--SVFNKPYLALKSMEEIISSLDACYAVISYNSEGFISFEEMTNMLQKYGELK 339
+ W S F ALK++ ++ L A ++SY+SEG I ++M L K G
Sbjct: 219 GLRPWKALASDFCYKSRALKTLSRLVHGLKAQRVLLSYSSEGHICMQDMKAELSKIGSST 278
Query: 340 TVEI-KYNTFRGSRNLNKRNIHVSEYLFVLKK 370
+ +R ++ + V+E+L V+K+
Sbjct: 279 MYPLGAIGRYRPNKVASSSASDVNEFLVVVKR 310
>gi|15616566|ref|NP_244872.1| modification methylase [Bacillus halodurans C-125]
gi|10176629|dbj|BAB07723.1| modification methylase [Bacillus halodurans C-125]
Length = 365
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 85/347 (24%), Positives = 152/347 (43%), Gaps = 57/347 (16%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
YLG+K L++ I + V+ ++ ADIF G+G+VA K IIVND+ +
Sbjct: 38 YLGSKYKLLEFICKVVRENCTSVSS----VADIFGGTGVVADRFNKEGKDIIVNDILYSN 93
Query: 79 YVINSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKG-ERVFY 137
Y+ + +N++ K+ +K+ +E+ P +DN + ++
Sbjct: 94 YLAYLTWFSNEKVNITKI--------------EKLIKFFNES-EPTEDNYVSINFGGTYF 138
Query: 138 TRKNALLIDTYRNLIDKIVREENL--KKFFFAPLITEASIHVNTSGVFKGFYKDKNTGVG 195
T NA I R I+K+ E N K LI NT G + + + ++
Sbjct: 139 TEYNARKIGYVREEIEKMSDELNAREKAILITSLIYAMDKVANTVGHYDAYRRKLDS--- 195
Query: 196 CFGASGKNALTRILGKVELKEPVFSN-FNSELEIFTKDAVILSKEIKNVDIAYIDPPYNQ 254
+ +++L P F++ N+ +IF +DA L ++I + D+ YID PYN
Sbjct: 196 -------------IKEIKLLMPEFNDGLNNGNKIFKEDANELVRKI-SADLIYIDTPYNS 241
Query: 255 HPYGSNYFMLNLILKNRLDVPISPVSGITQGW-NRSVFNKPYLALKSME---EIISSLDA 310
YG Y + L+N + + G+ + +RS Y +K+ ++IS++
Sbjct: 242 RQYGDAYHL----LENIAEWEKPDLVGVAKKMIDRSHIKSDYCTMKATSAFADLISNIKG 297
Query: 311 CYAVISYN---------SEGFISFEEMTNMLQKYGELKTVEIKYNTF 348
Y ++SYN S IS EE+ +L+ G ++ E + +
Sbjct: 298 KYILVSYNNMAQKGVGRSNAKISSEEIVEILETRGTVEIFETNFQAY 344
>gi|127451|sp|P14871|MTF1_FLAOK Modification methylase FokI (Adenine-specific methyltransferase
FokI) (M.FokI)
gi|148706|gb|AAA24926.1| methylase (MFokI)
Length = 647
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 31/257 (12%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
++G+K +L+D I+E +I + + + + D+FSG+GIV KK +++ ND +S
Sbjct: 3 FIGSKVNLLDNIQE---VIEENVKDDAHVFMDLFSGTGIVGENFKK-DYQVLSNDSLYFS 58
Query: 79 YV-----INSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGE 133
Y+ I + + N E K E + + ++ NY+P E
Sbjct: 59 YILLKAKIENNSIPNFSELKKIGIKEPLHYLENEEFEISHEFFLTHNYSP-----YMGCE 113
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLIT---EASIHVNTSGVFKGFYKDK 190
R+++T +NA ID R +++ E + + FA L+ EA ++
Sbjct: 114 RMYFTVENASRIDFIRLTLNRWKNESLINELEFAYLLAILIEAVPFISNIS--------- 164
Query: 191 NTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDP 250
G +GA K+ R LGK++L+ N + + + +DA L +++ DI YIDP
Sbjct: 165 ----GTYGAYLKHWDKRALGKLKLRTLDIGNNHYANKTYNEDANSLIEKVYG-DILYIDP 219
Query: 251 PYNQHPYGSNYFMLNLI 267
PYN Y SNY +L I
Sbjct: 220 PYNGRQYISNYHLLETI 236
>gi|148724|gb|AAA24933.1| methyltransferase
Length = 647
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 31/257 (12%)
Query: 19 YLGNKRSLIDKIEEEVKLISKYLNKEKLICADIFSGSGIVARMLKKYASKIIVNDLENYS 78
++G+K +L+D I+E +I + + + + D+FSG+GIV KK +++ ND +S
Sbjct: 3 FIGSKVNLLDNIQE---VIEENVKDDAHVFMDLFSGTGIVGENFKK-DYQVLSNDSLYFS 58
Query: 79 YV-----INSCYLTNKEEYPKKLCNELRDEIISSSLNKKIPGIISENYAPKDDNKIEKGE 133
Y+ I + + N E K E + + ++ NY+P E
Sbjct: 59 YILLKAKIENNSIPNFSELKKIGIKEPLHYLENEEFEISHEFFLTHNYSP-----YMGCE 113
Query: 134 RVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPLIT---EASIHVNTSGVFKGFYKDK 190
R+++T +NA ID R +++ E + + FA L+ EA ++
Sbjct: 114 RMYFTVENASRIDFIRLTLNRWKNESLINELEFAYLLAILIEAVPFISNIS--------- 164
Query: 191 NTGVGCFGASGKNALTRILGKVELKEPVFSNFNSELEIFTKDAVILSKEIKNVDIAYIDP 250
G +GA K+ R LGK++L+ N + + + +DA L +++ DI YIDP
Sbjct: 165 ----GTYGAYLKHWDKRALGKLKLRTLDIVNNHYANKTYNEDANSLIEKVYG-DILYIDP 219
Query: 251 PYNQHPYGSNYFMLNLI 267
PYN Y SNY +L I
Sbjct: 220 PYNGRQYISNYHLLETI 236
>gi|153806193|ref|ZP_01958861.1| hypothetical protein BACCAC_00448 [Bacteroides caccae ATCC 43185]
gi|149130870|gb|EDM22076.1| hypothetical protein BACCAC_00448 [Bacteroides caccae ATCC 43185]
Length = 370
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 84/317 (26%), Positives = 141/317 (44%), Gaps = 49/317 (15%)
Query: 50 DIFSGSGIVARMLKKYASKIIVNDLENYSYVINSCYLTNKEEYPKKLCNELRDEIISSSL 109
D+F+G+ V++ YA +II+ND + + +I + + KL + I
Sbjct: 72 DVFAGTASVSKAAIPYAKRIIMNDFLSSNNIIYQAFFGSGTYDMNKLHS------IIEYY 125
Query: 110 NKKIPGIISENYAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKFFFAPL 169
N P I +NY DN +K F+ KN+ LI R ++K R+ L +A L
Sbjct: 126 NNINPDTIEDNYF--SDNFGDK----FFDYKNSKLIGHIREDVEK--RKVALTHKEYAIL 177
Query: 170 ITEASIHV----NTSGVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSNFNSE 225
+T + NT G F + K KN L L ++L P+
Sbjct: 178 LTSLIYSIDKIANTVGHFDAYIK-------------KNILYHPL-SIQLIRPLDPQC--- 220
Query: 226 LEIFTKDAVILSKEIKNVDIAYIDPPYNQHPYGSNYFML-NLILKNRLDVPISPVSGITQ 284
+EIF +D+ IL++ I D+AYIDPPYN Y Y + NL+ + + + V+ +
Sbjct: 221 VEIFREDSNILAENI-TADVAYIDPPYNSRQYSRFYHIYENLVTWEKPE--LFGVAMKPK 277
Query: 285 GWNRSVFNKPYLALKSMEEIISSLDACYAVISYN---------SEGFISFEEMTNMLQKY 335
N S + A + ++IS L+ Y V+SYN S+ I+ E++ ++L++
Sbjct: 278 AQNMSAYCTSS-APVAFRDLISKLNVKYIVVSYNNTYESKSGSSKNKITLEQIKSILEER 336
Query: 336 GELKTVEIKYNTFRGSR 352
G K + + F +
Sbjct: 337 GTTKIYDCDHRYFNAGK 353
>gi|26553631|ref|NP_757565.1| adenine-specific DNA methyltransferase [Mycoplasma penetrans HF-2]
gi|26453637|dbj|BAC43969.1| adenine-specific DNA methyltransferase [Mycoplasma penetrans HF-2]
Length = 346
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 51/330 (15%)
Query: 50 DIFSGSGIVARMLKKYASKIIVND-LENYSYVINSCYLTNKEEYPKKLCNELRDEIISSS 108
D+F+G+G+V L +ND L + + N+ + K + K L + + +
Sbjct: 41 DVFAGTGVVTNSLLSKFENFYLNDFLYSNEIIYNAFFGMQKFSWEKIL--KFYETYKNLD 98
Query: 109 LNKKIPGIISENYAPKDDNKIEKGERVFYTRKNALLIDTYRNLIDKIVREENLKKF--FF 166
+ +S+NY K F+ K+AL I R ++ N ++F
Sbjct: 99 IKNIKENYVSQNYGGK-----------FFEYKDALQIGYIREDLEINKDSLNKREFDILL 147
Query: 167 APLITEASIHVNTSGVFKGFYKDKNTGVGCFGASGKNALTRILGKVELKEPVFSN--FNS 224
A LI NT G ++ ++K+ N R K +L P+ +N F
Sbjct: 148 ASLIYSFDRSANTVGHYESYFKN-------------NKNLRSTFKFDLINPIINNTIFKK 194
Query: 225 ELEIFTKDAVILSKEIKNVDIAYIDPPYNQHPYGSNYFMLNLILKNR----LDVPISPVS 280
+++IF +D+ IL+ +I + DIAYIDPPY+ Y Y ++ I+K R + P
Sbjct: 195 KIKIFREDSNILAPKI-SADIAYIDPPYSSRQYSRFYHVIENIVKWRKPELFGKALKP-- 251
Query: 281 GITQGWNRSVFNKPYLALKSMEEIISSLDACYAVISYN---------SEGFISFEEMTNM 331
+ N S++ AL++ +I +L Y ++SYN SE + E++ ++
Sbjct: 252 ---KPENMSLYCSSK-ALETFRSLIDNLKCKYILVSYNNTYNSKSKSSENKMKLEDIKSI 307
Query: 332 LQKYGELKTVEIKYNTFRGSRNLNKRNIHV 361
L GE K IK+ F + K ++ +
Sbjct: 308 LLSKGETKEYSIKHQAFNAGKTNLKNHLEI 337
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.317 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,323,765,759
Number of Sequences: 5470121
Number of extensions: 57617845
Number of successful extensions: 161674
Number of sequences better than 1.0e-05: 72
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 161459
Number of HSP's gapped (non-prelim): 78
length of query: 370
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 236
effective length of database: 1,161,091,510
effective search space: 274017596360
effective search space used: 274017596360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)