R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7484652|pir||T14580 SIEP1L protein precursor - beet
>gi|1107526|emb|CAA61158.1| (X87931) SIEP1L protein [Beta vulgaris]
Length = 391
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 391
0 150 300
Plus Strand HSPs:
Score = 284 (100.0 bits), Expect = 4.9e-24, P = 4.9e-24
Identities = 71/174 (40%), Positives = 102/174 (58%), Frame = +2
Query: 5 YKSKNSPKPILYWFSSDWFTIQRGSLENVTFTSDPET-----FELGFDYHVANSSSGGNR 169
YKS NSPKP+LY+ D + + SL+ VTF+ PE +++ F Y + S GGN
Sbjct: 213 YKSPNSPKPLLYFSMLD---LSKSSLKEVTFSCSPENDDNYAYDITFAYQSIDGSIGGNA 269
Query: 170 ILGRPVNNSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLFDRDS----DESECQLPE 337
+ RP NST++ LRLGIDGN+R +TY V W+ T+TLF R+S ++ECQLPE
Sbjct: 270 EIARPKYNSTLSILRLGIDGNLRVFTYSDKVDWAAWEATFTLFARNSPYGLSDTECQLPE 329
Query: 338 RCWEIWVVLKITNVLACPLEKWTT-WLEQQLHCQAC*HPAKLIISTTT--KLKDFEHYMS 508
RC + + + + +ACP K W + C P S T+ KL+ +HY+S
Sbjct: 330 RCGKFGLC-EDSQCVACPTPKGLLGWSNK------CEQPKPSCGSKTSYYKLEGVDHYLS 382
Query: 509 QYLQ 520
L+
Sbjct: 383 SILK 386
>gi|3834308|gb|AAC83024.1| (AC005679) Strong similarity to glycoprotein EP1
gb|L16983 Daucus carota and a member of S locus glycoprotein family
PF|00954. EST gb|AA720110 comes from this gene. [Arabidopsis
thaliana]
Length = 443
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _______________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 443
0 150 300
Plus Strand HSPs:
Score = 179 (63.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 45/131 (34%), Positives = 71/131 (54%), Frame = +2
Query: 5 YKSKNSPKPILYWFSSDWFTIQRGSLENVTFTSDPETFELGFDYHVANSSSGG----NRI 172
Y + +PKPI Y + ++FT + L+++TF + E + + H+ SG +
Sbjct: 206 YTTNKTPKPIGY-YEYEFFT-KIAQLQSMTFQA-VEDADTTWGLHMEGVDSGSQFNVSTF 262
Query: 173 LGRPVNNSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLFDRDSDES--ECQLPERCW 346
L RP +N+T+++LRL DGNIR ++Y W VTYT F D+ + EC++PE C
Sbjct: 263 LSRPKHNATLSFLRLESDGNIRVWSYSTLATSTAWDVTYTAFTNDNTDGNDECRIPEHCL 322
Query: 347 EIWVVLKITNVLACP 391
+ K ACP
Sbjct: 323 GFGLCKK-GQCNACP 336
Score = 63 (22.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 19/49 (38%), Positives = 25/49 (51%), Frame = +1
Query: 343 LGNLGCVEDNQCFGL--SIGKMDYLVGATIALPSLLTSCQANYFHYYEIEG 489
LG G + QC IG + + T +PSL SC FHY++IEG
Sbjct: 322 LG-FGLCKKGQCNACPSDIGLLGW--DETCKIPSL-ASCDPKTFHYFKIEG 368
Score = 40 (14.1 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 6/9 (66%), Positives = 6/9 (66%), Frame = +3
Query: 402 GLLGWSNNC 428
GLLGW C
Sbjct: 340 GLLGWDETC 348
>gi|480297|pir||S36638 glycoprotein EP1 - carrot >gi|349437|gb|AAA33136.1|
(L16983) N-glycosylation sites: (130..138), (244..252), (352..360),
(734..742), (748..756), (865..873) [Daucus carota]
Length = 389
Frame 2 hits (HSPs): _______________________
Annotated Domains: __________
__________________________________________________
Database sequence: | | | | 389
0 150 300
__________________
Annotated Domains:
DOMO DM00234: 82..117
DOMO DM00234: 119..155
__________________
Plus Strand HSPs:
Score = 213 (75.0 bits), Expect = 4.9e-16, P = 4.9e-16
Identities = 67/174 (38%), Positives = 93/174 (53%), Frame = +2
Query: 5 YKSKNSPKPILYWFSSDWFTIQRG-SLENVTFTSDPET-----FELGFDYHVANSSSGGN 166
YK SPKPI Y+ S + + + SL+NVTF + E F L Y +NS GG
Sbjct: 207 YKPTTSPKPIRYYSFSLFTKLNKNESLQNVTFEFENENDQGFAFLLSLKYGTSNSL-GGA 265
Query: 167 RILGRPVNNSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLFDR-------------D 307
IL R N+T+++LRL IDGN++ YTY V G W+VTYTLF + +
Sbjct: 266 SILNRIKYNTTLSFLRLEIDGNVKIYTYNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATE 325
Query: 308 SDESECQLPERCWEIWVVLKITNVLACPLEKWTTWLEQQLHCQAC*HPAKLIISTTTKLK 487
S+ SECQLP++C + + + + CP L C+ P KL ++ K
Sbjct: 326 SESSECQLPKKCGNFGLCEE-SQCVGCPTSSGPV-LAWSKTCE----PPKL---SSCGPK 376
Query: 488 DFEHY 502
DF HY
Sbjct: 377 DF-HY 380
>gi|3834309|gb|AAC83025.1| (AC005679) Strong similarity to glycoprotein EP1
gb|L16983 Daucus carota and a member of S locus glycoprotein family
PF|00954. ESTs gb|F13813, gb|T21052, gb|R30218 and gb|W43262 come
from this gene. [Arabidopsis thaliana]
Length = 441
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 441
0 150 300
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 48/134 (35%), Positives = 73/134 (54%), Frame = +2
Query: 5 YKSKNSPKPILYWFSSDWFTIQRGSLENVTFTS--DPETFELGFDYHVANSSSGGN--RI 172
Y + +PKPI Y F ++FT + +++TF + D +T G +S S N
Sbjct: 206 YTTNKTPKPIAY-FEYEFFT-KITQFQSMTFQAVEDSDT-TWGLVMEGVDSGSKFNVSTF 262
Query: 173 LGRPVNNSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLF-DRDSD-ESECQLPERCW 346
L RP +N+T++++RL DGNIR ++Y W VTYT F + D+D EC++PE C
Sbjct: 263 LSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDVTYTAFTNADTDGNDECRIPEHCL 322
Query: 347 EIWVVLKITNVLACPLEK 400
+ K ACP +K
Sbjct: 323 GFGLCKK-GQCNACPSDK 339
>gi|3834328|gb|AAC83044.1| (AC005679) Strong similarity to glycoprotein EP1
gb|L16983 Daucus carota and a member of S locus glycoprotein family
PF|00954. [Arabidopsis thaliana]
Length = 455
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | || 455
0 150 300 450
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.028, Sum P(2) = 0.028
Identities = 23/63 (36%), Positives = 35/63 (55%), Frame = +2
Query: 155 SGGNRILGRPVN-NSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLFDRDSDESECQL 331
SGG + +N N TI+YLRLG DG+++ ++YF W+ T+ F + +C L
Sbjct: 276 SGGGTLNLNKINYNGTISYLRLGSDGSLKAFSYFPAATYLEWEETFAFFS-NYFVRQCGL 334
Query: 332 PERC 343
P C
Sbjct: 335 PTFC 338
Score = 41 (14.4 bits), Expect = 0.028, Sum P(2) = 0.028
Identities = 11/28 (39%), Positives = 13/28 (46%), Frame = +3
Query: 345 GKFGLC*R*PMFWLVHWKNGLLGWSNNC 428
G +G C R M GLL WS+ C
Sbjct: 339 GDYGYCDR-GMCVGCPTPKGLLAWSDKC 365
>gi|3834312|gb|AAC83028.1| (AC005679) Strong similarity to glycoprotein EP1
gb|L16983 Daucus carota and a member of S locus glycoprotein family
PF|00954. ESTs gb|AA067487, gb|Z35737, gb|Z30815, gb|Z35350,
gb|AA713171, gb|AI100553, gb|Z34248, gb|AA728536, gb|Z30816 and
gb|Z35351>
Length = 455
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | || 455
0 150 300 450
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.053, P = 0.052
Identities = 28/82 (34%), Positives = 43/82 (52%), Frame = +2
Query: 155 SGGNRILGRPVN-NSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLFDRDSDESECQL 331
SGG + +N N TI+YLRLG DG+++ Y+YF W+ +++ F +C L
Sbjct: 276 SGGGTLNLNKINYNGTISYLRLGSDGSLKAYSYFPAATYLKWEESFSFFSTYFVR-QCGL 334
Query: 332 PERCWEIWVVLK-ITNVLACPLEK 400
P C + + + N ACP K
Sbjct: 335 PSFCGDYGYCDRGMCN--ACPTPK 356
>gi|3757746|emb|CAA72808.1| (Y12091) BoNT protein [Clostridium barati]
Length = 49
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | 49
0 20 40
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 4.3, P = 0.99
Identities = 12/32 (37%), Positives = 22/32 (68%), Frame = +2
Query: 182 PVNNSTITYLRLGI--DGNIRFYTYFLDVRDGVW 277
P+NN+TI Y+++ D N ++Y F ++ D +W
Sbjct: 13 PINNTTILYMKMPYYEDSN-KYYKAF-EIMDNIW 44
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.154 0.535
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.143 0.487
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.370 0.167 0.710
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.150 0.488
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.349 0.152 0.529
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.352 0.153 0.607
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 199 199 10. 76 3 12 22 0.093 35
31 0.10 38
+2 0 200 199 10. 76 3 12 22 0.093 35
31 0.10 38
+1 0 200 199 10. 76 3 12 22 0.093 35
31 0.10 38
-1 0 200 200 10. 76 3 12 22 0.094 35
31 0.10 38
-2 0 200 199 10. 76 3 12 22 0.093 35
31 0.10 38
-3 0 199 199 10. 76 3 12 22 0.093 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 7
No. of states in DFA: 598 (59 KB)
Total size of DFA: 249 KB (256 KB)
Time to generate neighborhood: 0.02u 0.01s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 271.55u 1.30s 272.85t Elapsed: 00:01:10
Total cpu time: 271.61u 1.33s 272.94t Elapsed: 00:01:10
Start: Thu Feb 15 01:30:18 2001 End: Thu Feb 15 01:31:28 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000