BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu1095
(206 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379624|ref|NP_721579.1| hypothetical protein SMU.1196c... 361 2e-98
gi|76787941|ref|YP_329852.1| hypothetical protein SAK_1235 ... 141 2e-32
gi|22537307|ref|NP_688158.1| lipoprotein, putative [Strepto... 141 2e-32
gi|76800382|ref|ZP_00782023.1| conserved hypothetical prote... 140 4e-32
gi|139473649|ref|YP_001128365.1| putative lipoprotein [Stre... 137 3e-31
gi|94994542|ref|YP_602640.1| phage protein [Streptococcus p... 137 4e-31
gi|19746281|ref|NP_607417.1| hypothetical protein spyM18_13... 137 5e-31
gi|15675243|ref|NP_269417.1| hypothetical protein SPy_1290 ... 135 1e-30
gi|77409729|ref|ZP_00786389.1| lipoprotein, putative [Strep... 133 5e-30
gi|21910515|ref|NP_664783.1| hypothetical protein SpyM3_097... 132 8e-30
gi|50914374|ref|YP_060346.1| unknown phage protein [Strepto... 132 1e-29
gi|77412739|ref|ZP_00788973.1| lipoprotein, putative [Strep... 105 2e-21
gi|116629235|ref|YP_814407.1| hypothetical protein LGAS_057... 88 3e-16
gi|90592577|ref|YP_529837.1| hypothetical protein LGPKV5a_g... 86 1e-15
>gi|24379624|ref|NP_721579.1| hypothetical protein SMU.1196c [Streptococcus mutans UA159]
gi|24377575|gb|AAN58885.1|AE014956_6 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 206
Score = 361 bits (926), Expect = 2e-98, Method: Composition-based stats.
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MSMKKTKNWLLVFLTVTFCFLMLGCQSKEDKKGGTKPSNEAALTKTENLDFRLSFNKIKV 60
MSMKKTKNWLLVFLTVTFCFLMLGCQSKEDKKGGTKPSNEAALTKTENLDFRLSFNKIKV
Sbjct: 1 MSMKKTKNWLLVFLTVTFCFLMLGCQSKEDKKGGTKPSNEAALTKTENLDFRLSFNKIKV 60
Query: 61 TTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVAR 120
TTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVAR
Sbjct: 61 TTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVAR 120
Query: 121 SISNFSFSREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIK 180
SISNFSFSREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIK
Sbjct: 121 SISNFSFSREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIK 180
Query: 181 TKSSSATIELYFENGLLKNKTQKDLE 206
TKSSSATIELYFENGLLKNKTQKDLE
Sbjct: 181 TKSSSATIELYFENGLLKNKTQKDLE 206
>gi|76787941|ref|YP_329852.1| hypothetical protein SAK_1235 [Streptococcus agalactiae A909]
gi|77414874|ref|ZP_00790984.1| putative lipoprotein [Streptococcus agalactiae 515]
gi|76562998|gb|ABA45582.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|77159075|gb|EAO70276.1| putative lipoprotein [Streptococcus agalactiae 515]
Length = 207
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 89/194 (45%), Positives = 116/194 (59%), Gaps = 6/194 (3%)
Query: 19 CFLMLG---CQSKEDKKGGTKPSN--EAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
C LG C S ++ T SN + K ++ + RL FNK+K+ N+F GGTS+
Sbjct: 14 CLSFLGLTACSSSNTQQTSTSKSNVSQHKNIKADHEELRLKFNKVKLGVKANNFKGGTSL 73
Query: 74 EQLKQWFG-DPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAK 132
+LKQ FG +PN+ AGN+TL Y W D I QL +S++ RSISNF F R+A
Sbjct: 74 AELKQLFGGEPNEKFDTPAGNVTLKGYRWNVDDISITIQLLNDSSIVRSISNFKFIRDAN 133
Query: 133 IGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYF 192
I +DY+ LK G SY KV E LGEPD +SQ++SSDKEE+Q W SGI++ S I L F
Sbjct: 134 ITTKDYNSLKNGMSYNKVKELLGEPDDISQAVSSDKEELQAAWISGIQSSDSDPGINLTF 193
Query: 193 ENGLLKNKTQKDLE 206
EN L NK Q L+
Sbjct: 194 ENDKLTNKQQHGLK 207
>gi|22537307|ref|NP_688158.1| lipoprotein, putative [Streptococcus agalactiae 2603V/R]
gi|25011265|ref|NP_735660.1| hypothetical protein gbs1216 [Streptococcus agalactiae NEM316]
gi|76798884|ref|ZP_00781091.1| lipoprotein, putative [Streptococcus agalactiae 18RS21]
gi|77406670|ref|ZP_00783712.1| lipoprotein, putative [Streptococcus agalactiae H36B]
gi|22534177|gb|AAN00031.1|AE014244_8 lipoprotein, putative [Streptococcus agalactiae 2603V/R]
gi|23095689|emb|CAD46875.1| unknown [Streptococcus agalactiae NEM316]
gi|76585753|gb|EAO62304.1| lipoprotein, putative [Streptococcus agalactiae 18RS21]
gi|77174711|gb|EAO77538.1| lipoprotein, putative [Streptococcus agalactiae H36B]
Length = 207
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 89/194 (45%), Positives = 116/194 (59%), Gaps = 6/194 (3%)
Query: 19 CFLMLG---CQSKEDKKGGTKPSN--EAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
C LG C S ++ T SN + K ++ + RL FNK+K+ N+F GGTS+
Sbjct: 14 CLSFLGLTACSSSNTQQTSTSKSNVSQHKNIKADHEELRLKFNKVKLGVKANNFKGGTSL 73
Query: 74 EQLKQWFG-DPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAK 132
+LKQ FG +PN+ AGN+TL Y W D I QL +S++ RSISNF F R+A
Sbjct: 74 AELKQLFGGEPNEKFDTPAGNVTLKGYRWNVDDISITIQLLNDSSIVRSISNFKFIRDAN 133
Query: 133 IGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYF 192
I +DY+ LK G SY KV E LGEPD +SQ++SSDKEE+Q W SGI++ S I L F
Sbjct: 134 ITTKDYNSLKNGMSYNKVKELLGEPDDISQAVSSDKEELQAAWISGIQSSDSDPGINLTF 193
Query: 193 ENGLLKNKTQKDLE 206
EN L NK Q L+
Sbjct: 194 ENDKLTNKQQHGLK 207
>gi|76800382|ref|ZP_00782023.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
gi|76584418|gb|EAO61382.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
Length = 200
Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats.
Identities = 89/194 (45%), Positives = 116/194 (59%), Gaps = 6/194 (3%)
Query: 19 CFLMLG---CQSKEDKKGGTKPSN--EAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
C LG C S ++ T SN + K ++ + RL FNK+K+ N+F GGTS+
Sbjct: 7 CLSFLGLTACSSSNTQQTXTSKSNVSQHKNIKADHEELRLKFNKVKLGVKANNFKGGTSL 66
Query: 74 EQLKQWFG-DPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAK 132
+LKQ FG +PN+ AGN+TL Y W D I QL +S++ RSISNF F R+A
Sbjct: 67 AELKQLFGGEPNEKFDTPAGNVTLKGYRWNVDDISITIQLLNDSSIVRSISNFKFIRDAN 126
Query: 133 IGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYF 192
I +DY+ LK G SY KV E LGEPD +SQ++SSDKEE+Q W SGI++ S I L F
Sbjct: 127 ITTKDYNSLKNGMSYNKVKELLGEPDDISQAVSSDKEELQAAWISGIQSSDSDPGINLTF 186
Query: 193 ENGLLKNKTQKDLE 206
EN L NK Q L+
Sbjct: 187 ENDKLTNKQQHGLK 200
>gi|139473649|ref|YP_001128365.1| putative lipoprotein [Streptococcus pyogenes str. Manfredo]
gi|134271896|emb|CAM30134.1| putative lipoprotein [Streptococcus pyogenes str. Manfredo]
Length = 206
Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/193 (39%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Query: 18 FCFLMLGCQSKEDKKGGTKPSNEAALT----KTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
F ++ C + +DK+ +PS+ +T + + D R +F KIK+ T + F+GGTS+
Sbjct: 15 FTSFLVACSTTKDKE--PQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSL 72
Query: 74 EQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKI 133
E+L FG+PN+ + + AG +T+D+YTW D + LY+NS++ ++ISNF+F+RE +
Sbjct: 73 EELISLFGEPNQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGL 132
Query: 134 GKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFE 193
+++Y +L+ G SY+ V + L EPD SQ+ SSD + +Q +W SG+KT +S A I L FE
Sbjct: 133 SQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFE 192
Query: 194 NGLLKNKTQKDLE 206
N L +Q LE
Sbjct: 193 NNQLTEMSQVGLE 205
>gi|94994542|ref|YP_602640.1| phage protein [Streptococcus pyogenes MGAS10750]
gi|94548050|gb|ABF38096.1| phage protein [Streptococcus pyogenes MGAS10750]
Length = 206
Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats.
Identities = 76/193 (39%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Query: 18 FCFLMLGCQSKEDKKGGTKPSNEAALT----KTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
F ++ C + +DK+ +PS+ +T + + D R +F KIK+ T + F+GGTS+
Sbjct: 15 FTSFLVACSTTKDKE--PQPSDSENITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSL 72
Query: 74 EQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKI 133
E+L FG+PN+ + + AG +T+D+YTW D + LY+NS++ ++ISNF+F+RE +
Sbjct: 73 EELISLFGEPNQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGL 132
Query: 134 GKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFE 193
+++Y +L+ G SY+ V + L EPD SQ+ SSD + +Q +W SG+KT +S A I L FE
Sbjct: 133 SQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFE 192
Query: 194 NGLLKNKTQKDLE 206
N L +Q LE
Sbjct: 193 NNQLTEMSQVGLE 205
>gi|19746281|ref|NP_607417.1| hypothetical protein spyM18_1310 [Streptococcus pyogenes MGAS8232]
gi|19748469|gb|AAL97916.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 206
Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats.
Identities = 76/193 (39%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Query: 18 FCFLMLGCQSKEDKKGGTKPSNEAALT----KTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
F ++ C + +DKK +PS+ +T + + D R +F KIK+ T + F+GGTS+
Sbjct: 15 FTSFLVACSTTKDKK--PQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSL 72
Query: 74 EQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKI 133
E+L FG+P++ + + AG +T+D+YTW D + LY+NS++ ++ISNF+F+RE +
Sbjct: 73 EELISLFGEPSQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGL 132
Query: 134 GKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFE 193
+++Y +L+ G SY+ V + L EPD SQ+ SSD + +Q +W SG+KT +S A I L FE
Sbjct: 133 SQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFE 192
Query: 194 NGLLKNKTQKDLE 206
N L +Q LE
Sbjct: 193 NNQLTEMSQVGLE 205
>gi|15675243|ref|NP_269417.1| hypothetical protein SPy_1290 [Streptococcus pyogenes M1 GAS]
gi|56808027|ref|ZP_00365829.1| COG2352: Phosphoenolpyruvate carboxylase [Streptococcus pyogenes
M49 591]
gi|71903700|ref|YP_280503.1| hypothetical protein M28_Spy1035 [Streptococcus pyogenes MGAS6180]
gi|71910867|ref|YP_282417.1| hypothetical protein M5005_Spy_1054 [Streptococcus pyogenes phage
5005.1]
gi|94988730|ref|YP_596831.1| phage protein [Streptococcus pyogenes MGAS9429]
gi|94990619|ref|YP_598719.1| phage protein [Streptococcus pyogenes MGAS10270]
gi|94992553|ref|YP_600652.1| phage protein [Streptococcus pyogenes MGAS2096]
gi|13622414|gb|AAK34138.1| hypothetical protein SPy_1290 [Streptococcus pyogenes M1 GAS]
gi|71802795|gb|AAX72148.1| hypothetical protein M28_Spy1035 [Streptococcus pyogenes MGAS6180]
gi|71853649|gb|AAZ51672.1| hypothetical protein M5005_Spy1054 [Streptococcus pyogenes phage
5005.1]
gi|94542238|gb|ABF32287.1| phage protein [Streptococcus pyogenes MGAS9429]
gi|94544127|gb|ABF34175.1| phage protein [Streptococcus pyogenes MGAS10270]
gi|94546061|gb|ABF36108.1| phage protein [Streptococcus pyogenes MGAS2096]
Length = 206
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/193 (38%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Query: 18 FCFLMLGCQSKEDKKGGTKPSNEAALT----KTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
F ++ C + +DK+ +PS+ +T + + D R +F KIK+ T + F+GGTS+
Sbjct: 15 FTSFLVACSTTKDKE--PQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSL 72
Query: 74 EQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKI 133
E+L FG+P++ + + AG +T+D+YTW D + LY+NS++ ++ISNF+F+RE +
Sbjct: 73 EELISLFGEPSQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGL 132
Query: 134 GKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFE 193
+++Y +L+ G SY+ V + L EPD SQ+ SSD + +Q +W SG+KT +S A I L FE
Sbjct: 133 SQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFE 192
Query: 194 NGLLKNKTQKDLE 206
N L +Q LE
Sbjct: 193 NNQLTEMSQVGLE 205
>gi|77409729|ref|ZP_00786389.1| lipoprotein, putative [Streptococcus agalactiae COH1]
gi|77171657|gb|EAO74866.1| lipoprotein, putative [Streptococcus agalactiae COH1]
Length = 155
Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/155 (50%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 53 LSFNKIKVTTDQNHFSGGTSIEQLKQWFG-DPNKSEQRNAGNITLDSYTWVKDGAVINAQ 111
+ FNK+K+ N+F GGTS+ +LKQ FG +PN+ AGN+TL Y W D I Q
Sbjct: 1 MKFNKVKLGVKANNFKGGTSLAELKQLFGGEPNEKFDTPAGNVTLKGYRWNVDDISITIQ 60
Query: 112 LYKNSTVARSISNFSFSREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEM 171
L +S++ RSISNF F R+A I +DY+ LK G SY KV E LGEPD +SQ++SSDKEE+
Sbjct: 61 LLNDSSIVRSISNFKFIRDANITTKDYNSLKNGMSYNKVKELLGEPDDISQAVSSDKEEL 120
Query: 172 QTVWSSGIKTKSSSATIELYFENGLLKNKTQKDLE 206
Q W SGI++ S I L FEN L NK Q L+
Sbjct: 121 QAAWISGIQSSDSDPGINLTFENDKLTNKQQHGLK 155
>gi|21910515|ref|NP_664783.1| hypothetical protein SpyM3_0979 [Streptococcus pyogenes MGAS315]
gi|28895787|ref|NP_802137.1| hypothetical protein SPs0875 [Streptococcus pyogenes SSI-1]
gi|21904715|gb|AAM79586.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811036|dbj|BAC63970.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 206
Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats.
Identities = 74/193 (38%), Positives = 121/193 (62%), Gaps = 6/193 (3%)
Query: 18 FCFLMLGCQSKEDKKGGTKPSNEAALT----KTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
F ++ C + +DK+ +PS+ +T + + D R +F KIK+ T + F+GGTS+
Sbjct: 15 FTSFLVACSTTKDKE--PQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSL 72
Query: 74 EQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKI 133
E+L FG+P++ + + AG +T+D+YTW D + LY+NS++ ++ISNF+F+RE +
Sbjct: 73 EELISLFGEPSQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGL 132
Query: 134 GKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFE 193
+++Y +L+ SY+ V + L EPD SQ+ SSD + +Q +W SG+KT +S A I L FE
Sbjct: 133 SQKEYQQLQKRMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFE 192
Query: 194 NGLLKNKTQKDLE 206
N L +Q LE
Sbjct: 193 NNQLTEMSQVGLE 205
>gi|50914374|ref|YP_060346.1| unknown phage protein [Streptococcus pyogenes MGAS10394]
gi|50903448|gb|AAT87163.1| unknown phage protein [Streptococcus pyogenes MGAS10394]
Length = 206
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/193 (37%), Positives = 121/193 (62%), Gaps = 6/193 (3%)
Query: 18 FCFLMLGCQSKEDKKGGTKPSNEAALT----KTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
F ++ C + +DK+ +PS+ +T + + D R +F KIK+ T + F+GGTS+
Sbjct: 15 FTSFLVACSTTKDKE--PQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSL 72
Query: 74 EQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKI 133
E+L FG+P++ + + AG +T+++YTW D + LY+NS++ ++ISNF+F+RE +
Sbjct: 73 EELISLFGEPSQHDPKTAGEVTINAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGL 132
Query: 134 GKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFE 193
+++Y +L+ G SY+ + L EPD SQ+ SSD + +Q +W SG+KT +S A I L FE
Sbjct: 133 SQKEYQQLQKGMSYEDAKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFE 192
Query: 194 NGLLKNKTQKDLE 206
N L +Q LE
Sbjct: 193 NNQLTEMSQVGLE 205
>gi|77412739|ref|ZP_00788973.1| lipoprotein, putative [Streptococcus agalactiae CJB111]
gi|77161209|gb|EAO72286.1| lipoprotein, putative [Streptococcus agalactiae CJB111]
Length = 172
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 6/152 (3%)
Query: 19 CFLMLG---CQSKEDKKGGTKPSN--EAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSI 73
C LG C S ++ T SN + K ++ + RL FNK+K+ N+F GGTS+
Sbjct: 14 CLSFLGLTACSSSNTQQTSTSKSNVSQHKNIKADHEELRLKFNKVKLGVKANNFKGGTSL 73
Query: 74 EQLKQWFG-DPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAK 132
+LKQ FG +PN+ AGN+TL Y W D I QL +S++ RSISNF F R+A
Sbjct: 74 AELKQLFGGEPNEKFDTPAGNVTLKGYRWNVDDISITIQLLNDSSIVRSISNFKFIRDAN 133
Query: 133 IGKEDYDELKIGESYKKVVEKLGEPDVLSQSM 164
I +DY+ LK SY KV E LGEPD +SQ++
Sbjct: 134 ITTKDYNSLKNXXSYNKVKELLGEPDDISQAV 165
>gi|116629235|ref|YP_814407.1| hypothetical protein LGAS_0573 [Lactobacillus gasseri ATCC 33323]
gi|116629295|ref|YP_814467.1| hypothetical protein LGAS_0635 [Lactobacillus gasseri ATCC 33323]
gi|116094817|gb|ABJ59969.1| hypothetical protein LGAS_0573 [Lactobacillus gasseri ATCC 33323]
gi|116094877|gb|ABJ60029.1| hypothetical protein LGAS_0635 [Lactobacillus gasseri ATCC 33323]
Length = 207
Score = 87.8 bits (216), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 4/197 (2%)
Query: 11 LVFLTVTFCFLMLGCQSKEDKKGGTKPSNEAALTKTENLDFRLSFNKIKVTTDQNHFSGG 70
L+ L+++ C G +S K K NE T ++N + R F++IKV NH GG
Sbjct: 14 LLGLSMSACSSNSGSKSDSAKTSQKKKKNE---TISQNKELREKFDQIKVGELSNHGEGG 70
Query: 71 TSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSF-SR 129
++I+ +++ G N ++ + SY W K + Q + V + I+ F + R
Sbjct: 71 STIQDVEKLLGKANTTDTTTVDSYKTKSYIWNKGAVTVTVQFEPDKAVTKDITGFKWGKR 130
Query: 130 EAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIE 189
+ K+ ++ ++ G +Y +V+K GEPD L++S+ + + +W +GIK K+ A
Sbjct: 131 DEKLDLAAFNSIQDGATYDDIVKKYGEPDSLNESLLLGTKTVTGLWYTGIKGKADGAFAS 190
Query: 190 LYFENGLLKNKTQKDLE 206
L FENG L +KTQ DL+
Sbjct: 191 LTFENGALTSKTQTDLK 207
>gi|90592577|ref|YP_529837.1| hypothetical protein LGPKV5a_gp02 [Lactobacillus gasseri phage
KC5a]
gi|89891906|gb|ABD78779.1| hypothetical protein [Lactobacillus gasseri phage KC5a]
Length = 207
Score = 85.9 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 44 TKTENLDFRLSFNKIKVTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVK 103
T ++N + R F+++KV H GG++I+ +++ G N ++ + SY W K
Sbjct: 44 TISQNKELREKFDQVKVGELSKHGEGGSTIQDVEKLLGKANTTDTTTVESYKTKSYIWNK 103
Query: 104 DGAVINAQLYKNSTVARSISNFSF-SREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQ 162
+ Q + V + I+ F + R+ K+ ++ ++ G SY +V+K GEPD L++
Sbjct: 104 GAVTVTVQFEPDKVVTKDITGFKWGKRDEKLDLAAFNSIQDGASYDDIVKKYGEPDSLNE 163
Query: 163 SMSSDKEEMQTVWSSGIKTKSSSATIELYFENGLLKNKTQKDLE 206
S+ + + +W +GIK K + A L FENG L +KTQ DL+
Sbjct: 164 SLLLGTKTVTALWYTGIKGKGAGANASLTFENGALTSKTQTDLK 207
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.310 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 728,659,307
Number of Sequences: 5470121
Number of extensions: 27860245
Number of successful extensions: 63287
Number of sequences better than 1.0e-05: 20
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 63257
Number of HSP's gapped (non-prelim): 20
length of query: 206
length of database: 1,894,087,724
effective HSP length: 127
effective length of query: 79
effective length of database: 1,199,382,357
effective search space: 94751206203
effective search space used: 94751206203
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)