BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_2054 putative transcriptional regulator
(248 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_269998.1| putative transcriptional regulator [Strept... 504 e-141
ref|YP_283111.1| transcriptional regulator, DeoR family [St... 504 e-141
ref|YP_599426.1| Transcriptional regulator, DeoR family [St... 503 e-141
ref|NP_665558.1| putative transcriptional regulator [Strept... 502 e-140
ref|YP_061066.1| Transcriptional regulator, DeoR family [St... 501 e-140
ref|NP_608073.1| putative transcriptional regulator [Strept... 500 e-140
ref|YP_001129227.1| DeoR family regulatory protein [Strepto... 499 e-140
ref|ZP_00365881.1| COG1349: Transcriptional regulators of s... 499 e-140
ref|NP_720931.1| putative DeoR-type transcriptional regulat... 381 e-104
ref|NP_687360.1| transcriptional regulator, DeoR family [St... 349 1e-94
ref|ZP_00784868.1| transcriptional regulator, DeoR family [... 348 2e-94
ref|ZP_00874716.1| regulatory protein, DeoR [Streptococcus ... 342 9e-93
ref|YP_001198072.1| Transcriptional regulator of sugar meta... 342 2e-92
ref|YP_001200266.1| Transcriptional regulator of sugar meta... 340 5e-92
ref|ZP_01834399.1| transcriptional regulator, DeoR family p... 337 3e-91
ref|YP_001034286.1| Transcriptional repressor of sugar meta... 337 3e-91
ref|YP_815748.1| transcriptional regulator, DeoR family pro... 337 6e-91
ref|ZP_01829730.1| transcriptional regulator, DeoR family p... 337 6e-91
ref|NP_357821.1| DEOR-type transcriptional regulator [Strep... 336 8e-91
ref|ZP_01822470.1| transcriptional regulator, DeoR family p... 336 8e-91
ref|ZP_01826614.1| transcriptional regulator, DeoR family p... 336 9e-91
ref|YP_001451062.1| transcription regulator, DeoR family [S... 335 1e-90
ref|ZP_02716344.1| putative HTH-type transcriptional regula... 335 2e-90
ref|NP_344785.1| transcriptional regulator, DeoR family [St... 331 3e-89
ref|YP_001834974.1| transcriptional regulator, DeoR family ... 330 6e-89
ref|YP_808813.1| Transcriptional regulator of sugar metabol... 271 4e-71
ref|NP_786016.1| transcription regulator [Lactobacillus pla... 270 6e-71
ref|NP_266945.1| transcription regulator [Lactococcus lacti... 269 1e-70
ref|YP_001307842.1| transcriptional regulator, DeoR family ... 261 3e-68
ref|YP_001786590.1| putative HTH-type transcriptional regul... 259 2e-67
ref|ZP_02427521.1| hypothetical protein CLORAM_00908 [Clost... 242 1e-62
ref|ZP_02440142.1| hypothetical protein CLOSS21_02634 [Clos... 241 4e-62
ref|ZP_02948823.1| putative HTH-type transcriptional regula... 236 1e-60
ref|ZP_02419038.1| hypothetical protein ANACAC_01623 [Anaer... 235 2e-60
ref|ZP_02432279.1| hypothetical protein CLOSCI_02524 [Clost... 227 4e-58
ref|ZP_02867223.1| hypothetical protein CLOSPI_01029 [Clost... 224 4e-57
ref|YP_001437672.1| hypothetical protein ESA_01582 [Enterob... 213 7e-54
ref|YP_001033040.1| transcriptional regulator, DeoR family ... 206 9e-52
ref|YP_540565.1| putative DEOR-type transcriptional regulat... 196 1e-48
ref|YP_216686.1| putative regulatory protein, deoR family [... 196 2e-48
ref|NP_455793.1| putative regulatory protein [Salmonella en... 195 2e-48
ref|ZP_02343553.1| hypothetical protein Sentente_04768 [Sal... 195 2e-48
ref|ZP_00832913.1| COG1349: Transcriptional regulators of s... 195 3e-48
ref|YP_408208.1| putative DEOR-type transcriptional regulat... 195 3e-48
ref|ZP_02696760.1| hypothetical protein Saentericaenterica_... 194 4e-48
ref|YP_150445.1| putative regulatory protein [Salmonella en... 194 6e-48
ref|YP_001462584.1| transcriptional regulator, DeoR family ... 194 7e-48
ref|YP_669249.1| putative regulatory protein YciT, DeoR fam... 193 8e-48
ref|NP_287913.1| putative DEOR-type transcriptional regulat... 193 8e-48
ref|NP_415800.1| predicted DNA-binding transcriptional regu... 193 8e-48
ref|YP_001176910.1| transcriptional regulator, DeoR family ... 193 9e-48
ref|NP_707193.1| putative DEOR-type transcriptional regulat... 193 1e-47
ref|ZP_00824253.1| COG1349: Transcriptional regulators of s... 192 1e-47
ref|ZP_02902817.1| transcriptional regulator, DeoR family [... 192 2e-47
ref|YP_001478872.1| transcriptional regulator, DeoR family ... 192 2e-47
ref|NP_753658.1| Hypothetical transcriptional regulator yci... 192 2e-47
ref|ZP_00820635.1| COG1349: Transcriptional regulators of s... 192 2e-47
ref|YP_001570302.1| hypothetical protein SARI_01258 [Salmon... 188 3e-46
ref|ZP_00828068.1| COG1349: Transcriptional regulators of s... 188 4e-46
ref|YP_001452941.1| hypothetical protein CKO_01368 [Citroba... 187 6e-46
ref|ZP_00725878.1| COG1349: Transcriptional regulators of s... 187 6e-46
ref|ZP_00712720.1| COG1349: Transcriptional regulators of s... 187 6e-46
ref|YP_857361.1| putative HTH-type transcriptional regulato... 186 9e-46
ref|ZP_00920948.1| COG1349: Transcriptional regulators of s... 186 1e-45
ref|YP_001334943.1| putative DEOR-type transcriptional regu... 186 2e-45
ref|YP_001006231.1| putative DeoR-family regulatory protein... 183 1e-44
ref|ZP_01984896.1| putative HTH-type transcriptional regula... 177 5e-43
ref|YP_001448701.1| hypothetical protein VIBHAR_06583 [Vibr... 176 1e-42
ref|NP_799813.1| putative regulatory protein [Vibrio paraha... 175 2e-42
ref|ZP_01259433.1| putative regulatory protein [Vibrio algi... 174 6e-42
ref|ZP_01477068.1| hypothetical protein VEx2w_02000272 [Vib... 172 1e-41
ref|ZP_01897206.1| putative regulatory protein [Moritella s... 162 2e-38
ref|NP_348058.1| Transcriptional regulators of sugar metabo... 157 7e-37
ref|ZP_02565395.1| hypothetical protein Senten_06275 [Salmo... 147 9e-34
ref|ZP_02081395.1| hypothetical protein CLOLEP_02870 [Clost... 144 5e-33
ref|ZP_01865638.1| putative regulatory protein [Vibrio shil... 143 1e-32
ref|NP_865044.1| putative aga operon transcriptional repres... 140 1e-31
ref|YP_001662219.1| transcriptional regulator, DeoR family ... 139 1e-31
ref|ZP_02044338.1| hypothetical protein ACTODO_01202 [Actin... 139 3e-31
ref|NP_624108.1| Transcriptional regulator of sugar metabol... 138 3e-31
ref|YP_001664159.1| transcriptional regulator, DeoR family ... 138 4e-31
ref|ZP_01094342.1| putative aga operon transcriptional repr... 137 8e-31
ref|ZP_02958569.1| Putative aga operon transcriptional repr... 135 2e-30
ref|YP_001470456.1| transcriptional regulator, DeoR family ... 134 7e-30
ref|ZP_01060560.1| transcriptional regulator, GlpR family p... 134 8e-30
ref|ZP_02849517.1| transcriptional regulator, DeoR family [... 133 1e-29
ref|ZP_01063128.1| Transcriptional regulator of sugar metab... 132 2e-29
ref|ZP_01217450.1| transcriptional repressor of aga operon ... 132 2e-29
ref|YP_177067.1| transcriptional regulator, DeoR family [Ba... 132 3e-29
ref|ZP_01784208.1| L-fucose operon activator [Haemophilus i... 131 5e-29
ref|NP_438773.1| L-fucose operon activator [Haemophilus inf... 130 7e-29
ref|ZP_01234292.1| transcriptional regulator of sugar metab... 130 7e-29
ref|ZP_01158539.1| Transcriptional regulator of sugar metab... 130 1e-28
ref|YP_589738.1| transcriptional regulator, DeoR family [Ac... 129 2e-28
ref|ZP_00154653.1| COG1349: Transcriptional regulators of s... 129 2e-28
ref|ZP_01793401.1| L-fucose operon activator [Haemophilus i... 129 2e-28
ref|YP_248426.1| L-fucose operon activator [Haemophilus inf... 128 3e-28
ref|ZP_02418839.1| hypothetical protein ANACAC_01423 [Anaer... 127 8e-28
ref|YP_429481.1| transcriptional regulator, GntR family [Mo... 127 9e-28
ref|NP_928175.1| Putative aga operon transcriptional repres... 125 2e-27
ref|ZP_01643203.1| transcriptional regulator, DeoR family [... 125 2e-27
ref|YP_174492.1| transcriptional regulator, DeoR family [Ba... 125 4e-27
ref|ZP_01789542.1| L-fucose operon activator [Haemophilus i... 124 5e-27
ref|YP_076127.1| DeoR-family transcriptional regulator [Sym... 123 1e-26
ref|YP_001179077.1| transcriptional regulator, DeoR family ... 123 1e-26
ref|YP_001391507.1| transcriptional regulator, DeoR family ... 122 2e-26
ref|ZP_01364842.1| hypothetical protein PaerPA_01001954 [Ps... 122 2e-26
ref|YP_132707.1| hypothetical transcriptional regulator Glp... 122 2e-26
ref|YP_879103.1| transcriptional regulator, DeoR family [Cl... 122 3e-26
ref|NP_250181.1| probable transcriptional regulator [Pseudo... 122 3e-26
ref|ZP_02204610.1| transcriptional regulator, DeoR family [... 122 3e-26
ref|YP_001781820.1| transcriptional regulator, DeoR family ... 121 5e-26
ref|YP_001478806.1| transcriptional regulator, DeoR family ... 120 6e-26
ref|ZP_02614557.1| transcriptional regulator, DeoR family [... 120 7e-26
ref|NP_471795.1| hypothetical protein lin2465 [Listeria inn... 120 8e-26
ref|ZP_02995619.1| hypothetical protein CLOSPO_02741 [Clost... 120 8e-26
ref|YP_001335365.1| putative bacterial regulatory protein, ... 120 1e-25
gb|EAZ02392.1| hypothetical protein OsI_023624 [Oryza sativ... 120 1e-25
ref|YP_872479.1| transcriptional regulator, DeoR family [Ac... 119 1e-25
ref|YP_001787586.1| transcriptional regulator, DeoR family ... 119 1e-25
ref|YP_764719.1| putative deoR family transcriptional regul... 119 1e-25
ref|YP_001590232.1| hypothetical protein SPAB_04072 [Salmon... 119 2e-25
ref|YP_001179179.1| transcriptional regulator, DeoR family ... 119 2e-25
ref|YP_001254704.1| DeoR family regulatory proteins [Clostr... 119 2e-25
ref|ZP_02436423.1| hypothetical protein BACSTE_02681 [Bacte... 119 2e-25
ref|YP_001336673.1| regulator for gut (srl), glucitol opero... 118 4e-25
ref|YP_001480073.1| transcriptional regulator, DeoR family ... 118 4e-25
ref|YP_001181210.1| transcriptional regulator, DeoR family ... 118 4e-25
ref|YP_177106.1| transcriptional regulator of sugar metabol... 117 5e-25
ref|ZP_02418845.1| hypothetical protein ANACAC_01429 [Anaer... 117 6e-25
ref|ZP_02646640.1| transcriptional regulator of sugar metab... 117 6e-25
ref|YP_302271.1| transcriptional regulator [Staphylococcus ... 117 7e-25
ref|NP_457646.1| galactitol utilization operon repressor [S... 117 8e-25
ref|NP_462175.1| galactitol utilization operon transcriptio... 117 8e-25
ref|ZP_02862503.1| hypothetical protein ANASTE_01722 [Anaer... 117 9e-25
ref|YP_001310612.1| transcriptional regulator, DeoR family ... 117 9e-25
ref|NP_762944.1| Transcriptional regulator of sugar metabol... 117 1e-24
ref|YP_752705.1| transcriptional regulator, DeoR family pro... 117 1e-24
ref|YP_080651.1| probable transcriptional regulator YulB [B... 117 1e-24
ref|YP_001885705.1| transcriptional regulator, DeoR family ... 116 1e-24
ref|YP_858672.1| glucitol operon repressor [Aeromonas hydro... 116 1e-24
ref|ZP_02697431.1| transcriptional regulator of sugar metab... 116 2e-24
ref|YP_927070.1| transcriptional regulator, GlpR family [Sh... 116 2e-24
ref|YP_592982.1| transcriptional regulator, DeoR family [Ac... 116 2e-24
ref|YP_001318709.1| transcriptional regulator, DeoR family ... 115 2e-24
ref|ZP_01706555.1| transcriptional regulator, DeoR family [... 115 2e-24
ref|YP_054860.1| transcriptional regulator, DeoR-family [Pr... 115 3e-24
ref|YP_428894.1| transcriptional regulator, DeoR family [Mo... 115 3e-24
ref|YP_271582.1| transcriptional regulator, DeoR family [Co... 115 3e-24
ref|ZP_02620452.1| transcriptional regulator, DeoR family [... 115 3e-24
ref|ZP_02296866.1| transcriptional regulator, DeoR family [... 115 4e-24
ref|YP_001111506.1| transcriptional regulator, DeoR family ... 114 4e-24
ref|YP_001556920.1| transcriptional regulator, DeoR family ... 114 5e-24
ref|NP_827534.1| DeoR-family transcriptional regulator [Str... 114 5e-24
ref|ZP_01234293.1| transcriptional regulator of sugar metab... 114 5e-24
ref|YP_001144006.1| transcriptional regulator, DeoR family ... 114 6e-24
ref|YP_001095962.1| transcriptional regulator, DeoR family ... 114 7e-24
ref|YP_404425.1| DNA-bindng transcriptional repressor [Shig... 114 7e-24
ref|YP_001178280.1| DNA-binding transcriptional dual regula... 114 7e-24
ref|ZP_01576264.1| transcriptional regulator, DeoR family [... 114 8e-24
ref|ZP_01739058.1| probable transcriptional regulator [Mari... 113 9e-24
ref|YP_001455563.1| hypothetical protein CKO_04061 [Citroba... 113 9e-24
ref|ZP_01550193.1| transcriptional regulator, DeoR family p... 113 1e-23
ref|NP_243034.1| transcriptional regulator (DeoR family) [B... 113 1e-23
ref|YP_311690.1| DNA-bindng transcriptional repressor [Shig... 113 1e-23
ref|ZP_01220261.1| hypothetical transcriptional regulator G... 113 1e-23
ref|ZP_02437926.1| hypothetical protein CLOSS21_00364 [Clos... 113 1e-23
ref|YP_001343752.1| transcriptional regulator, DeoR family ... 113 1e-23
ref|YP_965405.1| transcriptional regulator, DeoR family [Sh... 113 1e-23
ref|NP_417187.1| DNA-bindng transcriptional repressor [Esch... 113 1e-23
ref|ZP_02963506.1| probable DeoR-type transcriptional regul... 113 1e-23
ref|YP_929512.1| transcriptional regulator, DeoR family [Sh... 113 1e-23
ref|YP_001368538.1| transcriptional regulator, DeoR family ... 112 2e-23
ref|ZP_02040268.1| hypothetical protein RUMGNA_01032 [Rumin... 112 2e-23
ref|YP_001738678.1| transcriptional regulator, DeoR family ... 112 2e-23
ref|YP_885763.1| DeoR-family protein transcriptional regula... 112 2e-23
ref|NP_708514.1| DNA-bindng transcriptional repressor [Shig... 112 2e-23
ref|YP_001676485.1| transcriptional regulator, DeoR family ... 112 2e-23
ref|NP_755142.1| DNA-bindng transcriptional repressor [Esch... 112 2e-23
ref|ZP_00206682.1| COG1349: Transcriptional regulators of s... 112 2e-23
ref|ZP_02417949.1| hypothetical protein ANACAC_00516 [Anaer... 112 2e-23
ref|YP_001504080.1| transcriptional regulator, DeoR family ... 112 2e-23
ref|YP_001558304.1| transcriptional regulator, DeoR family ... 112 2e-23
ref|YP_001476212.1| transcriptional regulator, DeoR family ... 112 2e-23
ref|YP_001744854.1| glucitol operon repressor [Escherichia ... 112 2e-23
ref|YP_001052692.1| transcriptional regulator, DeoR family ... 112 3e-23
ref|NP_792979.1| transcriptional regulator, DeoR family [Ps... 112 3e-23
ref|NP_762943.1| Transcriptional regulator of sugar metabol... 112 3e-23
ref|NP_937574.1| transcriptional regulator of sugar metabol... 111 3e-23
ref|ZP_01844092.1| transcriptional regulator, DeoR family [... 111 4e-23
ref|NP_457231.1| DNA-bindng transcriptional repressor [Salm... 111 4e-23
ref|ZP_02644388.1| hypothetical protein Senterenterica_0210... 111 4e-23
ref|YP_910196.1| probable DeoR-type transcriptional regulat... 111 4e-23
ref|NP_349557.1| Lactose phosphotransferase system represso... 111 4e-23
ref|ZP_02029360.1| hypothetical protein BIFADO_01817 [Bifid... 111 4e-23
ref|NP_311590.1| DNA-bindng transcriptional repressor [Esch... 111 4e-23
ref|ZP_01545715.1| glycerol-3-phosphate regulon repressor [... 111 4e-23
ref|YP_001763237.1| transcriptional regulator, DeoR family ... 111 4e-23
ref|YP_236129.1| regulatory protein, DeoR [Pseudomonas syri... 111 5e-23
ref|ZP_02436388.1| hypothetical protein BACSTE_02646 [Bacte... 111 5e-23
ref|YP_001371444.1| transcriptional regulator, DeoR family ... 111 5e-23
ref|ZP_01000679.1| transcriptional regulator, DeoR family p... 111 5e-23
ref|NP_696383.1| probable DeoR-type transcriptional regulat... 111 5e-23
ref|NP_390999.1| hypothetical protein BSU31210 [Bacillus su... 111 5e-23
ref|YP_001238652.1| putative Transcriptional regulatory pro... 110 6e-23
ref|NP_759628.1| Transcriptional regulator of sugar metabol... 110 6e-23
ref|NP_933294.1| transcriptional regulator of sugar metabol... 110 6e-23
ref|ZP_02354557.1| glycerol-3-phosphate regulon repressor [... 110 6e-23
ref|YP_832857.1| transcriptional regulator, DeoR family [Ar... 110 6e-23
ref|ZP_01158541.1| hypothetical GlpR, transcriptional regul... 110 7e-23
ref|YP_089508.1| DNA-bindng transcriptional repressor [Mann... 110 7e-23
ref|NP_252273.1| glycerol-3-phosphate regulon repressor [Ps... 110 7e-23
ref|ZP_02544232.1| Putative aga operon transcriptional repr... 110 8e-23
ref|YP_001221089.1| putative transcriptional regulator, Deo... 110 8e-23
ref|ZP_02072346.1| hypothetical protein BACUNI_03792 [Bacte... 110 8e-23
ref|YP_001190081.1| transcriptional regulator, DeoR family ... 110 9e-23
ref|YP_257646.1| transcriptional regulator, DeoR family [Ps... 110 9e-23
ref|NP_939781.1| Putative sugar related operon transcriptio... 110 9e-23
ref|NP_357123.1| transcriptional regulator, DeoR family [Ag... 110 9e-23
ref|ZP_02918054.1| hypothetical protein BIFDEN_01353 [Bifid... 110 1e-22
ref|YP_946156.1| putative transcriptional regulator, DeoR f... 110 1e-22
ref|ZP_01254559.1| Putative aga operon transcriptional repr... 110 1e-22
ref|YP_001569229.1| hypothetical protein SARI_00134 [Salmon... 110 1e-22
ref|YP_403128.1| putative DEOR-type transcriptional regulat... 110 1e-22
gb|AAB57805.1| Glp repressor [Pseudomonas aeruginosa] 110 1e-22
ref|ZP_01929025.1| hypothetical protein LMIG_02178 [Listeri... 109 1e-22
ref|YP_001626272.1| transcriptional regulators of sugar met... 109 1e-22
ref|YP_001645626.1| transcriptional regulator, DeoR family ... 109 1e-22
ref|YP_300613.1| putative transcriptional regulator of suga... 109 1e-22
gb|AAT50505.1| PA3583 [synthetic construct] 109 1e-22
ref|ZP_02372786.1| glycerol-3-phosphate regulon repressor [... 109 2e-22
ref|NP_242419.1| transcriptional regulator (DeoR family) [B... 109 2e-22
ref|YP_610929.1| transcriptional repressor, DeoR family [Ps... 109 2e-22
ref|ZP_02327036.1| DeoR-family transcriptional regulator [P... 109 2e-22
ref|YP_001783909.1| transcriptional regulator, DeoR family ... 109 2e-22
ref|YP_949050.1| putative transcriptional regulator, DeoR f... 109 2e-22
ref|YP_001179795.1| transcriptional regulator, DeoR family ... 109 2e-22
ref|ZP_01967255.1| hypothetical protein RUMTOR_00801 [Rumin... 109 2e-22
ref|YP_441160.1| glycerol-3-phosphate regulon repressor [Bu... 109 2e-22
ref|ZP_02462409.1| glycerol-3-phosphate regulon repressor [... 109 2e-22
ref|YP_536841.1| Transcriptional regulator, DeoR family [La... 108 2e-22
ref|NP_626163.1| transcriptional regulator [Streptomyces co... 108 2e-22
ref|ZP_02686955.1| hypothetical protein LmonFSL_01237 [List... 108 2e-22
ref|ZP_02826078.1| transcriptional regulator, DeoR family p... 108 2e-22
ref|YP_001511311.1| transcriptional regulator, DeoR family ... 108 2e-22
ref|YP_176713.1| transcriptional regulator of sugar metabol... 108 3e-22
ref|ZP_02900487.1| transcriptional regulator, DeoR family [... 108 3e-22
ref|ZP_01161108.1| Transcriptional regulator of sugar metab... 108 3e-22
ref|NP_700036.1| transcriptional regulator, DeoR family [Br... 108 3e-22
ref|YP_001724837.1| transcriptional regulator, DeoR family ... 108 3e-22
ref|NP_720258.1| transcriptional regulator, DeoR family [Sh... 108 3e-22
ref|ZP_02087560.1| hypothetical protein CLOBOL_05104 [Clost... 108 3e-22
ref|ZP_00419188.1| regulatory protein, DeoR [Azotobacter vi... 108 3e-22
ref|NP_541404.1| TRANSCRIPTIONAL REGULATOR, DEOR FAMILY [Br... 108 3e-22
ref|YP_001245256.1| transcriptional regulator, DeoR family ... 108 3e-22
ref|ZP_02158652.1| transcriptional regulator, DeoR family p... 108 3e-22
ref|NP_404452.1| DeoR-family regulatory protein [Yersinia p... 108 3e-22
ref|NP_463882.1| hypothetical protein lmo0352 [Listeria mon... 108 3e-22
ref|NP_228875.1| transcriptional regulator, DeoR family [Th... 108 4e-22
ref|YP_001174651.1| probable transcriptional regulator [Pse... 108 4e-22
ref|YP_001893716.1| transcriptional regulator, DeoR family ... 108 4e-22
ref|YP_001861196.1| transcriptional regulator, DeoR family ... 108 4e-22
ref|YP_001433525.1| transcriptional regulator, DeoR family ... 108 4e-22
ref|ZP_01751524.1| probable glycerol-3-phosphate regulon re... 108 4e-22
ref|YP_001743479.1| transcriptional regulator, DeoR family ... 108 5e-22
ref|NP_230140.1| transcriptional regulator, DeoR family [Vi... 108 5e-22
ref|NP_469715.1| hypothetical protein lin0370 [Listeria inn... 108 5e-22
ref|ZP_01216887.1| DeoR-family transcriptional regulator [P... 107 5e-22
ref|YP_740047.1| transcriptional regulator, DeoR family [Sh... 107 5e-22
ref|YP_001752041.1| transcriptional regulator, DeoR family ... 107 5e-22
ref|YP_719352.1| galactitol utilization operon repressor [H... 107 5e-22
ref|YP_001784366.1| transcriptional regulator, DeoR family ... 107 5e-22
ref|YP_884921.1| transcriptional regulatory protein [Mycoba... 107 5e-22
ref|YP_553651.1| Transcriptional regulator, DeoR family [Bu... 107 5e-22
ref|YP_001831519.1| transcriptional regulator, DeoR family ... 107 5e-22
ref|YP_736041.1| transcriptional regulator, DeoR family [Sh... 107 5e-22
ref|YP_542537.1| DNA-binding transcriptional dual regulator... 107 6e-22
ref|ZP_01066399.1| transcriptional regulator, DeoR family p... 107 6e-22
ref|ZP_01814070.1| transcriptional regulator, DeoR family p... 107 6e-22
ref|ZP_02417540.1| hypothetical protein ANACAC_00104 [Anaer... 107 6e-22
ref|YP_001664596.1| transcriptional regulator, DeoR family ... 107 7e-22
ref|ZP_00735765.1| COG1349: Transcriptional regulators of s... 107 7e-22
ref|NP_289702.1| DNA-binding transcriptional dual regulator... 107 7e-22
ref|ZP_02418293.1| hypothetical protein ANACAC_00862 [Anaer... 107 7e-22
ref|NP_708928.1| DNA-binding transcriptional dual regulator... 107 7e-22
ref|YP_001745406.1| transcriptional regulator, DeoR family ... 107 7e-22
ref|YP_001671645.1| transcriptional regulator, DeoR family ... 107 7e-22
ref|YP_001456019.1| hypothetical protein CKO_04529 [Citroba... 107 7e-22
gb|EDN12628.1| transcriptional regulator, DeoR family [Vibr... 107 8e-22
ref|YP_012981.1| transcriptional regulator, DeoR family [Li... 107 8e-22
ref|NP_288206.1| putative DEOR-type transcriptional regulat... 107 8e-22
ref|YP_001361287.1| transcriptional regulator, DeoR family ... 107 8e-22
ref|YP_719742.1| transcriptional regulator, DeoR family [Ha... 107 8e-22
ref|YP_553441.1| Transcriptional regulator, DeoR family [Bu... 107 9e-22
ref|YP_946166.1| putative transcriptional regulator, DeoR f... 107 9e-22
ref|YP_001583649.1| transcriptional regulator, DeoR family ... 107 1e-21
ref|YP_871749.1| transcriptional regulator, DeoR family [Sh... 107 1e-21
ref|YP_001103030.1| DeoR-family transcriptional regulator [... 107 1e-21
ref|YP_013002.1| transcriptional regulator, DeoR family [Li... 107 1e-21
ref|YP_102075.1| glycerol-3-phosphate regulon repressor [Bu... 107 1e-21
gb|EDN73312.1| DeoR family transcriptional regulator [Mannh... 106 1e-21
ref|ZP_02846416.1| transcriptional regulator, DeoR family [... 106 1e-21
ref|YP_001277047.1| transcriptional regulator, DeoR family ... 106 1e-21
ref|NP_627412.1| deoR-family transcriptional regulator [Str... 106 1e-21
ref|ZP_02276350.1| transcriptional regulator, DeoR family p... 106 1e-21
ref|YP_263271.1| transcriptional regulator, DeoR family [Ps... 106 1e-21
ref|YP_107320.1| putative DeoR family glycerol-3-phosphate ... 106 1e-21
ref|ZP_02284007.1| transcriptional regulator, DeoR family p... 106 1e-21
ref|YP_001464604.1| transcriptional regulator, DeoR family ... 106 1e-21
ref|ZP_01722567.1| transcriptional regulator, deoR family p... 106 2e-21
ref|YP_564740.1| regulatory protein, DeoR [Shewanella denit... 106 2e-21
ref|ZP_02081425.1| hypothetical protein CLOLEP_02900 [Clost... 106 2e-21
ref|YP_001856662.1| transcriptional regulator, DeoR family ... 106 2e-21
ref|YP_001662714.1| transcriptional regulator, DeoR family ... 106 2e-21
ref|ZP_01926349.1| hypothetical protein LMHG_01998 [Listeri... 106 2e-21
ref|YP_001821947.1| putative DeoR-family transcriptional re... 106 2e-21
ref|ZP_02308337.1| hypothetical protein LmonocytFSL_02731 [... 106 2e-21
ref|NP_747510.1| transcriptional regulator, DeoR family [Ps... 106 2e-21
ref|ZP_01939829.1| hypothetical protein LMRG_00075 [Listeri... 106 2e-21
ref|NP_463912.1| hypothetical protein lmo0382 [Listeria mon... 105 2e-21
ref|NP_707343.1| putative DEOR-type transcriptional regulat... 105 2e-21
ref|ZP_02432287.1| hypothetical protein CLOSCI_02532 [Clost... 105 2e-21
gb|EDK52352.1| glycerol-3-phosphate regulon repressor [Burk... 105 2e-21
ref|YP_074622.1| DeoR-family transcriptional regulator [Sym... 105 2e-21
ref|YP_001307597.1| transcriptional regulator, DeoR family ... 105 2e-21
ref|ZP_02846747.1| transcriptional regulator, DeoR family [... 105 2e-21
ref|YP_529416.1| Chitinase II [Saccharophagus degradans 2-4... 105 2e-21
ref|YP_001344055.1| transcriptional regulator, DeoR family ... 105 2e-21
ref|ZP_01449389.1| transcriptional regulator, DeoR family p... 105 2e-21
ref|NP_106319.1| transcriptional regulator [Mesorhizobium l... 105 2e-21
emb|CAA74946.1| repressor of srl operon [Erwinia amylovora] 105 3e-21
ref|YP_351451.1| Transcriptional Regulator, DeoR family [Ps... 105 3e-21
ref|YP_848765.1| DeoR-type transcriptional regulator, putat... 105 3e-21
ref|YP_001351662.1| probable transcriptional regulator [Pse... 105 3e-21
ref|YP_794028.1| GlmR transcriptional regulator [Pseudomona... 105 3e-21
ref|ZP_02438263.1| hypothetical protein CLOSS21_00704 [Clos... 105 3e-21
ref|ZP_02085942.1| hypothetical protein CLOBOL_03485 [Clost... 105 3e-21
ref|YP_001625927.1| transcriptional regulator, DeoR family ... 105 3e-21
ref|YP_804662.1| lactose transport regulator [Pediococcus p... 105 3e-21
ref|YP_001258226.1| glycerol-3-phosphate regulon repressor ... 105 3e-21
ref|ZP_00440262.1| COG1349: Transcriptional regulators of s... 105 3e-21
ref|YP_001341959.1| transcriptional regulator, DeoR family ... 105 3e-21
ref|YP_274401.1| transcriptional regulator, DeoR family [Ps... 105 3e-21
ref|ZP_00822968.1| COG1349: Transcriptional regulators of s... 105 3e-21
ref|ZP_01368570.1| hypothetical protein PaerPA_01005731 [Ps... 105 3e-21
ref|YP_622961.1| transcriptional regulator, DeoR family [Bu... 105 3e-21
ref|ZP_00977792.1| COG1349: Transcriptional regulators of s... 105 4e-21
ref|NP_254237.1| GlmR transcriptional regulator [Pseudomona... 105 4e-21
ref|YP_001104502.1| transcriptional regulator, DeoR family ... 105 4e-21
ref|NP_697236.1| glycerol-3-phosphate transcriptional regul... 105 4e-21
ref|ZP_00824807.1| COG1349: Transcriptional regulators of s... 105 4e-21
ref|NP_688925.1| lactose phosphotransferase system represso... 105 4e-21
ref|NP_540667.1| GLYCEROL-3-PHOSPHATE REGULON REPRESSOR [Br... 105 4e-21
ref|ZP_00987454.1| COG1349: Transcriptional regulators of s... 105 4e-21
ref|YP_848509.1| transcriptional regulator, DeoR family [Li... 105 4e-21
ref|YP_370240.1| transcriptional regulator, DeoR family [Bu... 105 4e-21
ref|YP_575324.1| transcriptional regulator, DeoR family [Ch... 105 4e-21
ref|YP_924371.1| regulatory protein, DeoR [Nocardioides sp.... 105 4e-21
ref|YP_087379.1| GlpR protein [Mannheimia succiniciproducen... 105 4e-21
ref|YP_001896931.1| transcriptional regulator, DeoR family ... 104 4e-21
ref|YP_001463069.1| transcriptional regulator, DeoR family ... 104 4e-21
ref|YP_001368828.1| transcriptional regulator, DeoR family ... 104 5e-21
ref|NP_416284.1| predicted DNA-binding transcriptional regu... 104 5e-21
ref|ZP_02308311.1| hypothetical protein LmonocytFSL_02516 [... 104 5e-21
ref|ZP_01261614.1| transcriptional regulator, DeoR family p... 104 5e-21
ref|ZP_00832973.1| COG1349: Transcriptional regulators of s... 104 5e-21
ref|YP_131941.1| hypothetical transcriptional regulator [Ph... 104 5e-21
gb|EAY67973.1| regulatory protein DeoR [Burkholderia dolosa... 104 5e-21
ref|YP_001115979.1| transcriptional regulator, DeoR family ... 104 5e-21
ref|YP_001337214.1| putative DEOR-type transcriptional regu... 104 5e-21
ref|NP_246378.1| GlpR [Pasteurella multocida subsp. multoci... 104 5e-21
ref|ZP_00993297.1| transcriptional regulator, DeoR family [... 104 5e-21
ref|YP_001635888.1| regulatory protein DeoR [Chloroflexus a... 104 5e-21
ref|NP_349552.1| Lactose phosphotransferase system represso... 104 5e-21
ref|ZP_01517132.1| regulatory protein, DeoR [Chloroflexus a... 104 5e-21
ref|NP_346872.1| Transcripcional regulator of sugar metabol... 104 5e-21
ref|YP_001570204.1| hypothetical protein SARI_01157 [Salmon... 104 6e-21
ref|ZP_01221745.1| Putative transcriptional regulator, DeoR... 104 6e-21
ref|YP_836317.1| transcriptional regulator, DeoR family [Bu... 104 6e-21
ref|ZP_01118030.1| Putative aga operon transcriptional repr... 104 6e-21
ref|YP_001108411.1| putative DeoR-family transcriptional re... 104 6e-21
ref|ZP_00784629.1| lactose phosphotransferase system repres... 104 6e-21
ref|YP_330491.1| lactose phosphotransferase system represso... 104 6e-21
ref|ZP_02890840.1| transcriptional regulator, DeoR family [... 104 6e-21
ref|ZP_00788199.1| lactose phosphotransferase system repres... 104 6e-21
ref|YP_776519.1| transcriptional regulator, DeoR family [Bu... 104 6e-21
ref|ZP_01695798.1| transcriptional regulator, DeoR family [... 104 6e-21
ref|ZP_00830190.1| COG1349: Transcriptional regulators of s... 104 6e-21
ref|YP_560343.1| Transcriptional regulator, DeoR family [Bu... 104 6e-21
ref|ZP_02985623.1| transcriptional regulator, DeoR family [... 104 6e-21
ref|ZP_02667747.1| transcriptional regulator, DeoR family p... 104 7e-21
ref|ZP_02890046.1| transcriptional regulator, DeoR family [... 104 7e-21
ref|ZP_01962371.1| hypothetical protein RUMOBE_00084 [Rumin... 103 7e-21
ref|ZP_00831922.1| COG1349: Transcriptional regulators of s... 103 7e-21
ref|ZP_01473340.1| hypothetical protein VEx2w_02004109 [Vib... 103 7e-21
ref|ZP_00833109.1| COG1349: Transcriptional regulators of s... 103 7e-21
ref|YP_734664.1| transcriptional regulator, DeoR family [Sh... 103 7e-21
ref|YP_001559137.1| transcriptional regulator, DeoR family ... 103 8e-21
ref|YP_870335.1| transcriptional regulator, DeoR family [Sh... 103 8e-21
ref|ZP_02907380.1| transcriptional regulator, DeoR family [... 103 8e-21
ref|YP_206964.1| DNA-binding transcriptional dual regulator... 103 8e-21
ref|YP_621937.1| transcriptional regulator, DeoR family [Bu... 103 9e-21
ref|ZP_02377915.1| transcriptional regulator, DeoR family p... 103 1e-20
ref|ZP_01870339.1| DNA-bindng transcriptional repressor [Vi... 103 1e-20
ref|NP_691419.1| transcriptional regulator [Oceanobacillus ... 103 1e-20
ref|ZP_00415360.1| regulatory protein, DeoR [Azotobacter vi... 103 1e-20
ref|YP_772694.1| transcriptional regulator, DeoR family [Bu... 103 1e-20
ref|ZP_02884566.1| transcriptional regulator, DeoR family [... 103 1e-20
ref|ZP_02849953.1| transcriptional regulator, DeoR family [... 103 1e-20
ref|YP_429560.1| transcriptional regulator, DeoR family [Mo... 103 1e-20
ref|YP_001006660.1| DNA-binding transcriptional dual regula... 103 1e-20
ref|ZP_01220262.1| hypothetical GlpR, transcriptional regul... 103 1e-20
ref|YP_001578815.1| transcriptional regulator, DeoR family ... 103 1e-20
ref|YP_524969.1| transcriptional regulator, DeoR family [Rh... 103 1e-20
ref|YP_001828378.1| putative DeoR-family transcriptional re... 103 1e-20
ref|NP_625321.1| transcriptional regulatory protein [Strept... 103 1e-20
ref|YP_001005424.1| DNA-bindng transcriptional repressor [Y... 103 1e-20
ref|YP_119067.1| putative transcriptional regulator [Nocard... 103 1e-20
ref|YP_001120612.1| transcriptional regulator, DeoR family ... 103 1e-20
ref|ZP_00980590.1| COG1349: Transcriptional regulators of s... 103 1e-20
ref|ZP_02906653.1| transcriptional regulator, DeoR family [... 103 1e-20
ref|YP_001765985.1| transcriptional regulator, DeoR family ... 103 1e-20
ref|NP_623520.1| Transcriptional regulator of sugar metabol... 103 1e-20
ref|YP_496327.1| transcriptional regulator, DeoR family [No... 103 2e-20
ref|YP_132708.1| hypothetical GlpR, transcriptional regulat... 103 2e-20
ref|YP_131658.1| Putative transcriptional regulator, DeoR f... 103 2e-20
ref|ZP_01748568.1| transcriptional regulator [Sagittula ste... 103 2e-20
ref|YP_001811825.1| transcriptional regulator, DeoR family ... 102 2e-20
ref|YP_001035634.1| Transcriptional repressor of sugar meta... 102 2e-20
ref|ZP_00234161.1| transcriptional regulator, DeoR family [... 102 2e-20
ref|ZP_00604224.1| regulatory protein, DeoR [Enterococcus f... 102 2e-20
ref|ZP_02478965.1| transcriptional repressor AgaR [Haemophi... 102 2e-20
ref|YP_001188831.1| transcriptional regulator, DeoR family ... 102 2e-20
ref|YP_001809292.1| transcriptional regulator, DeoR family ... 102 2e-20
ref|YP_001479798.1| transcriptional regulator, DeoR family ... 102 2e-20
ref|YP_001724628.1| transcriptional regulator, DeoR family ... 102 2e-20
ref|ZP_01994087.1| hypothetical protein DORLON_00060 [Dorea... 102 2e-20
ref|NP_469745.1| hypothetical protein lin0400 [Listeria inn... 102 2e-20
ref|YP_682672.1| transcriptional regulator, DeoR family, pu... 102 2e-20
ref|ZP_02138323.1| transcriptional regulator, DeoR family p... 102 2e-20
ref|ZP_01441805.1| Bacterial regulatory protein, DeoR famil... 102 2e-20
ref|NP_396176.2| transcriptional regulator, DeoR family [Ag... 102 2e-20
ref|YP_001420813.1| LacR [Bacillus amyloliquefaciens FZB42]... 102 2e-20
ref|ZP_01063129.1| hypothetical GlpR, transcriptional regul... 102 2e-20
ref|YP_774617.1| transcriptional regulator, DeoR family [Bu... 102 2e-20
ref|YP_371135.1| transcriptional regulator, DeoR family [Bu... 102 2e-20
ref|ZP_01899906.1| transcriptional regulator, DeoR family [... 102 2e-20
ref|ZP_00983941.1| COG1349: Transcriptional regulators of s... 102 3e-20
ref|YP_001087220.1| DeoR-family transcriptional regulator [... 102 3e-20
ref|NP_795314.1| transcriptional regulator, DeoR family [Ps... 102 3e-20
ref|ZP_01131509.1| transcriptional regulator, DeoR family p... 102 3e-20
ref|ZP_02297180.1| transcriptional regulator, DeoR family [... 102 3e-20
ref|YP_001888720.1| transcriptional regulator, DeoR family ... 102 3e-20
ref|YP_153091.1| deoR family regulatory protein [Salmonella... 102 3e-20
ref|YP_205756.1| DNA-bindng transcriptional repressor [Vibr... 102 3e-20
gb|EAY71082.1| regulatory protein DeoR [Burkholderia dolosa... 102 3e-20
ref|NP_874033.1| glycerol-3-phosphate regulon repressor [Ha... 102 3e-20
ref|ZP_00996757.1| putative DeoR-family transcriptional reg... 102 3e-20
ref|YP_174158.1| transcriptional regulator of sugar metabol... 102 3e-20
ref|YP_850486.1| transcriptional regulator, DeoR family [Li... 101 4e-20
ref|ZP_02330933.1| transcriptional regulator, DeoR family p... 101 4e-20
ref|YP_855356.1| DNA-binding transcriptional dual regulator... 101 4e-20
ref|YP_771448.1| putative DeoR family transcriptional regul... 101 4e-20
ref|NP_822608.1| DeoR-family transcriptional regulator [Str... 101 4e-20
ref|YP_001118705.1| transcriptional regulator, DeoR family ... 101 4e-20
ref|NP_900346.1| glucitol operon repressor [Chromobacterium... 101 4e-20
ref|ZP_01448250.1| transcriptional regulator, DeoR family p... 101 4e-20
ref|ZP_02164673.1| DeoR-family transcriptional regulator [H... 101 4e-20
ref|YP_001583422.1| transcriptional regulator, DeoR family ... 101 4e-20
ref|YP_238183.1| regulatory protein, DeoR [Pseudomonas syri... 101 4e-20
ref|YP_368284.1| transcriptional regulator, DeoR family [Bu... 101 4e-20
ref|ZP_02891139.1| transcriptional regulator, DeoR family [... 101 4e-20
ref|ZP_00725206.1| COG1349: Transcriptional regulators of s... 101 4e-20
ref|YP_250889.1| putative transcriptional regulator (DeoR f... 101 5e-20
ref|YP_001104366.1| transcriptional regulator, DeoR family ... 101 5e-20
ref|YP_001006866.1| DeoR family regulatory protein [Yersini... 101 5e-20
ref|ZP_02139101.1| transcriptional regulator, DeoR family, ... 101 5e-20
ref|NP_471761.1| hypothetical protein lin2431 [Listeria inn... 101 5e-20
ref|ZP_02833201.1| transcriptional regulator, DeoR family p... 101 5e-20
ref|ZP_02419367.1| hypothetical protein ANACAC_01954 [Anaer... 101 5e-20
ref|YP_001631198.1| glpR [Bordetella petrii DSM 12804] >gi|... 101 5e-20
ref|YP_277277.1| transcriptional regulator, DeoR family [Ps... 101 6e-20
ref|NP_796737.1| transcriptional regulator, DeoR family [Vi... 101 6e-20
ref|ZP_00720834.1| COG1349: Transcriptional regulators of s... 101 6e-20
ref|YP_131813.1| putative DeoR-family regulatory protein [P... 101 6e-20
ref|YP_001168571.1| transcriptional regulator, DeoR family ... 101 6e-20
ref|YP_534267.1| transcriptional regulator, DeoR family [Rh... 101 6e-20
ref|NP_881259.1| glycerol-3-phosphate regulon repressor pro... 100 6e-20
ref|NP_889595.1| glycerol-3-phosphate regulon repressor pro... 100 6e-20
ref|ZP_01896093.1| transcriptional repressor for the dissim... 100 6e-20
ref|YP_001709347.1| putative DeoR-family transcriptional re... 100 6e-20
ref|YP_001573286.1| hypothetical protein SARI_04365 [Salmon... 100 6e-20
ref|YP_429351.1| transcriptional regulator, DeoR family [Mo... 100 7e-20
ref|ZP_01442922.1| transcriptional regulator, DeoR family p... 100 7e-20
ref|YP_001681214.1| transcriptional regulator, deor family ... 100 7e-20
ref|ZP_02420544.1| hypothetical protein ANACAC_03161 [Anaer... 100 7e-20
ref|ZP_02599467.1| transcriptional regulator, DeoR family p... 100 8e-20
ref|YP_001478920.1| transcriptional regulator, DeoR family ... 100 8e-20
ref|ZP_02585608.1| transcriptional regulator, DeoR family p... 100 9e-20
ref|YP_001792245.1| transcriptional regulator, DeoR family ... 100 9e-20
>ref|NP_269998.1| putative transcriptional regulator [Streptococcus pyogenes M1 GAS]
gb|AAK34719.1| putative transcriptional regulator [Streptococcus pyogenes M1 GAS]
Length = 248
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI
Sbjct: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 241 GLVLDFVS 248
>ref|YP_283111.1| transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS5005]
ref|YP_597489.1| transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS9429]
ref|YP_601378.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS2096]
gb|AAZ52366.1| transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS5005]
gb|ABF32945.1| transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS9429]
gb|ABF36834.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS2096]
Length = 249
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 2 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 61
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI
Sbjct: 62 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 121
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 122 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 181
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 182 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 241
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 242 GLVLDFVS 249
>ref|YP_599426.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS10270]
ref|YP_603336.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS10750]
gb|ABF34882.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS10270]
gb|ABF38792.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS10750]
Length = 249
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/248 (99%), Positives = 248/248 (100%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 2 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 61
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIK+ITNSCFI
Sbjct: 62 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKIITNSCFI 121
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 122 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 181
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 182 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 241
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 242 GLVLDFVS 249
>ref|NP_665558.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
ref|NP_803014.1| putative transcriptional regulator [Streptococcus pyogenes SSI-1]
gb|AAM80361.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
dbj|BAC64847.1| putative transcriptional regulator [Streptococcus pyogenes SSI-1]
Length = 248
Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/248 (99%), Positives = 248/248 (100%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQL+VSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MNRLERIIQLVSQKKKIDVNSLSEQLEVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIK+ITNSCFI
Sbjct: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKIITNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 241 GLVLDFVS 248
>ref|YP_061066.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS10394]
gb|AAT87883.1| Transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS10394]
Length = 249
Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/248 (99%), Positives = 247/248 (99%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQL+VSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 2 MNRLERIIQLVSQKKKIDVNSLSEQLEVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 61
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQ KRNIKVITNSCFI
Sbjct: 62 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQNKRNIKVITNSCFI 121
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 122 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 181
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 182 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 241
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 242 GLVLDFVS 249
>ref|NP_608073.1| putative transcriptional regulator [Streptococcus pyogenes
MGAS8232]
gb|AAL98572.1| putative transcriptional regulator [Streptococcus pyogenes
MGAS8232]
Length = 248
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/248 (99%), Positives = 247/248 (99%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQL+VSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MNRLERIIQLVSQKKKIDVNSLSEQLEVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQ KRNIKVITNSCFI
Sbjct: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQNKRNIKVITNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 241 GLVLDFVS 248
>ref|YP_001129227.1| DeoR family regulatory protein [Streptococcus pyogenes str.
Manfredo]
emb|CAM31031.1| DeoR family regulatory protein [Streptococcus pyogenes str.
Manfredo]
Length = 248
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/248 (98%), Positives = 247/248 (99%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQL+VSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MNRLERIIQLVSQKKKIDVNSLSEQLEVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQ KRNIK+ITNSCFI
Sbjct: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQNKRNIKIITNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
Sbjct: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 241 GLVLDFVS 248
>ref|ZP_00365881.1| COG1349: Transcriptional regulators of sugar metabolism
[Streptococcus pyogenes M49 591]
ref|YP_281200.1| transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS6180]
gb|AAX72845.1| transcriptional regulator, DeoR family [Streptococcus pyogenes
MGAS6180]
Length = 249
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/248 (98%), Positives = 247/248 (99%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLERIIQLVSQKKKIDVNSLSEQL+VSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 2 MNRLERIIQLVSQKKKIDVNSLSEQLEVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 61
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIK+ITNSCFI
Sbjct: 62 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKIITNSCFI 121
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
Sbjct: 122 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 181
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS+
Sbjct: 182 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSSG 241
Query: 241 GLVLDFVS 248
GLVLDFVS
Sbjct: 242 GLVLDFVS 249
>ref|NP_720931.1| putative DeoR-type transcriptional regulator [Streptococcus mutans
UA159]
gb|AAN58237.1|AE014895_2 putative DeoR-type transcriptional regulator [Streptococcus mutans
UA159]
Length = 248
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/248 (73%), Positives = 219/248 (88%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RL+ II LVSQ+KKIDVN+LSE+L VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLDEIINLVSQEKKIDVNTLSEKLGVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLSYNYNIK+RIA KA ELV+DN+TIMIESGSTCALLAE +CQ++RN+K+ITNSCFI
Sbjct: 61 LNVRLSYNYNIKKRIAAKAVELVRDNETIMIESGSTCALLAEAICQSRRNVKIITNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
A YIR+Y SCQ+ILLGG YQPNSEVTVGPLLKEM+ LFHV ++FVGTDGF+ +LGFMGKD
Sbjct: 121 ATYIRKYDSCQVILLGGNYQPNSEVTVGPLLKEMLKLFHVEKLFVGTDGFDDELGFMGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MMR E V+YMA++A+E+V+LTDSSKF+K SLV+Q +L+ V++VITD A+ + +E L A+
Sbjct: 181 MMRCEVVQYMAESADELVVLTDSSKFAKRSLVNQFTLSQVSQVITDSAISEARREHLIAN 240
Query: 241 GLVLDFVS 248
+ L V+
Sbjct: 241 HINLKLVN 248
>ref|NP_687360.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
2603V/R]
ref|NP_734783.1| hypothetical protein gbs0314 [Streptococcus agalactiae NEM316]
ref|YP_329048.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
A909]
ref|ZP_00780072.1| DEOR-type transcription regulator [Streptococcus agalactiae 18RS21]
ref|ZP_00782050.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
H36B]
ref|ZP_00786983.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
CJB111]
ref|ZP_00789501.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
515]
gb|AAM99232.1|AE014206_12 transcriptional regulator, DeoR family [Streptococcus agalactiae
2603V/R]
emb|CAD45959.1| unknown [Streptococcus agalactiae NEM316]
gb|ABA44535.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
A909]
gb|EAO63314.1| DEOR-type transcription regulator [Streptococcus agalactiae 18RS21]
gb|EAO71736.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
515]
gb|EAO74289.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
CJB111]
gb|EAO79156.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
H36B]
Length = 251
Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 201/237 (84%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLE II LVSQ +KIDVN+LSE L VSKVTIRKDLDKLE KGLL REHGYAVLNSGDD
Sbjct: 1 MNRLENIISLVSQYQKIDVNTLSELLQVSKVTIRKDLDKLEGKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS+N+ K+ IA AA +V DNDTI+IESGSTCALLAE +CQTKRN+ ++TNSCFI
Sbjct: 61 LNVRLSFNHKTKKEIAALAANMVSDNDTILIESGSTCALLAENICQTKRNVTILTNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANY+R+Y SCQI+LLGG YQ +S+VTVGPLLK+MISLFHV+ FVGTDGF+ LGFMG+D
Sbjct: 121 ANYLREYDSCQIVLLGGEYQSSSQVTVGPLLKKMISLFHVSLAFVGTDGFDPKLGFMGRD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+MRSE + MA+AA+EV+ILTDSSKF++T+LV QL L+ V++VITD+ + + L
Sbjct: 181 LMRSEVAQEMANAADEVIILTDSSKFNQTALVEQLPLSTVSQVITDKHPNSEIANLF 237
>ref|ZP_00784868.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
COH1]
gb|EAO76427.1| transcriptional regulator, DeoR family [Streptococcus agalactiae
COH1]
Length = 251
Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 165/227 (72%), Positives = 198/227 (87%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
MNRLE II LVSQ +KIDVN+LSE L VSKVTIRKDLDKLE KGLL REHGYAVLNSGDD
Sbjct: 1 MNRLENIISLVSQYQKIDVNTLSELLQVSKVTIRKDLDKLEGKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS+N+ K+ IA AA +V DNDTI+IESGSTCALLAE +CQTKRN+ ++TNSCFI
Sbjct: 61 LNVRLSFNHKTKKEIAALAANMVSDNDTILIESGSTCALLAENICQTKRNVTILTNSCFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANY+R+Y SCQI+LLGG YQ +S+VTVGPL+K+MISLFHV+ FVGTDGF+ LGFMG+D
Sbjct: 121 ANYLREYDSCQIVLLGGEYQSSSQVTVGPLMKKMISLFHVSLAFVGTDGFDPKLGFMGRD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
+MRSE + MA+AA+EV+ILTDSSKF++T+LV QL L+ V++VITD+
Sbjct: 181 LMRSEVAQEMANAADEVIILTDSSKFNQTALVEQLPLSTVSQVITDK 227
>ref|ZP_00874716.1| regulatory protein, DeoR [Streptococcus suis 89/1591]
gb|EAP41125.1| regulatory protein, DeoR [Streptococcus suis 89/1591]
Length = 247
Score = 342 bits (878), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 159/229 (69%), Positives = 199/229 (86%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RL++IIQLVSQ +KIDVNSL+EQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MERLDKIIQLVSQHEKIDVNSLAEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LN+R+S+ Y++K+RIA++AA L+ DN+TIMIESGSTCALLAE +C+TKRN+ +ITNS FI
Sbjct: 61 LNIRMSFRYDVKKRIAKEAANLIADNETIMIESGSTCALLAEEICKTKRNVTIITNSYFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANY+RQY SCQIILLGG +Q +S+VTVGPLL +MI FHV++ FVGTDG++ + GF GK+
Sbjct: 121 ANYVRQYDSCQIILLGGEFQKDSQVTVGPLLHKMIQFFHVDKAFVGTDGYDSEHGFTGKN 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+MRSE V+YM+D AE +++LTDSSKF+K V + L+ V +VITD +L
Sbjct: 181 LMRSEVVQYMSDVAENMIVLTDSSKFTKRGTVRRFGLSQVAQVITDTSL 229
>ref|YP_001198072.1| Transcriptional regulator of sugar metabolism [Streptococcus suis
05ZYH33]
gb|ABP89672.1| Transcriptional regulator of sugar metabolism [Streptococcus suis
05ZYH33]
Length = 247
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 158/229 (68%), Positives = 199/229 (86%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RL++IIQLVSQ +KIDVNSL+EQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MERLDKIIQLVSQHEKIDVNSLAEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LN+R+S+ Y++K+RIA++AA L+ DN+TIMIESGSTCALLAE +C+TKRN+ +ITNS FI
Sbjct: 61 LNIRMSFRYDVKKRIAKEAANLIADNETIMIESGSTCALLAEEICKTKRNVTIITNSYFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANY+RQY SCQIILLGG +Q +S+VTVGPLL +MI FHV++ FVGTDG++ + GF GK+
Sbjct: 121 ANYVRQYDSCQIILLGGEFQKDSQVTVGPLLHKMIQFFHVDKAFVGTDGYDSEHGFTGKN 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+MRSE V+YM+D AE +++LTDSSKF+K V + L+ V +VITD ++
Sbjct: 181 LMRSEVVQYMSDVAENMIVLTDSSKFTKRGTVRRFGLSQVAQVITDTSI 229
>ref|YP_001200266.1| Transcriptional regulator of sugar metabolism [Streptococcus suis
98HAH33]
gb|ABP91866.1| Transcriptional regulator of sugar metabolism [Streptococcus suis
98HAH33]
Length = 247
Score = 340 bits (872), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 158/229 (68%), Positives = 198/229 (86%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RL+ IIQLVSQ +KIDVNSL+EQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
Sbjct: 1 MERLDNIIQLVSQHEKIDVNSLAEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LN+R+S+ Y++K+RIA++AA L+ DN+TIMIESGSTCALLAE +C+TKRN+ +ITNS FI
Sbjct: 61 LNIRMSFRYDVKKRIAKEAANLIADNETIMIESGSTCALLAEEICKTKRNVTIITNSYFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANY+RQY SCQIILLGG +Q +S+VTVGPLL +MI FHV++ FVGTDG++ + GF GK+
Sbjct: 121 ANYVRQYDSCQIILLGGEFQKDSQVTVGPLLHKMIQFFHVDKAFVGTDGYDSEHGFTGKN 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+MRSE V+YM+D AE +++LTDSSKF+K V + L+ V +VITD ++
Sbjct: 181 LMRSEVVQYMSDVAENMIVLTDSSKFTKRGTVRRFGLSQVAQVITDTSI 229
>ref|ZP_01834399.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP23-BS72]
gb|EDK82482.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP23-BS72]
Length = 248
Score = 337 bits (865), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 207/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEHEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC+II+LGG +Q +S+VTVGPLLKEMI FHV++ FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ A+++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|YP_001034286.1| Transcriptional repressor of sugar metabolism, GlpR/DeoR family,
putative [Streptococcus sanguinis SK36]
gb|ABN43736.1| Transcriptional repressor of sugar metabolism, GlpR/DeoR family,
putative [Streptococcus sanguinis SK36]
Length = 247
Score = 337 bits (865), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 155/247 (62%), Positives = 211/247 (85%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RL+ I++LVS+ ++IDVN+LS++L VSKVTIRKDLDKLE+KGLLRREHGYAVLNSGDD
Sbjct: 1 MERLDEIVKLVSEFERIDVNTLSDRLKVSKVTIRKDLDKLETKGLLRREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS++Y+ KRRIA++AA++VQDN+TIMIESGSTCALLAE +C+TK+N+K+ITNS FI
Sbjct: 61 LNVRLSFHYDTKRRIAQEAAKIVQDNETIMIESGSTCALLAEEICRTKKNVKIITNSYFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
A+YI+Q SC+IILLGG +Q +S+VTVGPLLKEMI FHV FVGTDG++++LGF GKD
Sbjct: 121 ADYIKQTDSCKIILLGGEFQKDSQVTVGPLLKEMIRFFHVEHAFVGTDGYDENLGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+YM++A++++++LTDSSKF++ +V + + +V+TD+A+ K+ E L A+
Sbjct: 181 LMRSEVVQYMSEASDQMIVLTDSSKFTRKGIVKRFGFKQIAQVVTDKAIPKEAVERLKAA 240
Query: 241 GLVLDFV 247
+ L +
Sbjct: 241 DIKLTLI 247
>ref|YP_815748.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae D39]
ref|ZP_01819450.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP6-BS73]
ref|ZP_02709581.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC1873-00]
ref|ZP_02710493.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC1087-00]
ref|YP_001693775.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae Hungary19A-6]
gb|ABJ54588.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae D39]
gb|EDK77524.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP6-BS73]
gb|ACA36088.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae Hungary19A-6]
gb|EDT50221.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC1873-00]
gb|EDT91389.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC1087-00]
Length = 248
Score = 337 bits (863), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 207/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC+II+LGG +Q +S+VTVGPLLKEMI FHV++ FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ A+++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|ZP_01829730.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP18-BS74]
gb|EDK69318.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP18-BS74]
Length = 248
Score = 337 bits (863), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 206/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEHEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC+II+LGG +Q +S+VTVGPLLKEMI FHV + FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVRQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ A+++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|NP_357821.1| DEOR-type transcriptional regulator [Streptococcus pneumoniae R6]
gb|AAK99031.1| DEOR-type transcriptional regulator [Streptococcus pneumoniae R6]
Length = 264
Score = 336 bits (862), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 207/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 17 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 76
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 77 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 136
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC+II+LGG +Q +S+VTVGPLLKEMI FHV++ FVGTDG++K++GF GKD
Sbjct: 137 ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD 196
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ A+++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 197 LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 256
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 257 GIMVKVVS 264
>ref|ZP_01822470.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP9-BS68]
ref|ZP_01824388.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP11-BS70]
ref|ZP_01832422.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP19-BS75]
ref|ZP_02713922.1| transcriptional regulator, DeoR family [Streptococcus pneumoniae
SP195]
ref|ZP_02718086.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC3059-06]
ref|ZP_02722208.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae MLV-016]
gb|EDK64284.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP11-BS70]
gb|EDK71683.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP19-BS75]
gb|EDK79568.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP9-BS68]
gb|EDT92292.1| transcriptional regulator, DeoR family [Streptococcus pneumoniae
SP195]
gb|EDT96677.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC3059-06]
gb|EDT98421.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae MLV-016]
Length = 248
Score = 336 bits (862), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 206/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC+II+LGG +Q +S+VTVGPLLKEMI FHV + FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVRQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ A+++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|ZP_01826614.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP14-BS69]
gb|EDK67088.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP14-BS69]
Length = 248
Score = 336 bits (861), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 159/248 (64%), Positives = 207/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC++I+LGG +Q +S+VTVGPLLKEMI FHV++ FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRVIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ A+++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|YP_001451062.1| transcription regulator, DeoR family [Streptococcus gordonii str.
Challis substr. CH1]
gb|ABV09945.1| transcription regulator, DeoR family [Streptococcus gordonii str.
Challis substr. CH1]
Length = 249
Score = 335 bits (860), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 158/242 (65%), Positives = 202/242 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RL++I++LVS+ +KIDVN+LSE+L VSKVTIRKDLDKLE KGLLRREHGYAVLNSGDD
Sbjct: 3 MERLDKIVKLVSEYEKIDVNTLSEKLQVSKVTIRKDLDKLELKGLLRREHGYAVLNSGDD 62
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS+NY+ KRRIA+K AEL+ DN+TI+IESGSTCALLAE +C++KRN+K++TNS FI
Sbjct: 63 LNVRLSFNYDTKRRIAQKTAELISDNETILIESGSTCALLAEEICRSKRNVKIVTNSYFI 122
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
A+Y+R Y SC+IILLGG +Q +S+VTVGPLLKEMI FHV FVGTDG++++LGF GKD
Sbjct: 123 ADYVRNYDSCKIILLGGEFQKDSQVTVGPLLKEMIHYFHVKYAFVGTDGYDEELGFTGKD 182
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+YM++ A++VVILTDSSKF K +V + L V++V+TD + E L +
Sbjct: 183 LMRSEVVQYMSEVADQVVILTDSSKFGKKGIVKRFGLKQVSQVVTDTGISNVAVEQLEKA 242
Query: 241 GL 242
+
Sbjct: 243 SI 244
>ref|ZP_02716344.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC0288-04]
gb|EDT94096.1| putative HTH-type transcriptional regulator YciT [Streptococcus
pneumoniae CDC0288-04]
Length = 248
Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/248 (64%), Positives = 206/248 (83%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY IKR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC+II+LGG +Q +S+VTVGPLLKEMI FHV++ FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ +++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAVSDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|NP_344785.1| transcriptional regulator, DeoR family [Streptococcus pneumoniae
TIGR4]
ref|ZP_01409396.1| hypothetical protein SpneT_02000061 [Streptococcus pneumoniae
TIGR4]
ref|ZP_01816968.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP3-BS71]
gb|AAK74425.1| transcriptional regulator, DeoR family [Streptococcus pneumoniae
TIGR4]
gb|EDK74908.1| transcriptional regulator, DeoR family protein [Streptococcus
pneumoniae SP3-BS71]
Length = 248
Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/248 (63%), Positives = 204/248 (82%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 1 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY KR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 61 LNVRLSINYETKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC++I+LGG +Q +S+VTVGPLLKEMI FHV + FVGTDG++K++GF GKD
Sbjct: 121 ANFVRAYDSCRVIVLGGEFQKDSQVTVGPLLKEMIQTFHVCQAFVGTDGYDKEMGFTGKD 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ +++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 181 LMRSEVVQYISAVSDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 240
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 241 GIMVKVVS 248
>ref|YP_001834974.1| transcriptional regulator, DeoR family [Streptococcus pneumoniae
CGSP14]
gb|ACB89509.1| transcriptional regulator, DeoR family [Streptococcus pneumoniae
CGSP14]
Length = 264
Score = 330 bits (846), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 157/248 (63%), Positives = 204/248 (82%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M RLE+II+LVS+ +KIDVN+LSE+L+VSKVTIRKDLDKLESKGLL REHGYAVLNSGDD
Sbjct: 17 MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD 76
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
LNVRLS NY KR+I ++A +LV DN+TIMIESGSTCALLAE +C+ KRN+ ++TNS FI
Sbjct: 77 LNVRLSINYETKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI 136
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
AN++R Y SC++I+LGG +Q +S+VTVGPLLKEMI FHV + FVGTDG++K++GF GKD
Sbjct: 137 ANFVRAYDSCRVIVLGGEFQKDSQVTVGPLLKEMIQTFHVCQAFVGTDGYDKEMGFTGKD 196
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+MRSE V+Y++ +++V++LTDSSKF K V + +L+ V VITD+ L KQ L +
Sbjct: 197 LMRSEVVQYISAVSDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA 256
Query: 241 GLVLDFVS 248
G+++ VS
Sbjct: 257 GIMVKVVS 264
>ref|YP_808813.1| Transcriptional regulator of sugar metabolism [Lactococcus lactis
subsp. cremoris SK11]
gb|ABJ72391.1| Transcriptional regulator of sugar metabolism [Lactococcus lactis
subsp. cremoris SK11]
Length = 248
Score = 271 bits (692), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 128/237 (54%), Positives = 182/237 (76%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M+R + II++VS KKI+V LS+ L+VS VTIRKDLDKLE KG++ R+HG+A++N+ DD
Sbjct: 1 MSRSDEIIRIVSDYKKIEVTQLSQLLEVSNVTIRKDLDKLEEKGIINRQHGFALINNTDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
+N RL+ NY++KR+IA KAAE + D DT+MIESGSTCALLAE L ++N+ +ITNS FI
Sbjct: 61 INFRLAKNYDLKRKIAIKAAENILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIR+ S ++ILLGG YQ NS+V VGPL+K+++ F+V+++F+G DGF+ GF D
Sbjct: 121 ANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDKFYVDKLFIGIDGFDPIRGFRSND 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ RSE + MA AA+EV+ILTD+SKF + V S ++++V TD+A+ K+T+ +L
Sbjct: 181 LARSEAIHVMAAAAKEVIILTDASKFKQNGTVTCFSFPEISQVFTDKAISKETEAIL 237
>ref|NP_786016.1| transcription regulator [Lactobacillus plantarum WCFS1]
emb|CAD64867.1| transcription regulator [Lactobacillus plantarum WCFS1]
Length = 251
Score = 270 bits (690), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 181/236 (76%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E+++++V+Q+KK++VN L+ L+VSKVTIRKDL +LE++GLL+R+HG+A++N+ ++LN
Sbjct: 4 RNEQLLEIVNQRKKVEVNELASLLEVSKVTIRKDLTELENRGLLQRQHGFAIINNPNNLN 63
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
RL+ NY+IK +IAE AA LVQDN+TIMIESGSTCALLAE L ++ +++ +IT S FIAN
Sbjct: 64 FRLAQNYDIKHKIAEAAATLVQDNETIMIESGSTCALLAEELGKSGKHVTIITISFFIAN 123
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
Y+R Y + + LGG YQ +++V VGPL K M++ FH ++F+G DGF+++ GF G D+M
Sbjct: 124 YVRNYDNITVYTLGGQYQSDAQVAVGPLTKTMLANFHTEKLFLGIDGFDRNYGFYGNDIM 183
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
R++ V MAD A++ ILTDSSKF TS VHQL V+ VITD L K+ +L+
Sbjct: 184 RTDTVHAMADNADKTCILTDSSKFELTSTVHQLPFQQVDTVITDNQLSKEAHRVLN 239
>ref|NP_266945.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
gb|AAK04887.1|AE006312_7 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403]
Length = 247
Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 184/237 (77%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
M+R + II++VS KKI+VN LS+ L+VS VTIRKDLDKLE KG++ R+HG+A++N+ DD
Sbjct: 1 MSRSDEIIRIVSDYKKIEVNQLSQLLNVSNVTIRKDLDKLEEKGIINRQHGFALINNTDD 60
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
+N RL+ NY++KR+IA KAAE + D DT+MIESGSTCALLAE L ++N+ +ITNS FI
Sbjct: 61 INFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFI 120
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
ANYIR+ S ++ILLGG YQ NS+V VGPL+K+++ F+V+++F+G DGF+ GF D
Sbjct: 121 ANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPVRGFRSND 180
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ RSE + MA AA+EV+ILTD+SKF++ V S ++++V TD++++ +Q++L
Sbjct: 181 LARSEAIHVMAAAAKEVIILTDASKFNQNGTVTCFSFPEISQVFTDKSINAGSQKIL 237
>ref|YP_001307842.1| transcriptional regulator, DeoR family [Clostridium beijerinckii
NCIMB 8052]
gb|ABR32886.1| transcriptional regulator, DeoR family [Clostridium beijerinckii
NCIMB 8052]
Length = 250
Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 123/247 (49%), Positives = 188/247 (76%), Gaps = 1/247 (0%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R +++++V++ K+I+V+ LSE L+VS+VTIRKDL LE KGLL+REHGYAV+ S DD+
Sbjct: 3 SRYTKLLEIVNENKRIEVSKLSELLNVSQVTIRKDLGALEEKGLLKREHGYAVMTSSDDI 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
N RL++NY+IKR+IA+ A++LV D +T+MIESGS+CALLAE L K++I VITNS FIA
Sbjct: 63 NSRLAFNYDIKRKIAQLASKLVNDGETVMIESGSSCALLAEELAYNKKDITVITNSTFIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
NYIR+ + +++LLGG YQP S+V+VGPL ++ + F V+++F+GTDG+N +GF GK++
Sbjct: 123 NYIRE-GNAKVVLLGGDYQPESQVSVGPLTRKCVKDFFVDKLFIGTDGYNSKIGFTGKNL 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
MR+E V+ MA+++ +++ILT+SSKFS+ +V Q +++ + TD + + E L
Sbjct: 182 MRTETVKAMAESSNKIIILTESSKFSERGVVSQFKAEEISYLFTDTNIPEDVLESLKKEK 241
Query: 242 LVLDFVS 248
+ + VS
Sbjct: 242 VDVQMVS 248
>ref|YP_001786590.1| putative HTH-type transcriptional regulator YciT [Clostridium
botulinum A3 str. Loch Maree]
gb|ACA56601.1| putative HTH-type transcriptional regulator YciT [Clostridium
botulinum A3 str. Loch Maree]
Length = 253
Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 182/237 (76%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
++R +I++L+++ KKI+V LSE L+VS+VTIRKDL +LE+KGL+ REHG+A LNS DD
Sbjct: 5 LDRHTKILELLTENKKIEVTKLSELLNVSQVTIRKDLIQLENKGLIVREHGFATLNSSDD 64
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
+N RL+Y+Y IKRRIA+ A E V D +TIMIESGS CALLA + QTK++I +ITNS FI
Sbjct: 65 INNRLAYHYEIKRRIAKLATESVMDGETIMIESGSCCALLALEIAQTKKDITIITNSAFI 124
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
A+YIR+ S+ +IILLGG YQ S+V VGP+ ++ + F V+++F+GTDGF++ GF GKD
Sbjct: 125 ADYIRKLSNTRIILLGGEYQNESQVMVGPITRKCVESFFVDKLFIGTDGFSEVSGFTGKD 184
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
MRSE VR MA A V+I+T+S+KFS+ +V+ ++ +++ V+TD + K+ +E L
Sbjct: 185 YMRSETVRDMAKQANHVIIVTESTKFSQKGVVNLIATDEISSVVTDVNIPKECEEYL 241
>ref|ZP_02427521.1| hypothetical protein CLORAM_00908 [Clostridium ramosum DSM 1402]
gb|EDS18912.1| hypothetical protein CLORAM_00908 [Clostridium ramosum DSM 1402]
Length = 253
Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/242 (48%), Positives = 176/242 (72%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R +I++L+++ KK++V LS+ L VS+VTIRKDL +LE+ GL+ REHG+A LNS DD
Sbjct: 5 LARHTKILELITENKKMEVTKLSQLLSVSQVTIRKDLIQLENSGLIVREHGFATLNSSDD 64
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
+N RL+Y+Y+IK+RIA+ A E ++D +T+MIESGS CAL+A + QTK+++ +ITNS FI
Sbjct: 65 INNRLAYHYDIKQRIAKLAVESIEDGETVMIESGSCCALVALEIAQTKKDVTIITNSAFI 124
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
A+YIR+ + +IILLGG YQ S+V VGP+ K+ + F V+++F+GTDGF + GF G D
Sbjct: 125 ADYIRKVAKIRIILLGGEYQNESQVMVGPITKKCVESFFVDKLFIGTDGFTETSGFTGND 184
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
MRSE VR MA A++V+I+TDS KF + +V + A++ ++TD + + + L
Sbjct: 185 YMRSETVRDMAKQADKVIIVTDSFKFLQKGVVTLIPTAEIACIVTDTHIPIECENYLLDH 244
Query: 241 GL 242
G+
Sbjct: 245 GI 246
>ref|ZP_02440142.1| hypothetical protein CLOSS21_02634 [Clostridium sp. SS2/1]
gb|EDS20997.1| hypothetical protein CLOSS21_02634 [Clostridium sp. SS2/1]
Length = 252
Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 177/249 (71%), Gaps = 2/249 (0%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R +I+++V+QKKK++V +LS+ L+VS+VTIRKDLD LE L REHGYA + + D+
Sbjct: 3 DRQTKILEIVNQKKKVEVATLSQMLEVSQVTIRKDLDALEELNFLTREHGYATMKNMSDI 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ R+++ Y K+RIAEKA+E++ D +TIM+ESGS+CALL + L +TK++I VITNS +IA
Sbjct: 63 SNRMAFCYETKQRIAEKASEIISDGETIMVESGSSCALLVKYLSETKKDITVITNSSYIA 122
Query: 122 NYIRQYSS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+IR+ ++I+LGG YQ +EV VGPL+K F+V+++F+GTDG+ +GF
Sbjct: 123 RFIRETEGGVTKVIVLGGEYQKEAEVMVGPLVKTCAEAFYVDKLFMGTDGYIPGIGFTSG 182
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
DM+R+E + MAD+ +ILTDSSKFS+ +V Q L D+N V TD + + ++ +
Sbjct: 183 DMLRAEAAKSMADSTRNSIILTDSSKFSEHGVVMQCRLKDINMVFTDDQVPLEAKDAMEQ 242
Query: 240 SGLVLDFVS 248
+G++++ V
Sbjct: 243 NGIIVETVP 251
>ref|ZP_02948823.1| putative HTH-type transcriptional regulator YciT [Clostridium
butyricum 5521]
gb|EDT76192.1| putative HTH-type transcriptional regulator YciT [Clostridium
butyricum 5521]
Length = 249
Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 167/236 (70%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
NR +I++L+++ KK++V LSE VS+VTIRKDL LE G + REHGYA LN DD+
Sbjct: 3 NRHTQILELLTKNKKMEVTELSEIFQVSQVTIRKDLGLLEDNGFIVREHGYATLNDSDDI 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
N RL+Y Y+IKR+IA+ A + +++ +TIMIESGS CAL+A + +TK++I +ITNS FIA
Sbjct: 63 NNRLAYRYDIKRKIAKLAVDTIKNGETIMIESGSCCALVALEIAKTKKDITLITNSAFIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
NYIR+ S +I+LLGG YQ S+V VGP+ + F V+++F+G DGF K+ GF G D
Sbjct: 123 NYIRKEGSIRIVLLGGEYQNESQVMVGPMTRRCAEAFFVDKLFIGADGFRKESGFTGNDY 182
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
MRSE V+ MA A +V+I+TDS+KF ++ +V+ ++ VN + TD + +E L
Sbjct: 183 MRSETVKDMARQASQVIIVTDSAKFHQSGVVNLMNTECVNSIYTDSDIPDDIEEYL 238
>ref|ZP_02419038.1| hypothetical protein ANACAC_01623 [Anaerostipes caccae DSM 14662]
gb|EDR98000.1| hypothetical protein ANACAC_01623 [Anaerostipes caccae DSM 14662]
Length = 247
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 180/245 (73%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
NR +I++L++QK KI+V+ LSEQL VS+VT+RKDLD+LE+KG+++REHG+A+L S DD+
Sbjct: 3 NRTNKILELLTQKNKIEVSQLSEQLGVSQVTVRKDLDELENKGIIKREHGFALLCSTDDI 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
N R++Y+Y KR+IA+KAAEL+ D DT+MIESGS CALLA+ L +K+++ +ITNS FIA
Sbjct: 63 NGRIAYHYEAKRKIAKKAAELICDGDTVMIESGSCCALLADELASSKKDLTIITNSAFIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
++IR S+ QIILLGG YQ +S+V VGP+++ + F V+ F+GTDG+ GF +D
Sbjct: 123 DHIRGKSNFQIILLGGIYQQDSQVMVGPMIRPCVENFLVDLFFIGTDGYTPKAGFTNRDQ 182
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
MR++ VR MA A +VV+LT+S KFSK +V V VITD + + ++ L + G
Sbjct: 183 MRAQAVRDMALQAGQVVVLTESDKFSKHGIVPLNLKEQVKTVITDDQISEASKSELESKG 242
Query: 242 LVLDF 246
+ + F
Sbjct: 243 IKVTF 247
>ref|ZP_02432279.1| hypothetical protein CLOSCI_02524 [Clostridium scindens ATCC 35704]
gb|EDS06407.1| hypothetical protein CLOSCI_02524 [Clostridium scindens ATCC 35704]
Length = 250
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R ++ V + K +VN+L+E L SKVT+RKDLD L +GLL+RE GYAV N D+
Sbjct: 6 RHAALLDYVMRNGKTEVNTLAEFLQTSKVTVRKDLDYLSERGLLKRERGYAVPNDPSDIY 65
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
R+S +Y K+RIA KAA VQD +T++IESGSTC L A L + ++NI +ITNS ++A+
Sbjct: 66 YRMSLHYETKQRIARKAATYVQDGETLIIESGSTCTLFAYELAKIRQNITIITNSMYLAS 125
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
Y++ +++ QIILLGG QP + +GPL KE + FHV+++F GTDG+++ GF G D+
Sbjct: 126 YVKDHTNIQIILLGGMLQPYGQSLIGPLTKEAVKAFHVDKIFTGTDGYSRTFGFTGDDLS 185
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASGL 242
RS+ + M D A+ +L S KF++ V ++L DV+ VITD + + ++ L+ G+
Sbjct: 186 RSDTLNAMTDCADHTYVLAGSEKFTRPGSVSFVALKDVHEVITDDGIPAEEKDYLTKQGI 245
Query: 243 VL 244
++
Sbjct: 246 IV 247
>ref|ZP_02867223.1| hypothetical protein CLOSPI_01029 [Clostridium spiroforme DSM 1552]
gb|EDS75201.1| hypothetical protein CLOSPI_01029 [Clostridium spiroforme DSM 1552]
Length = 249
Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 168/236 (71%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R +I+ L+++ KK++V LSE L+VS+VTIRKDL LE+ G++ REHGYA LN DD+N
Sbjct: 4 RQSQILDLLAKNKKMEVTKLSELLNVSQVTIRKDLVILENSGIIVREHGYAKLNESDDIN 63
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
RL+ +Y K++IA+ A E +++ +T+MIESGS CAL+A + ++K+++ +ITNS FIA+
Sbjct: 64 NRLARHYETKQKIAKLAVESIENGETVMIESGSCCALVAMEIARSKKDVTLITNSAFIAD 123
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
YIR+ S ++ILLGG YQ S+V VGPL ++ + F V+++F+GTDGF + GF G D M
Sbjct: 124 YIRKIGSVKVILLGGEYQNESQVMVGPLTRKCVEAFFVDKLFIGTDGFTIETGFTGNDYM 183
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
RSE V+ MA A +V+I+TDS KFS+ +V+ + + V V TD + ++ L+
Sbjct: 184 RSEAVKDMAKQASQVMIVTDSDKFSQKGVVNLIEIEKVACVYTDDKIPSIIEDYLN 239
>ref|YP_001437672.1| hypothetical protein ESA_01582 [Enterobacter sakazakii ATCC
BAA-894]
gb|ABU76836.1| hypothetical protein ESA_01582 [Enterobacter sakazakii ATCC
BAA-894]
Length = 266
Score = 213 bits (543), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 167/250 (66%), Gaps = 8/250 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+
Sbjct: 18 SRQQIILQMVIDRGRMSVAELAKITGVSEVTIRQDLNLLEKQSYLRRTHGFAVPLDSDDV 77
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ N+ +KRR+A+ A LV D +T+ IE+GST ALLA L + K+ I +IT S FIA
Sbjct: 78 ETRMMNNFALKRRLADFACSLVNDGETVFIENGSTNALLARALAEQKK-ITLITVSSFIA 136
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ +SC+IILLGG YQ SE VGPL ++ IS H ++ F+G DG++ + GF G+DM
Sbjct: 137 HLLKE-TSCEIILLGGIYQKKSETMVGPLTRQYISQVHFSKAFIGIDGWSPETGFTGRDM 195
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLS 238
MR++ V + + E +ILTDSSKF VH +L V NRVITD L++ +++ LS
Sbjct: 196 MRADVVNAVLEKGSEAIILTDSSKFGA---VHPYTLGPVSRFNRVITDDGLNEASRDALS 252
Query: 239 ASGLVLDFVS 248
ASGL LD +S
Sbjct: 253 ASGLTLDIIS 262
>ref|YP_001033040.1| transcriptional regulator, DeoR family [Lactococcus lactis subsp.
cremoris MG1363]
emb|CAL98339.1| transcriptional regulator, DeoR family [Lactococcus lactis subsp.
cremoris MG1363]
Length = 194
Score = 206 bits (525), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 141/184 (76%)
Query: 54 VLNSGDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKV 113
++N+ DD+N RL+ NY++KR+IA KAAE + D DT+MIESGSTCALLAE L ++NI +
Sbjct: 1 MINNTDDINFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNITI 60
Query: 114 ITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
ITNS FIANYIR+ S ++ILLGG YQ NS+V VGPL+K+++ F+V+++F+G DGF+
Sbjct: 61 ITNSVFIANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPV 120
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
GF D+ RSE + MA AA+EVVILTD+SKF++ V S ++++V TD++++ ++
Sbjct: 121 RGFRSNDLARSEAIHVMAAAAKEVVILTDASKFNQNGTVTCFSFPEISQVFTDKSINAES 180
Query: 234 QELL 237
Q++L
Sbjct: 181 QKIL 184
>ref|YP_540565.1| putative DEOR-type transcriptional regulator [Escherichia coli
UTI89]
gb|ABE07034.1| putative DEOR-type transcriptional regulator [Escherichia coli
UTI89]
Length = 249
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 148/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE TVGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESTVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|YP_216686.1| putative regulatory protein, deoR family [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gb|AAX65605.1| putative regulatory protein, deoR family [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
Length = 250
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 156/246 (63%), Gaps = 2/246 (0%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+
Sbjct: 3 SRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KRR+AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA
Sbjct: 63 ETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DM
Sbjct: 122 HLLKE-TPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
MRS+ V + + E ++LTDSSKF L+ ++RVITD + Q L +G
Sbjct: 181 MRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSRLHRVITDSKISASDQMQLEHAG 240
Query: 242 LVLDFV 247
L+++ +
Sbjct: 241 LLVNVI 246
>ref|NP_455793.1| putative regulatory protein [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
ref|NP_460663.1| putative regulatory protein [Salmonella typhimurium LT2]
ref|NP_805395.1| putative regulatory protein [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
ref|YP_001587779.1| hypothetical protein SPAB_01548 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
ref|ZP_02339427.1| hypothetical protein Sentent_11281 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
ref|ZP_02350027.1| hypothetical protein Sententeri_09189 [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
ref|ZP_02560081.1| hypothetical protein Sente_07684 [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
ref|ZP_02574844.1| hypothetical protein Sententer_01000028_0100020037 [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
ref|ZP_02646206.1| hypothetical protein Senterenterica_11317 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
ref|ZP_02649753.1| hypothetical protein Sententeric_01995 [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
ref|ZP_02660905.1| hypothetical protein Senteenterica_06633 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
ref|ZP_02666207.1| hypothetical protein Senterienterica_06581 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
ref|ZP_02673903.1| hypothetical protein Sentericenterica_18546 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
ref|ZP_02678040.1| hypothetical protein Sentericaenterica_10335 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
ref|ZP_02682055.1| hypothetical protein Salmentericaenterica_03230 [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
ref|ZP_02707447.1| hypothetical protein Salmoentericaenterica_27569 [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
pir||AH0655 probable regulatory protein STY1347 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gb|AAL20622.1| putative deoR family regulatory protein [Salmonella typhimurium
LT2]
emb|CAD08427.1| putative regulatory protein [Salmonella enterica subsp. enterica
serovar Typhi]
gb|AAO69244.1| putative regulatory protein [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
gb|ABX66946.1| hypothetical protein SPAB_01548 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 250
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 157/249 (63%), Gaps = 8/249 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+
Sbjct: 3 SRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KRR+AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA
Sbjct: 63 ETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DM
Sbjct: 122 HLLKE-TPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLS 238
MRS+ V + + E ++LTDSSKF VH L + +RVITD + Q L
Sbjct: 181 MRSDVVNAVLEKGSEAIVLTDSSKF---GCVHPYPLGPLSRFHRVITDSKISASDQMQLE 237
Query: 239 ASGLVLDFV 247
+GL+++ +
Sbjct: 238 HAGLLVNVI 246
>ref|ZP_02343553.1| hypothetical protein Sentente_04768 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
ref|ZP_02831520.1| hypothetical protein Salentericaenterica_09038 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
Length = 250
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 157/249 (63%), Gaps = 8/249 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+
Sbjct: 3 SRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KRR+AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA
Sbjct: 63 ETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DM
Sbjct: 122 HLLKE-TPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLS 238
MRS+ V + + E ++LTDSSKF VH L + +RVITD + Q L
Sbjct: 181 MRSDVVNAVLEKGSEAIVLTDSSKF---GCVHPYPLGPLSRFHRVITDSRISASDQMQLE 237
Query: 239 ASGLVLDFV 247
+GL+++ +
Sbjct: 238 HAGLLVNVI 246
>ref|ZP_00832913.1| COG1349: Transcriptional regulators of sugar metabolism [Yersinia
intermedia ATCC 29909]
Length = 248
Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 168/252 (66%), Gaps = 9/252 (3%)
Query: 1 MNRLERII-QLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN ++II QLV+ ++++ V+ L+++ VS+VTIR+DL++LES+GLL+R HG AV D
Sbjct: 1 MNPRQQIILQLVNDRQRVSVSELAQETQVSEVTIRQDLNQLESRGLLKRVHGSAVALESD 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D++VR+ ++ +K+++A AA LV + +T+ +ESGS+ ALLA L Q + I ++T S +
Sbjct: 61 DVDVRMMTHFAMKQKLANHAASLVNEGETVFVESGSSNALLAHHLAQ-RPGITLVTVSGY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA +++ SSC++ILLGG YQ S+ VGPL + + H ++ F+G DG+ D GF G+
Sbjct: 120 IARQLKE-SSCEVILLGGIYQKKSDSMVGPLTQLCLRHVHFSKAFIGIDGYQVDTGFTGR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQ---LSLADVNRVITDQALDKQTQEL 236
DM+R++ + + E +IL D+SKF + VHQ + L+ +NRVITD L Q+
Sbjct: 179 DMLRADVINSVLAKGAENIILADASKFGQ---VHQNSLMPLSSINRVITDNRLPAGYQQQ 235
Query: 237 LSASGLVLDFVS 248
L A G+ +D +S
Sbjct: 236 LMAQGIQVDILS 247
>ref|YP_408208.1| putative DEOR-type transcriptional regulator [Shigella boydii
Sb227]
ref|YP_001880119.1| transcriptional regulator, DeoR family [Shigella boydii CDC
3083-94]
gb|ABB66380.1| putative DEOR-type transcriptional regulator [Shigella boydii
Sb227]
gb|ACD09420.1| transcriptional regulator, DeoR family [Shigella boydii CDC
3083-94]
Length = 249
Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 148/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + EV++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEVIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|ZP_02696760.1| hypothetical protein Saentericaenterica_01955 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
Length = 250
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 156/249 (62%), Gaps = 8/249 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+
Sbjct: 3 SRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KRR+AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA
Sbjct: 63 ETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DM
Sbjct: 122 HLLKE-TPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLS 238
MRS+ V + E ++LTDSSKF VH L + +RVITD + Q L
Sbjct: 181 MRSDVVNAVLGKGSEAIVLTDSSKF---GCVHPYPLGPLSRFHRVITDSQISASDQMQLE 237
Query: 239 ASGLVLDFV 247
+GL+++ +
Sbjct: 238 HAGLLVNVI 246
>ref|YP_150445.1| putative regulatory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gb|AAV77133.1| putative regulatory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
Length = 250
Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 157/249 (63%), Gaps = 8/249 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+
Sbjct: 3 SRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KRR+AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA
Sbjct: 63 ETRMMTNYMLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DM
Sbjct: 122 HLLKE-TPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLS 238
MRS+ V + + E ++LTDSSKF VH L + +RVITD + Q L
Sbjct: 181 MRSDVVNAVLEKGSEAIVLTDSSKF---GCVHPYPLGPLSRFHRVITDSRISASDQMQLE 237
Query: 239 ASGLVLDFV 247
+GL+++ +
Sbjct: 238 HAGLLVNVI 246
>ref|YP_001462584.1| transcriptional regulator, DeoR family [Escherichia coli E24377A]
gb|ABV18796.1| transcriptional regulator, DeoR family [Escherichia coli E24377A]
Length = 249
Score = 194 bits (492), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 147/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKA-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|YP_669249.1| putative regulatory protein YciT, DeoR family [Escherichia coli
536]
ref|YP_852456.1| putative DEOR-type transcriptional regulator [Escherichia coli APEC
O1]
gb|ABG69348.1| putative regulatory protein YciT, DeoR family [Escherichia coli
536]
gb|ABJ00742.1| putative DEOR-type transcriptional regulator [Escherichia coli APEC
O1]
Length = 249
Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 147/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|NP_287913.1| putative DEOR-type transcriptional regulator [Escherichia coli
O157:H7 EDL933]
ref|NP_309884.1| putative DEOR-type transcriptional regulator [Escherichia coli
O157:H7 str. Sakai]
ref|NP_836977.1| putative DEOR-type transcriptional regulator [Shigella flexneri 2a
str. 2457T]
ref|YP_310763.1| putative DEOR-type transcriptional regulator [Shigella sonnei
Ss046]
ref|YP_402998.1| putative DEOR-type transcriptional regulator [Shigella dysenteriae
Sd197]
ref|YP_688807.1| putative DEOR-type transcriptional regulator [Shigella flexneri 5
str. 8401]
ref|YP_001458110.1| transcriptional regulator, DeoR family [Escherichia coli HS]
ref|ZP_02743510.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4045]
ref|ZP_02752659.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4206]
ref|ZP_02770295.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4115]
ref|ZP_02774107.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4113]
ref|ZP_02780963.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4401]
ref|ZP_02787719.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4501]
ref|ZP_02794364.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4486]
ref|ZP_02800107.1| transcriptional regulator, DeoR family [Escherichia coli O157:H7
str. EC4196]
ref|ZP_02809040.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4076]
ref|ZP_02813405.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC869]
ref|ZP_02820319.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC4042]
ref|ZP_02824592.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC508]
ref|YP_001725304.1| transcriptional regulator, DeoR family [Escherichia coli ATCC 8739]
ref|YP_001743898.1| transcriptional regulator, DeoR family [Escherichia coli SMS-3-5]
gb|AAG56529.1|AE005378_8 putative DEOR-type transcriptional regulator [Escherichia coli
O157:H7 EDL933]
dbj|BAB35280.1| putative DEOR-type transcriptional regulator [Escherichia coli
O157:H7 str. Sakai]
gb|AAP16784.1| putative DEOR-type transcriptional regulator [Shigella flexneri 2a
str. 2457T]
gb|AAZ88528.1| putative DEOR-type transcriptional regulator [Shigella sonnei
Ss046]
gb|ABB61507.1| putative DEOR-type transcriptional regulator [Shigella dysenteriae
Sd197]
gb|ABF03502.1| putative DEOR-type transcriptional regulator [Shigella flexneri 5
str. 8401]
gb|ABV05727.1| transcriptional regulator, DeoR family [Escherichia coli HS]
gb|ACA77977.1| transcriptional regulator, DeoR family [Escherichia coli ATCC 8739]
gb|ACB19772.1| transcriptional regulator, DeoR family [Escherichia coli SMS-3-5]
gb|EDU33078.1| transcriptional regulator, DeoR family [Escherichia coli O157:H7
str. EC4196]
Length = 249
Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 147/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|NP_415800.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K-12 substr. MG1655]
ref|AP_001910.1| predicted DNA-binding transcriptional regulator [Escherichia coli
W3110]
ref|YP_001730283.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K-12 substr. DH10B]
sp|P76034.1|YCIT_ECOLI Uncharacterized HTH-type transcriptional regulator yciT
gb|AAC74366.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K-12 substr. MG1655]
dbj|BAA14838.2| predicted DNA-binding transcriptional regulator [Escherichia coli
W3110]
gb|ACB02505.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K-12 substr. DH10B]
Length = 249
Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 147/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|YP_001176910.1| transcriptional regulator, DeoR family [Enterobacter sp. 638]
gb|ABP60859.1| transcriptional regulator, DeoR family [Enterobacter sp. 638]
Length = 253
Score = 193 bits (491), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 162/250 (64%), Gaps = 8/250 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HGYAV +D+
Sbjct: 6 SRQQLILQMVIDKGRMSVVELAKTTGVSEVTIRQDLNLLEKQSYLRRAHGYAVPLDSEDV 65
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ N+ +KR +AE AA LV + +T+ IE+GS+ ALLA L + K ++ +IT S +IA
Sbjct: 66 ETRMMNNFALKRELAEFAASLVNNGETVFIENGSSNALLARTLAEQK-DVTIITVSSYIA 124
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +++ + C++ILLGG YQ SE VGPL ++ + H ++ F+G DG+ + GF G+DM
Sbjct: 125 HLLKE-TPCEVILLGGIYQKKSESMVGPLTRQYVQQVHFSKAFIGIDGWQAETGFTGRDM 183
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLS 238
MRS+ V + + E ++LTDSSKF VH ++ V +RVITD+ L + +E L
Sbjct: 184 MRSDVVNAVLEKGCEAIVLTDSSKFGA---VHPYTMGPVSRFSRVITDERLSEAHREQLL 240
Query: 239 ASGLVLDFVS 248
+ GL++D V+
Sbjct: 241 SDGLIVDIVN 250
>ref|NP_707193.1| putative DEOR-type transcriptional regulator [Shigella flexneri 2a
str. 301]
gb|AAN42900.1| putative DEOR-type transcriptional regulator [Shigella flexneri 2a
str. 301]
Length = 249
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 146/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKESPAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|ZP_00824253.1| COG1349: Transcriptional regulators of sugar metabolism [Yersinia
mollaretii ATCC 43969]
Length = 248
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 163/252 (64%), Gaps = 9/252 (3%)
Query: 1 MN-RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN R + I+QLV+ +K+I VN L++ VS+VTIR+DL+ LE +GLL+R HG A D
Sbjct: 1 MNPRQQAILQLVNDRKRISVNELAQVTHVSEVTIRQDLNVLEKRGLLKRVHGSAAALESD 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D++VR+ ++ +K+++A AA LV D +T+ IESGS+ ALLA L Q + I ++T S +
Sbjct: 61 DVDVRMMTHFAMKQKLAHYAASLVNDGETVFIESGSSNALLAHHLAQ-RPGITLVTVSGY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA ++ S+C++ILLGG YQ S+ VGPL + + H ++ F+G DG+ D GF G+
Sbjct: 120 IARQLKD-SACEVILLGGIYQKKSDSMVGPLTQLCLRHVHFSKAFIGIDGYQIDTGFTGR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLAD---VNRVITDQALDKQTQEL 236
D++R+E + + E +IL+D+SKF LVHQ LA ++RVITD L Q+
Sbjct: 179 DILRAEVINSVLAKGAENIILSDASKF---GLVHQYPLAPLSAISRVITDSRLPADYQQQ 235
Query: 237 LSASGLVLDFVS 248
L A G+ +D +S
Sbjct: 236 LMAEGIQVDILS 247
>ref|ZP_02902817.1| transcriptional regulator, DeoR family [Escherichia albertii
TW07627]
gb|EDS92061.1| transcriptional regulator, DeoR family [Escherichia albertii
TW07627]
Length = 268
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 148/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 22 SRQQTILQMVIDQGQVSVTELAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 81
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ N+ +KR++AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA
Sbjct: 82 ETRMMSNFPLKRQLAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIA 141
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 142 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 200
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E +ILTDSSKF VH S+ V NR+ITD
Sbjct: 201 MRTDVVNAVLEKECEAIILTDSSKFGA---VHSYSIGPVEKFNRIITD 245
>ref|YP_001478872.1| transcriptional regulator, DeoR family [Serratia proteamaculans
568]
gb|ABV41744.1| transcriptional regulator, DeoR family [Serratia proteamaculans
568]
Length = 248
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 157/247 (63%), Gaps = 2/247 (0%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+QLV+ +++I V+ L+ VS+VTIR+DL+ LE + L+R HG A+ DD+
Sbjct: 3 SRQQTILQLVNDRRRISVSDLAAATGVSEVTIRQDLNLLEKRSYLKRVHGSALALESDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ R+ N+ +K+++A+ AA LV D++TI IESGS ALLA + + KR I +IT S +IA
Sbjct: 63 DARMMSNFTLKQKLAQYAASLVNDDETIFIESGSANALLARYIAERKR-ITLITVSHYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
N +++ + C++I+LGG YQ SE VGPL ++ I H ++ F+G DG++ D GF G+DM
Sbjct: 122 NLLKE-TDCEVIVLGGLYQKKSETVVGPLTRQCIQQVHFSKAFIGIDGYHADTGFTGRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
MR++ V + E ++LTDSSKF + V+RVITD L Q L G
Sbjct: 181 MRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLTQQGKVHRVITDSRLSLDYQHQLKRQG 240
Query: 242 LVLDFVS 248
+ LD V+
Sbjct: 241 IQLDIVN 247
>ref|NP_753658.1| Hypothetical transcriptional regulator yciT [Escherichia coli
CFT073]
gb|AAN80220.1|AE016760_79 Hypothetical transcriptional regulator yciT [Escherichia coli
CFT073]
Length = 249
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 146/228 (64%), Gaps = 7/228 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R + I+Q+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+
Sbjct: 3 SRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDV 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
R+ NY +KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N +IT S +IA
Sbjct: 63 ETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNATIITVSSYIA 122
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ + C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DM
Sbjct: 123 HLLKD-APCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDM 181
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
MR++ V + + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 182 MRTDVVNAVLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 226
>ref|ZP_00820635.1| COG1349: Transcriptional regulators of sugar metabolism [Yersinia
bercovieri ATCC 43970]
Length = 248
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 163/252 (64%), Gaps = 9/252 (3%)
Query: 1 MN-RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN R + I+QLV+++++I VN L++ VS+VTIR+DL+ LE +GLL+R HG A D
Sbjct: 1 MNPRQQTILQLVNERQRISVNELAQTTHVSEVTIRQDLNVLEKRGLLKRVHGSAAALESD 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D++VR+ ++ +K+++A AA LV D +TI IESGS+ ALLA L Q + I ++T S +
Sbjct: 61 DVDVRMMTHFAMKQKLANYAASLVNDGETIFIESGSSNALLAHHLAQ-RPEITLVTVSGY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA ++ S+C++ILLGG YQ S+ VGPL + + H ++ F+G DG+ D GF G+
Sbjct: 120 IARQLKD-SACEVILLGGIYQKKSDSMVGPLTQLCLQHVHFSKAFIGIDGYQLDSGFTGR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQ---LSLADVNRVITDQALDKQTQEL 236
D++R+E + + E +IL D+SKF LVHQ LA ++RVITD L Q+
Sbjct: 179 DILRAEVINSVLAKGAENIILADASKF---GLVHQNPLAPLAAISRVITDSRLPAGYQQS 235
Query: 237 LSASGLVLDFVS 248
L A G+ +D +S
Sbjct: 236 LMAEGIQVDILS 247
>ref|YP_001570302.1| hypothetical protein SARI_01258 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gb|ABX21160.1| hypothetical protein SARI_01258 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 240
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 151/241 (62%), Gaps = 8/241 (3%)
Query: 10 LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNY 69
+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+ R+ NY
Sbjct: 1 MVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDVETRMMTNY 60
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSS 129
+KRR+AE AA L+ +++ IE+GS+ ALLA L + K ++ +IT S +IA+ +++ +
Sbjct: 61 TLKRRLAEFAASLISPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIAHLLKE-TP 118
Query: 130 CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRY 189
C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DMMRS+ V
Sbjct: 119 CEVILLGGIYQKKSESMVGPLTRQFIQQVHFSKAFIGIDGWQADTGFTGRDMMRSDVVNA 178
Query: 190 MADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLSASGLVLDF 246
+ + E ++LTDSSKF VH L + +RVITD + Q L +GL+++
Sbjct: 179 VLEKGSEAIVLTDSSKF---GCVHPYPLGPLSRFHRVITDSRISASNQMQLEHNGLLVNV 235
Query: 247 V 247
+
Sbjct: 236 I 236
>ref|ZP_00828068.1| COG1349: Transcriptional regulators of sugar metabolism [Yersinia
frederiksenii ATCC 33641]
Length = 248
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 158/249 (63%), Gaps = 8/249 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + IIQLV+ +++I V+ L++ VS+VTIR+DL+ LE +GLL+R HG AV DD++
Sbjct: 4 RQQSIIQLVNDRQRISVSELAQATQVSEVTIRQDLNLLEKRGLLKRVHGSAVALESDDVD 63
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
VR+ ++ K+++A AA LV D +TI IESGS+ ALLA L Q + I ++T S +IA
Sbjct: 64 VRMMTHFATKQKLANYAASLVNDGETIFIESGSSNALLAHKLAQ-RPGITLVTVSGYIAR 122
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
++ S+C++ILLGG YQ S+ VGPL + + H ++ F+G DG+ GF G+DM+
Sbjct: 123 QLKD-SACEVILLGGIYQKKSDSMVGPLTQLCLRHVHFSKAFIGIDGYQSGAGFTGRDML 181
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQ---LSLADVNRVITDQALDKQTQELLSA 239
R++ + + E +IL D+SKF + VHQ L+ +NRVITD L Q L A
Sbjct: 182 RADVINSVLAKGAENIILADASKFGQ---VHQNPLTPLSSINRVITDNRLPTIYQHQLIA 238
Query: 240 SGLVLDFVS 248
G+ +D +S
Sbjct: 239 QGIQVDILS 247
>ref|YP_001452941.1| hypothetical protein CKO_01368 [Citrobacter koseri ATCC BAA-895]
gb|ABV12505.1| hypothetical protein CKO_01368 [Citrobacter koseri ATCC BAA-895]
Length = 240
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 150/241 (62%), Gaps = 8/241 (3%)
Query: 10 LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNY 69
+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+ R+ NY
Sbjct: 1 MVIDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLDSDDVETRMMTNY 60
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSS 129
+KR +AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA+ +++ +
Sbjct: 61 TLKRELAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIAHLLKE-TP 118
Query: 130 CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRY 189
C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D GF G+DMMRS+ V
Sbjct: 119 CEVILLGGIYQKKSESMVGPLTRQFIQQVHFSKAFIGIDGWQPDTGFTGRDMMRSDVVNA 178
Query: 190 MADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQELLSASGLVLDF 246
+ + E ++LTDSSKF VH +L + +RVITD + Q L +GL ++
Sbjct: 179 VLEKGSEAIVLTDSSKFGA---VHPYTLGPLTRFSRVITDSRISADHQMQLERTGLTVNI 235
Query: 247 V 247
+
Sbjct: 236 I 236
>ref|ZP_00725878.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli F11]
Length = 239
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 141/220 (64%), Gaps = 7/220 (3%)
Query: 10 LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNY 69
+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+ R+ NY
Sbjct: 1 MVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNY 60
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSS 129
+KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA+ ++ +
Sbjct: 61 TLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKD-AP 119
Query: 130 CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRY 189
C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DMMR++ V
Sbjct: 120 CEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNA 179
Query: 190 MADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITD 226
+ + E ++LTDSSKF VH S+ V NRVITD
Sbjct: 180 VLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITD 216
>ref|ZP_00712720.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli B171]
ref|ZP_00718261.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli B7A]
ref|ZP_00724034.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli E110019]
ref|ZP_00730714.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli E22]
ref|ZP_00737307.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli 53638]
ref|ZP_00926050.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli 101-1]
Length = 239
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 10 LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNY 69
+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+ R+ NY
Sbjct: 1 MVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNY 60
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSS 129
+KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA+ ++ +
Sbjct: 61 TLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKD-AP 119
Query: 130 CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRY 189
C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DMMR++ V
Sbjct: 120 CEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNA 179
Query: 190 MADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQAL 229
+ + E ++LTDSSKF VH S+ V NRVITD +
Sbjct: 180 VLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITDSKI 219
>ref|YP_857361.1| putative HTH-type transcriptional regulator YciT [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gb|ABK39680.1| putative HTH-type transcriptional regulator YciT [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 248
Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 156/252 (61%), Gaps = 9/252 (3%)
Query: 1 MN-RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN R + I+ LV Q +K+ V+ LS++ VS+VT+R DL LE +GLL+R HG A+ D
Sbjct: 1 MNPRHQLILTLVHQARKMSVSELSQRTGVSEVTVRNDLTALEKQGLLKRVHGSAMALESD 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D + R++ NY +K R+AE+AA+LV+D +T+ IE GS ALLA L KR + +IT S +
Sbjct: 61 DPDARMNINYLLKERLAERAAQLVEDGETVFIEGGSANALLARHLALHKR-VTIITISSY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA+ +R + Q++LLGG +Q SE VGPL + I H ++ F+G DGF+ ++GF G+
Sbjct: 120 IAHLLRD-TQAQVVLLGGLFQHQSESVVGPLTRLCIEQVHFSKAFIGVDGFHPEMGFTGR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRV---ITDQALDKQTQEL 236
DMMR++ V + V++TDSSKF +H L ++ +TD AL +
Sbjct: 179 DMMRADVVNSVLAKGVTNVVITDSSKFGA---IHPSPLGTPGQIGVLVTDDALPAPMRAT 235
Query: 237 LSASGLVLDFVS 248
L+A G+ + V+
Sbjct: 236 LAARGITVHCVA 247
>ref|ZP_00920948.1| COG1349: Transcriptional regulators of sugar metabolism [Shigella
dysenteriae 1012]
Length = 239
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 10 LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNY 69
+V + ++ V L++ VS+VTIR+DL+ LE LRR HG+AV DD+ R+ NY
Sbjct: 1 MVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNY 60
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSS 129
+KR +AE AA LVQ +TI IE+GS+ ALLA L + K+N+ +IT S +IA+ ++ +
Sbjct: 61 MLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKD-AP 119
Query: 130 CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRY 189
C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+DMMR++ V
Sbjct: 120 CEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNA 179
Query: 190 MADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQAL 229
+ + E ++LTDSSKF VH S+ V NRVITD +
Sbjct: 180 VLEKECEAIVLTDSSKFGA---VHSYSIGPVERFNRVITDSKI 219
>ref|YP_001334943.1| putative DEOR-type transcriptional regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gb|ABR76713.1| putative DEOR-type transcriptional regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 249
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 156/252 (61%), Gaps = 9/252 (3%)
Query: 1 MN-RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN R + I+Q+V K ++ V L++ VS+VTIR+DL+ LE + LRR HGYAV +
Sbjct: 1 MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSE 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D+ R+ ++ IKR +A +AA LV +T+ IE+GS+ ALLA L + + +I +IT S +
Sbjct: 61 DVETRMMTHFAIKRELASRAAALVNTGETVFIENGSSNALLARTLAE-RGDITIITVSSY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA+ +++ + ++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ + GF G+
Sbjct: 120 IAHLLKE-TPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFSKAFIGIDGWQAETGFTGR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV---NRVITDQALDKQTQEL 236
DMMR++ V + + E +IL+DSSKFS VH L NRVITD L +E
Sbjct: 179 DMMRADVVNAVLEKHCEAIILSDSSKFSA---VHPYPLGPAGRFNRVITDDRLPDACREQ 235
Query: 237 LSASGLVLDFVS 248
L SGL +D V
Sbjct: 236 LLRSGLTVDIVP 247
>ref|YP_001006231.1| putative DeoR-family regulatory protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
emb|CAL12057.1| putative DeoR-family regulatory protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 248
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 161/250 (64%), Gaps = 12/250 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + I+Q V+ K++ V+ LS+ VS+VTIR+DL+ LE +GLL+R HG+AV DD++
Sbjct: 4 RQQTILQQVNDNKRVSVSELSQVTHVSEVTIRQDLNLLEKRGLLKRVHGFAVALESDDID 63
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
VR+ ++++K+++A AA LV D +TI IESGS+ ALLA L + + I ++T S +IA
Sbjct: 64 VRMMRHFSVKQKLANHAASLVSDGETIFIESGSSNALLAHQLAK-RPGITLVTVSGYIAR 122
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVN--RVFVGTDGFNKDLGFMGKD 180
++ S+C++ILLGG YQ S+ VGPL ++ L HVN + F+G DG+ D GF G+D
Sbjct: 123 QLKD-SACEVILLGGIYQKKSDSMVGPL--TLLCLRHVNFSKAFIGIDGYQMDTGFTGRD 179
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQ---LSLADVNRVITDQALDKQTQELL 237
M+R++ + + E +IL D+SKF + VHQ ++ VNRVITD L ++ L
Sbjct: 180 MLRADVINSVLAKGAENIILADASKFGQ---VHQNLLTPISAVNRVITDNRLPTAYRQQL 236
Query: 238 SASGLVLDFV 247
G+ +D +
Sbjct: 237 ITQGIQVDIL 246
>ref|ZP_01984896.1| putative HTH-type transcriptional regulator YciT [Vibrio harveyi
HY01]
gb|EDL70395.1| putative HTH-type transcriptional regulator YciT [Vibrio harveyi
HY01]
Length = 246
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 147/241 (60%), Gaps = 2/241 (0%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R I+QLV+ +K++ V LS+ + VS VTIR+DL+ LE +G L+R HG A DD+
Sbjct: 3 SRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSDDI 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ RL ++IK+ +A KAA+LV N+T++IE GS ALLA L + + ++ +IT S +IA
Sbjct: 63 DTRLEVRFDIKQALANKAADLVSPNETVLIEGGSANALLARTLAE-RGDVTIITPSAYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ IR +S IILLGG YQ E VGPL K I H + F+G DGF++D GF +DM
Sbjct: 122 HLIRN-TSANIILLGGVYQHQGESLVGPLTKLCIENVHFSTAFLGIDGFHQDTGFTSRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
MR+E + ++LTDSSKF + ++++ ++TD+A K E L G
Sbjct: 181 MRAEIAETIIAKKRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG 240
Query: 242 L 242
+
Sbjct: 241 V 241
>ref|YP_001448701.1| hypothetical protein VIBHAR_06583 [Vibrio harveyi ATCC BAA-1116]
gb|ABU74474.1| hypothetical protein VIBHAR_06583 [Vibrio harveyi ATCC BAA-1116]
Length = 246
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 146/241 (60%), Gaps = 2/241 (0%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
+R I+QLV+ +K++ V LS+ + VS VTIR+DL+ LE +G L+R HG A DD+
Sbjct: 3 SRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSDDI 62
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ RL ++IK+ +A KAA+LV N+T++IE GS LLA L + + ++ +IT S +IA
Sbjct: 63 DTRLEVRFDIKQALANKAADLVSPNETVLIEGGSANGLLARTLAE-RGDVTIITPSAYIA 121
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ IR +S IILLGG YQ E VGPL K I H + F+G DGF++D GF +DM
Sbjct: 122 HLIRN-TSANIILLGGVYQHQGESLVGPLTKLCIENIHFSTAFLGIDGFHQDTGFTSRDM 180
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
MR+E + ++LTDSSKF + ++++ ++TD+A K E L G
Sbjct: 181 MRAEIAETIIAKQRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG 240
Query: 242 L 242
+
Sbjct: 241 V 241
>ref|NP_799813.1| putative regulatory protein [Vibrio parahaemolyticus RIMD 2210633]
ref|ZP_01989725.1| putative HTH-type transcriptional regulator YciT [Vibrio
parahaemolyticus AQ3810]
dbj|BAC61646.1| putative regulatory protein [Vibrio parahaemolyticus RIMD 2210633]
gb|EDM60391.1| putative HTH-type transcriptional regulator YciT [Vibrio
parahaemolyticus AQ3810]
Length = 246
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 149/246 (60%), Gaps = 9/246 (3%)
Query: 1 MN-RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN R I+QLV+ +K++ V LS+ + VS VTIR+DL+ LE +G L+R HG A D
Sbjct: 1 MNPRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSD 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D++ RL ++IK+ +A KAA+LV N+T++IE GS ALLA L + + ++ +IT S +
Sbjct: 61 DIDTRLEVRFDIKQTLANKAADLVAPNETVLIEGGSANALLARTLAE-RGDVTIITPSAY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA+ IR +S IILLGG YQ E VGPL K I H + F+G DGF++D GF +
Sbjct: 120 IAHLIRN-TSANIILLGGVYQHQGESLVGPLTKLCIENIHFSTAFLGIDGFHQDTGFTSR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRV---ITDQALDKQTQEL 236
DMMR++ + ++LTDSSKF + ++ S+ N + +TD+A K E
Sbjct: 179 DMMRADIAEAILAKKRRNIVLTDSSKFGQ---IYPSSIGKTNEISVLLTDKAAPKSDLEQ 235
Query: 237 LSASGL 242
L G+
Sbjct: 236 LKKLGV 241
>ref|ZP_01259433.1| putative regulatory protein [Vibrio alginolyticus 12G01]
gb|EAS77347.1| putative regulatory protein [Vibrio alginolyticus 12G01]
Length = 246
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MN-RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD 59
MN R I+QLV+ +K++ V LS+ + VS VTIR+DL+ LE +G L+R HG A D
Sbjct: 1 MNPRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSD 60
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
D++ RL ++IK+ +A +AA+LV N+T++IE GS ALLA L + + ++ +IT S +
Sbjct: 61 DIDARLEVRFDIKQSLANQAADLVAPNETVLIEGGSANALLARTLAE-RGDVTIITPSAY 119
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
IA+ IR +S IILLGG YQ E VGPL K I H + F+G DGF++D GF +
Sbjct: 120 IAHLIRN-TSANIILLGGMYQHQGESLVGPLTKLCIENIHFSTAFLGIDGFHQDTGFTSR 178
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
DMMR+E + ++LTDSSKF + +++ ++TD+A K E +
Sbjct: 179 DMMRAEIAETIIAKKRRNIVLTDSSKFGQIYPSSIGKTDEISVLLTDKAAPKSDLEQIKK 238
Query: 240 SGL 242
G+
Sbjct: 239 RGV 241
>ref|ZP_01477068.1| hypothetical protein VEx2w_02000272 [Vibrio sp. Ex25]
gb|EDN58343.1| putative HTH-type transcriptional regulator YciT [Vibrio sp. Ex25]
Length = 246
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 8/243 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I+QLV+ +K++ V LS+ + VS VTIR+DL+ LE +G L+R HG A DD++
Sbjct: 4 RQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSDDID 63
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
RL ++IK+ +A KAA+LV ++T++IE GS ALLA L + + ++ +IT S +IA+
Sbjct: 64 TRLEVRFDIKQSLANKAADLVAPSETVLIEGGSANALLARTLAE-RGDVTIITPSAYIAH 122
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
IR +S IILLGG YQ E VGPL K I H + F+G DGF++D GF +DMM
Sbjct: 123 LIRN-TSANIILLGGVYQHQGESLVGPLTKLCIENIHFSTAFLGIDGFHQDTGFTSRDMM 181
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRV---ITDQALDKQTQELLSA 239
R++ + ++LTDSSKF + ++ S+ + N + +TD+A K E +
Sbjct: 182 RADIAEAILAKNRRNIVLTDSSKFGQ---IYPSSIGNTNEISVLLTDKAAPKSDLEQIKK 238
Query: 240 SGL 242
G+
Sbjct: 239 LGV 241
>ref|ZP_01897206.1| putative regulatory protein [Moritella sp. PE36]
gb|EDM68315.1| putative regulatory protein [Moritella sp. PE36]
Length = 245
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 142/226 (62%), Gaps = 4/226 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R II LV++K + V +S +L VS+VTIR DL+KLE +G +RR HG A ++ D+++
Sbjct: 4 RHTDIINLVNEKGRASVGEMSTKLGVSEVTIRHDLNKLEKEGFIRRVHGGATPHNTDNVS 63
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
R++ NY KR++A AA LV+ +TIMIE GS ALLA+ L + + ++ +IT S +IA+
Sbjct: 64 HRITVNYEHKRKMAMCAASLVEHGETIMIEGGSANALLAKELGK-RSDVTIITPSSYIAH 122
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
+++ + +II+LGG YQ SE VG L + I H + F+G DG + + GF ++MM
Sbjct: 123 LMKE-TDVKIIVLGGLYQHESESMVGTLTRLCIKHTHFTKAFLGIDGLHPNTGFTSRNMM 181
Query: 183 RSE-GVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
R++ GV + A+ +VI TDSSKF + V+ VITD+
Sbjct: 182 RADVGVAILEKGAQNIVI-TDSSKFGQVHNTPLYQFEQVDMVITDE 226
>ref|NP_348058.1| Transcriptional regulators of sugar metabolism (deoR family)
[Clostridium acetobutylicum ATCC 824]
gb|AAK79398.1|AE007654_7 Transcriptional regulators of sugar metabolism (deoR family)
[Clostridium acetobutylicum ATCC 824]
Length = 246
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 140/235 (59%), Gaps = 2/235 (0%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R +I ++ + KI V LS+ L VS+VTIRKDL LE + L++R HG A ++S D +
Sbjct: 4 RQNKIFNIIVKSPKITVKELSKLLSVSEVTIRKDLSSLEEERLIKRIHGAAEISS-DSIE 62
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
++ Y K RIA++ + V + DTI+IE+GST ALLA+ + + RN+ +ITNS +IA
Sbjct: 63 SKILSKYEEKLRIAKEGIKFVDNGDTILIEAGSTNALLAKQISEA-RNVHIITNSLYIAE 121
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
++ + +I L+GG Q + VGP+ K ++ V++ F+G DGF+K+LGF D
Sbjct: 122 NLKLKENVKITLIGGELQKEGDALVGPVAKACLNEVIVDKAFIGMDGFSKELGFCCSDFF 181
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
R+E + M A +V++L ++SKF + +V VITD + K+ +L
Sbjct: 182 RAEIAKEMCSKANKVIVLGEASKFENVGVTLTAKFNEVYTVITDTKISKENMNIL 236
>ref|ZP_02565395.1| hypothetical protein Senten_06275 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
Length = 167
Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
Query: 10 LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNY 69
+V K ++ V L++ VS+VTIR+DL+ LE + LRR HG+AV DD+ R+ NY
Sbjct: 1 MVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDVETRMMTNY 60
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSS 129
+KRR+AE AA LV +++ IE+GS+ ALLA L + K ++ +IT S +IA+ +++ +
Sbjct: 61 TLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQK-DVTIITVSSYIAHLLKE-TP 118
Query: 130 CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
C++ILLGG YQ SE VGPL ++ I H ++ F+G DG+ D G+
Sbjct: 119 CEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGY 165
>ref|ZP_02081395.1| hypothetical protein CLOLEP_02870 [Clostridium leptum DSM 753]
gb|EDO60053.1| hypothetical protein CLOLEP_02870 [Clostridium leptum DSM 753]
Length = 262
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 143/239 (59%), Gaps = 5/239 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL--NSGDD 60
R +I++L+ QK K+ V L + DVS TIR DL LE++ L+R HG A+ + +
Sbjct: 14 RKGQILELLRQKSKLLVPELCDYFDVSPATIRNDLRDLENERKLKRTHGGAISLEKTSFE 73
Query: 61 LNVRLS--YNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L+ R N KR+IA AA+L++D DTI++++G+T LA+ L KR++ ++ N
Sbjct: 74 LDSRHKEIRNMEQKRQIAACAAKLIEDGDTIILDTGTTTLELAKCL-SGKRDLTIVLNDI 132
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA+ + +++ +IL+GG + TVGP+ +S +V++VF+ ++ + D GF
Sbjct: 133 EIASLLEEFTQANLILIGGTLRHGFHCTVGPMAVSYLSELNVDKVFLSSNAVSLDRGFTT 192
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
D ++E + M A EV++L+DSSKF K S +L+D++++ITD+ +D Q E L
Sbjct: 193 PDFNQAEVKKTMIQVASEVIMLSDSSKFGKLSFTQFAALSDIDKLITDKGIDPQAAEQL 251
>ref|ZP_01865638.1| putative regulatory protein [Vibrio shilonii AK1]
gb|EDL55815.1| putative regulatory protein [Vibrio shilonii AK1]
Length = 229
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 19 VNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEK 78
V LSE VS VTIR+DL+ LE G L+R HG AV DD++ RL +++IK+++A K
Sbjct: 3 VTDLSELTGVSGVTIRQDLNYLEQNGYLKRVHGAAVSLQSDDIDSRLEVHFDIKQQLANK 62
Query: 79 AAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGY 138
AA LV N+T++IE GS ALLA L + + ++ +IT S +IA+ +R ++S IILLGG
Sbjct: 63 AAALVAANETVLIEGGSANALLARTLAE-RGDVTIITPSAYIAHLVR-HTSANIILLGGV 120
Query: 139 YQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVV 198
YQ E VGPL K I H + F+G DGF+ D GF +DMMR++ + +
Sbjct: 121 YQHQGESLVGPLTKLCIENIHFSTAFLGIDGFDIDTGFTSRDMMRADIADTIIQKKRRNI 180
Query: 199 ILTDSSKFSKTSLVHQLSLADVNRV---ITDQALDK 231
+LTDSSKF + + S+ D + + +TD A+ +
Sbjct: 181 VLTDSSKFGQ---IFPSSIGDTSEISILLTDDAVPE 213
>ref|NP_865044.1| putative aga operon transcriptional repressor [Rhodopirellula
baltica SH 1]
emb|CAD72728.1| putative aga operon transcriptional repressor [Rhodopirellula
baltica SH 1]
Length = 301
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 9/247 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R +R+ LV + + L+ QL VS+ TIR+DL+ LE GL RR HG V +GD
Sbjct: 6 RRDRLRDLVKDRGFAALGELASQLSVSESTIRRDLEMLEEAGLARRTHG-GVYWTGDSDT 64
Query: 61 LNVRLSYN---YNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
++V S N + K+ I A+EL+ D+DTI+++ GST LA ++ R ++V+TNS
Sbjct: 65 ISVFESRNDDFWAAKQSIGRAASELIADHDTILLDGGSTVYELARLIIH--RPLQVVTNS 122
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+A+ + S ++++GG + + VT+GPL ++ HV F+ G + GF
Sbjct: 123 LPVAHLLSTSDSIDLVMIGGCVRGRTSVTIGPLADSQLANIHVTTAFLSVAGVSP-RGFF 181
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
DMM E + M +AE ++L D SKF KTSL L ++ V+TD LD + L
Sbjct: 182 NSDMMLVESEKAMLASAERGIVLADHSKFGKTSLSRICELHQMDTVVTDDGLDSDAKAWL 241
Query: 238 SASGLVL 244
++G+ L
Sbjct: 242 ESAGVQL 248
>ref|YP_001662219.1| transcriptional regulator, DeoR family [Thermoanaerobacter sp.
X514]
gb|ABY91883.1| transcriptional regulator, DeoR family [Thermoanaerobacter sp.
X514]
Length = 274
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 134/229 (58%), Gaps = 6/229 (2%)
Query: 6 RIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRL 65
+I +++S+ K I V+ LS+ +VS+ TIR+DL LE KG ++R HG A+LN G
Sbjct: 15 KIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILNVGTHYEPAF 74
Query: 66 SYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
++ KR+I + AA ++++ D+I++++G+T +A L TK + V+TNS IA
Sbjct: 75 FEKEDVELEAKRKIGKIAASMIEEGDSIILDAGTTTLEIARNLKNTK--LTVVTNSPLIA 132
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ ++I+ GG + ++ VGP+ + +I F V++ F+GT+ + + G M D+
Sbjct: 133 IELSKHEDIELIVTGGIQRWRTKALVGPIAEMVIKQFKVDKAFIGTNAISFEDGLMTPDL 192
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALD 230
+ + + M D A EV I+ D +KF K S V + D+ +ITD +D
Sbjct: 193 IEANTKKAMCDVASEVYIVADHTKFGKKSFVKFADIKDITAIITDDEID 241
>ref|ZP_02044338.1| hypothetical protein ACTODO_01202 [Actinomyces odontolyticus ATCC
17982]
gb|EDN80750.1| hypothetical protein ACTODO_01202 [Actinomyces odontolyticus ATCC
17982]
Length = 249
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 1/231 (0%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I+ ++++ ++ V L+ L VS VT+R L L+ +G L R HG A + +++
Sbjct: 7 RTNYILDRLAREGEVSVAQLASDLGVSPVTVRASLKSLDEQGYLVRTHGGARPTTFRNIH 66
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
+R + IK RIA AA+++ D+D IMIE+G+TCAL+ + L KR ++V+TNS +
Sbjct: 67 LRQNDRVEIKERIARAAADMIHDDDRIMIEAGTTCALIVKYLAG-KRGVQVLTNSVLVFA 125
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
R + I L GG+++ SE VGP+ + I+ F+ F+GTDGF+ D G + +
Sbjct: 126 NARSNPNLNITLTGGHFRAESESLVGPVAERAINDFNARVAFLGTDGFSVDRGLTTQLVE 185
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
+ M A+E +L DSSK+ + V + + +V +ITD + +++
Sbjct: 186 GGQVGSIMRTRAQETWLLADSSKYGEAGFVSFMGIDEVTGIITDDEIPEES 236
>ref|NP_624108.1| Transcriptional regulator of sugar metabolism [Thermoanaerobacter
tengcongensis MB4]
gb|AAM25712.1| Transcriptional regulator of sugar metabolism [Thermoanaerobacter
tengcongensis MB4]
Length = 268
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 6/229 (2%)
Query: 6 RIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRL 65
+I +++S+ K I V+ LS+ +VS+ TIR+DL LE KG ++R HG A+L +G
Sbjct: 9 KIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKTGTHYEPAF 68
Query: 66 SYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ KR+I AA L+++ DTI+++SG+T +A L + + V+TNS IA
Sbjct: 69 FEKEEVELEAKRKIGRIAASLIEEGDTILLDSGTTTLEIARNLKNMR--LTVVTNSPLIA 126
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ +Y ++I+ GG + ++ VGP+ + +I F V++ F+GT+ + + G M D+
Sbjct: 127 IELSKYEDIELIVTGGIQRWRTKALVGPIAEMVIRQFKVDKAFIGTNAISFEDGLMTPDL 186
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALD 230
+ + + M + A EV ++ D +KF K S V L D+ +ITD +D
Sbjct: 187 IEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITDDEID 235
>ref|YP_001664159.1| transcriptional regulator, DeoR family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gb|ABY93823.1| transcriptional regulator, DeoR family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
Length = 274
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 6/229 (2%)
Query: 6 RIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRL 65
+I +++S+ K I V+ LS+ +VS+ TIR+DL LE KG ++R HG A+LN G
Sbjct: 15 KIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILNVGTHYEPAF 74
Query: 66 SYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
++ KR+I + AA ++++ D+I++++G+T +A L TK + V+TNS IA
Sbjct: 75 FEKEDVELEAKRKIGKIAASMIEEGDSIILDAGTTTLEIARNLKNTK--LTVVTNSPLIA 132
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++ ++I+ GG + ++ VGP+ + +I F V++ F+GT+ + + G M D+
Sbjct: 133 IELSKHEDIELIVTGGIQRWRTKALVGPIAEMVIRQFKVDKAFIGTNAISFEDGLMTPDL 192
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALD 230
+ + + M D + EV I+ D +KF K S V + D+ +ITD +D
Sbjct: 193 IEANTKKAMCDVSSEVYIVADHTKFGKKSFVKFADIKDITAIITDDEID 241
>ref|ZP_01094342.1| putative aga operon transcriptional repressor [Blastopirellula
marina DSM 3645]
gb|EAQ76999.1| putative aga operon transcriptional repressor [Blastopirellula
marina DSM 3645]
Length = 249
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 9/226 (3%)
Query: 22 LSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNV-----RLSYNYNIKRRIA 76
L+ +L+VS+ T+R+DLD LE G +R HG V +G N+ R + KR+IA
Sbjct: 13 LASELEVSESTVRRDLDSLEDSGSAKRTHG-GVFYTGPTPNLPHFELRQEMQWEKKRQIA 71
Query: 77 EKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLG 136
A+ L++D DT++++ GST LA++L R ++V+TNS +AN ++ +I +G
Sbjct: 72 RAASVLIEDGDTVLLDGGSTTYELAQLLV--GRTLQVVTNSLPVANLFMASNTTDLIFVG 129
Query: 137 GYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEE 196
GY + V+ GP EMI+ + R + T G + G +++ E + M AA E
Sbjct: 130 GYVHNRTGVSCGPYATEMIAKLNARRAVLSTAGITEQ-GLYNSNLLLIETEQAMVRAAGE 188
Query: 197 VVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASGL 242
V+I+ DS+KF + SL HQ LA+++R++ D + Q +L +G+
Sbjct: 189 VIIVADSTKFGRQSLAHQCPLAEIDRLVVDDQITPQWLTVLQDAGI 234
>ref|ZP_02958569.1| Putative aga operon transcriptional repressor [Providencia stuartii
ATCC 25827]
Length = 257
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS--- 57
+ R E I+ ++ Q+ + V++LS+Q +VS VTIR DL LE KG R +G A++N
Sbjct: 6 VKRRECIMDMLCQEGSVRVDALSKQFNVSSVTIRNDLRYLEKKGCALRSYGGAMVNHKFA 65
Query: 58 -GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
L V+ + IK RIA+KAAE V D D+++I+SGST A + L + R++ V+TN
Sbjct: 66 FDRPLQVKGRMDREIKTRIAKKAAEFVNDGDSLIIDSGSTTAEIVPFL-KHHRDLVVMTN 124
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+ IA + + S +++LGG+ + NS GP ++ +S + + +F+G DGF+ + G
Sbjct: 125 ALNIAYELAGFDSVDVMVLGGHVRKNSYSLYGPAAEQQLSQYRFDTLFLGVDGFDLEAGI 184
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTS--LVHQLSLADVNRVITDQALDKQTQ 234
+ + R M D A +++ + D +KF + S L+ + L ++R+ITD + +
Sbjct: 185 TTPNSGEAHLNRVMCDVAHQIIAVADGTKFGRKSFCLIREARL--IHRLITDSRIPLHYR 242
Query: 235 ELLSASGL 242
+ L+A G+
Sbjct: 243 QALTAFGV 250
>ref|YP_001470456.1| transcriptional regulator, DeoR family [Thermotoga lettingae TMO]
gb|ABV33392.1| transcriptional regulator, DeoR family [Thermotoga lettingae TMO]
Length = 254
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 142/241 (58%), Gaps = 6/241 (2%)
Query: 7 IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL--NSGDDLNV- 63
II + +K K+ V+ L++QL VS VTIRKDLD LE+ G+L R HG A+L +S + N
Sbjct: 10 IIDFLRKKGKVTVSELTKQLKVSSVTIRKDLDFLEANGILVRTHGGAILPDHSRSEWNFL 69
Query: 64 -RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRN-IKVITNSCFIA 121
++ N K+RIA+K L++D DT++++S ST L + + + ++TN+ FIA
Sbjct: 70 KKIHQRENEKKRIAKKIISLIEDGDTVILDSSSTNYYATFELRKADLSMVTIVTNNVFIA 129
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ + ++++LGG + NS VGP + +V++ F+GT GF+ + GFM +
Sbjct: 130 GKLIELG-IEVLVLGGVVRENSLSLVGPWAVRFLEEINVDKAFLGTTGFSVEKGFMTPSV 188
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
+ ++ + M +A +V I+TDS+KF++ + D++ +ITD+ + ++ + L G
Sbjct: 189 VEADVKKAMIRSASKVYIVTDSTKFARNAFASFALPEDIDGIITDEEIPREYEAFLLEKG 248
Query: 242 L 242
+
Sbjct: 249 I 249
>ref|ZP_01060560.1| transcriptional regulator, GlpR family protein [Flavobacterium sp.
MED217]
gb|EAQ50055.1| transcriptional regulator, GlpR family protein [Leeuwenhoekiella
blandensis MED217]
Length = 250
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 5/251 (1%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
M R + I+ L+ ++K + V +L E+LDVS VTIRKDL LE KGLL R HG A L +
Sbjct: 1 MERHQEILDLLKKEKHVKVATLCERLDVSAVTIRKDLKLLEDKGLLFRTHGGASLENPYM 60
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
D++ + S + K IAE AA+ +Q+ND+I+I SG+T LA+ + + + VIT+
Sbjct: 61 NERDVSEKASISAEEKSLIAEAAAQRIQENDSIIIASGTTVQQLAKAIKPIGK-LNVITS 119
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S +A + ++ II LGG + S G + +++ ++ F+G DG + D G
Sbjct: 120 SLLVAIELMKHRDIDIIQLGGNIRHRSGSVTGHYAEHILNHISSHQFFMGVDGIDLDFGC 179
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
++ + + M +AA++ +IL DSSKF K SL L +++ +ITD+ L E
Sbjct: 180 TTTNIEEAILNKKMMEAAQKTIILADSSKFGKRSLAKICELDEISEIITDKDLSAADAER 239
Query: 237 LSASGLVLDFV 247
+ G+ L V
Sbjct: 240 IREMGIKLTLV 250
>ref|ZP_02849517.1| transcriptional regulator, DeoR family [Paenibacillus sp. JDR-2]
gb|EDS50573.1| transcriptional regulator, DeoR family [Paenibacillus sp. JDR-2]
Length = 252
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 6/250 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNS 57
R E I++LV+++ I V+ LSE V++ TIR+DLD+LE G LRR HG AV
Sbjct: 5 ERYETIVRLVNERGSIRVSELSELCQVTEETIRRDLDRLEQAGRLRRSHGGAVSVKDAQP 64
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
+ R + + KRRIAE+A +L++ ND I++++ ST +A +L ++ V+TNS
Sbjct: 65 ETPVAEREIMHADEKRRIAEEAVKLIKPNDRILLDASSTAWYMASILPDI--SLTVLTNS 122
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+A + ++I GG S VGPL + + +HVN++F+ G + + G
Sbjct: 123 IKVAVALSNKEKIEVISTGGILASRSLSYVGPLAERSLETYHVNKLFLSCKGVHLERGIS 182
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ +++ M AE+V++L DSSKF + H LA+V+ +ITD+ L ++ L
Sbjct: 183 ESNELQARIKHKMLGIAEQVILLADSSKFGVQAFTHVGDLAEVDAIITDRRLSQEAAAGL 242
Query: 238 SASGLVLDFV 247
S + + V
Sbjct: 243 SERSIPVTMV 252
>ref|ZP_01063128.1| Transcriptional regulator of sugar metabolism [Vibrio sp. MED222]
gb|EAQ55807.1| Transcriptional regulator of sugar metabolism [Vibrio sp. MED222]
Length = 255
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 137/244 (56%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R E I+ + +K +VN SE +VS+VTIR DL+ LE KG L+R +G AVLN+
Sbjct: 7 RREEILHYIQTHQKGEVNHFSELYNVSEVTIRNDLNYLEKKGCLKRCYGGAVLNNQFAFE 66
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
LN + N N K ++ E AA L+ D D ++++SGST +A L + K+++ V+TN
Sbjct: 67 RPLNDKKQLNNNTKAKLGEYAASLIVDGDKVILDSGSTTEQIAYHL-EGKQDLVVMTNGI 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA ++ S+ +++ GG + NS G ++ +++F N++F+G DGF+K G
Sbjct: 126 NIAYHLANQSNVSVMVTGGTMRDNSYSVHGTGGEDFLTVFRFNKLFLGVDGFDKTSGITT 185
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ R M +AA+ V+ +TDSSKF + S S +N +ITD + + + L+
Sbjct: 186 PHQGEANINRKMLEAAQTVIAVTDSSKFDRHSFCLIASPEQINMLITDSGIPQTYVDQLT 245
Query: 239 ASGL 242
G+
Sbjct: 246 DLGV 249
>ref|ZP_01217450.1| transcriptional repressor of aga operon [Psychromonas sp. CNPT3]
gb|EAS37731.1| transcriptional repressor of aga operon [Psychromonas sp. CNPT3]
Length = 258
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R E I+ + QK + V L+E VS VTIR DL LE KG++ R +G A LN +
Sbjct: 7 RRELILFHLHQKGSVQVADLAEMFSVSTVTIRNDLGALEKKGIVTRAYGGAYLNKANISL 66
Query: 60 ---DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
++ + +N IK+RI + AA L+ + D+I+++SG+T + +AE L Q +N+ V+TN
Sbjct: 67 TEYSIDQKSKFNDVIKQRIGKLAATLINEGDSIILDSGTTTSQIAEHL-QNIKNVIVMTN 125
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+AN + + +I++ GG+ + S G ++ + +H N++F+G DGF+ + G
Sbjct: 126 GINVANALIKSPGIEILITGGHLRRKSLSFFGSQAEQSLKQYHFNKLFLGVDGFHLEKGI 185
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ ++ R M + A+E++++TDSSKFS SL L V+ VITD +
Sbjct: 186 STHNEPEAQLNRAMCEVADEIIVVTDSSKFSNISLHKILDSKRVDTVITDDGI 238
>ref|YP_177067.1| transcriptional regulator, DeoR family [Bacillus clausii KSM-K16]
dbj|BAD66106.1| DeoR family transcriptional regulator [Bacillus clausii KSM-K16]
Length = 262
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 132/240 (55%), Gaps = 3/240 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R + I++ + + + ++ LS +LDV++ TIRKDL +LE KGL+R+ HG AVLN +
Sbjct: 6 RQDLIMKELYEYHSVKISELSSKLDVTRETIRKDLYELEEKGLIRKVHGGAVLNKANLET 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ + R N KR IA+KA E V DNDTI I+ G+T A L K + ++TNS
Sbjct: 66 NYSSRKIVNEWEKRAIAKKAVEFVFDNDTIYIDYGTTALYFARELIMKKTGLTIVTNSLS 125
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+AN + ++S+ II++GG + N GP+ + I+ +V+ F G + ++G+
Sbjct: 126 LANELVEHSNFSIIIIGGNVRKNERSLYGPVANQTIANLYVDTGFFGIGALHPEVGYTNI 185
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
M +E R M ++ V++ D SKF + + +V+ +ITD D + + + A
Sbjct: 186 HMGEAEVSRLMVQHSKRRVMMADYSKFGSIHMNKVAPIEEVDTLITDSKADAEMLKAIQA 245
>ref|ZP_01784208.1| L-fucose operon activator [Haemophilus influenzae 22.1-21]
gb|EDJ89841.1| L-fucose operon activator [Haemophilus influenzae 22.1-21]
Length = 249
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 6/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I+Q V+Q+ K V L++ D+S TIR+DL+KL +KGLL R HG AV N DL
Sbjct: 4 RDELILQWVNQQGKASVIELAQHCDISVETIRRDLNKLANKGLLHRTHGGAVSNKTKDLG 63
Query: 63 ----VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R N KR IA+KA +L+ +N I +++ ST A ++ V+TNS
Sbjct: 64 SFFQTRKHINATAKRHIAQKALDLLYENAVIGLDASSTSWYFAYLMPNIP--CTVVTNSM 121
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
F N + S+ + I+ GG Y E GPL + ++ H+N G +K+
Sbjct: 122 FNINALVNKSNVKTIVTGGVYSAKYEAFYGPLSEYLLQRLHINFSVFSCSGIDKNGNIWE 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + + R M +A+E +L DSSKF KTSL+ L+ +N + +D++L Q+
Sbjct: 182 SNELNASLKRKMMEASERAYLLIDSSKFEKTSLIQLADLSKINTIFSDRSLPDNLQK 238
>ref|NP_438773.1| L-fucose operon activator [Haemophilus influenzae Rd KW20]
ref|ZP_00156577.2| COG1349: Transcriptional regulators of sugar metabolism
[Haemophilus influenzae R2866]
ref|ZP_01791438.1| L-fuculose phosphate aldolase [Haemophilus influenzae PittAA]
ref|ZP_01795651.1| L-fuculose phosphate aldolase [Haemophilus influenzae PittII]
ref|YP_001292657.1| L-fucose isomerase [Haemophilus influenzae PittGG]
sp|P44780|FUCR_HAEIN L-fucose operon activator
gb|AAC22274.1| L-fucose operon activator (fucR) [Haemophilus influenzae Rd KW20]
gb|EDK07018.1| L-fuculose phosphate aldolase [Haemophilus influenzae PittAA]
gb|EDK10760.1| L-fuculose phosphate aldolase [Haemophilus influenzae PittII]
gb|ABR00274.1| L-fucose isomerase [Haemophilus influenzae PittGG]
Length = 249
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 6/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I+Q V+Q+ K V L++ D+S TIR+DL+KL +KGLL R HG AV N DL
Sbjct: 4 RDELILQWVNQQGKASVIELAQHCDISVETIRRDLNKLANKGLLHRTHGGAVSNKTKDLG 63
Query: 63 ----VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R N KR IA+KA +L+ +N I +++ ST A ++ V+TNS
Sbjct: 64 SFFQTRKHINATAKRHIAQKALDLLYENAVIGLDASSTSWYFAYLMPDIP--CTVVTNSM 121
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
F N + S+ + I+ GG Y E GPL + ++ H+N G +K+
Sbjct: 122 FNINALVNKSNVKTIVTGGVYSAKYEAFYGPLSEYLLQRLHINFSVFSCSGIDKNGNIWE 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + + R M +A+E +L DSSKF KTSL+ L+ +N + +D++L Q+
Sbjct: 182 SNELNASLKRKMMEASERAYLLIDSSKFEKTSLIQLADLSKINTIFSDRSLPDNLQK 238
>ref|ZP_01234292.1| transcriptional regulator of sugar metabolism [Vibrio angustum S14]
gb|EAS66747.1| transcriptional regulator of sugar metabolism [Vibrio angustum S14]
Length = 258
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 5/249 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R E I + +K +VN SE DVS+VTIR DL+ LE KG + R +G A+LN+
Sbjct: 7 RREEIFHYIQIHQKGEVNYFSELYDVSEVTIRNDLNHLEKKGCVTRCYGGALLNNQFAFE 66
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
LN + N +IK ++ E AA LVQ D I+I+SGST + L K N+ V+TN
Sbjct: 67 RPLNDKKQLNCDIKEKLGEYAASLVQSGDKIIIDSGSTTEQITHYL-NPKHNLVVMTNGI 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA ++ + ++++ GG + NS G +E ++ F N++F+G DGF+K G
Sbjct: 126 NIAYHLANQENIEVMVSGGVMRHNSYSLHGTSGEEFLAGFRFNKLFLGVDGFDKVDGITT 185
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ R M +AA+ V+ +TDSSKF++ S +N +ITD + + E L+
Sbjct: 186 PHQGEANINRKMVEAAQTVIAVTDSSKFNRQSFCLIARPEQLNILITDSGIPQDYVEQLT 245
Query: 239 ASGLVLDFV 247
G+ + V
Sbjct: 246 EMGVDVHIV 254
>ref|ZP_01158539.1| Transcriptional regulator of sugar metabolism [Photobacterium sp.
SKA34]
gb|EAR57495.1| Transcriptional regulator of sugar metabolism [Photobacterium sp.
SKA34]
Length = 258
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 5/249 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R E+I + +K +V SE DVS+VTIR DL+ LE KG + R +G A+LN+
Sbjct: 7 RREKIFHYIQIHQKGEVTYFSELYDVSEVTIRNDLNHLEKKGCVTRCYGGALLNNKFAFE 66
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
LN + N +IK ++ E AA LVQ D I+I+SGST + L K N+ V+TN
Sbjct: 67 RPLNDKKQLNCDIKEKLGEYAASLVQSGDKIIIDSGSTTEQITHYL-NPKHNLVVMTNGI 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA ++ + ++++ GG + NS G +E ++ F N++F+G DGF+K G
Sbjct: 126 NIAYHLANQENIEVMVSGGVMRHNSYSLHGTGGEEFLAGFRFNKLFLGVDGFDKIAGITT 185
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ R M +AA+ V+ +TDSSKF++ S +N +ITD + + E L+
Sbjct: 186 PHQGEANINRKMVEAAQTVIAVTDSSKFNRQSFCLIARPEQLNILITDSGIPQDYVEQLT 245
Query: 239 ASGLVLDFV 247
G+ + V
Sbjct: 246 EMGVDVHIV 254
>ref|YP_589738.1| transcriptional regulator, DeoR family [Acidobacteria bacterium
Ellin345]
gb|ABF39664.1| transcriptional regulator, DeoR family [Acidobacteria bacterium
Ellin345]
Length = 288
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 135/243 (55%), Gaps = 5/243 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNSG 58
R +I+Q+V ++ ++ V+ LSE+ S VTIR DL++L +GLL R G AV N
Sbjct: 41 RRMQILQIVRERGRVRVHELSERFSTSAVTIRNDLNELHRRGLLLRSRGGAVHYETANFE 100
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L RL + KRRI AA +V D +TI+++SG+T +A L + K+ ++VITN
Sbjct: 101 SSLTERLQTRASEKRRIGAAAAAMVNDGETIILDSGTTTQEIARHL-KGKKGLQVITNGV 159
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+A + Q++++GG + +S VG + M+ +R+F+G + + G
Sbjct: 160 NVAMELLGVQGIQLVIVGGILRADSVSVVGGFAENMLQHLAADRLFLGAAACDPEFGPST 219
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
++ S + M A EVV++ DS+KF+K S+ + + +++VITD+ + + +E L
Sbjct: 220 PNLEESLVNQAMVKIAREVVLVVDSTKFTKRSMSRITAFSGIHKVITDRGIAPEIEERLK 279
Query: 239 ASG 241
SG
Sbjct: 280 TSG 282
>ref|ZP_00154653.1| COG1349: Transcriptional regulators of sugar metabolism
[Haemophilus influenzae R2846]
ref|YP_001290263.1| L-fucose isomerase [Haemophilus influenzae PittEE]
gb|ABQ97880.1| L-fucose isomerase [Haemophilus influenzae PittEE]
Length = 249
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 6/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I+Q V+Q+ K V L++ D+S TIR+DL+KL +KGLL R HG AV N DL
Sbjct: 4 RDELILQWVNQQGKASVIELAQHCDISVETIRRDLNKLANKGLLHRTHGGAVSNKTKDLG 63
Query: 63 ----VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R N KR IA+KA +L+ +N I +++ ST A ++ V+TNS
Sbjct: 64 SFFQTRKHINATAKRHIAQKALDLLYENAVIGLDASSTSWYFAYLMPDIP--CTVVTNSM 121
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
F N + S+ + I+ GG Y E GPL + ++ H+N G +K+
Sbjct: 122 FNINALVNKSNVKTIVTGGVYSAKYEAFYGPLSEYLLQRLHINFSVFSCSGIDKNGNIWE 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + + R M +A+E +L DSSKF KTSL+ L +N + +D++L Q+
Sbjct: 182 SNELNASLKRKMMEASERAYLLIDSSKFEKTSLIQLADLNKINTIFSDRSLPDNLQK 238
>ref|ZP_01793401.1| L-fucose operon activator [Haemophilus influenzae PittHH]
gb|EDK09000.1| L-fucose operon activator [Haemophilus influenzae PittHH]
Length = 249
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 124/237 (52%), Gaps = 6/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R E I+Q V+Q+ K V L++ D+S TIR+DL+KL +KGLL R HG AV N G
Sbjct: 4 RDELILQWVNQQGKASVIELAQHCDISVETIRRDLNKLANKGLLHRTHGGAVSNKTKNLG 63
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R N KR IA+KA +L+ +N I +++ ST A ++ V+TNS
Sbjct: 64 SFFQTRKHINATAKRHIAQKALDLLYENAVIGLDASSTSWYFAYLMPDIP--CTVVTNSM 121
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
F N + S+ + I+ GG Y E GPL + ++ H+N G +K+
Sbjct: 122 FNINALVNKSNVKTIVTGGVYSAKYEAFYGPLSEYLLQRLHINFSVFSCSGIDKNGNIWE 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + + R M +A+E +L DSSKF KTSL+ L+ +N + +D++L Q+
Sbjct: 182 SNELNASLKRKMMEASERAYLLIDSSKFEKTSLIQLADLSKINTIFSDRSLPDNLQK 238
>ref|YP_248426.1| L-fucose operon activator [Haemophilus influenzae 86-028NP]
ref|ZP_01787413.1| L-fucose operon activator [Haemophilus influenzae 22.4-21]
ref|ZP_01797752.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
gb|AAX87766.1| L-fucose operon activator [Haemophilus influenzae 86-028NP]
gb|EDJ90260.1| L-fucose operon activator [Haemophilus influenzae R3021]
gb|EDK12986.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.4-21]
Length = 249
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 6/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I+Q V+Q+ K V L++ D+S TIR+DL+KL +KGLL R HG AV N DL
Sbjct: 4 RDELILQWVNQQGKASVIELAQHCDISVETIRRDLNKLANKGLLHRTHGGAVSNKTKDLG 63
Query: 63 ----VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R N KR IA+KA +L+ +N I +++ ST A ++ V+TNS
Sbjct: 64 SFFQTRKHINATAKRHIAQKALDLLYENAVIGLDASSTSWYFAYLMPDIP--CTVVTNSM 121
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
F N + S+ + I+ GG Y E GPL + ++ H+N G +++
Sbjct: 122 FNINALVNKSNVKTIVTGGVYSAKYEAFYGPLSEYLLQRLHINFSVFSCSGIDQNGNIWE 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + + R M +A+E +L DSSKF K SL+ L+ +N + +DQ L Q+
Sbjct: 182 SNELNASLKRKMIEASERAYLLIDSSKFEKKSLIQLTDLSKINTIFSDQPLPDNLQK 238
>ref|ZP_02418839.1| hypothetical protein ANACAC_01423 [Anaerostipes caccae DSM 14662]
gb|EDR97801.1| hypothetical protein ANACAC_01423 [Anaerostipes caccae DSM 14662]
Length = 262
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 10/248 (4%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL-- 55
MN ER I+ L++++K++ V L+++ +VS TIR++L+ + GL+ R HG A++
Sbjct: 1 MNHKERQLQILNLLNEEKEVSVEDLAKKFNVSASTIRRELNSMNKLGLIIRTHGGALVQV 60
Query: 56 NSGD---DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIK 112
N D D R +NY+ K IA+KAA ++DN+ + + S S L+ L T +NI
Sbjct: 61 NKNDEILDHTKRKFHNYHEKMEIAKKAASYIKDNEFVFLHSSSITDLMPPFL--TAKNIT 118
Query: 113 VITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNK 172
V TNS IA + + CQ++L+GG Y +E G + E I H + F+G +G +
Sbjct: 119 VATNSLNIAKSLTEADDCQLLLIGGLYYKYAEAIEGTMTVEQIHSMHFQKAFLGANGVDL 178
Query: 173 DLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
++GF +A++E L + KF + S + L +VN +ITD L +
Sbjct: 179 EMGFSTITEFELGSKIATVNASDETFFLCEHQKFGRKSAFQIVGLEEVNHIITDSKLPDE 238
Query: 233 TQELLSAS 240
T + SA+
Sbjct: 239 TCKKYSAA 246
>ref|YP_429481.1| transcriptional regulator, GntR family [Moorella thermoacetica ATCC
39073]
gb|ABC18938.1| transcriptional regulator, GntR family [Moorella thermoacetica ATCC
39073]
Length = 254
Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 6/241 (2%)
Query: 7 IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV-LNSGDDLNVRL 65
II +S + VN LS +L VS +TIR+DL+ LE +G L R HG AV + G D
Sbjct: 10 IIDKISSGMPLSVNELSRELGVSPMTIRRDLETLEREGFLTRTHGGAVPVRGGSDEEPSF 69
Query: 66 SYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
N K IA KAAELV D DTI++ +G+T LA++L + N+ V+TN+ IA
Sbjct: 70 MEKINKFSAEKLAIARKAAELVLDGDTILLNAGTTITALAQLL-KNHNNLTVVTNTVNIA 128
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ ++L GG + S VG L + ++ HV + F+G +G + + G +M
Sbjct: 129 MELAHSEGINLVLTGGNMRTKSYAMVGSLTERVLREIHVQKAFLGVNGISIEHGLTTPNM 188
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
+ M AA+ V++L D SK + +L ++ VN ITD + E L+ G
Sbjct: 189 TEAHTNSLMVAAADRVIVLADHSKIGRVTLSRFAPISAVNTFITDSNAPRDFIEELTRRG 248
Query: 242 L 242
+
Sbjct: 249 I 249
>ref|NP_928175.1| Putative aga operon transcriptional repressor [Photorhabdus
luminescens subsp. laumondii TTO1]
emb|CAE13127.1| Putative aga operon transcriptional repressor [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 257
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 5/230 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R E+II L+ + + V LS + VS VTIR DL LE KG R +G A+LN
Sbjct: 6 VKRREQIIDLLCHEGSVRVEHLSTRFGVSSVTIRNDLRYLEQKGCALRSYGGAMLNQQFA 65
Query: 61 LNVRLS----YNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ L N ++K RIA +AA+ VQD D ++++SGST +A L + +R++ V+TN
Sbjct: 66 FDRPLQDKGRINRDVKSRIAARAAQFVQDGDALILDSGSTTTQIAPFL-KERRDLVVMTN 124
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+ IA + + ++++LGG + NS GP ++ + + + +F+G DGF+ + G
Sbjct: 125 ALNIAYELAGFDRMEVMVLGGSVRQNSYSLYGPAAEQQLRQYRFDTLFLGVDGFDLEAGI 184
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
+ R M + A E++ + D+SKF + S ++R+ITD
Sbjct: 185 TTPHPGEAHLNRVMCEVAHEIIAVADASKFGRRSFCLIRQAGQIHRLITD 234
>ref|ZP_01643203.1| transcriptional regulator, DeoR family [Stenotrophomonas
maltophilia R551-3]
gb|EAX23979.1| transcriptional regulator, DeoR family [Stenotrophomonas
maltophilia R551-3]
Length = 275
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 7/246 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL----NS 57
+R ++I+QL+ + + V L E+ VS VTIR DL ES+GL R HG A L
Sbjct: 23 SRRQQILQLLIEHGSVQVADLVERFGVSAVTIRADLTHFESQGLANRTHGGATLVRTPPQ 82
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
D++ + + N +K I +AA LVQ D I+I+SGST LA L + R++ V+TN
Sbjct: 83 EQDIHEKDALNLPLKESIGARAARLVQPGDNIIIDSGSTTMTLARHL-RAHRDVTVMTNG 141
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IA + + ++L GG + S G + ++ + + +F+G DG + G
Sbjct: 142 LNIAWELANAAGITVLLTGGLLRQQSLSLQGSQAEASLNSYSFDTLFLGVDGLDLQFGLT 201
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLAD-VNRVITDQALDKQTQEL 236
D + M + A +V+LTD+SKF + SL H+++L D ++ +ITD +D T+E
Sbjct: 202 THDEAEARLNHRMVERARRIVVLTDASKFGRVSL-HRIALLDQIHAIITDAGIDDATREG 260
Query: 237 LSASGL 242
L G+
Sbjct: 261 LQRLGI 266
>ref|YP_174492.1| transcriptional regulator, DeoR family [Bacillus clausii KSM-K16]
dbj|BAD63531.1| DeoR family transcriptional regulator [Bacillus clausii KSM-K16]
Length = 251
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 6/241 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD- 59
+ R E+++ +++ K I V+ SE L V++ TIR DL++LE K LL+R HG AVL D
Sbjct: 4 LERHEKLLAYLAKHKSIRVSQASEWLGVTEKTIRLDLERLEEKKLLKRVHGGAVLMETDT 63
Query: 60 ---DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ R N K IAEKA L+ +ND I+++ GST LAE L + + VITN
Sbjct: 64 SLFPIQEREQRNEKEKHAIAEKAKALICENDVILLDGGSTTLALAERLGD--KPMTVITN 121
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IAN + + + Q+ILLGG S M+ +V +VF+G G + D G
Sbjct: 122 DIRIANALYEKEAIQLILLGGTRLGTSSALYSQQTTAMLKSLYVQKVFLGATGVSIDHGL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
+ E R + + ++L+DSSKF + L+ + +++ +++D LD +T+ +
Sbjct: 182 SILNSFHYEWKRAAINCGRKTILLSDSSKFGQVGLMRFADITEIDELVSDDLLDSETRSV 241
Query: 237 L 237
L
Sbjct: 242 L 242
>ref|ZP_01789542.1| L-fucose operon activator [Haemophilus influenzae 3655]
gb|EDJ92157.1| L-fucose operon activator [Haemophilus influenzae 3655]
Length = 249
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 6/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I++ V+Q+ K V L++ D+S TIR+DL+KL +KGLL R HG AV N DL
Sbjct: 4 RDELILKWVNQQGKASVIELAQHCDISVETIRRDLNKLANKGLLHRTHGGAVSNKTKDLG 63
Query: 63 ----VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R N KR IA+KA +L+ +N I +++ ST A ++ V+TNS
Sbjct: 64 SFFQTRKHINATAKRHIAQKALDLLYENAVIGLDASSTSWYFAYLMPDIP--CTVVTNSM 121
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
F N + S+ + I+ GG Y E GPL + ++ H+N G +++
Sbjct: 122 FNINALVNKSNVKTIVTGGVYSAKYEAFYGPLSEYLLQRLHINFSVFSCSGIDQNGNIWE 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + + R M +A+E +L DSSKF K SL+ L+ ++ + +DQ L Q+
Sbjct: 182 SNELNASLKRKMIEASERAYLLIDSSKFEKKSLIQLTDLSKIDTIFSDQPLPDNLQK 238
>ref|YP_076127.1| DeoR-family transcriptional regulator [Symbiobacterium thermophilum
IAM 14863]
dbj|BAD41283.1| DeoR-family transcriptional regulator [Symbiobacterium thermophilum
IAM 14863]
Length = 256
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 130/250 (52%), Gaps = 5/250 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG--- 58
RL++I++ + Q ++ V L++Q VS++TIR+DL++L +G L R +G A +G
Sbjct: 8 ERLDQILKHLQQHGQVQVRDLAQQFGVSEMTIRRDLERLAREGHLVRTYGGATAAAGLIG 67
Query: 59 -DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
+ + K RIA AA+LVQD D +++++GST ++ L + ++ + VIT
Sbjct: 68 EQPFAAKAVSHIEEKERIARAAADLVQDGDVVLLDAGSTTLAISRCL-RGRKGLTVITVD 126
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IA + ++I+ GG P +GP+ ++ + VN F+G+ + D G
Sbjct: 127 LKIALELCDEPGIEVIVTGGTAMPEIYSLLGPVAEQFLRGLTVNIAFLGSSAVDVDFGLT 186
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ + R M AA+ V++ DSSKF++ + L+ ++RVITD L +
Sbjct: 187 TPTLSKVPLKRAMIGAAQHAVLVADSSKFNRRATYQICPLSSLSRVITDDGLPPAAAAAI 246
Query: 238 SASGLVLDFV 247
G+ LD V
Sbjct: 247 RKGGITLDLV 256
>ref|YP_001179077.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|ABP65886.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 259
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 136/240 (56%), Gaps = 3/240 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN-SGDDL 61
RL++I +++ QKK +DV +L+E L+VS+VTIR+DLDKLES+G L + +G A+L L
Sbjct: 6 RLKKIKEILLQKKHVDVATLAELLNVSEVTIRRDLDKLESEGFLIKTYGGAILKEEATKL 65
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ + K IA+ + +++DN I++ G+ C L+ + + + K+NI V+TN +A
Sbjct: 66 LSPIIEENSEKEAIAKVCSYMIEDNQAIILTGGNICRLVPKYI-KDKKNIIVLTNDLLLA 124
Query: 122 NYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDM 181
+ S Q I+ GGY N+ + GP+L V++ F+ DG + + GF ++
Sbjct: 125 LECGKL-SIQTIVTGGYLIGNTFMLAGPMLVNPNMDIFVDKAFIEVDGVSLERGFTVNNV 183
Query: 182 MRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
+ +Y ++E +I+ DSSKF K SL + ++ +VI+D + + + +G
Sbjct: 184 EFANAYKYFKSISKETIIVADSSKFDKISLFQIAKVDEIKKVISDTNVPDEYKSFFFENG 243
>ref|YP_001391507.1| transcriptional regulator, DeoR family [Clostridium botulinum F
str. Langeland]
gb|ABS41103.1| transcriptional regulator, DeoR family [Clostridium botulinum F
str. Langeland]
Length = 252
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 6/229 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
+ R + II+ + + V ++ +LDVS +TIR+D D+L+ KG+L R HG AV S
Sbjct: 4 VEREQYIIEKLEDLGTVKVEDIANELDVSLMTIRRDFDRLQDKGILYRSHGGAVKRSTYL 63
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ N +K RIAEKA ++++ D+I +++G+T LA+VL + K +I VITN
Sbjct: 64 SEQAYDLKKISNIYVKERIAEKALSIIKEGDSIFLDAGTTTFELAKVLNKVK-DITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IA + Q ++ + ++GG Q + +GP E IS VN F+GT G + D
Sbjct: 123 DLKIALELYQ-NNVKAYIVGGKIQEETGCIIGPTADEFISNIKVNVAFLGTSGIDSDFRL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
++ + + +A V+LTDSSKF+K S V+ S+ VN VIT
Sbjct: 182 STPTFEKANLKKRIVKSASYSVLLTDSSKFNKESFVNIFSIESVNCVIT 230
>ref|ZP_01364842.1| hypothetical protein PaerPA_01001954 [Pseudomonas aeruginosa PACS2]
Length = 258
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 10/241 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL-NSGDDL 61
R I++L+ Q+++I V+ L+ L S+ TIR+DL L +GL+ + HG A L SG+
Sbjct: 6 RRRHILELLRQRERISVDELARTLSTSQETIRRDLTALAEQGLVSKFHGGAALPPSGEHE 65
Query: 62 NV---RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
N R++ + KR +A AA L D+I I++G+T L A L + + ++ VITNS
Sbjct: 66 NAFQTRMNEHAQEKRAVARYAAGLFGPGDSIFIDTGTTTLLFARELAR-QSHLTVITNSL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + S + ++GG Y+P SE VG L E I+ F+ + N D G M
Sbjct: 125 LIAGSV-GASGNRAFMIGGEYRPESEQNVGALAIEQIARFNAEHAVITVGALNGD-GAMD 182
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ +E R M A ++ ++ DSSK + +L L+ +NR++ D+ K T EL
Sbjct: 183 FSIEEAEIARAMIAQARQLTVIADSSKLGRRALFQVFPLSRINRLVVDR---KPTGELWE 239
Query: 239 A 239
A
Sbjct: 240 A 240
>ref|YP_132707.1| hypothetical transcriptional regulator GlpR [Photobacterium
profundum SS9]
emb|CAG22907.1| hypothetical transcriptional regulator GlpR [Photobacterium
profundum SS9]
Length = 264
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R E I+ + K DVN L+++ VS VTIR DL+ LE KG + R +G A+LN
Sbjct: 16 RREEILAHIRTHNKGDVNKLAQKYKVSTVTIRNDLNYLEKKGCVTRCYGGALLNDLFTFD 75
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
LN + N NIK R+ AA L+ DT++++SGST +A L Q KR + ++TN
Sbjct: 76 QALNDKKKINSNIKARLGAYAASLINHGDTVILDSGSTTEQIAYHL-QDKRQLTIMTNGI 134
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + +++ GG + S G +E+++ F N++F+G DGF+ + G
Sbjct: 135 NIAYQLASQPDIDVMVTGGTIRRKSYSLHGSNGEELLTGFRFNKLFIGVDGFDINTGITT 194
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
++ R M +AA+ ++ LTDSSKF + S +N +ITD + L
Sbjct: 195 PHQGEADINRKMVEAAQTIIALTDSSKFGRQSFCLIARPHQLNILITDSGIPPHYHTELI 254
Query: 239 ASGL 242
G+
Sbjct: 255 QMGV 258
>ref|YP_879103.1| transcriptional regulator, DeoR family [Clostridium novyi NT]
gb|ABK61730.1| transcriptional regulator, DeoR family [Clostridium novyi NT]
Length = 252
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 138/238 (57%), Gaps = 16/238 (6%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R II+ +S+ I V L+ +L VS +TIR+DLD+L+ KG+L R HG AVL +
Sbjct: 6 RESYIIEKLSETGTIKVEDLASELGVSLMTIRRDLDRLQDKGVLYRSHGGAVLRAVYPME 65
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+V+ N + K +IA A EL+ + DTI +++G+T LA++L +TK+N+ VIT+
Sbjct: 66 QSYDVKKISNIDAKNKIASAALELINEGDTIFLDAGTTTLELAKLL-KTKKNLTVITDDL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + + S+ + ++GG Q ++ +GP ++ I VN F+GT D G++
Sbjct: 125 KIALELYK-SNVETYIVGGRVQKDTACIIGPTAEDFIKNIKVNLCFLGTSSITSD-GYLS 182
Query: 179 -----KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
K ++ E VR A+ V++ DSSKF + S V+ LS+ ++N +IT++ D+
Sbjct: 183 TPTFEKAYLKREVVR----ASSYSVLMVDSSKFKRESFVNILSIKEINCIITNKQFDE 236
>ref|NP_250181.1| probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
ref|ZP_00970235.1| COG1349: Transcriptional regulators of sugar metabolism
[Pseudomonas aeruginosa C3719]
ref|ZP_00976414.1| COG1349: Transcriptional regulators of sugar metabolism
[Pseudomonas aeruginosa 2192]
ref|YP_791763.1| putative transcriptional regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gb|AAG04879.1|AE004578_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
gb|ABJ10670.1| putative transcriptional regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gb|EAZ52029.1| hypothetical protein PACG_00449 [Pseudomonas aeruginosa C3719]
gb|EAZ57280.1| hypothetical protein PA2G_00467 [Pseudomonas aeruginosa 2192]
Length = 258
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 10/241 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL-NSGDDL 61
R I++L+ Q+++I V+ L+ L S+ TIR+DL L +GL+ + HG A L SG+
Sbjct: 6 RRRHILELLRQRERISVDELARTLSTSQETIRRDLAALAEQGLVSKFHGGAALPPSGEHE 65
Query: 62 NV---RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
N R++ + KR +A AA L D+I I++G+T L A L + + ++ VITNS
Sbjct: 66 NAFQTRMNEHAQEKRAVARYAAGLFGPGDSIFIDTGTTTLLFARELAR-QSHLTVITNSL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + S + ++GG Y+P SE VG L E I+ F+ + N D G M
Sbjct: 125 LIAGSV-GASGNRAFMIGGEYRPESEQNVGALAIEQIARFNAEHAVITVGALNGD-GAMD 182
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ +E R M A ++ ++ DSSK + +L L+ +NR++ D+ K T EL
Sbjct: 183 FSIEEAEIARAMIAQARQLTVIADSSKLGRRALFQVFPLSRINRLVVDR---KPTGELWE 239
Query: 239 A 239
A
Sbjct: 240 A 240
>ref|ZP_02204610.1| transcriptional regulator, DeoR family [Dehalococcoides sp. VS]
gb|EDO69477.1| transcriptional regulator, DeoR family [Dehalococcoides sp. VS]
Length = 260
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 129/240 (53%), Gaps = 5/240 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL----NS 57
+R ++I+Q + ++ + V L E+ +VS VTIR D+ +ES+GL R HG A L
Sbjct: 8 SRRQQILQCLIEQGSVQVAELVERFEVSAVTIRADVSHIESQGLATRTHGGATLVRTPPQ 67
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
D++ + + N +K RI +AA+LVQ + I+I+SGST LA L + R++ V+TN
Sbjct: 68 EQDIHEKDALNLPLKERIGARAAQLVQAGENIIIDSGSTTMTLARHL-RGHRDVTVMTNG 126
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IA + +++L GG + S G + ++ + + +F+G DG + G
Sbjct: 127 LNIAWELANAPGVEVLLSGGLLRKQSLSLQGSQAEASLNAYSFDTLFLGVDGLDLQFGLT 186
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
D + M + A +V+LTD+SKF + SL L ++ +ITD +D++ +E L
Sbjct: 187 THDEAEARLNHRMVERARRIVVLTDASKFGRVSLHRIARLDQIHAIITDPGIDERYREGL 246
>ref|YP_001781820.1| transcriptional regulator, DeoR family [Clostridium botulinum B1
str. Okra]
gb|ACA46496.1| transcriptional regulator, DeoR family [Clostridium botulinum B1
str. Okra]
Length = 252
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 6/229 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
+ R + II+ + + V ++ +LDVS +TIR+D D+L+ KG+L R HG AV S
Sbjct: 4 VEREQYIIEKLEDLGTVKVEDIANELDVSLMTIRRDFDRLQDKGILYRSHGGAVKRSTYL 63
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ N +K +IAEKA ++++ D+I +++G+T LA+VL + K +I VITN
Sbjct: 64 SEQAYDLKKISNIYVKEKIAEKALSIIKEGDSIFLDAGTTTFELAKVLNKVK-DITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IA + Q ++ + ++GG Q + +GP E IS VN F+GT G + D
Sbjct: 123 DLKIALELYQ-NNVKAYIVGGKIQEETGCIIGPTADEFISNIKVNVAFLGTSGIDSDFRL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
++ + + +A V+LTDSSKF+K S V+ S+ VN VIT
Sbjct: 182 STPTFEKANLKKRIVKSASYSVLLTDSSKFNKESFVNIFSIESVNCVIT 230
>ref|YP_001478806.1| transcriptional regulator, DeoR family [Serratia proteamaculans
568]
gb|ABV41678.1| transcriptional regulator, DeoR family [Serratia proteamaculans
568]
Length = 256
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 5/230 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R E II + ++ + V LS Q VS VTIR DL +LE G R +G A+LN
Sbjct: 5 LKRRELIIDQLCREGSVRVEQLSAQFSVSSVTIRSDLRQLEKSGCAVRAYGGAMLNKQFA 64
Query: 61 LNVRLS----YNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ L N ++K IA AAELV+D D I+++SGST + +A+ L K+++ V+TN
Sbjct: 65 FDRPLQDKGRLNRDVKYAIACAAAELVKDGDAIILDSGSTTSQMAQQLV-GKKDLVVMTN 123
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+ IA + ++++GG + S GP ++ + F +++F+G DGF+ G
Sbjct: 124 ALNIAFELANNEQVDLMVVGGSVRRKSWSLYGPAAEQHMRQFRFDKLFLGVDGFDLISGI 183
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
D ++ R M D A EV+ + D+SKF +TS + + R++TD
Sbjct: 184 TTPDPGEAQLNRAMCDVAREVIAVADASKFGRTSFCMIREIGQIQRLVTD 233
>ref|ZP_02614557.1| transcriptional regulator, DeoR family [Clostridium botulinum NCTC
2916]
gb|EDT81179.1| transcriptional regulator, DeoR family [Clostridium botulinum NCTC
2916]
Length = 252
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 6/229 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
+ R + II+ + + V ++ +LDVS +TIR+D D+L+ KG+L R HG AV S
Sbjct: 4 VEREQYIIEKLEDLGTVKVEDIANELDVSLMTIRRDFDRLQDKGILYRSHGGAVKRSTYL 63
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ N +K +IAEKA ++++ D+I +++G+T LA+VL + K +I VITN
Sbjct: 64 SEQAYDLKKISNIYVKEKIAEKALSIIKEGDSIFLDAGTTTFELAKVLNKIK-DITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IA + Q ++ + ++GG Q + +GP E IS VN F+GT G + D
Sbjct: 123 DLKIALELYQ-NNVKAYIVGGKIQEETGCIIGPTADEFISNIKVNVAFLGTSGIDSDFRL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
++ + + +A V+LTDSSKF+K S V+ S+ VN VIT
Sbjct: 182 STPTFEKANLKKRIVKSASYSVLLTDSSKFNKESFVNIFSIESVNCVIT 230
>ref|NP_471795.1| hypothetical protein lin2465 [Listeria innocua Clip11262]
ref|NP_465889.1| hypothetical protein lmo2366 [Listeria monocytogenes EGD-e]
ref|YP_014926.1| transcriptional regulator, DeoR family [Listeria monocytogenes str.
4b F2365]
ref|ZP_00232077.1| transcriptional regulator, DeoR family [Listeria monocytogenes str.
4b H7858]
ref|ZP_00233449.1| transcriptional regulator, DeoR family [Listeria monocytogenes str.
1/2a F6854]
ref|YP_850512.1| transcriptional regulator, DeoR family [Listeria welshimeri serovar
6b str. SLCC5334]
ref|ZP_01928290.1| hypothetical protein LMHG_01311 [Listeria monocytogenes FSL N1-017]
ref|ZP_01930926.1| hypothetical protein LMIG_02769 [Listeria monocytogenes FSL N3-165]
ref|ZP_01933513.1| hypothetical protein LMMG_01872 [Listeria monocytogenes F6900]
ref|ZP_01936854.1| hypotehtical protein [Listeria monocytogenes J0161]
ref|ZP_01939071.1| hypothetical protein LMPG_02871 [Listeria monocytogenes J2818]
ref|ZP_01942416.1| hypothetical protein LMRG_02711 [Listeria monocytogenes 10403S]
ref|ZP_01944798.1| hypotehtical protein [Listeria monocytogenes HPB2262]
ref|ZP_02321063.1| transcriptional regulator, DeoR family protein [Listeria
monocytogenes FSL J2-064]
emb|CAD00444.1| lmo2366 [Listeria monocytogenes]
emb|CAC97692.1| lin2465 [Listeria innocua]
gb|AAT05103.1| transcriptional regulator, DeoR family [Listeria monocytogenes str.
4b F2365]
gb|EAL06651.1| transcriptional regulator, DeoR family [Listeria monocytogenes str.
1/2a F6854]
gb|EAL08078.1| transcriptional regulator, DeoR family [Listeria monocytogenes str.
4b H7858]
emb|CAK21733.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
gb|EBA18890.1| hypotehtical protein [Listeria monocytogenes J0161]
gb|EBA21730.1| hypothetical protein LMRG_02711 [Listeria monocytogenes 10403S]
gb|EBA25074.1| hypothetical protein LMPG_02871 [Listeria monocytogenes J2818]
gb|EBA27916.1| hypothetical protein LMHG_01311 [Listeria monocytogenes FSL N1-017]
gb|EBA30936.1| hypothetical protein LMIG_02769 [Listeria monocytogenes FSL N3-165]
gb|EBA33561.1| hypothetical protein LMMG_01872 [Listeria monocytogenes F6900]
gb|EBA36175.1| hypotehtical protein [Listeria monocytogenes HPB2262]
Length = 252
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 130/246 (52%), Gaps = 6/246 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---- 56
+ R I+Q V +K V+ L++ +V + TIR+DL LE L+R HG ++
Sbjct: 4 IERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLEKDKKLKRTHGGVMIEEKVV 63
Query: 57 SGDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
S + R Y K+RIA AA +V+D DTI++++G+T +A L + + + VITN
Sbjct: 64 SEPNWKKRSEVRYEEKQRIATLAATMVKDGDTIILDAGTTTGHIATAL-KDRSKLTVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+A+ +R +S ++I+ GG P + + G + + HV++ FV T + D G
Sbjct: 123 DINVASIMR-FSPSKVIVTGGVIYPETFILNGMITSGTLQSIHVHKAFVTTPALDIDKGL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
M D + M +A+EV+++TD +KF + SL +L +++ +IT + +D +E
Sbjct: 182 MHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYKYAALDEISSIITGKEIDPVLKEQ 241
Query: 237 LSASGL 242
G+
Sbjct: 242 FEEKGM 247
>ref|ZP_02995619.1| hypothetical protein CLOSPO_02741 [Clostridium sporogenes ATCC
15579]
gb|EDU36573.1| hypothetical protein CLOSPO_02741 [Clostridium sporogenes ATCC
15579]
Length = 252
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 6/229 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
+ R + II+ + + V ++ +LDVS +TIR+D D+L+ KG+L R HG AV S
Sbjct: 4 VEREQYIIEKLEDLGTVKVEDIANELDVSLMTIRRDFDRLQDKGILYRSHGGAVKRSTYL 63
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ N +K +IAEKA ++++ D+I +++G+T LA+VL + K +I VITN
Sbjct: 64 SEQAYDLKKISNIYVKEKIAEKALSIIKEGDSIFLDAGTTTFELAKVLNKVK-DITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IA + Q ++ + ++GG Q + +GP E IS VN F+GT G + D
Sbjct: 123 DLKIALELYQ-NNVKAYIVGGKIQEETGCIIGPTADEFISNIKVNVAFLGTSGIDSDFRL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
++ + + +A V+LTDSSKF+K S V+ S+ VN +IT
Sbjct: 182 STPTFEKANLKKRIVKSASYSVLLTDSSKFNKESFVNIFSIESVNCIIT 230
>ref|YP_001335365.1| putative bacterial regulatory protein, DeoR [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gb|ABR77135.1| putative bacterial regulatory protein, DeoR [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 257
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 132/233 (56%), Gaps = 7/233 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL- 61
R E+++ ++ +K+K+ V+ + + +VS TIR DL +LE +GLL R HG AVL +
Sbjct: 6 RQEKLLGILREKRKVAVSEMCDVFNVSGATIRADLRQLEEEGLLTRTHGGAVLRTRASFE 65
Query: 62 ---NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+ R N + K RI ++AA LV+D D I++++G+T +A + + ++N+ V+TN
Sbjct: 66 QASDAREIVNLSAKERIGQRAAALVEDGDIIVLDTGTTTLHIARNI-RDRQNVTVVTNDY 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + S Q ILLGG + V + ++ +V++ F+GT+ + G
Sbjct: 125 QIARELEASPSIQTILLGGIVKKGYHCVVAINGRSILDTLNVDKAFMGTNSLSLKHGACV 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLAD-VNRVITDQALD 230
D+M +E R M + A +V+I+ D SK + TSL Q + AD ++ V+ D+ D
Sbjct: 185 ADIMLAETKRGMVEHASQVIIVCDYSKLNNTSLA-QFTAADRIDTVVVDRLPD 236
>gb|EAZ02392.1| hypothetical protein OsI_023624 [Oryza sativa (indica
cultivar-group)]
Length = 1123
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R E II L+ + + V LS+Q VS VTIR DL LE KG R +G A+LN
Sbjct: 8 RREHIIDLLCEHGSVRVEQLSKQFAVSTVTIRNDLRFLERKGCALRAYGGAMLNQQFAFD 67
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L + N ++K IA AA V+D + ++++SGST A + L + +R++ V+TN+
Sbjct: 68 RPLRDKGRLNRDVKTLIANAAAGYVRDGEALILDSGSTTAQIVPFL-KGRRDLVVMTNAL 126
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + ++++LGG + NS GP ++ + + +++F+G DGF+ G
Sbjct: 127 NIAYELSGNDGVEVMVLGGSVRRNSYSLYGPAAEQQLRQYRFDKLFLGVDGFDLSAGITT 186
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ R M + A E++ + D+SKF + S ++R+ITD L + L+
Sbjct: 187 PHPGEAHLNRVMCEVAREIIAVADASKFGRKSFCMIREAGQIHRLITDSRLPDDYERALT 246
Query: 239 ASGL 242
G+
Sbjct: 247 ELGV 250
>ref|YP_872479.1| transcriptional regulator, DeoR family [Acidothermus cellulolyticus
11B]
gb|ABK52493.1| transcriptional regulator, DeoR family [Acidothermus cellulolyticus
11B]
Length = 253
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 7 IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNSGDDLN 62
I +L ++ ++D +L+E+L VS TIR+DL LE +GL+RR HG A+ L L
Sbjct: 10 IAELARKEGRVDAAALAERLKVSTETIRRDLTILERRGLVRRTHGGAIPVQRLGFDPALG 69
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
+R S K RI + A + + +I++++G+T A LAE + +R + V+TNS IA
Sbjct: 70 MRTSVMVEEKERIGKAAVDYLPAEGSILLDAGTTTAALAEHIPGDRR-LTVLTNSPPIAL 128
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
+ + +LGG +P S VGP ++ V+ F+GT+G + + G D
Sbjct: 129 SLVNRPDVSLFMLGGALRPRSLSIVGPWANRSLADVCVDVAFLGTNGLSVERGLTTTDQT 188
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
+ + M AA +VV+L D SK H LADV+ VIT
Sbjct: 189 EAMTKQAMISAARQVVVLCDHSKIGVDDFFHVAPLADVDVVIT 231
>ref|YP_001787586.1| transcriptional regulator, DeoR family [Clostridium botulinum A3
str. Loch Maree]
gb|ACA55852.1| transcriptional regulator, DeoR family [Clostridium botulinum A3
str. Loch Maree]
Length = 252
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 6/229 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
+ R + II+ + + V ++ +LDVS +TIR+D D+L+ KG+L R HG AV S
Sbjct: 4 VEREQYIIEKLENLGTVKVEDIANELDVSLMTIRRDFDRLQDKGILYRSHGGAVKRSTYL 63
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ N +K +IAEKA ++++ D+I +++G+T LA++L + K +I VITN
Sbjct: 64 SEQAYDLKKISNIYVKEKIAEKALSIIKEGDSIFLDAGTTTFELAKMLNKVK-DITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IA + Q ++ + ++GG Q + +GP E IS VN F+GT G + D
Sbjct: 123 DLKIALELYQ-NNVKAYIVGGKIQEETGCIIGPTADEFISNIKVNVAFLGTSGIDSDFRL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
++ + + +A V+LTDSSKF+K S V+ S+ VN VIT
Sbjct: 182 STPTFEKANLKKRIVKSASYSVLLTDSSKFNKESFVNIFSIESVNCVIT 230
>ref|YP_764719.1| putative deoR family transcriptional regulator [Rhizobium
leguminosarum bv. viciae 3841]
emb|CAK11920.1| putative deoR family transcriptional regulator [Rhizobium
leguminosarum bv. viciae 3841]
Length = 258
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 132/256 (51%), Gaps = 11/256 (4%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS 57
M R ER I+ L+ + K +D++ L+++ VSK+TI +DLD LE G+LR+ G A +++
Sbjct: 1 MRREERQQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEQAGVLRKVRGGATIDA 60
Query: 58 G----DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKV 113
G D +R K +AE A ELV+ T+M+ GS A+L E+L Q KR + +
Sbjct: 61 GTQFESDFRIRERQGNEAKLAMAETALELVEPGMTVMVNDGSMAAVLGEMLLQ-KRPLTL 119
Query: 114 ITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
ITN+ I ++ + +I LGG Y +G + +E +S + F+ T +
Sbjct: 120 ITNNAAIMERLKGETGITLIALGGIYSAKFNAYLGVVTEEALSRLRADIAFISTPAVSGG 179
Query: 174 LGF-MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
L + M +++R++ R M ++ +L + + T+L LAD + VITD A D
Sbjct: 180 LAYHMDDNVVRAK--RAMIASSTRTCLLVNHQRIGHTALHVMADLADFDTVITDSAPDAA 237
Query: 233 TQELLSASGLVLDFVS 248
E +G+ L S
Sbjct: 238 VLEEFEQAGITLTIAS 253
>ref|YP_001590232.1| hypothetical protein SPAB_04072 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gb|ABX69399.1| hypothetical protein SPAB_04072 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 257
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV--- 54
MN ER I+ L++ + + V LS +S+VTIR DL LE KGL+ R HG A
Sbjct: 1 MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG 60
Query: 55 --LNSGDDLNVRLSYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTK 108
L GD+ V L Y + K+RIA+ AA +V++ TI+++SGST L+AE L + K
Sbjct: 61 SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALAR-K 119
Query: 109 RNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTD 168
NI VITNS A + + +++ GG + + G + + + + +FVG D
Sbjct: 120 SNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGTIAERSLHGISADVMFVGAD 179
Query: 169 GFNKDLGFMGKDMMRS-EGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
G + G + S GV MA AA +V+ + D++KF++ L + +N VITD
Sbjct: 180 GIDATNGITTFNEGYSISGV--MAAAAHKVIAVLDATKFNRRGFNQVLPMDKINCVITDD 237
Query: 228 ALDKQTQELLSASGLVLDFV 247
+ KQ + L+ +G+ L V
Sbjct: 238 TISKQDKAALAKTGVELMIV 257
>ref|YP_001179179.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|ABP65988.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 253
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 137/249 (55%), Gaps = 5/249 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R ++I +++ +KK + V L +VS TIR+DL KLE +G++ + +G A+L G
Sbjct: 6 RRQKIKEILMEKKSVTVTELCNIFNVSDETIRRDLKKLEQEGIIEKNYGGAILKEGFTIV 65
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
++ R K +IA++A + +++ I++++G+T +A L +T +NI VITN
Sbjct: 66 PPISQRAKEFIQEKEKIAKEAVKRIKEGMIIILDTGTTTYQIARNL-KTAQNITVITNGV 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + S+ + L+GG + ++ VGP ++ + F + F+GT G + + G
Sbjct: 125 NIINELVTNSNINLFLVGGKVKSSNFSIVGPEAQKSFTQFSADIAFIGTSGISLEKGLTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
D+ +E + M ++++EV+++ DSSKF K ++V SL V +IT +D + E
Sbjct: 185 SDIFEAEVKKAMIESSKEVIVVADSSKFLKNAMVSFCSLNKVTEIITSGEIDSELVEKFR 244
Query: 239 ASGLVLDFV 247
G+ L V
Sbjct: 245 QKGVKLTIV 253
>ref|YP_001254704.1| DeoR family regulatory proteins [Clostridium botulinum A str. ATCC
3502]
ref|YP_001384462.1| transcriptional regulator, DeoR family [Clostridium botulinum A
str. ATCC 19397]
emb|CAL83751.1| DeoR family regulatory proteins [Clostridium botulinum A str. ATCC
3502]
gb|ABS33795.1| transcriptional regulator, DeoR family [Clostridium botulinum A
str. ATCC 19397]
Length = 252
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 6/229 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
+ R + II+ + + V ++ +L+VS +TIR+D D+L+ KG+L R HG AV S
Sbjct: 4 VEREQYIIEKLEDLGTVKVEDIANELNVSLMTIRRDFDRLQDKGILYRSHGGAVKRSTYL 63
Query: 59 --DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ N +K +IAEKA ++++ D+I +++G+T LA+VL + K +I VITN
Sbjct: 64 SEQAYDLKKISNIYVKEKIAEKALSIIKEGDSIFLDAGTTTFELAKVLNKVK-DITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
IA + Q ++ + ++GG Q + +GP E IS VN F+GT G + D
Sbjct: 123 DLKIALELYQ-NNVKAYIVGGKIQEETGCIIGPTADEFISNIKVNVAFLGTSGIDSDFRL 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVIT 225
++ + + +A V+LTDSSKF+K S V+ S+ VN VIT
Sbjct: 182 STPTFEKANLKKRIVKSASYSVLLTDSSKFNKESFVNIFSMESVNCVIT 230
>ref|ZP_02436423.1| hypothetical protein BACSTE_02681 [Bacteroides stercoris ATCC
43183]
gb|EDS14991.1| hypothetical protein BACSTE_02681 [Bacteroides stercoris ATCC
43183]
Length = 261
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 8/249 (3%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS 57
M + ER I++L+ Q I V L+ L+VS VTIRKDL LE + L R HG A+L
Sbjct: 1 MTKEERQSIILELLIQHNSILVTDLATHLNVSSVTIRKDLTDLEREKKLYRNHGKAILID 60
Query: 58 G--DDLNVRLSYNYNI--KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKV 113
D+ NV + KR I KAA L+ D+I+I SG+T LA + + V
Sbjct: 61 PYIDNRNVSEKEKLYVEEKRLIGMKAASLITPKDSILIASGTTMHALARSIVPADE-LTV 119
Query: 114 ITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
IT S ++N + + II LGG + +S VG + +++ F +++F+G DG + D
Sbjct: 120 ITASMEVSNILASEKNIYIIQLGGILRHSSLSVVGKYAENILADFSCSKLFIGVDGIDLD 179
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
G +MM + R M A++ ++L DSSKF + + DV+ +ITD + T
Sbjct: 180 FGITTTNMMEASLNRVMMQTAQKTIVLADSSKFGRRGFSKIADMEDVDHIITDSRIPPST 239
Query: 234 QELLSASGL 242
L G+
Sbjct: 240 ALRLEEMGI 248
>ref|YP_001336673.1| regulator for gut (srl), glucitol operon [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gb|ABR78443.1| regulator for gut (srl), glucitol operon [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 257
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 8/247 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I++ + + K V L++ D + TIRKDL LE+ G + R +G VLN D+ +
Sbjct: 6 RQAAILEFLQSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVIRTYGGVVLNK-DEAD 64
Query: 63 VRLSY----NYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+ + N + K +IAE A + D D+I++++GST + +L NI V+TNS
Sbjct: 65 PPIDHKTLINTHKKAQIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSHFN-NITVMTNSL 123
Query: 119 FIANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
I N + ++ + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 124 HIVNALSEFDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNAGVT 183
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ + + + M +AA EV+++ DSSKF + S L V+++ITD +D + Q L
Sbjct: 184 TFNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITDADIDPEFQRAL 242
Query: 238 SASGLVL 244
A G+ +
Sbjct: 243 EAKGIAV 249
>ref|YP_001480073.1| transcriptional regulator, DeoR family [Serratia proteamaculans
568]
gb|ABV42945.1| transcriptional regulator, DeoR family [Serratia proteamaculans
568]
Length = 257
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R E II L+ + + V LS+Q VS VTIR DL LE KG R +G A+LN
Sbjct: 8 RREHIIDLLCEHGSVRVEQLSKQFAVSTVTIRNDLRFLERKGCALRAYGGAMLNQQFAFD 67
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L+ + N ++K +IA AA V+D D ++++SGST + L + +R++ V+TN+
Sbjct: 68 RPLHDKGRLNRDVKSQIASVAASYVRDGDALILDSGSTTTQIVPFL-KGRRDLVVMTNAL 126
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + ++++LGG + NS GP ++ + + +++F+G DGF+ G
Sbjct: 127 NIAYELSGNDGVEVMVLGGSVRRNSYSLYGPAAEQQLRQYRFDKLFLGVDGFDLVAGITT 186
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ R M + A E++ + D+SKF + S ++R+ITD L + L+
Sbjct: 187 PHPGEAHLNRVMCEVAREIIAVADASKFGRKSFCMIREAGQIHRLITDSLLPDDYERALT 246
Query: 239 ASGL 242
G+
Sbjct: 247 ELGV 250
>ref|YP_001181210.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|ABP68019.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 252
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 11/241 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R +I Q++ + K + VN L++ VS+ TIR+DL++LES G+++R HG AV N
Sbjct: 6 RKSKIAQMIKEGKSVKVNELAKLFGVSESTIRRDLNELESLGIVKRTHGGAVNNFATTF- 64
Query: 63 VRLSYNYNIKRRIAEK------AAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
LS+ R EK AA+ ++D DTI+++SG+T +A + +N+ VITN
Sbjct: 65 -ELSFAEKEDRFAKEKEYIGKLAAKYIEDGDTIILDSGTTTQYIARNI--KAKNVIVITN 121
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S IAN + ++I+ GG + ++ VG + + + F ++ F+ +G + + G
Sbjct: 122 SVNIANELSNREDIEVIVTGGVIRSKTKALVGDITQSTLKQFRCDKAFIAANGVSIEFGV 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNR-VITDQALDKQTQE 235
+ + R M + A+EV ++ DSSKF + + + +N +ITD+ +KQ QE
Sbjct: 182 TTPTHLEAAVKRTMIENAKEVFLVADSSKFGQVTFALICPVDRLNNYIITDKMDEKQKQE 241
Query: 236 L 236
Sbjct: 242 F 242
>ref|YP_177106.1| transcriptional regulator of sugar metabolism [Bacillus clausii
KSM-K16]
dbj|BAD66145.1| transcriptional regulator of sugar metabolism [Bacillus clausii
KSM-K16]
Length = 262
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 139/250 (55%), Gaps = 12/250 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + I+ ++ + K+I V LSE+L+VS+ T+R DL++LE +G L R HG A+L DD+
Sbjct: 6 RRDSILDILRESKRITVKELSERLNVSEATLRMDLNQLEKQGKLERTHGGAILI--DDMP 63
Query: 63 V----RLSYNY----NIKRR--IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIK 112
S++Y N K + +AE+A++++ D D I++++ ST LA+VL +
Sbjct: 64 AVSEKETSFSYRKQQNTKEKTLLAEEASKMLSDGDCILLDASSTALELAKVLNSKTLKLT 123
Query: 113 VITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNK 172
V+T+ + A +R + + +ILLGG + S G L ++ +V+ +F +GF+K
Sbjct: 124 VVTSGVYTALELRDHPTITVILLGGVLRKGSSSLEGLLGASILDEINVDYLFTSANGFSK 183
Query: 173 DLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
G ++ E + M + +VV L D SK KTS+ L +++ VIT++ +D
Sbjct: 184 YAGLTDFNVYEVELKKRMVEKVNQVVALIDHSKIGKTSIATFAQLDEISLVITNKEIDAD 243
Query: 233 TQELLSASGL 242
+L+ +G+
Sbjct: 244 FSAVLTEAGV 253
>ref|ZP_02418845.1| hypothetical protein ANACAC_01429 [Anaerostipes caccae DSM 14662]
gb|EDR97807.1| hypothetical protein ANACAC_01429 [Anaerostipes caccae DSM 14662]
Length = 257
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 6 RIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL--NSGD---D 60
+I+ L+ ++K++ V L+++ +VS TIR++L+ + GL+ R HG A++ N D D
Sbjct: 9 KILNLLDEEKEVSVEDLAQKFNVSASTIRRELNNMNQLGLIIRTHGGALVQVNKNDEILD 68
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
R +NY+ K IA+KAA ++D+D + + S S L+ L T +NI V TNS I
Sbjct: 69 HTKRRFHNYHEKMEIAKKAASYIRDDDFVFLHSSSITDLMPPFL--TSKNITVATNSLNI 126
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
A + CQ+ILLGG Y +E G + E I H + F+G +G + +GF
Sbjct: 127 ARSLSSSDDCQLILLGGIYYKYAEAIEGTMTVEQIRSMHFQKCFLGANGVDLQMGFSTIT 186
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
DA++E L + KF + S ++L + +ITD L
Sbjct: 187 EFELGSKVATIDASDETFFLCEHQKFGRKSAFQIVALDCADHIITDSKL 235
>ref|ZP_02646640.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
ref|ZP_02831667.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
Length = 257
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 138/260 (53%), Gaps = 16/260 (6%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV--- 54
MN ER I+ L++ + + V LS +S+VTIR DL LE KGL+ R HG A
Sbjct: 1 MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG 60
Query: 55 --LNSGDDLNVRLSYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTK 108
L GD+ V L Y + K+RIA+ AA +V++ TI+++SGST L+AE L + K
Sbjct: 61 SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALAR-K 119
Query: 109 RNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTD 168
NI VITNS A + + +++ GG + + G + + + + +FVG D
Sbjct: 120 SNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGTIAERSLHGISADVMFVGAD 179
Query: 169 GFNKDLGFMGKDMMRS-EGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
G + G + S GV MA AA +V+ + D++KF++ L + ++ VITD
Sbjct: 180 GIDATNGITTFNEGYSISGV--MAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDD 237
Query: 228 ALDKQTQELLSASGLVLDFV 247
++ KQ + L+ +G+ L V
Sbjct: 238 SISKQDKAALAKTGVELMIV 257
>ref|YP_302271.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
dbj|BAE19326.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 260
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 130/231 (56%), Gaps = 9/231 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---D 59
R + II + KK ++ L+ + +V + TIR+DL+KLE ++R HG VLN D
Sbjct: 6 REQFIITFLKTNKKATIHDLALEFNVHEATIRRDLNKLEQYNQIKRTHGGVVLNDSEVWD 65
Query: 60 DLNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
+LN R + Y+ K I KAAE V++ DT+ I+SGST A L Q K N+ +ITN
Sbjct: 66 ELNFDDRETSYYDEKVAIGLKAAEFVENGDTLFIDSGSTTIHFARALTQ-KSNLTIITND 124
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IA+ ++ ++ QII+ GG ++ + G + E + LF+ +++F+ T + + G
Sbjct: 125 IHIASILKS-TANQIIVTGGILYQDNYLLNGMITNETLKLFNPSKLFLATPAIDLEKGIT 183
Query: 178 G-KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
D + S ++ M A+ V +LTDSSKF K +L + S ++ +ITDQ
Sbjct: 184 HFNDTLASTKIQ-MVKQAKAVYVLTDSSKFDKVALYNVCSSDTIDVLITDQ 233
>ref|NP_457646.1| galactitol utilization operon repressor [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
ref|NP_806860.1| galactitol utilization operon repressor [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
ref|YP_152272.1| galactitol utilization operon repressor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
ref|YP_218190.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
ref|ZP_02345842.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
ref|ZP_02562530.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
ref|ZP_02565735.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
ref|ZP_02653007.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
ref|ZP_02656929.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
ref|ZP_02663022.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
ref|ZP_02668030.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
ref|ZP_02672060.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
ref|ZP_02679878.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
ref|ZP_02684699.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
ref|ZP_02706386.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
pir||AB0899 galactitol utilization operon repressor [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
emb|CAD07784.1| galactitol utilization operon repressor [Salmonella enterica subsp.
enterica serovar Typhi]
gb|AAO70720.1| galactitol utilization operon repressor [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
gb|AAV78960.1| galactitol utilization operon repressor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gb|AAX67109.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
Length = 257
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV--- 54
MN ER I+ L++ + + V LS +S+VTIR DL LE KGL+ R HG A
Sbjct: 1 MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG 60
Query: 55 --LNSGDDLNVRLSYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTK 108
L GD+ V L Y + K+RIA+ AA +V++ TI+++SGST L+AE L + K
Sbjct: 61 SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALAR-K 119
Query: 109 RNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTD 168
NI VITNS A + + +++ GG + + G + + + + +FVG D
Sbjct: 120 SNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGTIAERSLHGISADVMFVGAD 179
Query: 169 GFNKDLGFMGKDMMRS-EGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
G + G + S GV MA AA +V+ + D++KF++ L + ++ VITD
Sbjct: 180 GIDATNGITTFNEGYSISGV--MAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDD 237
Query: 228 ALDKQTQELLSASGLVLDFV 247
+ KQ + L+ +G+ L V
Sbjct: 238 TISKQDKAALAKTGVELMIV 257
>ref|NP_462175.1| galactitol utilization operon transcriptional repressor [Salmonella
typhimurium LT2]
ref|ZP_02351139.1| galactitol utilization operon transcriptional repressor [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
ref|ZP_02571274.1| galactitol utilization operon transcriptional repressor [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gb|AAL22134.1| transcriptional regulator of sugar metabolism [Salmonella
typhimurium LT2]
Length = 257
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV--- 54
MN ER I+ L++ + + V LS +S+VTIR DL LE KGL+ R HG A
Sbjct: 1 MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG 60
Query: 55 --LNSGDDLNVRLSYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTK 108
L GD+ V L Y + K+RIA+ AA +V++ TI+++SGST L+AE L + K
Sbjct: 61 SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALAR-K 119
Query: 109 RNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTD 168
NI VITNS A + + +++ GG + + G + + + + +FVG D
Sbjct: 120 SNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGTIAERSLHGISADLMFVGAD 179
Query: 169 GFNKDLGFMGKDMMRS-EGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
G + G + S GV MA AA +V+ + D++KF++ L + ++ VITD
Sbjct: 180 GIDATNGITTFNEGYSISGV--MAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDD 237
Query: 228 ALDKQTQELLSASGLVLDFV 247
+ KQ + L+ +G+ L V
Sbjct: 238 TISKQDKAALAKTGVELMIV 257
>ref|ZP_02862503.1| hypothetical protein ANASTE_01722 [Anaerofustis stercorihominis DSM
17244]
gb|EDS72014.1| hypothetical protein ANASTE_01722 [Anaerofustis stercorihominis DSM
17244]
Length = 253
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I++ + +KK+ VN LSE+ +VSKVT+RKDL +LE KG +++ HG A+ + LN
Sbjct: 6 RQYAILEYIYEKKEATVNELSEKFNVSKVTVRKDLIELEEKGKIKKNHGGAIPSENIFLN 65
Query: 63 VRLSYNYNI-----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
Y N+ KR+I AA+L+QD ++I++GST +A L + I V+TN
Sbjct: 66 ETPYYKKNMTAINEKRKIGALAAKLIQDKQIVIIDNGSTTNEIASYL--NDKEIVVVTND 123
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IAN + Y S +++ GGY + GP+ +++ + F+ D N + G +
Sbjct: 124 VRIANKLATYPSMSVVICGGYIKTPGYAIFGPMAEDLFKHTLADICFLSVDSLNINEG-L 182
Query: 178 GKDMMRSEGV-RYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
+ + S V + M A +V++L DSSK K S + ++ +ITD+
Sbjct: 183 SYNFLDSVAVKKQMIKNANKVIVLCDSSKIGKKSFAKLCDVDKIDIIITDK 233
>ref|YP_001310612.1| transcriptional regulator, DeoR family [Clostridium beijerinckii
NCIMB 8052]
gb|ABR35656.1| transcriptional regulator, DeoR family [Clostridium beijerinckii
NCIMB 8052]
Length = 253
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 129/241 (53%), Gaps = 5/241 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
RLE+I+ ++++ ++ V LSEQ +VS+ IRKDL +LE G L+R +G A+LN
Sbjct: 6 RLEQILNILNKHGRVKVKELSEQFNVSEGMIRKDLQRLEKNGDLQRTYGGAILNRKISKL 65
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+ R++ N N K I++KA EL+ D D I +ES S LLA+++ + + I +ITN
Sbjct: 66 SSITTRMTVNLNSKELISKKAFELIDDGDIIFLESSSINFLLAKLIANSTKKITLITNMS 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I + +I +GG Y S +G + IS + N+ F+G+ G N +G
Sbjct: 126 IIPPLFNNNETVVLICIGGVYDNRSGGVLGSEAIKSISKYTFNKGFLGSSGVNLITNSVG 185
Query: 179 KDMMRSEGVR-YMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
M+ ++ + ++E +L ++ KF+ SL ++ + + ++TD + +E L
Sbjct: 186 TSMLEDGNLKELIVSTSKEAFLLVETEKFNTDSLYKFATIDEFDAIVTDSNITDDIKEQL 245
Query: 238 S 238
+
Sbjct: 246 N 246
>ref|NP_762944.1| Transcriptional regulator of sugar metabolism [Vibrio vulnificus
CMCP6]
ref|NP_937576.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
YJ016]
gb|AAO07934.1|AE016811_175 Transcriptional regulator of sugar metabolism [Vibrio vulnificus
CMCP6]
dbj|BAC97546.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
YJ016]
Length = 256
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 134/244 (54%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R + I++ + Q + VN + + VS+VTIR DL+ LE KG + R +G A++N+
Sbjct: 6 RRDAILKHIQQHQSGSVNDFAVKYQVSEVTIRNDLNILEKKGCVTRCYGGAMINAQFAFD 65
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L + N +IK + + AA LV+D DT++++SGST +A L + K+++KV+TN+
Sbjct: 66 KPLQDKKQINQDIKSLLGQYAASLVEDGDTLILDSGSTTEQIAFHLTE-KQHLKVMTNAI 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA ++ + ++I+ GG + NS G + ++ F N++F+G DGF+K G
Sbjct: 125 NIAYHLANRDNIEVIVTGGLMRKNSYSLHGESGEALLGQFRFNKLFLGVDGFDKLAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ R M +AA+ V+ +TDSSKF + S ++ +ITD + + L+
Sbjct: 185 PHSGEASINRRMVEAAQMVIAVTDSSKFDRQSFCLIARPEQLDMLITDSGIPEDYHRELT 244
Query: 239 ASGL 242
G+
Sbjct: 245 EMGV 248
>ref|YP_752705.1| transcriptional regulator, DeoR family protein [Shewanella
frigidimarina NCIMB 400]
gb|ABI73866.1| transcriptional regulator, DeoR family protein [Shewanella
frigidimarina NCIMB 400]
Length = 256
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 144/242 (59%), Gaps = 5/242 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R II+LV+++ ++ V+ L+ S+VTIRKDL LE+ GLL R +G AV ++
Sbjct: 9 RRHSIIKLVNEQGEVSVDELANLFATSEVTIRKDLAMLETHGLLLRRYGGAV-PVPQEMT 67
Query: 63 VRLSYNYNI-KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+S N ++ K+ IA KAAEL++D++ I+I+SGST + + + L KR + V+TNS +A
Sbjct: 68 QIVSENLSLNKQAIAAKAAELIRDHNRIIIDSGSTTSGIVQQLND-KRGLVVMTNSLQLA 126
Query: 122 NYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
N I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + D G +
Sbjct: 127 NAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLDRGTTTFN 186
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+ + MA+ + EVV+L +S+K + +L VN ++TD + ++ ++A
Sbjct: 187 ELTGLS-KVMAEMSREVVVLLESTKIGRRIPNLELPWDVVNVLVTDDNITQEAVNTIAAH 245
Query: 241 GL 242
G+
Sbjct: 246 GV 247
>ref|YP_080651.1| probable transcriptional regulator YulB [Bacillus licheniformis
ATCC 14580]
ref|YP_093076.1| YulB [Bacillus licheniformis ATCC 14580]
gb|AAU25013.1| probable transcriptional regulator YulB [Bacillus licheniformis
ATCC 14580]
gb|AAU42383.1| YulB [Bacillus licheniformis DSM 13]
Length = 253
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R ++I++LV+ + + V LSE V++ TIR+DL+KLE + L+R HG AV ++
Sbjct: 6 RHQKIVELVNLRSSVRVTELSELFSVTEETIRRDLEKLEKENKLKRSHGGAVSVQTEERE 65
Query: 63 V----RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
V R N N K+ IA +A + V+ + I++++ +T +A+ L + VITNS
Sbjct: 66 VHFREREITNVNEKKMIAFEAVKHVKSGERIILDASTTAWYMAKALENIP--LTVITNSV 123
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+A + + +I GG P S VGPL + + ++HVN+ F+ G + G
Sbjct: 124 RVAIELSKKEKVTVISTGGMLLPQSMSYVGPLAERSLDMYHVNKTFLSCKGVDPASGLSD 183
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
+ M++ + M + A+E +++ DSSKF + L D RVITD +DK
Sbjct: 184 SNEMQALLKKRMIEIADETILMADSSKFGTRAFSQIDRLHDRYRVITDSGIDK 236
>ref|YP_001885705.1| transcriptional regulator, DeoR family [Clostridium botulinum B
str. Eklund 17B]
gb|ACD24519.1| transcriptional regulator, DeoR family [Clostridium botulinum B
str. Eklund 17B]
Length = 254
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 5/235 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS--GDD 60
RL+ II +V+++ K+ V +LSE+ DVS IRKDL KLES G L R +G A+ N+
Sbjct: 6 RLQEIIDIVNKEGKVFVKNLSEKFDVSNGMIRKDLQKLESLGKLTRTYGGAIANNEIKKT 65
Query: 61 LNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
LN+ R+ N K IA+KA +++D+DT+ + S LLAE++ + + I +ITN
Sbjct: 66 LNIDTRMHKNIENKHIIAKKAFNIIKDSDTLFFDISSINFLLAELIANSDKKITLITNMS 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLG-FM 177
I + S+C++IL+GG Y TVG + + ++ F+G+ G N + G
Sbjct: 126 SIPELFKNNSNCKLILVGGIYNKELGGTVGSETISTLKKYRFDKAFIGSSGINLENGDIY 185
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
D+ + + +++ IL ++ KF + +L D+N ++TD+ +K
Sbjct: 186 NFDLEEGNTKQVIINSSNNSYILMENEKFYSHGIYTFSNLNDINGIVTDKIPNKN 240
>ref|YP_858672.1| glucitol operon repressor [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gb|ABK39040.1| glucitol operon repressor [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 257
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV-LNSGDDL 61
R I+ LV ++ ++ V++L++ S+VTIRKDL LE+ GLL R +G AV L S +
Sbjct: 9 RRHTIVTLVQEQGEVSVDALAKHFSTSEVTIRKDLAVLETGGLLLRRYGGAVPLPSEMVV 68
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
N K IA AAE ++D++ ++I+SGST + + +L KR + V+TNS +A
Sbjct: 69 EANPEQVSNRKLAIARAAAERLRDHNRVIIDSGSTTSAMIPMLGN-KRGLIVMTNSLNVA 127
Query: 122 NYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
+R+ + +L+ GG + P+SE G + ++++ + +++F+G DG + + G +
Sbjct: 128 GALRELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYDFDQLFIGADGIDPERGTTTFN 187
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS 240
+ R MA+ + EV+++ +S K + +L + ++ ++TD+ L + +E + A
Sbjct: 188 ELVGLS-RVMAEVSREVIVMVESEKIGRKIPNLELPWSSIHTLVTDEGLASEAREQIQAQ 246
Query: 241 GLVL 244
G+ L
Sbjct: 247 GVTL 250
>ref|ZP_02697431.1| transcriptional regulator of sugar metabolism [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
Length = 257
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV--- 54
MN ER I+ L++ + + V LS +S+VTIR DL LE KGL+ R HG A
Sbjct: 1 MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG 60
Query: 55 --LNSGDDLNVRLSYNYNI----KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTK 108
L GD+ V L Y + K+RIA+ AA +V++ TI+++SGST L+AE L + K
Sbjct: 61 SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALAR-K 119
Query: 109 RNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTD 168
NI VITNS A + + +++ GG + + G + + + + +FVG D
Sbjct: 120 SNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTYSMHGTIAERSLHGISADVMFVGAD 179
Query: 169 GFNKDLGFMGKDMMRS-EGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
G + G + S GV MA AA +V+ + D++KF++ L + ++ VITD
Sbjct: 180 GIDATNGITTFNEGYSISGV--MAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDD 237
Query: 228 ALDKQTQELLSASGLVLDFV 247
+ KQ + L+ +G+ L V
Sbjct: 238 TISKQDKAALAKTGVELMIV 257
>ref|YP_927070.1| transcriptional regulator, GlpR family [Shewanella amazonensis
SB2B]
gb|ABL99400.1| transcriptional regulator, GlpR family [Shewanella amazonensis
SB2B]
Length = 260
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 9/253 (3%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R + I++L Q+ K+ V+ LS + VS+VTIR DL L+ K LL R G A++N+ +
Sbjct: 7 IERQQEIVRLTQQQGKVSVSDLSARFGVSEVTIRSDLATLDQKQLLVRSRGGAIVNT--E 64
Query: 61 LNVRLSYNYN------IKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVI 114
L+ LS +KR + AA LVQ+ D ++++SG+T +A L Q ++ V+
Sbjct: 65 LSRELSLKEKGSCYSALKRELGAAAASLVQNGDRLLLDSGTTTEQVAHHLMQ-HEDLIVM 123
Query: 115 TNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDL 174
TN IA+ + + S +++L GG + S G ++ + ++ N++ +G DGF+
Sbjct: 124 TNGLNIASVLSKSDSVEVMLTGGLLRKKSMSFYGSAAEKSLGDYNFNKLILGVDGFDLKA 183
Query: 175 GFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQ 234
G + R M D A EV+++TDSSKF + + L ++R++TD + ++
Sbjct: 184 GLTTHFEKEACLNRMMVDIATEVIVVTDSSKFDQQAFHVICPLLRIHRLVTDTGIPERYA 243
Query: 235 ELLSASGLVLDFV 247
+ L G+ L V
Sbjct: 244 QALEKQGVQLHLV 256
>ref|YP_592982.1| transcriptional regulator, DeoR family [Acidobacteria bacterium
Ellin345]
gb|ABF42908.1| transcriptional regulator, DeoR family [Acidobacteria bacterium
Ellin345]
Length = 267
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + I+ +V ++ + V L+++ S +TIRKDL+ L+++GL++R HG A+ ++L
Sbjct: 20 RRQEILTIVQREGRALVVDLAQRFSTSAITIRKDLEFLQARGLIQRTHGGALPVRSNNLT 79
Query: 63 V-----RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
+ + K RIA A +V++ ++++SGST ++ L + R + VITN+
Sbjct: 80 DPSLQDKEKLHQREKLRIASAAVRMVKEGQCVILDSGSTTTAISRAL-RDFRELTVITNA 138
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IA + +S +IL GG + NS VGP ++ + + + +F+G DGF+ +G
Sbjct: 139 VNIAAEL-AGTSIDVILTGGTLRKNSFSLVGPQAEDTLREINADVLFLGVDGFDAKVGLT 197
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+++ + R MA AA VV + DSSKF K SL + ++ VITD+ + + T + L
Sbjct: 198 TPNVLEARVNRAMAHAARRVVAVCDSSKFGKRSLAVIVPPDAIHEVITDKHVSRDTVQEL 257
Query: 238 SASGLVLDFV 247
+G+ + V
Sbjct: 258 REAGIEVTLV 267
>ref|YP_001318709.1| transcriptional regulator, DeoR family [Alkaliphilus
metalliredigens QYMF]
gb|ABR47050.1| transcriptional regulator, DeoR family [Alkaliphilus
metalliredigens QYMF]
Length = 252
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 135/228 (59%), Gaps = 6/228 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL--NSGDD 60
R + I++ ++Q + V L++ V++ TIR+DL +LE K +L+R HG AV ++ +
Sbjct: 6 RKKNIVEAINQDGSVKVGKLADVYGVTEATIRRDLQELEEKKMLQRTHGGAVAMDSTKYE 65
Query: 61 LNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L V R Y K +I KAAE+V+D D+I+I++G+T +A L ++NI V+TNS
Sbjct: 66 LTVLERKDSYYQQKLQIGMKAAEMVEDGDSIIIDAGTTTLQMARHL--NRKNITVVTNSM 123
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + ++I++GG + ++ VGPL +EM+ V++VF+GT+G D G
Sbjct: 124 TIAAELEGKPEIELIMIGGMVRWSTHAFVGPLAEEMLEKIRVDKVFLGTNGITLDDGLTT 183
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
+M+ ++ + M + E ++L DSSKFS+ S + +++ +I+D
Sbjct: 184 PNMLEAKIKQIMLAVSTEKILLCDSSKFSRRSFSKICKVQEIDMIISD 231
>ref|ZP_01706555.1| transcriptional regulator, DeoR family [Shewanella putrefaciens
200]
gb|EAY53059.1| transcriptional regulator, DeoR family [Shewanella putrefaciens
200]
Length = 256
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 143/244 (58%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II +++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIITILNEQGEVSVDELSLRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IA+ AA+L++D++ I+I+SG+T + L E L KR + V+TN+
Sbjct: 69 QFSAKIAPN---KLSIAKTAAQLIKDHNRIIIDSGTTTSGLIEQLND-KRGLVVMTNALH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ DS K K +L A V+ ++TD +D+ + +S
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMVDSDKIGKRIPNLELPWAKVSVLVTDSRIDESALKQIS 243
Query: 239 ASGL 242
A G+
Sbjct: 244 AQGV 247
>ref|YP_054860.1| transcriptional regulator, DeoR-family [Propionibacterium acnes
KPA171202]
gb|AAT81902.1| transcriptional regulator, DeoR-family [Propionibacterium acnes
KPA171202]
Length = 253
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 9/246 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV-----LNS 57
R + +I + ++ V S L V TIR+DLD+L ++ +LRR HG A+ L
Sbjct: 6 RHKWLIDTARETGRVSVAEASTALGVVPETIRRDLDQLCNQKMLRRVHGGAIPIEFDLLG 65
Query: 58 GDDLNVRLSYNYNIKRRIAEKA-AELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
L R S K +IA A + L D +I++++GST LA ++ T+R V TN
Sbjct: 66 DQPLATRDSSAVTQKEQIARAALSHLPSDKGSIILDAGSTTGRLASIMPSTRR-FTVFTN 124
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S IA+ + +S+C + LLGG +P ++ TVG + + I+ V+ F+GT+G + G
Sbjct: 125 SSPIASTVATHSNCDVHLLGGRLRPTTQATVGNV--DAIARLRVDVAFMGTNGISPTHGL 182
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
D M A VV+L DS K S + L DV+ +ITD + E+
Sbjct: 183 STPDADEVATKAAMVANAHHVVVLADSRKMGAESTMRFAELGDVDVIITDSGVTPHQVEM 242
Query: 237 LSASGL 242
L +G+
Sbjct: 243 LHKAGV 248
>ref|YP_428894.1| transcriptional regulator, DeoR family [Moorella thermoacetica ATCC
39073]
gb|ABC18351.1| transcriptional regulator, DeoR family [Moorella thermoacetica ATCC
39073]
Length = 258
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R ++II+++ Q + V LS VS+VTIR+DL +LE+ GLL+R HG AV +
Sbjct: 6 RKQKIIEILLQTPSVRVAELSNLFQVSEVTIRRDLQELEAAGLLKRTHGGAVSITTASFE 65
Query: 63 VRL----SYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVL-CQTKRNIKVITNS 117
L + K+ IA A +L+ + DTI++++GST LA +L K+ + V+TN+
Sbjct: 66 PALVEKEEEHLEEKKAIARAAVDLIAEGDTILLDAGSTTLQLARLLKANKKQRLTVVTNA 125
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+A + + +IL GG+ + + VGP+ + +V++VF+ T+ + + G
Sbjct: 126 LNVAWELAFVETIDLILTGGHLRNRTLSAVGPIADNTLQGLYVDKVFLATNSLDVERGLT 185
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
++ ++ + M A E+++L D SKF + SL + V+R+ITD
Sbjct: 186 TPNIYEAQTKQKMVKAGCEIIVLADHSKFGRISLGLICPVTAVDRIITD 234
>ref|YP_271582.1| transcriptional regulator, DeoR family [Colwellia psychrerythraea
34H]
gb|AAZ26961.1| transcriptional regulator, DeoR family [Colwellia psychrerythraea
34H]
Length = 254
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 137/252 (54%), Gaps = 21/252 (8%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R II ++ + ++ V+SL++Q D S+VTIRKDL LE+ GLL R +G AV +
Sbjct: 9 RRHNIIADLNAQGEVSVDSLAKQFDTSEVTIRKDLAALETSGLLLRRYGGAVALPSEITE 68
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
++ K IA+KAA L++D++ I+I+SG T + L L K+ + V+TN+ IAN
Sbjct: 69 AKVDQLSQQKLHIAKKAAMLIRDHNRIIIDSGQTTSALVSELA-NKKGLVVMTNALSIAN 127
Query: 123 YIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG---------FNK 172
I + +L+ GG + SE G + ++++ + +++F+G DG FN+
Sbjct: 128 EIHALENEPTLLMTGGTWDATSEAFQGQVAEQVLRSYDFDQLFIGADGIDIKRGTTTFNE 187
Query: 173 DLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
+G R MA+ A EV+++ +S+K +K +L+ ++ VITD L ++
Sbjct: 188 LIGLS----------RVMAEVAREVIVMVESAKITKKIPNLELNWQQIHTVITDDGLSEE 237
Query: 233 TQELLSASGLVL 244
+ L+ G+ L
Sbjct: 238 MRIALTEQGVKL 249
>ref|ZP_02620452.1| transcriptional regulator, DeoR family [Clostridium botulinum C
str. Eklund]
gb|EDS78022.1| transcriptional regulator, DeoR family [Clostridium botulinum C
str. Eklund]
Length = 252
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 133/233 (57%), Gaps = 6/233 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL- 61
R II+ +S+ I V L+ L VS +TIR+DLD+L+ +G+L R HG AVL S L
Sbjct: 6 RENYIIEKLSETGTIKVEDLASDLGVSLMTIRRDLDRLQDRGILYRSHGGAVLRSLYPLE 65
Query: 62 ---NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+++ N + K +IA A EL+ + DTI +++G+T LA++L +TK+++ VIT+
Sbjct: 66 QAYDIKKISNIDAKNKIASAALELINEGDTIFLDAGTTTLELAKLL-KTKKDLTVITDDL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + + S+ + ++GG Q N+ +GP ++ I VN F+GT D
Sbjct: 125 KIALELYK-SNVETYIVGGRVQKNTACIIGPTAEDFIKNIKVNLCFLGTSSITSDGHLST 183
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
++ R + A+ V++ D SKF++ S V+ +S+ ++N +IT++ ++
Sbjct: 184 PTFEKAYLKREVVRASSYSVLMVDLSKFNRESFVNIISIQEINCIITNKYFNE 236
>ref|ZP_02296866.1| transcriptional regulator, DeoR family [Rhizobium leguminosarum bv.
trifolii WSM1325]
gb|EDR74751.1| transcriptional regulator, DeoR family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 258
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 11/256 (4%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS 57
M R ER I+ L+ + K +D++ L+++ VSK+TI +DLD LE G+LR+ G A +++
Sbjct: 1 MRREERHQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEKAGVLRKVRGGATIDA 60
Query: 58 G----DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKV 113
G D +R K +A+ A ELV+ T+M+ GS A+L E+L Q KR + +
Sbjct: 61 GTQFESDFRIRERQGNEAKLAMAQTALELVEPGMTVMVNDGSMAAVLGEMLLQ-KRPLTL 119
Query: 114 ITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
ITN+ I ++ + +I LGG Y +G + +E +S + F+ T +
Sbjct: 120 ITNNAAIMERLKGEAGIALIALGGIYSAKFNAYLGVVTEEALSRLRADIAFISTPAVSGG 179
Query: 174 LGF-MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
+ M +++R++ R M ++ +L + + T+L LAD + +ITD A D
Sbjct: 180 RAYHMDDNVVRAK--RAMIASSTRTCLLVNHQRIGHTALHVMADLADFDAIITDSAPDAA 237
Query: 233 TQELLSASGLVLDFVS 248
E +G+ L S
Sbjct: 238 VLEEFEQAGITLTIAS 253
>ref|YP_001111506.1| transcriptional regulator, DeoR family [Desulfotomaculum reducens
MI-1]
gb|ABO48681.1| transcriptional regulator, DeoR family [Desulfotomaculum reducens
MI-1]
Length = 253
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 136/247 (55%), Gaps = 13/247 (5%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL--NSGDD 60
R E+I L+ + + V L+++ DVS++TIR+DL L + GL++REHG A+ + DD
Sbjct: 5 RQEKIQSLLREHGNLTVAELAQRFDVSEMTIRRDLKALAALGLIQREHGRALFLQTAPDD 64
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
RL K I AA+L+ + +TI++++G+T +A+ + ++ VITNS
Sbjct: 65 RFFARLGEAEQEKIAIGRLAADLIAEGETIILDAGTTTLAVAQ---EINKSCVVITNSLP 121
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA+ + + +L+ GG + ++ VGP+ + + F+ ++VF+ G N + G
Sbjct: 122 IASTLANHGDEMTVLITGGEVRGTTQALVGPMARGGFTGFNADKVFLAATGINIERGLST 181
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNR---VITDQALDKQTQE 235
+M+ SE + M DAA +V+++ S KF + V+ + A NR VITD L + T+
Sbjct: 182 DNMLESEVKQAMLDAARQVILVAHSKKFGQ---VYYHTFAHWNRVHTVITDAGLPENTRR 238
Query: 236 LLSASGL 242
L G+
Sbjct: 239 ELENLGV 245
>ref|YP_001556920.1| transcriptional regulator, DeoR family [Shewanella baltica OS195]
gb|ABX51660.1| transcriptional regulator, DeoR family [Shewanella baltica OS195]
Length = 257
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 142/244 (58%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II +++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIITILNEQGEVSVDELSLRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IA+ AA+L++D++ I+I+SG+T + L E L KR + V+TN+
Sbjct: 69 QFSAKIAPN---KLSIAKTAAQLIKDHNRIIIDSGTTTSGLIEQLND-KRGLVVMTNALH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ DS K K +L A V+ ++TD +DK + +S
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMVDSDKIGKRIPNLELPWAKVSVLVTDDRIDKSALKQIS 243
Query: 239 ASGL 242
G+
Sbjct: 244 DQGV 247
>ref|NP_827534.1| DeoR-family transcriptional regulator [Streptomyces avermitilis
MA-4680]
dbj|BAC74069.1| putative DeoR-family transcriptional regulator [Streptomyces
avermitilis MA-4680]
Length = 262
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 5/233 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHG--YAVLNSG- 58
R I++ +DV +L+ +L V+K T+R+DL LE GLLRR HG Y V ++G
Sbjct: 14 ERQREIVRAARVTGSVDVTALAAELGVAKETVRRDLRALEDHGLLRRTHGGAYPVESAGF 73
Query: 59 -DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
L R + + KRRIA AAEL+ D +T+ ++ G T L+AE L + R + V+T S
Sbjct: 74 ETTLAFRATSHVPEKRRIAAAAAELLGDAETVFVDEGFTPQLIAEALPR-DRPLTVVTAS 132
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
A + + + ++LLGG +P + TV +M++ F ++ ++G +G +++ G
Sbjct: 133 LATAGALAEAENTSVLLLGGRVRPGTLATVDHWTTKMLAGFVIDLAYIGANGISREHGLT 192
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALD 230
D SE A+ V +KF S + D+ ++T L
Sbjct: 193 TPDPAVSEVKAQAIRASRRTVFAGVHTKFGAVSFCRFAEVGDLEAIVTSTLLP 245
>ref|ZP_01234293.1| transcriptional regulator of sugar metabolism [Vibrio angustum S14]
gb|EAS66748.1| transcriptional regulator of sugar metabolism [Vibrio angustum S14]
Length = 258
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 130/246 (52%), Gaps = 5/246 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R ++I+ + V+ ++Q DVS VTIR DL+ LE +G + R +G A LN
Sbjct: 6 RRQQIMAHIRNHGSGKVDEFTQQYDVSAVTIRHDLNLLEKEGCVFRCYGGATLNPNFAFE 65
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L+ + N + K+ IAE AA+LV D DTI+++SG+T L+ + L K+++ V+TN+
Sbjct: 66 QPLHRKDQLNRSAKQYIAEAAAKLVNDGDTIILDSGTTIGLMPKYL-NNKQHLVVMTNAI 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A + S + ++GG + S G +E + + +++F+G DGF+ G
Sbjct: 125 NTAYQLSNNDSVDLHVVGGNLRRTSCSLTGHQGEEQVRAYLFDKLFLGVDGFDLQAGITT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
D ++ R M D A +V+ + DSSKF + S + ++ ++TD + T + L+
Sbjct: 185 PDNHEAQMNRAMCDVARQVIAVADSSKFGRKSFCMIRAAHQIDILVTDSNIPHATHQALT 244
Query: 239 ASGLVL 244
G+ +
Sbjct: 245 DMGVTV 250
>ref|YP_001144006.1| transcriptional regulator, DeoR family [Aeromonas salmonicida
subsp. salmonicida A449]
gb|ABO92258.1| transcriptional regulator, DeoR family [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 258
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 140/249 (56%), Gaps = 14/249 (5%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I+ LV ++ ++ V++L++ S+VTIRKDL LE+ GLL R +G AV L
Sbjct: 10 RRHTIVNLVQEQGEVSVDTLAKHFSTSEVTIRKDLAVLETGGLLLRRYGGAV-----PLP 64
Query: 63 VRLSYNYNI----KRR--IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ + N KR+ IA AAE ++D++ ++I+SGST + + +L KR + V+TN
Sbjct: 65 SEMVVDSNPEQVSKRKLSIARAAAERIRDHNRVIIDSGSTTSAMIPMLGN-KRGLIVMTN 123
Query: 117 SCFIANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLG 175
S +A +R+ + +L+ GG + P+SE G + ++++ + +++F+G DG + + G
Sbjct: 124 SLNVAGALRELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYDFDQLFIGADGIDPERG 183
Query: 176 FMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + R MA+ + EV+++ +S K + +L + ++ ++TD+ L +E
Sbjct: 184 TTTFNELVGLS-RVMAEVSREVIVMVESEKIGRKIPNLELPWSSIHTLVTDEGLATSARE 242
Query: 236 LLSASGLVL 244
+ A G+ L
Sbjct: 243 QIQARGITL 251
>ref|YP_001095962.1| transcriptional regulator, DeoR family [Shewanella loihica PV-4]
gb|ABO25703.1| transcriptional regulator, DeoR family [Shewanella loihica PV-4]
Length = 256
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 140/245 (57%), Gaps = 11/245 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II ++++ ++ V+ L+ + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIIAVLNETGEVSVDELANRFETSEVTIRKDLAVLEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IAE AA L++D++ I+I+SGST + L + L TKR + V+TNS
Sbjct: 69 QFSAKIAPN---KLSIAEAAARLIKDHNRIIIDSGSTTSGLVQQL-NTKRGLVVMTNSLQ 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG DL
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGI--DLARGT 182
Query: 179 KDMMRSEGV-RYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
G+ + MA+ + EV+++ DS K + +L ++ ++TD +D+QT E +
Sbjct: 183 TTFNELTGLSKVMAEVSREVIVMVDSDKIGRRIPNLELPWQQISVLVTDDRVDEQTVEQI 242
Query: 238 SASGL 242
G+
Sbjct: 243 IEQGV 247
>ref|YP_404425.1| DNA-bindng transcriptional repressor [Shigella dysenteriae Sd197]
gb|ABB62934.1| regulator for glucitol operon [Shigella dysenteriae Sd197]
Length = 257
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQMVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALE 243
Query: 239 ASGL 242
GL
Sbjct: 244 EKGL 247
>ref|YP_001178280.1| DNA-binding transcriptional dual regulator [Enterobacter sp. 638]
gb|ABP62229.1| transcriptional regulator, DeoR family [Enterobacter sp. 638]
Length = 269
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 136/246 (55%), Gaps = 7/246 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E+IIQ + Q+ + VN LS+ VS VTIR DL LE +G+ R +G A++ G+
Sbjct: 18 RREQIIQRLRQQGSVQVNDLSQLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDGNTPG 77
Query: 63 V------RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
V + S N +KR IA+ AA L++ ++++SG+T +A ++ Q ++ +TN
Sbjct: 78 VEPSVEDKSSLNTAMKRSIAQAAANLIKPGHRVILDSGTTTYEIARMMRQ-HSDVIAMTN 136
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+AN + + ++++ GG+ + S+ G ++ + +H + +F+G D + D G
Sbjct: 137 GMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDLLFLGVDAIDLDRGV 196
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
+ + R M + AE ++++TDS+KF+++SL + ++ +I D+ + ++ E
Sbjct: 197 STHNEDEARLNRKMCEVAERIIVVTDSTKFNRSSLHKIIDTQRIDMIIVDEGIPTESLEG 256
Query: 237 LSASGL 242
L +G+
Sbjct: 257 LRKNGI 262
>ref|ZP_01576264.1| transcriptional regulator, DeoR family [Clostridium cellulolyticum
H10]
gb|EAV69613.1| transcriptional regulator, DeoR family [Clostridium cellulolyticum
H10]
Length = 260
Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 14/238 (5%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL- 61
R+ I +++ K+++VN LS+ L VS+VTIR+DL+KLES+G L R HG AVL S +D
Sbjct: 6 RIRIIKAYLTENKQVEVNQLSQMLGVSEVTIRRDLEKLESEGFLTRTHGGAVLGSINDSS 65
Query: 62 ------NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVIT 115
N + Y+ IA A +++ D D IM+ +G +A+ L +K + V+T
Sbjct: 66 SSNSDPNALMEYS-----EIANIAIQMINDGDIIMLTNGEINLEIAKHL-NSKNRVTVLT 119
Query: 116 NSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLG 175
N IA++I + S ++ILLGG N++ G L ++ F+VN +F+ DG + L
Sbjct: 120 NDLKIASHIMEDQSAKVILLGGDIDYNTKSVFGSLTISNLNNFYVNHLFIEIDGISNTLD 179
Query: 176 FMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADV-NRVITDQALDKQ 232
++ + ++ A A E +I+ SS F KTS L D+ ++VIT+ L Q
Sbjct: 180 ISVSNIDMATFIKEAAKNANERIIVCKSSAFEKTSFYRAGRLKDLCDKVITNNTLSDQ 237
>ref|ZP_01739058.1| probable transcriptional regulator [Marinobacter sp. ELB17]
gb|EAZ98120.1| probable transcriptional regulator [Marinobacter sp. ELB17]
Length = 251
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Query: 5 ERIIQ-LVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV---LNSGDD 60
++IIQ L+ + + V+ L+E VS TIR+DL L++ G++++ HG A L+S
Sbjct: 7 QQIIQELIIARGEASVDKLAEHFGVSAETIRRDLGVLDTLGVIKKIHGGAARVRLHSEKS 66
Query: 61 LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
+ R+S KR IAEK A+L++ N+T+ +++GS+ + AEVL + + VITNS I
Sbjct: 67 FHERMSERTTEKRVIAEKVAKLIEPNETVFLDTGSSTLICAEVLGAIE-GLTVITNSVMI 125
Query: 121 ANYIRQYS-SCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
A S + LLGG + ++ TVGPL+ E I F + + F+ ++G M
Sbjct: 126 AQTSGASSRGAKTFLLGGCFGADNSETVGPLVIEQIQRFQADTAVITVAAFDAEMGAMDS 185
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVN 221
D ++ R M A ++L DSSK + + + D++
Sbjct: 186 DFDEAQVARAMISRARRTIVLADSSKLGRIAAFNVAKTEDID 227
>ref|YP_001455563.1| hypothetical protein CKO_04061 [Citrobacter koseri ATCC BAA-895]
gb|ABV15127.1| hypothetical protein CKO_04061 [Citrobacter koseri ATCC BAA-895]
Length = 257
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 133/244 (54%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE+ G + R +G VLN S
Sbjct: 6 RQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IA+ A + + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKALIAQAAVQFIHDGDSIILDAGSTVLQMVPMLTRFS-NITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V++++TD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLVTDAGIDPAFRQALE 243
Query: 239 ASGL 242
A G+
Sbjct: 244 AKGI 247
>ref|ZP_01550193.1| transcriptional regulator, DeoR family protein [Stappia aggregata
IAM 12614]
gb|EAV41226.1| transcriptional regulator, DeoR family protein [Stappia aggregata
IAM 12614]
Length = 250
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 5/229 (2%)
Query: 7 IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL---NSGDDLNV 63
I+ ++ K+++ N L++ L+VS+ T+R+DL LE G + R HG AVL S +
Sbjct: 10 ILSMLGAKQQVSANDLAQMLNVSRETVRRDLLDLEEAGQVNRVHGGAVLPDPRSEEPFRQ 69
Query: 64 RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANY 123
R++ K IA KAA L+Q TI +++G+T AL A L + + VITNS IA
Sbjct: 70 RMTTQIRAKSEIARKAAGLIQPGQTIFVDAGTTTALFARELAKLS-GLSVITNSLDIATT 128
Query: 124 IRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMR 183
+ Q + +++LLGG + TVG L I F V+ F + G D+
Sbjct: 129 L-QGAGKEVLLLGGRMAADVPATVGELTLSEIRRFRVDLCFSAPVAVHPARGAFFYDLQE 187
Query: 184 SEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
+E MA A + VIL D SK KTS V ++ R++T+ A+D++
Sbjct: 188 AEIAIAMAAQALQTVILADQSKLGKTSRVQSWEAGEIGRLVTNTAVDEE 236
>ref|NP_243034.1| transcriptional regulator (DeoR family) [Bacillus halodurans C-125]
dbj|BAB05887.1| transcriptional regulator (DeoR family) [Bacillus halodurans C-125]
Length = 259
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 10/247 (4%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R E+I++ + + K + V+ LS +L VS+ TIR DL LE KGLL+R HG AV DD
Sbjct: 4 VERHEKILEWLEKNKAVKVSDLSRELQVSEKTIRIDLVHLEKKGLLKRIHGGAV--PLDD 61
Query: 61 ------LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVI 114
+N R S + K+ IA +A + +Q N+TI+++ GST +A+ L + +I
Sbjct: 62 EGRIFPINERQSKHNLAKQAIAGEAIKRIQPNETILMDGGSTTLAVAKQLGAFP--VTII 119
Query: 115 TNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDL 174
TN IA + Q+++LGG S P E++ VNR+F G G + +
Sbjct: 120 TNDVRIAAELISKEKVQLMVLGGTRIGTSSSLFSPESSELLKRIRVNRLFFGATGISIEH 179
Query: 175 GFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQ 234
G + + E + + AE V +L DS+KF K L+ ++ +V+ +ITD LD +
Sbjct: 180 GLTVLNSLHVEWKKQVLRCAERVTLLVDSTKFEKVGLIQFATIEEVDEIITDMNLDSAIK 239
Query: 235 ELLSASG 241
+ L G
Sbjct: 240 KRLETLG 246
>ref|YP_311690.1| DNA-bindng transcriptional repressor [Shigella sonnei Ss046]
ref|ZP_00719874.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli E110019]
ref|YP_409165.1| DNA-bindng transcriptional repressor [Shigella boydii Sb227]
ref|YP_001464015.1| glucitol operon repressor [Escherichia coli E24377A]
ref|YP_001881544.1| glucitol operon repressor [Shigella boydii CDC 3083-94]
gb|AAZ89455.1| regulator for gut (srl), glucitol operon [Shigella sonnei Ss046]
gb|ABB67337.1| regulator for glucitol operon [Shigella boydii Sb227]
gb|ABV21178.1| glucitol operon repressor [Escherichia coli E24377A]
gb|ACD07445.1| glucitol operon repressor [Shigella boydii CDC 3083-94]
Length = 257
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQMVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFSFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALE 243
Query: 239 ASGL 242
G+
Sbjct: 244 EKGI 247
>ref|ZP_01220261.1| hypothetical transcriptional regulator GlpR [Photobacterium
profundum 3TCK]
gb|EAS43140.1| hypothetical transcriptional regulator GlpR [Photobacterium
profundum 3TCK]
Length = 233
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 5/228 (2%)
Query: 19 VNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----GDDLNVRLSYNYNIKRR 74
+N +++ VS VTIR DL+ LE KG + R +G A+LN LN + N NIK R
Sbjct: 1 MNKFAQKYKVSTVTIRNDLNYLEKKGCVTRCYGGALLNDLFTFDQALNDKKKINSNIKAR 60
Query: 75 IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIIL 134
+ AA L+ DT++++SGST +A L Q KR + ++TN IA + +++
Sbjct: 61 LGAYAASLINHGDTVILDSGSTTEQIAYHL-QDKRQLTIMTNGINIAYQLASQPDIDVMV 119
Query: 135 LGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAA 194
GG + S G +E+++ F N++F+G DGF+ + G ++ R M +AA
Sbjct: 120 TGGTIRKKSYSLHGSNGEELLTGFRFNKLFIGVDGFDINTGITTPHQGEADINRKMVEAA 179
Query: 195 EEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASGL 242
+ ++ LTDSSKF + S +N +ITD + L G+
Sbjct: 180 QTIIALTDSSKFGRQSFCLIARPEQLNILITDSGIPPHYHTELIQMGV 227
>ref|ZP_02437926.1| hypothetical protein CLOSS21_00364 [Clostridium sp. SS2/1]
gb|EDS22950.1| hypothetical protein CLOSS21_00364 [Clostridium sp. SS2/1]
Length = 252
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 6/238 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R E+I++++ K++ L ++ VS TIR DL +LE KGLL R HG A+L
Sbjct: 6 RQEKILEMLKVNKRVSNTELIKKFGVSGTTIRIDLTELEQKGLLSRTHGGAILKEDPVYG 65
Query: 59 -DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
D ++ R N K IA+KA ++D DTI+++SG+T LAE+L + N+ VITN
Sbjct: 66 EDSISSRREKNKEEKECIAKKARAQIEDGDTILLDSGTTALDLAELL-KDIHNLTVITND 124
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
IA +++YS +ILLGG + + E TVG + + V++VF+ T+ + G
Sbjct: 125 LQIALKLQKYSEIHLILLGGRVRTSFECTVGGMGIRALEELSVDKVFMTTNALSLQKGAT 184
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
++ +E R M + +L DSSK ++ + + + +ITD + K+ ++
Sbjct: 185 TPNLDNAEIKREMMKIGNQRYLLCDSSKIGTKTVCSFAKIEEFDVIITDDKISKELKD 242
>ref|YP_001343752.1| transcriptional regulator, DeoR family [Actinobacillus succinogenes
130Z]
gb|ABR73817.1| transcriptional regulator, DeoR family [Actinobacillus succinogenes
130Z]
Length = 255
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 10/247 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + I+ + + V+ L++ + TIRKDL LE+ + R +G VL + D
Sbjct: 6 RQQAILDYLQIHGRTPVDQLADHFKTTGTTIRKDLTVLEADNKVLRTYGSVVLAAASDEI 65
Query: 61 ---LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
L + + N IK +I AA+L+++ D+I+++ GST + L + + N+ ++TNS
Sbjct: 66 DLPLTNKTTINLEIKSKIGRAAADLIKNGDSIIMDQGSTVLQMVPNLSRFE-NLTIMTNS 124
Query: 118 CFIANYIRQYS-SCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
I N + ++++ GG Y+P S G L + + F +++F+GTDGF+ ++G
Sbjct: 125 LHIINALTALELDFELLMCGGTYRPKSGSFHGILAESTVEKFTFDKLFIGTDGFDLNVGL 184
Query: 177 MGKDMMRSEGV-RYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ + GV + M AA E+++L DSSKF++ S L +N V+TD LDK
Sbjct: 185 TTFNEV--HGVSKAMCHAAREIIVLADSSKFNRRSPNIVCPLEKINVVVTDDGLDKSIHA 242
Query: 236 LLSASGL 242
L G+
Sbjct: 243 ALIEKGI 249
>ref|YP_965405.1| transcriptional regulator, DeoR family [Shewanella sp. W3-18-1]
ref|YP_001185456.1| transcriptional regulator, DeoR family [Shewanella putrefaciens
CN-32]
gb|ABM26851.1| transcriptional regulator, DeoR family [Shewanella sp. W3-18-1]
gb|ABP77657.1| transcriptional regulator, DeoR family [Shewanella putrefaciens
CN-32]
Length = 256
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 142/244 (58%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II +++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIITILNEQGEVSVDELSLRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IA+ AA+L++D++ I+I+SG+T + L E L KR + V+TN+
Sbjct: 69 QFSAKIAPN---KLSIAKTAAQLIKDHNRIIIDSGTTTSGLIEQLND-KRGLVVMTNALH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ DS K K +L A V+ ++TD +D+ + +S
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMVDSDKIGKRIPNLELPWAKVSVLVTDSRIDESALKQIS 243
Query: 239 ASGL 242
G+
Sbjct: 244 DQGV 247
>ref|NP_417187.1| DNA-bindng transcriptional repressor [Escherichia coli str. K-12
substr. MG1655]
ref|ZP_00711030.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli B171]
ref|ZP_00716312.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli B7A]
ref|ZP_00728483.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli E22]
ref|ZP_00734935.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli 53638]
ref|ZP_00921385.1| COG1349: Transcriptional regulators of sugar metabolism [Shigella
dysenteriae 1012]
ref|ZP_00924277.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli 101-1]
ref|AP_003274.1| DNA-bindng transcriptional repressor [Escherichia coli W3110]
ref|YP_690188.1| DNA-bindng transcriptional repressor [Shigella flexneri 5 str.
8401]
ref|YP_001459471.1| glucitol operon repressor [Escherichia coli HS]
ref|YP_001724001.1| transcriptional regulator, DeoR family [Escherichia coli ATCC 8739]
ref|YP_001731603.1| DNA-bindng transcriptional repressor [Escherichia coli str. K-12
substr. DH10B]
sp|P15082.1|SRLR_ECOLI Glucitol operon repressor
emb|CAA31820.1| unnamed protein product [Escherichia coli]
gb|AAC13415.1| gut operon repressor (gutR) [Escherichia coli]
gb|AAA69216.1| CG Site No. 152; alternate gene name srlR
gb|AAC75749.1| DNA-bindng transcriptional repressor [Escherichia coli str. K-12
substr. MG1655]
dbj|BAA16568.2| DNA-bindng transcriptional repressor [Escherichia coli W3110]
gb|ABF04883.1| regulator for gut (srl), glucitol operon [Shigella flexneri 5 str.
8401]
gb|ABV07088.1| glucitol operon repressor [Escherichia coli HS]
gb|ACA76674.1| transcriptional regulator, DeoR family [Escherichia coli ATCC 8739]
gb|ACB03825.1| DNA-bindng transcriptional repressor [Escherichia coli str. K-12
substr. DH10B]
Length = 257
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQMVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALE 243
Query: 239 ASGL 242
G+
Sbjct: 244 EKGI 247
>ref|ZP_02963506.1| probable DeoR-type transcriptional regulator [Bifidobacterium
animalis subsp. lactis HN019]
gb|EDT89274.1| probable DeoR-type transcriptional regulator [Bifidobacterium
animalis subsp. lactis HN019]
Length = 267
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%)
Query: 14 KKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNSGDDLNVRLSYNY 69
+ + + +LS++ VS +TIR+D+ +L KGLLRR HG AV L S +V+ +
Sbjct: 17 RGAVRITALSKEFGVSAMTIRRDIAELADKGLLRRVHGGAVSTSTLLSEPLFSVKSQMDI 76
Query: 70 NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKR--NIKVITNSCFIANYIRQY 127
+K IA +A + V D I I G+T + A+ L ++ I ++TNS +A ++
Sbjct: 77 GLKDAIAGEAIKFVSPGDVIAIGGGTTAYVFAQHLLESPNANGITILTNSIPVAELVQAL 136
Query: 128 SS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSE 185
S ++I+ GG S VGP+ ++I+ VN VF+GT + GF+ + + +
Sbjct: 137 ESKDVEVIVTGGVIT-RSNSLVGPIADKVIASLRVNTVFLGTHSVSMPRGFLMPNSLEAA 195
Query: 186 GVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
M D A+ +ILTD +K+S TSL V+ VITD LD +
Sbjct: 196 TDMAMMDIADRTIILTDHTKWSSTSLSLFAKFDQVDTVITDDGLDPDS 243
>ref|YP_929512.1| transcriptional regulator, DeoR family [Shewanella amazonensis
SB2B]
gb|ABM01843.1| transcriptional regulator, DeoR family [Shewanella amazonensis
SB2B]
Length = 254
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R II+L++ + +++V+ L+ + S+VTIRKDL +LE GLL R +G AV +LN
Sbjct: 9 RRRSIIELLNAQGEVNVDQLASEFATSEVTIRKDLAELEKAGLLFRRYGGAV-PLPQELN 67
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
+ +K IA++AA+L++D++ I+I+ GST L L +R + V+TNS +AN
Sbjct: 68 AQAVAISPVKLAIAKEAAKLIRDHNRIIIDYGSTTLGLIPELAH-RRGLVVMTNSLQLAN 126
Query: 123 YIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG---------FNK 172
I + +L+ GG + P+SE G + ++++ + +++F+G DG FN+
Sbjct: 127 AIHELEQEPTLLMTGGTWDPHSESFQGLVAEQVLRSYDFDQLFIGADGIDLSRGTTTFNE 186
Query: 173 DLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
+G R MA+ + EV+++ +S K + +L + V+ V+TD L K+
Sbjct: 187 LVGLS----------RVMAEVSREVIVMLESDKIGRRIPNLELPWSQVSAVVTDNRLPKE 236
Query: 233 TQELLSASGL 242
++ A G+
Sbjct: 237 AVTIIEAHGV 246
>ref|YP_001368538.1| transcriptional regulator, DeoR family [Shewanella baltica OS185]
gb|ABS10475.1| transcriptional regulator, DeoR family [Shewanella baltica OS185]
Length = 256
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 142/244 (58%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II +++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIITILNEQGEVSVDELSLRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IA+ AA+L++D++ I+I+SG+T + L E L KR + V+TN+
Sbjct: 69 QFSAKIAPN---KLSIAKTAAQLIKDHNRIIIDSGTTTSGLIEQLND-KRGLVVMTNALH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ DS K K +L A V+ ++TD +D+ + +S
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMVDSDKIGKRIPNLELPWAKVSVLVTDDRIDESALKQIS 243
Query: 239 ASGL 242
G+
Sbjct: 244 DQGV 247
>ref|ZP_02040268.1| hypothetical protein RUMGNA_01032 [Ruminococcus gnavus ATCC 29149]
gb|EDN78622.1| hypothetical protein RUMGNA_01032 [Ruminococcus gnavus ATCC 29149]
Length = 254
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 9/233 (3%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R I++ + +++ V+ LS+ +VS+ TIR+DLDKL + G + +G AV+N ++
Sbjct: 4 IERRNEILEKLQTDRRVVVSELSQIYEVSEETIRRDLDKLVNDGYAIKSYGGAVIN--EN 61
Query: 61 LNVRLSYNY----NI--KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVI 114
+N+ L +N N+ K+RIAE A++VQD D+IM+++ ST +A+ L + K+N+ +I
Sbjct: 62 MNIDLPFNIRKNRNVIGKQRIAELVAKIVQDGDSIMLDASSTAVYIAKGL-KDKKNLTLI 120
Query: 115 TNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDL 174
TNS I + S +++ GG + S VG M+ +H ++ + G +
Sbjct: 121 TNSMEIVIELLDMSDWRVLSTGGVSREGSFALVGTQTNRMLQSYHADKAIISCKGLDMAA 180
Query: 175 GFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
G D + ++ R M + A+E ++ DSSKF T+ + L D+ ++TD+
Sbjct: 181 GLTDSDELLADNKRTMLENAKERILAIDSSKFGATAFMTVGRLKDITMIVTDE 233
>ref|YP_001738678.1| transcriptional regulator, DeoR family [Thermotoga sp. RQ2]
gb|ACB08995.1| transcriptional regulator, DeoR family [Thermotoga sp. RQ2]
Length = 256
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 135/239 (56%), Gaps = 10/239 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R RI Q++ K + V+ L++ +VS+ TIR+DL +LE+ G+L+R HG A+ +S
Sbjct: 6 RRNRIAQIIKSGKSVRVSELAKLFEVSESTIRRDLRELENLGILKRTHGGAIDSSLTSF- 64
Query: 63 VRLSYNYNIKRR------IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
LS++ ++ I + AA V+D DTI++++G+T +A+ + +N+ +ITN
Sbjct: 65 -ELSFDEKEEKFKKEKECIGKIAASFVRDGDTIILDAGTTTKYIAQNIVA--KNVTIITN 121
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S IAN + + ++I+ GG + ++ VG + + ++ F V++ F+G +G + G
Sbjct: 122 SVNIANDLSNNDNFEVIVTGGIIRTKTKALVGDIAQMVLRQFRVDKAFIGANGVSIKYGV 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
++ + R M + ++E ++ DSSKF + + S+ D++ +ITD + Q +E
Sbjct: 182 TTPSLIEAMIKRTMIEISKERFLVVDSSKFDQVTFSFICSVEDLDYIITDSISEDQKRE 240
>ref|YP_885763.1| DeoR-family protein transcriptional regulator [Mycobacterium
smegmatis str. MC2 155]
gb|ABK70297.1| DeoR-family protein transcriptional regulator [Mycobacterium
smegmatis str. MC2 155]
Length = 262
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 7/248 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL----NS 57
R +++L+ + +++ L+ VS +RKDL +LE++GLLRR HG AV +
Sbjct: 14 ERHAEVLRLLDAEHRVESAQLASLFGVSAECVRKDLAQLEARGLLRRVHGGAVPAISSRT 73
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
D+ R+ N K IA A V + T+++++GST LAE+L T + V TN+
Sbjct: 74 EPDVADRIE-NAEAKDAIARHALRYVSEGATLLLDAGSTTQRLAEMLS-TAAELVVYTNA 131
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+A + + +LLGG + + VG L E ++ +V+ F+GT+ + D G
Sbjct: 132 VPVATTLLRRG-ITAVLLGGRIREATMAAVGALTTEALAAINVDVAFLGTNALSLDRGLT 190
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
D + R+M AA + V L DSSKF + S L+DV+ +ITD D + L
Sbjct: 191 TPDPEEAAVKRHMLAAAGQRVFLVDSSKFGRHSQARHAELSDVDVLITDDGADPGLRGQL 250
Query: 238 SASGLVLD 245
A+G+ ++
Sbjct: 251 RAAGITVE 258
>ref|NP_708514.1| DNA-bindng transcriptional repressor [Shigella flexneri 2a str.
301]
ref|NP_838237.1| DNA-bindng transcriptional repressor [Shigella flexneri 2a str.
2457T]
gb|AAN44221.1| regulator for gut (srl), glucitol operon [Shigella flexneri 2a str.
301]
gb|AAP18047.1| regulator for gut (srl), glucitol operon [Shigella flexneri 2a str.
2457T]
Length = 257
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQIVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALE 243
Query: 239 ASGL 242
G+
Sbjct: 244 EKGI 247
>ref|YP_001676485.1| transcriptional regulator, DeoR family [Shewanella halifaxensis
HAW-EB4]
gb|ABZ78826.1| transcriptional regulator, DeoR family [Shewanella halifaxensis
HAW-EB4]
Length = 256
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 141/245 (57%), Gaps = 11/245 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II L++Q+ ++ V LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIISLLNQQGEVSVEELSLRFETSEVTIRKDLATLEKTGLLLRRYGGAVAVPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCA-LLAEVLCQTKRNIKVITNSC 118
+ +++ N K IA+ AA+L++D++ I+I+SGST + L+ E+ KR + V+TNS
Sbjct: 69 QFSAKIAPN---KLSIAKAAAQLIKDHNRIIIDSGSTTSGLIGEL--NNKRGLLVMTNSL 123
Query: 119 FIANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 124 ALANSIHELENEPTLLMTGGTWDPHSESFQGQIAEQVLRSYNFDQLFIGADGIDLERGTT 183
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ + + MA+ + EVV++ +S K + +L + ++ ++TD L + E +
Sbjct: 184 TFNELTGLS-KVMAEVSREVVVMLESEKLGRRIPNLELPWSKISVLVTDDKLPSEALETI 242
Query: 238 SASGL 242
S G+
Sbjct: 243 SNHGV 247
>ref|NP_755142.1| DNA-bindng transcriptional repressor [Escherichia coli CFT073]
ref|ZP_00725487.1| COG1349: Transcriptional regulators of sugar metabolism
[Escherichia coli F11]
ref|YP_542052.1| DNA-bindng transcriptional repressor [Escherichia coli UTI89]
ref|YP_670557.1| DNA-bindng transcriptional repressor [Escherichia coli 536]
ref|YP_853926.1| DNA-bindng transcriptional repressor [Escherichia coli APEC O1]
gb|AAN81712.1|AE016765_114 Glucitol operon repressor [Escherichia coli CFT073]
gb|ABE08521.1| glucitol operon repressor [Escherichia coli UTI89]
gb|ABG70656.1| galactitol utilization operon repressor [Escherichia coli 536]
gb|ABJ02137.1| DNA-bindng transcriptional repressor [Escherichia coli APEC O1]
Length = 257
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALE 243
Query: 239 ASGL 242
G+
Sbjct: 244 EKGI 247
>ref|ZP_00206682.1| COG1349: Transcriptional regulators of sugar metabolism
[Bifidobacterium longum DJO10A]
Length = 248
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 9/223 (4%)
Query: 19 VNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNSGDDLNVRLSYNYNIKRR 74
+ +LS++L VS +TIR+D+ +L KGLL+R HG AV L S +V+ + +K
Sbjct: 3 ITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTSTLLSEPLFSVKSQMDIGLKDA 62
Query: 75 IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRN--IKVITNSCFIANYIRQYSS--C 130
IA++A + V D I I G+T + A+ L +++++ I ++TNS +A ++ S
Sbjct: 63 IAQEAIKYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILTNSIPVAELVQALESKDV 122
Query: 131 QIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRYM 190
++I+ GG S VGP+ ++++ VN VF+GT + GF+ + + + M
Sbjct: 123 EVIVTGGVIT-RSNSLVGPIADKVVASLRVNTVFLGTHSVSIPRGFLMPNSLEAATDMAM 181
Query: 191 ADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
D A+ ++LTD +K+S TSL VN VITD LD +
Sbjct: 182 MDIADRTIVLTDHTKWSCTSLSLFARFDQVNTVITDDGLDPDS 224
>ref|ZP_02417949.1| hypothetical protein ANACAC_00516 [Anaerostipes caccae DSM 14662]
gb|EDR98982.1| hypothetical protein ANACAC_00516 [Anaerostipes caccae DSM 14662]
Length = 252
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 133/248 (53%), Gaps = 8/248 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I++L+ + K++ LSE+ VS T+R L +LE G L R HG A+LN D LN
Sbjct: 6 RKEEIMRLLKENKRVSSAELSERFHVSGTTVRTYLMELEKAGRLIRTHGGALLND-DILN 64
Query: 63 VRLSYNYNI------KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
V S K++ A KA +++D DTI+++SG+T LA++L K N+ V+TN
Sbjct: 65 VEESIAARKQKCLREKQKAAAKARSMIKDGDTILLDSGTTMLELAKLLKDAK-NLTVVTN 123
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+A +++ +IL+GG+ + E TVG + + + V + F+ +DG + G
Sbjct: 124 DLPVAMELQKMEGVYLILIGGHVRTAFESTVGSMGMKFLENISVEKAFMSSDGVSLTKGA 183
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
+M ++E + M AA++ ++ D+SK K ++ + D + I D+ L + +E
Sbjct: 184 TTPNMDQAEIKKEMMAAADQNYLVCDTSKIGKRTICSYAKIGDFDGFILDEPLSDEMKEA 243
Query: 237 LSASGLVL 244
+ G ++
Sbjct: 244 FESYGTII 251
>ref|YP_001504080.1| transcriptional regulator, DeoR family [Shewanella pealeana ATCC
700345]
gb|ABV89545.1| transcriptional regulator, DeoR family [Shewanella pealeana ATCC
700345]
Length = 268
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 11/245 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II L++Q+ ++ V LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 21 RRHSIISLLNQQGEVSVEELSLRFETSEVTIRKDLATLEKSGLLLRRYGGAVAVPDEVMQ 80
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCA-LLAEVLCQTKRNIKVITNSC 118
+ +++ N K IA AAEL++D++ I+I+SGST + L+ E+ +KR + V+TNS
Sbjct: 81 QFSAKIAPN---KLSIARAAAELIKDHNRIIIDSGSTTSGLIGEL--NSKRGLLVMTNSL 135
Query: 119 FIANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+AN I + +L+ GG + P+SE G + ++++ ++ +++F+G DG + G
Sbjct: 136 ALANAIHDLENEPTLLMTGGTWDPHSESFQGQIAEQVLRSYNFDQLFIGADGIDLQRGTT 195
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ + + MA+ + EVV++ +S K + +L + ++ ++TD L + E +
Sbjct: 196 TFNELTGLS-KVMAEVSREVVVMLESEKLGRRIPNLELPWSKISVLVTDDKLPSEALETI 254
Query: 238 SASGL 242
S G+
Sbjct: 255 SNHGV 259
>ref|YP_001558304.1| transcriptional regulator, DeoR family [Clostridium phytofermentans
ISDg]
gb|ABX41565.1| transcriptional regulator, DeoR family [Clostridium phytofermentans
ISDg]
Length = 257
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R I+ + ++ K+ V+ LS+ DVS+ TIR+DL+KL+ +GL + +G AVLN ++
Sbjct: 4 IERKNLILAKLQKENKVVVSELSQLFDVSEETIRRDLEKLDKEGLAIKTYGGAVLNENNN 63
Query: 61 ----LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
VR + N + K+RIAE A L++D+ TIM+++ ST +A + + K+NI +ITN
Sbjct: 64 AELPFTVRENTNVSQKQRIAEIVAGLIKDDSTIMLDASSTALFVARNI-KHKKNITLITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S I + S ++ GG + S VG ++M+S +HV+ V + G + GF
Sbjct: 123 SIEILVELADVSGWNMLSTGGTVKEGSLALVGHQAEKMLSSYHVDIAIVSSKGIDSIEGF 182
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
SE + M D A + +++ DSSKF + S ++++ ++TD
Sbjct: 183 SDSSETHSEIKKKMLDCAFKKILVVDSSKFDRISFKKIGEISELTTIVTD 232
>ref|YP_001476212.1| transcriptional regulator, DeoR family [Shewanella sediminis
HAW-EB3]
gb|ABV39084.1| transcriptional regulator, DeoR family [Shewanella sediminis
HAW-EB3]
Length = 256
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 140/244 (57%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II L++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIISLLTEQGEVSVDELSLRFETSEVTIRKDLSALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R++ N K IA+ AA+L+ D++ I+I+SGST + L L K + V+TNS
Sbjct: 69 QFTARIAPN---KLSIAQAAAKLINDHNRIIIDSGSTTSGLVREL-NGKNGLVVMTNSLQ 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQIAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EVV++ +S K + +L+ ++++ ++TD+ L + E +S
Sbjct: 185 FNELTGLS-KVMAEVSREVVVMLESEKLGRRIPNLELAWSNISVLVTDENLPAEAVETIS 243
Query: 239 ASGL 242
G+
Sbjct: 244 NHGV 247
>ref|YP_001744854.1| glucitol operon repressor [Escherichia coli SMS-3-5]
gb|ACB16188.1| glucitol operon repressor [Escherichia coli SMS-3-5]
Length = 257
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGSTVLQMVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDVGIDPAFRQALE 243
Query: 239 ASGL 242
G+
Sbjct: 244 KKGI 247
>ref|YP_001052692.1| transcriptional regulator, DeoR family [Shewanella baltica OS155]
gb|ABN63823.1| transcriptional regulator, DeoR family [Shewanella baltica OS155]
Length = 257
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 141/244 (57%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II ++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIITILNELGEVSVDELSLRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IA+ AA+L++D++ I+I+SG+T + L E L KR + V+TN+
Sbjct: 69 QFSAKIAPN---KLSIAKTAAQLIKDHNRIIIDSGTTTSGLIEQL-NDKRGLVVMTNALH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ DS K K +L A V+ ++TD +DK + +S
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMVDSDKIGKRIPNLELPWAKVSVLVTDDRIDKCALKQIS 243
Query: 239 ASGL 242
G+
Sbjct: 244 DQGV 247
>ref|NP_792979.1| transcriptional regulator, DeoR family [Pseudomonas syringae pv.
tomato str. DC3000]
gb|AAO56674.1| transcriptional regulator, DeoR family [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 252
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 12/234 (5%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
RL+ I++L++Q++++ + L++ L VS+ TIR+D LE +G LRR HG A+L +
Sbjct: 6 RLDEIMRLLAQQQRVKASDLAQLLFVSEETIRRDFKHLEEEGRLRRIHGGAILPRSSEEL 65
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
L R K IA AA+LV + I +++G++ LA+ L + + +K+ITNS
Sbjct: 66 PLQERSRLKPRAKAGIATCAAQLVTEGMAIFLDTGTSTLALAQQLTRFSQ-LKIITNSLD 124
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM-- 177
IA I S Q+++ G + +GP E FH + F+G G + DLG M
Sbjct: 125 IAQLISHQSDNQVLVAPGDVRRTDNALIGPHTLEFARQFHYDIAFMGIGGIDLDLGLMDY 184
Query: 178 --GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ M+R VR+ A + V+L D KF + ++ L A + ++T++ L
Sbjct: 185 QEPEAMLRRTLVRHCARS----VVLADDGKFGHRTFINTLPFAAITTLVTNRPL 234
>ref|NP_762943.1| Transcriptional regulator of sugar metabolism [Vibrio vulnificus
CMCP6]
gb|AAO07933.1|AE016811_174 Transcriptional regulator of sugar metabolism [Vibrio vulnificus
CMCP6]
Length = 262
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R +RI+ + Q V+ + +VS VTIR DL+ LE +G + R +G A LN +
Sbjct: 6 RRQRIMSHIRQHGSGKVDDFALAFNVSAVTIRHDLNLLEKEGCVFRCYGGANLNPNFAFD 65
Query: 63 VRL----SYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L N +IK+ IA AA+L+ D + I+++SGST AL+ + L Q K + V+TN+
Sbjct: 66 QPLYRKDQINRDIKQMIAYAAAQLIGDGEAIILDSGSTIALMPQHLTQKK--LVVMTNAL 123
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A + + ++ ++GG + S G ++ I + +++F+G DGF+ G
Sbjct: 124 NTAYQLSHNDNVELHVIGGSLRRASCSLTGHHGEQQIRTYLFDKLFLGVDGFDLQAGITT 183
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
D ++ R M D A +V+ +TDSSKF + S + ++ ++TD + T E L
Sbjct: 184 PDNHEAQVNRAMCDVARQVIAVTDSSKFGRKSFCMIRAANQIDVLVTDSHIPHATHEALL 243
Query: 239 ASGL 242
A G+
Sbjct: 244 AMGV 247
>ref|NP_937574.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
YJ016]
dbj|BAC97544.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
YJ016]
Length = 263
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R +RI+ + Q V+ + +VS VTIR DL+ LE +G + R +G A LN +
Sbjct: 7 RRQRIMSHIRQHGSGKVDDFALAFNVSAVTIRHDLNLLEKEGCVFRCYGGANLNPNFAFD 66
Query: 63 VRL----SYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L N +IK+ IA AA+L+ D + I+++SGST AL+ + L Q K + V+TN+
Sbjct: 67 QPLYRKDQINRDIKQMIAYAAAQLIGDGEAIILDSGSTIALMPQHLTQKK--LVVMTNAL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A + + ++ ++GG + S G ++ I + +++F+G DGF+ G
Sbjct: 125 NTAYQLSHNDNVELHVIGGSLRRASCSLTGHHGEQQIRTYLFDKLFLGVDGFDLQAGITT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
D ++ R M D A +V+ +TDSSKF + S + ++ ++TD + T E L
Sbjct: 185 PDNHEAQVNRAMCDVARQVIAVTDSSKFGRKSFCMIRAANQIDVLVTDSHIPHATHEALL 244
Query: 239 ASGL 242
A G+
Sbjct: 245 AMGV 248
>ref|ZP_01844092.1| transcriptional regulator, DeoR family [Shewanella baltica OS223]
gb|EDK48211.1| transcriptional regulator, DeoR family [Shewanella baltica OS223]
Length = 257
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 142/244 (58%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II ++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIITILNELGEVSVDELSLRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+ +++ N K IA+ AA+L++D++ I+I+SG+T + L E L KR + V+TN+
Sbjct: 69 QFSAKIAPN---KLSIAKTAAQLIKDHNRIIIDSGTTTSGLIEQLND-KRGLVVMTNALH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ DS K K +L A V+ ++TD +D++ + +S
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMVDSDKIGKRIPNLELPWAKVSVLVTDDRIDERALKQIS 243
Query: 239 ASGL 242
G+
Sbjct: 244 DQGV 247
>ref|NP_457231.1| DNA-bindng transcriptional repressor [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
ref|NP_461758.1| DNA-bindng transcriptional repressor [Salmonella typhimurium LT2]
ref|NP_806440.1| DNA-bindng transcriptional repressor [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
ref|YP_151864.1| DNA-bindng transcriptional repressor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
ref|YP_217757.1| DNA-bindng transcriptional repressor [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
ref|YP_001589702.1| hypothetical protein SPAB_03528 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
ref|ZP_02342091.1| hypothetical protein Sentent_24770 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
ref|ZP_02344082.1| hypothetical protein Sentente_07473 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
ref|ZP_02352032.1| hypothetical protein Sententeri_19544 [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
ref|ZP_02560391.1| hypothetical protein Sente_09250 [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
ref|ZP_02568232.1| hypothetical protein Senten_20672 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
ref|ZP_02575230.1| hypothetical protein Sententer_01000034_0100021989 [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
ref|ZP_02651935.1| hypothetical protein Sententeric_13089 [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
ref|ZP_02655953.1| hypothetical protein Sententerica_07959 [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
ref|ZP_02660925.1| hypothetical protein Senteenterica_06733 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
ref|ZP_02667497.1| hypothetical protein Senterienterica_13071 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
ref|ZP_02671480.1| hypothetical protein Sentericenterica_06190 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
ref|ZP_02679347.1| hypothetical protein Sentericaenterica_16935 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
ref|ZP_02684024.1| hypothetical protein Salmentericaenterica_13263 [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
ref|ZP_02697956.1| hypothetical protein Saentericaenterica_07988 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
ref|ZP_02704288.1| hypothetical protein Salmoentericaenterica_11405 [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
ref|ZP_02832477.1| hypothetical protein Salentericaenterica_13912 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
pir||AI0844 glucitol operon repressor [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gb|AAL21717.1| transcriptional repressor for glucitol operon [Salmonella
typhimurium LT2]
emb|CAD05944.1| glucitol operon repressor [Salmonella enterica subsp. enterica
serovar Typhi]
gb|AAO70300.1| glucitol operon repressor [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
gb|AAV78552.1| glucitol operon repressor [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gb|AAX66676.1| transcriptional repressor for glucitol operon (DeoR family)
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gb|ABX68869.1| hypothetical protein SPAB_03528 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 257
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE+ G + R +G VLN S
Sbjct: 6 RQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IA A + + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAGSTVLQMVPLLSRFS-NITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + ++G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNVGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-NAMCNAAREVILMADSSKFGRKSPNVVCSLETVDKLITDAGIDPAFRQALE 243
Query: 239 ASGL 242
A G+
Sbjct: 244 AKGI 247
>ref|ZP_02644388.1| hypothetical protein Senterenterica_02105 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
Length = 257
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE+ G + R +G VLN S
Sbjct: 6 RQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IA A + + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAGSTVLQMVPLLSRFS-NITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + ++G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNVGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-NAMCNAAREVILMADSSKFGRKSPNVVCSLETVDKLITDTGIDPAFRQALE 243
Query: 239 ASGL 242
A G+
Sbjct: 244 AKGI 247
>ref|YP_910196.1| probable DeoR-type transcriptional regulator [Bifidobacterium
adolescentis ATCC 15703]
dbj|BAF40114.1| probable DeoR-type transcriptional regulator [Bifidobacterium
adolescentis ATCC 15703]
Length = 273
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 9/240 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNS 57
R I+ + + + + +LS++L VS +TIR+D+ L KGLL+R HG AV L S
Sbjct: 11 QRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIADLADKGLLKRVHGGAVSTSTLLS 70
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRN--IKVIT 115
+V+ + +K IA++A + V D I I G+T + A+ L +++++ I ++T
Sbjct: 71 EPLFSVKSQMDIGLKDAIAQEAVKYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILT 130
Query: 116 NSCFIANYIRQYSS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
NS +A ++ S ++I+ GG S VGP+ ++++ VN VF+GT +
Sbjct: 131 NSIPVAELVQALESKDVEVIVTGGVTT-RSNSLVGPIADKVVASLRVNTVFLGTHSVSIP 189
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
GF+ + + + M D A+ +ILTD +K+S TSL V+ VITD LD +
Sbjct: 190 RGFLMPNSLEAATDMAMMDIADRTIILTDHTKWSCTSLSLFARFDQVDTVITDDGLDPDS 249
>ref|NP_349557.1| Lactose phosphotransferase system repressor lacR [Clostridium
acetobutylicum ATCC 824]
gb|AAK80897.1|AE007792_8 Lactose phosphotransferase system repressor lacR [Clostridium
acetobutylicum ATCC 824]
Length = 254
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 135/240 (56%), Gaps = 17/240 (7%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV-LNSGDDL 61
R +RI++++ I + ++E+L V+++T+R+DL LE+KGL+ R +G A +N+ + +
Sbjct: 6 RFQRILEMLETNNIIKITDINEKLGVTEITVRRDLKVLENKGLIERIYGGAKKVNANNKV 65
Query: 62 -------NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVI 114
N + N KR IA+ A+E++++ND I I G+T L+ + L + +KVI
Sbjct: 66 EFKELSNNEKRKINIEQKRHIAKLASEMIEENDIIYIGPGTTSELIYDYLNVSY--VKVI 123
Query: 115 TNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG-FNKD 173
TNS + + +IIL+GG+Y+ +++V VG E + V FVGT+G +N +
Sbjct: 124 TNSMSVFLKFKDDKRYEIILVGGHYRSHTDVFVGSFTNENLRSMRVKTAFVGTNGIYNDN 183
Query: 174 LGFMGKDMMRSEGV--RYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
+ ++ EG+ + + D A + +L DSSK K SL DV +ITD+ +D+
Sbjct: 184 ITTSNEE----EGMCQKIIMDNAAKKYVLCDSSKVGKEDFFSFYSLEDVTGIITDKNIDE 239
>ref|ZP_02029360.1| hypothetical protein BIFADO_01817 [Bifidobacterium adolescentis
L2-32]
gb|EDN82439.1| hypothetical protein BIFADO_01817 [Bifidobacterium adolescentis
L2-32]
Length = 267
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 9/240 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNS 57
R I+ + + + + +LS++L VS +TIR+D+ L KGLL+R HG AV L S
Sbjct: 5 QRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIADLADKGLLKRVHGGAVSTSTLLS 64
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRN--IKVIT 115
+V+ + +K IA++A + V D I I G+T + A+ L +++++ I ++T
Sbjct: 65 EPLFSVKSQMDIGLKDAIAQEAVKYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILT 124
Query: 116 NSCFIANYIRQYSS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
NS +A ++ S ++I+ GG S VGP+ ++++ VN VF+GT +
Sbjct: 125 NSIPVAELVQALESKDVEVIVTGGVTT-RSNSLVGPIADKVVASLRVNTVFLGTHSVSIP 183
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
GF+ + + + M D A+ +ILTD +K+S TSL V+ VITD LD +
Sbjct: 184 RGFLMPNSLEAATDMAMMDIADRTIILTDHTKWSCTSLSLFARFDQVDTVITDDGLDPDS 243
>ref|NP_311590.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
Sakai]
ref|ZP_02740491.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4045]
ref|ZP_02752052.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4206]
ref|ZP_02766454.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4115]
ref|ZP_02774991.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4113]
ref|ZP_02780458.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4401]
ref|ZP_02787902.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4501]
ref|ZP_02793804.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4486]
ref|ZP_02799769.1| glucitol operon repressor [Escherichia coli O157:H7 str. EC4196]
ref|ZP_02803695.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4076]
ref|ZP_02812968.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC869]
ref|ZP_02817037.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC4042]
ref|ZP_02825220.1| DNA-bindng transcriptional repressor [Escherichia coli O157:H7 str.
EC508]
dbj|BAB36986.1| regulator for gut operon [Escherichia coli O157:H7 str. Sakai]
gb|EDU33388.1| glucitol operon repressor [Escherichia coli O157:H7 str. EC4196]
Length = 257
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE G + R +G VLN S
Sbjct: 6 RQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IAE A + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKELIAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRF-NNITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDADIDPAFRQALE 243
Query: 239 ASGL 242
G+
Sbjct: 244 EKGI 247
>ref|ZP_01545715.1| glycerol-3-phosphate regulon repressor [Stappia aggregata IAM
12614]
gb|EAV45644.1| glycerol-3-phosphate regulon repressor [Stappia aggregata IAM
12614]
Length = 260
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 6/230 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R I++L Q ++ V+ L+ + DVS TIRKDL++L + LL R HG A+L+SG +
Sbjct: 3 IERHNAILELARQMGRVSVDDLARRFDVSPQTIRKDLNELCDRRLLARTHGGALLSSGIE 62
Query: 61 LNVRLSYNYNIKRR----IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
NV I R I EK A L+ DN +I I G+T +A+ L Q R + VITN
Sbjct: 63 -NVGYEARRIISSREKADIGEKVASLIPDNASIFINIGTTTEAVAQALLQ-HRGLMVITN 120
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+ +A+ +R YS ++++ GG + + VG + + F V+ +G + D
Sbjct: 121 NINVASLMRGYSQIEVVIAGGVLRHSDGGIVGEAAVDFMRQFKVDFAVIGASAIDPDGSL 180
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
+ D + + + D A V++ DS+KF +T+ V L V+ +TD
Sbjct: 181 LDYDYREVKVTKTIMDNARHVILAADSTKFERTAPVRVGHLRQVSTFVTD 230
>ref|YP_001763237.1| transcriptional regulator, DeoR family [Shewanella woodyi ATCC
51908]
gb|ACA89142.1| transcriptional regulator, DeoR family [Shewanella woodyi ATCC
51908]
Length = 256
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 140/244 (57%), Gaps = 9/244 (3%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD--- 59
R II +++++ ++ V+ LS + + S+VTIRKDL LE GLL R +G AV +
Sbjct: 9 RRHSIISILNEQGEVSVDELSTRFETSEVTIRKDLAALEKTGLLLRRYGGAVAIPDEVTQ 68
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+++ N K IAE AAEL+ D++ I+I+SGST + L + L +KR + V+TNS
Sbjct: 69 QFTAKIAPN---KLSIAETAAELINDHNRIIIDSGSTTSGLIQQL-NSKRGLLVMTNSLQ 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+AN I + + +L+ GG + P+SE G + ++++ ++ +++F+G DG + + G
Sbjct: 125 LANAIHELENEPTLLMTGGTWDPHSESFQGQVAEQVLRSYNFDQLFIGADGIDLERGTTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + MA+ + EV+++ +S K + +L + V+ ++TD L + E ++
Sbjct: 185 FNELTGLS-KVMAEVSREVIVMLESDKVGRRIPNLELPWSKVSVLVTDDRLAAEAVESIT 243
Query: 239 ASGL 242
G+
Sbjct: 244 NHGV 247
>ref|YP_236129.1| regulatory protein, DeoR [Pseudomonas syringae pv. syringae B728a]
gb|AAY38091.1| regulatory protein, DeoR [Pseudomonas syringae pv. syringae B728a]
Length = 278
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 12/234 (5%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
RL+ I++L++Q++++ + L++ L VS+ TIR+D LE +G LRR HG A+L +
Sbjct: 32 RLDEIMRLLAQQQRVKASDLAQLLFVSEETIRRDFKHLEEEGRLRRIHGGAILPRSSEEL 91
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
L R K IA +AA+LV + I +++G++ LA+ L + + +K+ITNS
Sbjct: 92 PLQERSRLKPRAKACIAVRAAQLVSEGMAIFLDTGTSTLALAQQLTRFSQ-LKIITNSLD 150
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM-- 177
IA I S Q+++ G + +GP E FH + F+G G + D G M
Sbjct: 151 IAQLISHQSDNQVLVAPGDVRRTDNALIGPHTLEFARQFHYDIAFMGIGGIDLDFGLMDY 210
Query: 178 --GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ M+R VR+ + V+L D KF + ++ L A + ++T++AL
Sbjct: 211 QEPEAMLRRTLVRHCTRS----VVLADDGKFGHRTFINTLPFAAITTLVTNRAL 260
>ref|ZP_02436388.1| hypothetical protein BACSTE_02646 [Bacteroides stercoris ATCC
43183]
gb|EDS14956.1| hypothetical protein BACSTE_02646 [Bacteroides stercoris ATCC
43183]
Length = 254
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 5/233 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYA--VLNSGDD 60
R + I++ +++ I VN +++ L+V+ VTIRKDL LE K LL R HG A + +
Sbjct: 7 RHKYILECLNRNGFIKVNDIAKDLEVTPVTIRKDLKYLEEKKLLYRTHGSASPINPVTPE 66
Query: 61 LNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+NV + N K+RIA AA+L++ ND+I+I SGST +LAE L + I V+T S
Sbjct: 67 INVQEKEKLQTNEKKRIAIAAAKLIEKNDSIIIASGSTVHMLAEQLTPIEHLI-VVTASL 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A + ++ ++I LGG + NS +G ++ +++F+G DG + + G
Sbjct: 126 KTAILLNAVNNIEVIQLGGTVRKNSCSVIGDYTSQLFEQITCSKLFLGVDGIDLEHGITN 185
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
++ + + M +A+ +IL DSSKF + L V+ +ITD + K
Sbjct: 186 SNIAEANLNKKMIEASLRTIILADSSKFGRRGFGKICDLNRVDVIITDSGISK 238
>ref|YP_001371444.1| transcriptional regulator, DeoR family [Ochrobactrum anthropi ATCC
49188]
gb|ABS15615.1| transcriptional regulator, DeoR family [Ochrobactrum anthropi ATCC
49188]
Length = 262
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 131/248 (52%), Gaps = 8/248 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG--- 58
+R + II L+ + + +D++ L+++ VSK+TI +DLD LE G+LR+ G A +++G
Sbjct: 11 DRRQAIINLLIENQAVDLDDLADRFAVSKMTIHRDLDSLEHTGVLRKVRGGATIDTGTQF 70
Query: 59 -DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
D R + K+++A A ELV+ T+MI GS A+L +L + KR + VITN+
Sbjct: 71 ESDFRFRERQDGEAKQKMARAALELVEPGMTVMINDGSMAAVLGGMLLE-KRPLTVITNN 129
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF- 176
I + ++ + +I LGG Y G L + +S + F+ + N L +
Sbjct: 130 AVIIDELKGENGINLIALGGTYSAKFNAFFGILTEGALSHLSADIAFISSPAVNGKLVYH 189
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
M ++++R++ R M +A +L + +F + +L L+D + +ITD + D
Sbjct: 190 MDENVVRTK--RAMTASAARTCLLVNHQRFGRPALHVMADLSDFDAIITDASPDATVLAD 247
Query: 237 LSASGLVL 244
L +G+ L
Sbjct: 248 LEQAGIAL 255
>ref|ZP_01000679.1| transcriptional regulator, DeoR family protein [Oceanicola
batsensis HTCC2597]
gb|EAQ02152.1| transcriptional regulator, DeoR family protein [Oceanicola
batsensis HTCC2597]
Length = 258
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 5/233 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL---NSGD 59
R +RI+ +++ +++ N L+E L+VS+ T+R+DL L G + R HG AVL S
Sbjct: 6 RHQRILSMLAANQQVSANDLAEMLNVSRETVRRDLVDLAESGQVDRVHGGAVLPEPRSEQ 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R++ K IA +AA LVQ T+ +++G+T ++ A L + I VITNS
Sbjct: 66 PFRQRMTAQLRAKSEIARRAAALVQPGQTLFVDAGTTTSIFARELAKLS-GISVITNSLD 124
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A + Q + Q++LLGG + TVG L I FH + F + G
Sbjct: 125 VATTL-QGAGRQVLLLGGRMAADVPATVGELTLAEIWRFHADVCFSAPVAVHPAKGAFFY 183
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
D+ +E M+ A ++L D SK +TS V ++++ ++T++A +
Sbjct: 184 DLQEAEIASAMSAQAPRSILLADHSKLGETSRVRSWEASEIDVLVTNKAAPSE 236
>ref|NP_696383.1| probable DeoR-type transcriptional regulator [Bifidobacterium
longum NCC2705]
gb|AAN25019.1| probable DeoR-type transcriptional regulator [Bifidobacterium
longum NCC2705]
Length = 298
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 9/240 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNS 57
R I+ + + + + +LS++L VS +TIR+D+ +L KGLL+R HG AV L S
Sbjct: 32 QRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTSTLLS 91
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRN--IKVIT 115
+V+ + +K IA++A + V D I I G+T + A+ L +++++ I ++T
Sbjct: 92 EPLFSVKSQMDIGLKDAIAQEAIKYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILT 151
Query: 116 NSCFIANYIRQYSS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
NS +A ++ S ++I+ GG S VGP+ ++++ VN VF+GT +
Sbjct: 152 NSIPVAELVQALESKDVEVIVTGGVIT-RSNSLVGPIADKVVASLRVNTVFLGTHSVSIP 210
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
GF+ + + + M D A+ ++LTD +K+S TSL V+ VITD LD +
Sbjct: 211 RGFLMPNSLEAATDMAMMDIADRTIVLTDHTKWSCTSLSLFARFDQVDTVITDDGLDPDS 270
>ref|NP_390999.1| hypothetical protein BSU31210 [Bacillus subtilis subsp. subtilis
str. 168]
sp|O05261|YULB_BACSU Uncharacterized HTH-type transcriptional regulator yulB
emb|CAB07948.1| unknown [Bacillus subtilis]
emb|CAB15099.1| yulB [Bacillus subtilis subsp. subtilis str. 168]
Length = 258
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 6/239 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R ++I+++V+ + I V+ LS+ V++ TIR+DL+KLE + L R HG AV +
Sbjct: 6 RQQKIVEIVNMRSSIRVSELSDIFSVTEETIRRDLEKLEKEHKLSRSHGGAVSIQQKESE 65
Query: 63 VRLS----YNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+ S N K+ IA +AA+ V+ D I++++ +T +A++L + + VITNS
Sbjct: 66 IHFSEREITNVIEKKAIAHEAAKYVKSGDRIILDASTTAWYMAKILPDIE--LTVITNSM 123
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A + + +I GG S GPL + + +HVN+ F+ GF+ G
Sbjct: 124 KAAIELSNKENISVISTGGILLEKSLSFAGPLAERSLETYHVNKTFLSCKGFDVHNGMSD 183
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ ++ + M + +++ +++ DSSK+ H SL DV+R+ITD LD + + L
Sbjct: 184 SNEWQALLKKRMIERSDQTILMADSSKWGNREFSHIASLQDVSRLITDSGLDPASVKAL 242
>ref|YP_001238652.1| putative Transcriptional regulatory protein, DeoR family
[Bradyrhizobium sp. BTAi1]
gb|ABQ34746.1| transcriptional regulator, DeoR family [Bradyrhizobium sp. BTAi1]
Length = 253
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 8/233 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGD-- 59
+RLE I ++ QK+++ V L +QL VS +IR+DL +LE++G RR +G AVL S +
Sbjct: 6 SRLELIRAMLRQKQRVHVKDLVDQLKVSHESIRRDLRELETQGFARRVYGGAVLESQESD 65
Query: 60 -DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
RL K RI E A LV+D I ++ G+T AL +T++++ ++TNS
Sbjct: 66 QPFAERLRVGGREKMRIGEAAGALVKDGMKIFVDEGTT-ALACLKYIETRKDLTIVTNSL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+A++ S + +LGG QP + T GP I + + + GFM
Sbjct: 125 AVASHFFYQGSANVRVLGGRLQPVYQATFGPEAVAAIKEHFFDLAIIAISAVHAQRGFM- 183
Query: 179 KDMMRSEGVRYMADAAEEV--VILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
D E + A A+ VI+ DSSKF + +H L D++ VIT L
Sbjct: 184 -DYGEDEAIMRRAARAQAKRSVIVADSSKFGRLGSIHTFGLGDLDAVITAAPL 235
>ref|NP_759628.1| Transcriptional regulator of sugar metabolism [Vibrio vulnificus
CMCP6]
gb|AAO09155.1|AE016799_53 Transcriptional regulator of sugar metabolism [Vibrio vulnificus
CMCP6]
Length = 253
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 142/251 (56%), Gaps = 22/251 (8%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I +LV++K ++ V+ L+ + D S+VTIRKDL LE G L R +G A+ + ++
Sbjct: 9 RRHSISKLVNEKGEVSVDELAHKFDTSEVTIRKDLASLEKNGQLLRRYGGAIAIPKEVIH 68
Query: 63 VRLSYNYNIKR-RIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+S N + ++ ++AEKAAEL++D++ I+I+SGST L + L +KR + V+TNS +A
Sbjct: 69 EEMSQNVSDRKLKLAEKAAELIRDHNRIVIDSGSTTGALIQQL-NSKRGLVVMTNSLHVA 127
Query: 122 NYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG---------FN 171
N + + S +L+ GG + +SE G + + ++ + +++F+G DG FN
Sbjct: 128 NALNELESEPTLLMTGGTWDNHSESFQGKVAESVLRSYDFDQLFIGADGVDLTRGTTTFN 187
Query: 172 KDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
+ +G + MA+ + EV+++ +S K + +L+ ++ +IT+ L
Sbjct: 188 ELVGLS----------KVMAEVSREVIVMVESDKVGRKIPNLELAWEMIDILITNNDLLP 237
Query: 232 QTQELLSASGL 242
+ + + A+G+
Sbjct: 238 EHKAEMEANGV 248
>ref|NP_933294.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
YJ016]
dbj|BAC93265.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
YJ016]
Length = 253
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 142/251 (56%), Gaps = 22/251 (8%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I +LV++K ++ V+ L+ + D S+VTIRKDL LE G L R +G A+ + ++
Sbjct: 9 RRHSISKLVNEKGEVSVDELAHKFDTSEVTIRKDLASLEKNGQLLRRYGGAIAIPKEVIH 68
Query: 63 VRLSYNYNIKR-RIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+S N + ++ ++AEKAAEL++D++ I+I+SGST L + L +KR + V+TNS +A
Sbjct: 69 EEMSQNISDRKLKLAEKAAELIRDHNRIVIDSGSTTGALIQQL-NSKRGLVVMTNSLHVA 127
Query: 122 NYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG---------FN 171
N + + S +L+ GG + +SE G + + ++ + +++F+G DG FN
Sbjct: 128 NALNELESEPTLLMTGGTWDNHSESFQGKVAESVLRSYDFDQLFIGADGVDLTRGTTTFN 187
Query: 172 KDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
+ +G + MA+ + EV+++ +S K + +L+ ++ +IT+ L
Sbjct: 188 ELVGLS----------KVMAEVSREVIVMVESDKVGRKIPNLELAWEMIDILITNNDLLP 237
Query: 232 QTQELLSASGL 242
+ + + A+G+
Sbjct: 238 EHKAEMEANGV 248
>ref|ZP_02354557.1| glycerol-3-phosphate regulon repressor [Burkholderia oklahomensis
EO147]
ref|ZP_02361751.1| glycerol-3-phosphate regulon repressor [Burkholderia oklahomensis
C6786]
Length = 259
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 4/242 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + +++ V + + V+ L+ DV+ TIR+D++ L LLRR HG A L + +
Sbjct: 12 RQQELLEWVQRDGFVTVDDLAAHFDVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENV 71
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R ++ KR+IA AA + D ++ I G+T +A L + R ++VITN+
Sbjct: 72 SYTARQRMFHDEKRKIAALAASHIPDQASLFINLGTTTEEVARALNR-HRGLRVITNNLN 130
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A+ + Y C++++ GG +P + VG L + I F V+ +GT D
Sbjct: 131 VASMMSGYPDCEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDF 190
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + A V ++TD SKF + +LV Q L+ ++ + TD+ L + E ++
Sbjct: 191 DTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLSQIHALFTDKPLPDEMAETIAQ 250
Query: 240 SG 241
+G
Sbjct: 251 AG 252
>ref|YP_832857.1| transcriptional regulator, DeoR family [Arthrobacter sp. FB24]
gb|ABK04757.1| transcriptional regulator, DeoR family [Arthrobacter sp. FB24]
Length = 263
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 125/251 (49%), Gaps = 16/251 (6%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + I+ V +++ + V+ L++QL VS +T+R+D++ LE G + R HG A L GD
Sbjct: 6 RHQAIVDAVQRERVVRVSDLAQQLGVSLMTVRRDIELLEEGGRVERIHGGAKL-PGDAST 64
Query: 63 VRLSYNYNI------KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ KR IA +AA LV + + + +G+T LA+ L R I V+TN
Sbjct: 65 HEPGFEQKSTQLTAEKRAIALEAASLVHEGMAVGLGAGTTTWALAKELVNGPR-ITVVTN 123
Query: 117 SCFIANYIRQYSSC-------QIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG 169
S IA+ SS +IL+GG P S+ VGP+ + H++ +F+G G
Sbjct: 124 SIRIADLFHHGSSSGAGRYGSTVILIGGERTP-SDALVGPIATGALKQLHLDLLFLGVHG 182
Query: 170 FNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ D GF +++ +E R A+ +VV++ D +K+ + D + VI+D L
Sbjct: 183 MDPDAGFTTPNLLEAETDRAFVAASRKVVVVADHTKWGTQGMSTIAGFEDADEVISDAGL 242
Query: 230 DKQTQELLSAS 240
+ +L S
Sbjct: 243 SSDARRILQES 253
>ref|ZP_01158541.1| hypothetical GlpR, transcriptional regulators of sugar metabolism
[Photobacterium sp. SKA34]
gb|EAR57497.1| hypothetical GlpR, transcriptional regulators of sugar metabolism
[Photobacterium sp. SKA34]
Length = 258
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 130/246 (52%), Gaps = 5/246 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG---- 58
R ++I+ + V+ ++Q DVS VTIR DL+ LE +G + R +G A LN
Sbjct: 6 RRQQIMAHIRNNGSGKVDEFTQQYDVSAVTIRHDLNLLEKEGCVFRCYGGATLNPNFAFE 65
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
L+ + N + K+ IAE AA+LV D DTI+++SG+T L+ + L K+++ V+TN+
Sbjct: 66 QPLHRKGQLNRSAKQYIAEAAAKLVNDGDTIILDSGTTIGLMPKYL-NNKQHLVVMTNAL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A + ++ + ++GG + S G +E + + +++F+G DGF+ G
Sbjct: 125 NTAYQLSNNNNVDLHVVGGNLRRTSCSLTGHQGEEQVRAYLFDKLFLGVDGFDLQAGITT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
D ++ R M D A +V+ + DSSKF + S + ++ ++TD + + L+
Sbjct: 185 PDNHEAQMNRAMCDVARQVIAVADSSKFGRKSFCMIRAAHQIDILVTDSNIPHAIHQALT 244
Query: 239 ASGLVL 244
G+ +
Sbjct: 245 DLGVTV 250
>ref|YP_089508.1| DNA-bindng transcriptional repressor [Mannheimia succiniciproducens
MBEL55E]
gb|AAU38923.1| GlpR protein [Mannheimia succiniciproducens MBEL55E]
Length = 258
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 15/244 (6%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I++ + K V L++ + TIRKDL LE++ + R +G VL + D+++
Sbjct: 11 RQSAIVEFLQINGKTAVEQLAQIFKTTGTTIRKDLTALEAEKKVLRAYGSVVLVNKDEID 70
Query: 63 V----RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+ + + N +KRRI +KA E + D D+++++SG+T + L + R++ ++TNS
Sbjct: 71 LPEANKTNTNLEVKRRIGQKATEFIGDGDSLLMDSGTTVLQMVPYLAKY-RDLTIMTNSL 129
Query: 119 FIANYI----RQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDL 174
I N + R Y ++++ GG Y+ S G L + + F +++F+GT+ F+ D
Sbjct: 130 HIMNALTGLERDY---ELLITGGTYRQKSASFHGILAESTVEKFTFDKLFIGTNSFDLDY 186
Query: 175 GFMGKDMMRSEGV-RYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
G + + GV + M AA E+++L DSSKF + S L +N ++TD+ LD
Sbjct: 187 GLTTFNEVH--GVSKSMCKAAREIIVLADSSKFQRRSPNVVCPLEKINTIVTDKNLDPAI 244
Query: 234 QELL 237
+ L
Sbjct: 245 HQAL 248
>ref|NP_252273.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa
PAO1]
ref|ZP_00967957.1| COG1349: Transcriptional regulators of sugar metabolism
[Pseudomonas aeruginosa C3719]
ref|ZP_00973931.1| COG1349: Transcriptional regulators of sugar metabolism
[Pseudomonas aeruginosa 2192]
ref|ZP_01367015.1| hypothetical protein PaerPA_01004166 [Pseudomonas aeruginosa PACS2]
ref|YP_789581.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa
UCBPP-PA14]
ref|YP_001346944.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa PA7]
sp|Q51391|GLPR_PSEAE Glycerol-3-phosphate regulon repressor
gb|AAG06971.1|AE004779_3 glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa
PAO1]
gb|ABJ12817.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa
UCBPP-PA14]
gb|EAZ53941.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa
C3719]
gb|EAZ59722.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa
2192]
gb|ABR83943.1| glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa PA7]
Length = 251
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 5/248 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + II+ V ++ + + +++ V+ TIR+D+++L +GLLRR HG A +S +
Sbjct: 6 RQQSIIEEVRERGYLSIEEMAQMFAVTPQTIRRDINQLAEQGLLRRYHGGAAYDSSIENT 65
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+R + K+RIAE A LV DN ++ I G+T +A L RN+K+ITN+
Sbjct: 66 AYTMRADQMRDEKQRIAEAVASLVPDNASLFINIGTTTEAIARALL-NHRNLKIITNNLH 124
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A + ++++ GG + + + VG + I F V+ VG G ++D +
Sbjct: 125 VAATLSAKEDFEVLVAGGTVRSDGGI-VGQAAVDFIQQFRVDFALVGISGIDEDGSLLDF 183
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + + D A +V + DSSKF + ++V ++ VNRVI+D L++
Sbjct: 184 DYQEVRVSQAIIDNARQVFLAADSSKFGRNAVVRLGPISLVNRVISDSPPPAAIARLMAQ 243
Query: 240 SGLVLDFV 247
+ LD V
Sbjct: 244 HKVHLDLV 251
>ref|ZP_02544232.1| Putative aga operon transcriptional repressor [candidate division
TM7 single-cell isolate TM7c]
Length = 254
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS----G 58
R +I++ + K+ I V+ LS++L VS VTIRKDL LE +G L R HG A
Sbjct: 7 RQAKILESLETKRYISVSELSDKLKVSVVTIRKDLTLLEQEGYLHRTHGGASKQMRYVFD 66
Query: 59 DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
++ + + N K RI +KA + +++N+ I++ SGST LLA+ L RN+ V+T S
Sbjct: 67 QTVSEKETLNVEEKTRIIDKALDYIKENEFIILSSGSTAHLLAQKLYGL-RNLTVLTPSL 125
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+A + + + I LGG + NS TVG L +E +S F +F+G +G + D G
Sbjct: 126 RVALEVCKNPNVNTIHLGGEVRKNSTSTVGVLAEETLSNFSCTTLFLGIEGIDLDYGLSS 185
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
++ + + M + ++ ++L DSSK K + ++ +ITD D + E L
Sbjct: 186 TNVGEAHLNKKMMERVDKTIVLADSSKIHKRGFGFICYVEKIDMLITDSNADPEFVEELE 245
Query: 239 ASGL 242
G+
Sbjct: 246 KRGV 249
>ref|YP_001221089.1| putative transcriptional regulator, DeoR family [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
emb|CAN00371.1| putative transcriptional regulator, DeoR family [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 241
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 3/237 (1%)
Query: 7 IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLS 66
I+ + + V L+E S TIR+DL +L+ +G LRR HG AVL D +
Sbjct: 2 ILDRLRATRSATVAELAEVAGTSDATIRRDLARLDEQGALRRTHGGAVLVEVDAPFAEVE 61
Query: 67 -YNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIR 125
N K RIA AA +QD +++++ G+T LAE L R + VIT + + +R
Sbjct: 62 QVNREAKERIARTAASQIQDGQSVVLDIGTTTLHLAEQL--RGRAVTVITANVAAFDVLR 119
Query: 126 QYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSE 185
S ++ILL G + P GPL E + + H + FVG G + M +
Sbjct: 120 DDRSVRLILLPGDWDPVYRSVSGPLTAESLRMLHADHAFVGVSGIADNGDLRDTTMAQVP 179
Query: 186 GVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASGL 242
R MA+ ++ V +L DSSKF T A + ++IT+ A ++ + L+ G+
Sbjct: 180 IKRAMAEMSDRVTVLADSSKFPGTGAGRVAPTASLTQLITEAAPHERVSQCLADKGV 236
>ref|ZP_02072346.1| hypothetical protein BACUNI_03792 [Bacteroides uniformis ATCC 8492]
gb|EDO52181.1| hypothetical protein BACUNI_03792 [Bacteroides uniformis ATCC 8492]
Length = 253
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 5/237 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL-NSGDDL 61
R +I+ L+ + V LS +V+ VTIR+DL+ LE G ++REHG A L + G
Sbjct: 6 RRVKILDLIREDGHAKVQELSRIFNVTDVTIRQDLEALEKLGYIQREHGGAFLKDVGSFA 65
Query: 62 NVRLSYNYNI---KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
+N KR IA+KAA + + + I+++SGST +A++L Q K + VITN+
Sbjct: 66 KTGKVFNQTHIEEKREIAQKAASFISEGECIILDSGSTTTEIAKLLTQYKE-LTVITNAL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA + + +I+ GG ++ + G + + + FH N++F+ T G + D+
Sbjct: 125 NIALILGENPGINLIVTGGEFKAPTLSLTGKMAADSLKGFHANKLFLATAGISPDMSLTY 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
+ M AAEEV+++ DSSK ++ S++ VN ITD + ++ E
Sbjct: 185 PSLSDLMVKSAMIKAAEEVILVADSSKIGISAFASLGSISMVNSFITDSNISEENIE 241
>ref|YP_001190081.1| transcriptional regulator, DeoR family [Pseudomonas mendocina ymp]
gb|ABP87349.1| transcriptional regulator, DeoR family [Pseudomonas mendocina ymp]
Length = 256
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 131/253 (51%), Gaps = 21/253 (8%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
R I+ L++++ ++ V++L++ S+VTIRKDL LE GLL R +G AV +
Sbjct: 8 QRRHTILALLAEQGEVSVDALAQHFATSEVTIRKDLAALEKNGLLLRRYGGAVPVPQELF 67
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
+ K+ IA ++++ I+I+SG+T A + L K + V+TNS +A
Sbjct: 68 SEPTQAVSPYKQAIARAGVTRIREHARIIIDSGTTTAAMIPQLGY-KPGLVVMTNSLNVA 126
Query: 122 NYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG---------FN 171
N +R ++L+ GG + P+SE G + ++++ + +++F+G DG FN
Sbjct: 127 NALRDIEHEPVLLMTGGTWDPHSESFQGQVAEQVLRSYDFDQLFIGADGIDLERGTTTFN 186
Query: 172 KDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
+ LG R MA+ A EV+++ +S K + +L V+ +ITD+ LD
Sbjct: 187 ELLGLS----------RVMAEVAREVIVMVESDKIGRRIPNLELPWGSVHTLITDERLDT 236
Query: 232 QTQELLSASGLVL 244
Q E + A G+ L
Sbjct: 237 QAAEQIRARGIQL 249
>ref|YP_257646.1| transcriptional regulator, DeoR family [Pseudomonas fluorescens
Pf-5]
gb|AAY95911.1| transcriptional regulator, DeoR family [Pseudomonas fluorescens
Pf-5]
Length = 254
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 10/241 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL-NSGDDL 61
R + I++L+ Q+++I V L+ S+ TIR+DL L GL+ + HG A L +G+
Sbjct: 6 RRQHILELLRQRERISVEELARITATSQETIRRDLSDLAESGLVTKFHGGAALPPTGEHE 65
Query: 62 N---VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
N R++ + KR I AA L D+I I++G+T A L Q R + VITNS
Sbjct: 66 NTFQTRMNEHAQEKRAIGRYAAGLFCAGDSIFIDTGTTTLFFARELAQHTR-LTVITNSL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
IA I + S ++ ++GG Y+P+S VG L E I+ F+ + N+D G M
Sbjct: 125 PIAGCIGE-SGNRVFMIGGEYRPDSTQNVGTLALEQITRFNAEHAVITIGALNED-GAMD 182
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ +E R M A ++ ++ DSSK + L L ++R++ D+ + ELL+
Sbjct: 183 FSIEEAEVARAMIAQARQLTVIADSSKLERRGLFKVFPLERIDRLVIDR---QPGPELLA 239
Query: 239 A 239
A
Sbjct: 240 A 240
>ref|NP_939781.1| Putative sugar related operon transcriptional regulator (PTS
system) [Corynebacterium diphtheriae NCTC 13129]
emb|CAE49960.1| Putative sugar related operon transcriptional regulator (PTS
system) [Corynebacterium diphtheriae]
Length = 267
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 15/244 (6%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R I+ L ++ + V L++Q DV+ TIR+DL LE +GLLRR HG AV S LN
Sbjct: 10 RQATIVSLTNETGRSSVTQLAQQFDVTPETIRRDLKSLEQQGLLRRVHGGAVSGS-PKLN 68
Query: 63 -----------VRLSYNYNIKRRIAEKAAELVQDND-TIMIESGSTCALLAEVLCQT--K 108
+ + + K+ IA A L+ + +I I++GST A VL +T
Sbjct: 69 VDVFAVDDDDDLPIHQSQRRKQSIALTALSLIPGPEASIFIDAGSTTETFANVLARTYLG 128
Query: 109 RNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTD 168
+N V+T S +A + +I++GG+ + ++ VGP E + + F+GT+
Sbjct: 129 QNWLVVTTSPNVARTLSSAGVPDVIMVGGFVKARTQAIVGPHAIETLHSMRADIAFLGTN 188
Query: 169 GFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQA 228
G + GF D ++ M A+ VIL DS K +S V LADV+ V+TD+
Sbjct: 189 GIDPHKGFTTSDEREAKVKHEMIAHAQTSVILCDSGKIGHSSAVSFAQLADVDFVVTDRN 248
Query: 229 LDKQ 232
Q
Sbjct: 249 SPPQ 252
>ref|NP_357123.1| transcriptional regulator, DeoR family [Agrobacterium tumefaciens
str. C58]
gb|AAK89908.1| transcriptional regulator, DeoR family [Agrobacterium tumefaciens
str. C58]
Length = 276
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 12/249 (4%)
Query: 5 ERIIQLVSQKKKI-DVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN- 62
RII +Q+K + V ++E D S+ TIR+D+ L +G LRR G A L
Sbjct: 7 HRIILSATQEKAVVTVQDIAELTDASEATIRRDIASLHVQGKLRRVRGGAEAVHPPQLGN 66
Query: 63 -----VRLSYNYNI--KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVIT 115
R+S + NI KR IA KA +L D D I++ G+T + + R ++V+T
Sbjct: 67 LAARPFRVSESVNIDKKRAIARKAVDLCNDGDAIILNGGTTTFQMVHYMA--ARRLQVMT 124
Query: 116 NSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLG 175
NS IA ++ ++S C + + GG + + + P + I F+ R+F+G G LG
Sbjct: 125 NSFAIAEHLVKHSKCNVNVPGGAIYRDQSLILSPFENDAIRNFYARRIFLGAQGVGA-LG 183
Query: 176 FMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQE 235
M D + + + + AEE++++ DSSKF K S + L +V +ITD + +
Sbjct: 184 IMESDALVIQSEQKLMRQAEELIVMVDSSKFRKRSSLILCPLENVTTIITDDGISDEAAR 243
Query: 236 LLSASGLVL 244
++ +G+ L
Sbjct: 244 MVENAGVEL 252
>ref|ZP_02918054.1| hypothetical protein BIFDEN_01353 [Bifidobacterium dentium ATCC
27678]
gb|EDT45522.1| hypothetical protein BIFDEN_01353 [Bifidobacterium dentium ATCC
27678]
Length = 267
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 9/238 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNS 57
R I+ + + + + +LS++L VS +TIR+D+ L KGLL+R HG AV L S
Sbjct: 5 QRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIADLADKGLLKRVHGGAVTTSTLLS 64
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRN--IKVIT 115
+V+ + +K IA++A + V D I I G+T + A+ L +++++ I ++T
Sbjct: 65 EPLFSVKSQMDIGLKDAIAQEAVKYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILT 124
Query: 116 NSCFIANYIRQYSS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
NS +A ++ S ++I+ GG S VGP+ ++++ VN VF+GT +
Sbjct: 125 NSIPVAELVQALESKDVEVIVTGGVTT-RSNSLVGPIADKVVASLRVNTVFLGTHSVSIP 183
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
GF+ + + + + D A+ +ILTD +K+S TSL V+ VITD LD
Sbjct: 184 RGFLMPNSLEAATDMALMDIADRTIILTDHTKWSCTSLSLFARFDQVDTVITDDGLDP 241
>ref|YP_946156.1| putative transcriptional regulator, DeoR family [Arthrobacter
aurescens TC1]
gb|ABM10004.1| putative transcriptional regulator, DeoR family [Arthrobacter
aurescens TC1]
Length = 268
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 16/254 (6%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E I+ + + D ++ +L V+ T+RKDL LE GLLRR HG A+
Sbjct: 22 RREFILAALRANGRADAADMALELGVTNETVRKDLVALEQLGLLRRVHGGAIPVG----- 76
Query: 63 VRLSYNYNIKRR---------IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKV 113
RLSY + R IA A + + DN +++++ GST A LAE+L + R +++
Sbjct: 77 -RLSYEPPVTARTTLSEEKELIARAALQHLPDNGSVLVDGGSTTAKLAEILPR-DRALRI 134
Query: 114 ITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKD 173
TN+ IA + + LGG +P + V ++ +V+ F+GT + +
Sbjct: 135 YTNTLSIATALMDAPLLTVYTLGGRVRPVTSAEVDGWAARALAEINVDVAFLGTTAVSLE 194
Query: 174 LGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
G D + R M +A ++L D SKF K S LAD++ +ITD ++ +
Sbjct: 195 RGLTTHDPSEAAIKRLMLSSARRRILLADHSKFGKVSNCKHADLADIDLLITDAGINPEM 254
Query: 234 QELLSASGLVLDFV 247
E L ++GL ++ V
Sbjct: 255 LESLRSTGLGIEAV 268
>ref|ZP_01254559.1| Putative aga operon transcriptional repressor [Psychroflexus
torquis ATCC 700755]
gb|EAS70666.1| Putative aga operon transcriptional repressor [Psychroflexus
torquis ATCC 700755]
Length = 252
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG-- 58
M R + I+ L+ ++ I V+ L + VS VTIRKDL LE+KGLL R HG A +
Sbjct: 3 MKRHQAILDLLQKEGYIGVSELCDMFSVSAVTIRKDLKLLENKGLLFRNHGGATFENPYI 62
Query: 59 DDLNVRLSYNYNIKRR--IAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+D NV ++K + IAE A +L++ D+IMI SG++ LA+ + + N+ + T+
Sbjct: 63 NDRNVSEKEKIHVKEKNAIAEAAVKLIKPEDSIMIGSGTSMQSLAKAI-NIEGNLNITTS 121
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S ++ + + I+ LGG + +S G + ++ N +F+G DG + G
Sbjct: 122 SLNVSLELTKSPHYDILQLGGNVRHSSSSVTGHFSQAILENISCNLLFLGVDGIDMSYGC 181
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
+ + + M ++A++++IL DSSKF++ +++++ +ITD A+ +
Sbjct: 182 TTTSLSEAMLNKKMIESAQKIIILADSSKFNRKGFGKICDISEIHHIITDSAISSTLAQE 241
Query: 237 LSASGLVLDFV 247
+ G+ L V
Sbjct: 242 IRDHGIQLTLV 252
>ref|YP_001569229.1| hypothetical protein SARI_00134 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gb|ABX20087.1| hypothetical protein SARI_00134 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 257
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 6/246 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLN---SGD 59
R I++ + ++ K V L++ D + TIRKDL LE+ G + R +G VLN S
Sbjct: 6 RQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKEESDP 65
Query: 60 DLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
++ + N + K IA A + + D D+I++++GST + +L + NI V+TNS
Sbjct: 66 PIDHKTLINTHKKALIAATAVKYIHDGDSIILDAGSTVLQMVPLLSRFS-NITVMTNSLH 124
Query: 120 IANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
I N + + + Q IL+ GG ++ S G L + F +++F+GTDG + + G
Sbjct: 125 IVNSLSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNAGVTT 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
+ + + + M +AA EV+++ DSSKF + S SL V+++ITD +D ++ L
Sbjct: 185 FNEVYTVS-KAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALE 243
Query: 239 ASGLVL 244
G+ +
Sbjct: 244 EKGITV 249
>ref|YP_403128.1| putative DEOR-type transcriptional regulator [Shigella dysenteriae
Sd197]
gb|ABB61637.1| putative DEOR-type transcriptional regulator [Shigella dysenteriae
Sd197]
Length = 252
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 131/232 (56%), Gaps = 7/232 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG--- 58
+R++ I Q+V+ KK+ V++LS V++ TIR+DL+KLE +G L R +G AVLN+
Sbjct: 5 DRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLT 64
Query: 59 DDLNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
++++ R S Y K+ IA KA + + T+ +S ST L ++L Q + ++ ++TN
Sbjct: 65 ENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLL-QDRSDLTLLTN 123
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S + + Q S +++ GG N+ G + KE+IS +HV+ + + G + + G
Sbjct: 124 SAEAIHVLAQ-SEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINSGA 182
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQA 228
+ + +E + M A EVV+L D SKF + + V + +N +ITD++
Sbjct: 183 LDSNEAEAETKKTMIRQATEVVLLVDHSKFDRKAFVQLADFSHINYIITDKS 234
>gb|AAB57805.1| Glp repressor [Pseudomonas aeruginosa]
Length = 251
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 5/248 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + II+ V ++ + + +++ V+ TIR+D+++L +GLLRR HG A +S +
Sbjct: 6 RQQSIIEEVRERGYLSIEEMAQMFAVTPQTIRRDINQLAEQGLLRRYHGGAAYDSSIENT 65
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+R + K+RIAE A LV DN ++ I G+T +A L RN+K+ITN+
Sbjct: 66 AYTMRADQMRDEKQRIAEAVASLVPDNASLFINIGTTTEAIARALL-NHRNLKIITNNLH 124
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A + ++++ GG + + + VG + I F V+ VG G ++D +
Sbjct: 125 VAATLSAKEDFEVLVAGGTVRSDGGI-VGQAAVDFIQQFRVDFALVGISGIDEDGSLLDF 183
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + + D A +V + DSSKF + ++V ++ VNRVI+D L++
Sbjct: 184 DYQEVRVSQAIIDNARQVFLAADSSKFGRNAVVRLGPISLVNRVISDSPPPAVIARLMAQ 243
Query: 240 SGLVLDFV 247
+ LD V
Sbjct: 244 HKVHLDLV 251
>ref|ZP_01929025.1| hypothetical protein LMIG_02178 [Listeria monocytogenes FSL N3-165]
gb|EBA32847.1| hypothetical protein LMIG_02178 [Listeria monocytogenes FSL N3-165]
Length = 253
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 132/234 (56%), Gaps = 6/234 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHG--YAVLNSG 58
+ R++ I L+ +K + ++ L EQ +VSK T+R+D+ KL K +++ +G +V N+
Sbjct: 3 VQRIQAIENLIHEKGSVSLDDLCEQFNVSKNTVRRDIAKLLQKNTIQKVYGGVVSVYNNP 62
Query: 59 DDLNV---RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVIT 115
+++ R + N+ K+ I + AA+ +++ND I I+SG+T + LA L T + I +IT
Sbjct: 63 EEIRPFENRDTENHTEKQLIGKAAADFIEENDLIFIDSGTTTSCLAAAL-PTDKEITIIT 121
Query: 116 NSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLG 175
NS + N+ + + ++I++G ++P+++ VG +++ + F+ + G
Sbjct: 122 NSLDVINFASEMDNVKLIVIGSTFKPSTKSFVGVENWGFFEKYNITKAFMAATALSTTHG 181
Query: 176 FMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
M D++ E R+M + A E +L D +K K++L+ LA+ + ++T + +
Sbjct: 182 VMNSDILEYEIKRHMMEKATEKFLLVDHTKVDKSALLTYGELAEFDWLVTSKKM 235
>ref|YP_001626272.1| transcriptional regulators of sugar metabolism, DeoR family
[Renibacterium salmoninarum ATCC 33209]
gb|ABY24858.1| transcriptional regulators of sugar metabolism, DeoR family
[Renibacterium salmoninarum ATCC 33209]
Length = 262
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 12/248 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL-----NS 57
R ERI L + ++ V L+E DV++ T+R+DLD LES G LRR HG A+
Sbjct: 6 RHERIAGLAASDGRVSVQELAELFDVTQETVRRDLDLLESAGKLRRVHGGAIALDRLSMV 65
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDT--IMIESGSTCALLAEVLCQ-----TKRN 110
LN R S N + KRRIA A + + + T I++++G+ + AE L R
Sbjct: 66 EPSLNERQSQNQDEKRRIANAALDFLPASSTASIILDAGTATEMFAEGLASWAPSAAARE 125
Query: 111 IKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGF 170
+ VITN+ IA+ + S+ + +LGG + + VG + + + F+G +G
Sbjct: 126 LLVITNAIPIAHRLVSNSALNVEILGGRVRGLTSSAVGGSVTNQLDGLRPDIAFIGANGV 185
Query: 171 NKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALD 230
+ + G D + + M +A VV L DSSK + SLV +L ++ +ITD A +
Sbjct: 186 DSEFGLSTPDSLEAAVKAAMVHSAHLVVALVDSSKLDQQSLVRFAALDAIDVLITDAAPE 245
Query: 231 KQTQELLS 238
+ L+
Sbjct: 246 PELATALA 253
>ref|YP_001645626.1| transcriptional regulator, DeoR family [Bacillus weihenstephanensis
KBAB4]
gb|ABY43998.1| transcriptional regulator, DeoR family [Bacillus weihenstephanensis
KBAB4]
Length = 262
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 135/250 (54%), Gaps = 11/250 (4%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + I+ + + ++ VN L++ L+V+ TIR+DLD L +G L + HG A+ L
Sbjct: 9 RRKHILDELEKYNRVMVNDLAKVLNVTTETIRRDLDMLHKEGQLTKIHGGAIKKKDQTLE 68
Query: 63 V----RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
R + N KR+IA +A++LV+DND I IE G+T + + + K+N+ ++TNS
Sbjct: 69 FHFDRRRAENIEEKRKIAMEASKLVEDNDIIAIEIGTTTMQILDYI-HDKKNLTILTNSI 127
Query: 119 FIANYI----RQYSS--CQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNK 172
N I QY S C++I++GG NS G + + F VN++F DG +
Sbjct: 128 PAVNKIIELKEQYDSFDCRLIVIGGILNTNSLALSGEMTLNYLDHFTVNKLFASCDGISL 187
Query: 173 DLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
+ + ++ + + + A++VV++ D SKF+ T + +D++ + T+ LD+
Sbjct: 188 EKELTCSYIEDAQIYKQLKNNAKQVVMMADESKFNLTKFYKSGNFSDIDALYTNAKLDEA 247
Query: 233 TQELLSASGL 242
+L+++G+
Sbjct: 248 WHNVLTSNGV 257
>ref|YP_300613.1| putative transcriptional regulator of sugar metabolism
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
dbj|BAE17668.1| putative transcriptional regulator of sugar metabolism
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
Length = 254
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 4/229 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVL--NSGDD 60
R E I + K+ V LS+ L V++ T+R DL +LES+ L R HG A + N G
Sbjct: 8 RREHIYSYIKSHKRATVKQLSDYLSVTEATVRSDLRRLESENKLTRTHGGAKVTENIGSK 67
Query: 61 LNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
N RL+ + K +I++ A + ++ IMI++ ST LA++L +T + +ITN
Sbjct: 68 FNFSYRLTQKHGEKYKISKSALKKIKPQQCIMIDASSTTYELAKLLAETTMELTIITNGL 127
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
A +++ ++++GG+ +S G + +++ ++H++ F+ +GF + G
Sbjct: 128 ENAVLLKENPHLTVLVVGGFVSQDSNAITGNIDSQILEMYHIDYFFLSANGFTLENGLTD 187
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
+ + + M +E V+ L D SKF +S + ++D+N VITD+
Sbjct: 188 FSLPEVQLKKQMVQESENVIALIDKSKFGVSSTLSFAKISDINEVITDE 236
>gb|AAT50505.1| PA3583 [synthetic construct]
Length = 252
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 5/248 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + II+ V ++ + + +++ V+ TIR+D+++L +GLLRR HG A +S +
Sbjct: 6 RQQSIIEEVRERGYLSIEEMAQMFAVTPQTIRRDINQLAEQGLLRRYHGGAAYDSSIENT 65
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
+R + K+RIAE A LV DN ++ I G+T +A L RN+K ITN+
Sbjct: 66 AYTMRADQMRDEKQRIAEAVASLVPDNASLFINIGTTTEAIARALL-NHRNLKTITNNLH 124
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A + ++++ GG + + + VG + I F V+ VG G ++D +
Sbjct: 125 VAATLSAKEDFEVLVAGGTVRSDGGI-VGQAAVDFIQQFRVDFALVGISGIDEDGSLLDF 183
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + + D A +V + DSSKF + ++V ++ VNRVI+D L++
Sbjct: 184 DYQEVRVSQAIIDNARQVFLAADSSKFGRNAVVRLGPISLVNRVISDSPPPAAIARLMAQ 243
Query: 240 SGLVLDFV 247
+ LD V
Sbjct: 244 HKVHLDLV 251
>ref|ZP_02372786.1| glycerol-3-phosphate regulon repressor [Burkholderia thailandensis
TXDOH]
ref|ZP_02386617.1| glycerol-3-phosphate regulon repressor [Burkholderia thailandensis
Bt4]
Length = 259
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 4/242 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + +++ V + + V+ L+ +V+ TIR+D++ L LLRR HG A L + +
Sbjct: 12 RQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENV 71
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R ++ KRRIA AA + D ++ I G+T +A L + R ++VITN+
Sbjct: 72 SYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNR-HRGLRVITNNLN 130
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A+ + Y C++++ GG +P + VG L + I F V+ +GT D
Sbjct: 131 VASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDF 190
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + A V ++TD SKF + +LV Q L ++ + TD+ L + E ++
Sbjct: 191 DTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLNQIHALFTDKPLPDEMAETIAQ 250
Query: 240 SG 241
+G
Sbjct: 251 AG 252
>ref|NP_242419.1| transcriptional regulator (DeoR family) [Bacillus halodurans C-125]
dbj|BAB05272.1| transcriptional regulator (DeoR family) [Bacillus halodurans C-125]
Length = 251
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 5/227 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E+II LV++K + V+ LS+ +V++ TIR+DL+KLES+ L+R HG AV D
Sbjct: 6 RHEKIIALVTEKGSVRVSELSQLFNVTEETIRRDLEKLESERKLQRSHGGAVSIKEDTEA 65
Query: 63 V---RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R N N K+ +A +A V ND I++++ +T +A+ L + V+TNS
Sbjct: 66 PYFEREIRNVNEKQAVAAQAVTYVTTNDRIILDASTTAWYMAKRLPDVP--LTVLTNSMK 123
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A + + +I +GG S VGP + + L+HVN+ F+ G + G
Sbjct: 124 VAMELAKREKITVITVGGTLLRKSLSFVGPQTNQTLELYHVNKAFISCQGVHAKRGISDS 183
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITD 226
+ M++ + M D ++ V +L D +KF K + S+ ++ +ITD
Sbjct: 184 NEMQALVKQKMIDISDHVFLLADHTKFGKQAFSRITSMETIDTIITD 230
>ref|YP_610929.1| transcriptional repressor, DeoR family [Pseudomonas entomophila
L48]
emb|CAK18146.1| putative transcriptional repressor, DeoR family [Pseudomonas
entomophila L48]
Length = 258
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 134/253 (52%), Gaps = 21/253 (8%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDL 61
R I+ L+S++ ++ V++L+++ + S+VTIRKDL LES GLL R +G AV + L
Sbjct: 8 QRRRNILALLSEQGEVSVDALAKRFETSEVTIRKDLAALESHGLLLRRYGGAVPVPQEML 67
Query: 62 NVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIA 121
K+ IA A ++++ I+I+SGST A + L + + + V+TNS +A
Sbjct: 68 GEPAQPVSVYKKAIARAAVGRIREHARIIIDSGSTTAAMIPELGR-QPGLVVMTNSLNVA 126
Query: 122 NYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG---------FN 171
I + ++L+ GG + P+SE G + ++++ + +++F+G DG FN
Sbjct: 127 RAISELEHEPVLLMTGGTWDPHSESFQGQVAEQVLRSYDFDQLFIGADGIDLNRGTTTFN 186
Query: 172 KDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDK 231
+ LG R MA+ A EV+++ +S K + +L V+ +ITD+ L
Sbjct: 187 ELLGLS----------RVMAEVAREVIVMVESDKVGRKIPNLELPWGSVHTLITDERLPA 236
Query: 232 QTQELLSASGLVL 244
+E + A G+ L
Sbjct: 237 AAREHIQARGINL 249
>ref|ZP_02327036.1| DeoR-family transcriptional regulator [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 265
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 6/231 (2%)
Query: 16 KIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN-VRLSYNYNI--- 71
+I V + E + S+ T R+DLD LE +G L R G A+ + + + N
Sbjct: 25 RITVQEIIETMGCSEATARRDLDVLERQGELVRTIGGALFEGPSPMKEIPFAEKKNQLWF 84
Query: 72 -KRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSC 130
K IA+KAAEL+++ D+I + G+T L+A+ + + ++ I V+TN+ IA + +
Sbjct: 85 EKEAIAKKAAELIEEGDSICLSGGTTTYLIAKEI-KKRQGITVVTNAVNIAMELADSEAL 143
Query: 131 QIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRYM 190
Q++++GG + N+ GPL ++ I ++ ++F+G DG D G + + R M
Sbjct: 144 QVVVIGGVMRSNTFELSGPLAEKTIEHLNIRKLFLGIDGLRIDKGITTYSELEAATARMM 203
Query: 191 ADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASG 241
AE+ + + D SK K SL L +++ ITD+ALD +T L G
Sbjct: 204 MKRAEQTLAVFDHSKVGKASLFSIAGLQELSACITDRALDPETDRQLHHFG 254
>ref|YP_001783909.1| transcriptional regulator, DeoR family [Haemophilus somnus 2336]
gb|ACA32219.1| transcriptional regulator, DeoR family [Haemophilus somnus 2336]
Length = 260
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 131/242 (54%), Gaps = 30/242 (12%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R + I+QL+ K +I V L + + S+VTIRKDL LES G L R++G AVL L
Sbjct: 13 RRQVIMQLLQDKGEISVEQLVQYFNTSEVTIRKDLSALESTGFLLRKYGGAVL----ILQ 68
Query: 63 VRLSYNY-----NIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
L N+ N K IA+ AAE + DN+ I+I+SGST A L + L K+ + V+TNS
Sbjct: 69 EPLEANHEELLSNRKLAIAKAAAERIADNNRIIIDSGSTTAALIKQL-NNKQGLVVMTNS 127
Query: 118 CFIANYIRQYSSCQIILL-GGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG------- 169
+AN +R +L+ GG + SE G + ++++ ++ +++F+G DG
Sbjct: 128 LSVANQLRSLEYAPTLLMTGGTWDTGSESFQGKVAEQVLYSYNFDQLFIGADGIDLARGT 187
Query: 170 --FNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQ 227
FN+ +G + MA+ A+EV+++ +S K + +L+ ++ +ITD+
Sbjct: 188 TTFNELVGLS----------QVMAEVAQEVIVMVESQKIGRKMPNLELTWQQIDVLITDE 237
Query: 228 AL 229
L
Sbjct: 238 LL 239
>ref|YP_949050.1| putative transcriptional regulator, DeoR family [Arthrobacter
aurescens TC1]
gb|ABM09453.1| putative transcriptional regulator, DeoR family [Arthrobacter
aurescens TC1]
Length = 262
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 16/249 (6%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R II V +++ + V+ L++ L VS +T+R+D++ LE G + R HG A L GD
Sbjct: 6 RHSAIIDAVQRERVVRVSDLAQLLGVSPMTVRRDIEALEEAGRVERIHGGAKL-PGDAST 64
Query: 63 VRLSYNYNIKRRIAEK------AAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ + AEK AA LVQ+ I + +G+T LA+ L R I V+TN
Sbjct: 65 HEPGFELKSTQLTAEKHAIAVEAASLVQEGMAIGLGAGTTTWALAKELVNGPR-ITVVTN 123
Query: 117 SCFIANYIRQYSSC-------QIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG 169
S IA+ SS +IL+GG P S+ VGP+ + H++ +F+G G
Sbjct: 124 SVRIADLFHHGSSSGPARFGSTVILIGGERTP-SDALVGPIATSSLKQLHLDVLFLGVHG 182
Query: 170 FNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ GF +++ +E R +A VIL D SK+ + L +V+ +ITD L
Sbjct: 183 MDAHAGFTTPNLLEAETNRAFMSSARSTVILADHSKWGVVGIASITRLEEVDELITDSLL 242
Query: 230 DKQTQELLS 238
+ + +L+
Sbjct: 243 GEDARRVLA 251
>ref|YP_001179795.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|ABP66604.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 253
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 138/233 (59%), Gaps = 5/233 (2%)
Query: 1 MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD 60
+ R ++I+ ++++ K + V L++ +V++ TIR+DL+KLE +GLL+R +G AVL +
Sbjct: 4 IERRQKIMAMLNENKSVLVPELAKLFNVTEETIRRDLEKLEKEGLLKRTYGGAVLVENYN 63
Query: 61 LNVRLSY----NYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+++ + N K++IA + ++D DT++++S ST AL L +TK+ I VITN
Sbjct: 64 VDIPFEFRNVTNIEGKKQIALTLIKYIEDGDTLVMDS-STSALQVAKLLKTKKKITVITN 122
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S I N ++ + ++I GG + S VGP+ + + + N+ + GF+ + GF
Sbjct: 123 SEQIVNELKVFEDIKVISTGGTLRNRSLSLVGPIAENTLKSLNANKAIISCKGFDIEKGF 182
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ + ++ + M + A+++ ++ D +K +K +LV+ +L DV+ + TD+ L
Sbjct: 183 TESNELEAQVKKMMIEIADQIYMIVDHTKMNKIALVNIATLDDVDFIFTDKVL 235
>ref|ZP_01967255.1| hypothetical protein RUMTOR_00801 [Ruminococcus torques ATCC 27756]
gb|EDK24999.1| hypothetical protein RUMTOR_00801 [Ruminococcus torques ATCC 27756]
Length = 287
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
RL I Q + +KK V LS+ V++ TIR+DLDKLE+ G++ R HG A+ N G
Sbjct: 41 RLMAIRQTIQMQKKASVGELSKICRVTEETIRRDLDKLEADGVVTRVHGGAIWNEGIQKE 100
Query: 61 ---LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
R+S + K+ IA K A+L + T++ +S +T ++L Q+ +I V+TNS
Sbjct: 101 GVHFYRRMSKHLKEKQEIARKTAKLFEGKTTMIADSSTTVMEALKLLPQSP-DITVVTNS 159
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+ +Q S II GG Y S G L K I ++V+ + G + + G +
Sbjct: 160 TEVFREFQQ-SPLNIISTGGEYNKKSLSLQGQLAKTNILKYNVSLALISCKGLSIEKGVL 218
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELL 237
+ +E + M AEEV +L D SKF +++ V+ + L VN +ITD++ ++ E
Sbjct: 219 DSNESEAEVKKAMLSQAEEVALLVDFSKFDQSAFVNLIDLQKVNYIITDRSPSEKWIEYC 278
Query: 238 SASGLVLDF 246
S G+ L +
Sbjct: 279 SEQGIELIY 287
>ref|YP_441160.1| glycerol-3-phosphate regulon repressor [Burkholderia thailandensis
E264]
gb|ABC37231.1| glycerol-3-phosphate regulon repressor [Burkholderia thailandensis
E264]
Length = 278
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 4/242 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + +++ V + + V+ L+ +V+ TIR+D++ L LLRR HG A L + +
Sbjct: 31 RQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENV 90
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R ++ KRRIA AA + D ++ I G+T +A L + R ++VITN+
Sbjct: 91 SYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNR-HRGLRVITNNLN 149
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A+ + Y C++++ GG +P + VG L + I F V+ +GT D
Sbjct: 150 VASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDF 209
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + A V ++TD SKF + +LV Q L ++ + TD+ L + E ++
Sbjct: 210 DTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLNQIHALFTDKPLPDEMAETIAQ 269
Query: 240 SG 241
+G
Sbjct: 270 AG 271
>ref|ZP_02462409.1| glycerol-3-phosphate regulon repressor [Burkholderia thailandensis
MSMB43]
Length = 259
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 4/242 (1%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R + +++ V + + V+ L+ +V+ TIR+D++ L LLRR HG A L + +
Sbjct: 12 RQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENV 71
Query: 61 -LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCF 119
R ++ KRRIA AA + D ++ I G+T +A L + R ++VITN+
Sbjct: 72 SYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNR-HRGLRVITNNLN 130
Query: 120 IANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGK 179
+A+ + Y C++++ GG +P + VG L + I F V+ +GT D
Sbjct: 131 VASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFKVDYAIIGTSSIESDGTLRDF 190
Query: 180 DMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSA 239
D + A V ++TD SKF + +LV Q L+ V+ + TD+ L E ++
Sbjct: 191 DTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLSQVHALFTDKPLPDVMAETIAQ 250
Query: 240 SG 241
+G
Sbjct: 251 AG 252
>ref|YP_536841.1| Transcriptional regulator, DeoR family [Lactobacillus salivarius
UCC118]
gb|ABE00758.1| Transcriptional regulator, DeoR family [Lactobacillus salivarius
UCC118]
Length = 251
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 1 MNRLER---IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNS 57
MN LER I+ L+ +K + + +S L +S+ TIRKD+ LE KG L G A +
Sbjct: 1 MNTLERQEFILNLLKKKDVVKTSEISSTLKISRETIRKDIYTLEKKGKLLAVRGGA---T 57
Query: 58 GDDLNV-------RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTK-R 109
D N+ R S N K+ IA A + ++D DTI +++G+T LA+ + +
Sbjct: 58 TLDQNITETRYRQRTSENIQEKKYIANLALKFIKDGDTIFLDNGTTIVELAKKINSSNLN 117
Query: 110 NIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDG 169
NI VIT+S + + R QIILLGG + + GP+ E I + N +F G G
Sbjct: 118 NITVITDSINVLDVFRYNEKFQIILLGGGLRHSESSLSGPIALENIRNLYCNIIFCGCGG 177
Query: 170 FNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQAL 229
+ +G E + M + +V++L D SKF K +L +++++ +ITD+ +
Sbjct: 178 ISSKIGITNHYFSEVEVTKKMIRHSSKVIVLADHSKFEKNALYKTADISEIDTIITDKNI 237
Query: 230 DKQT 233
D++T
Sbjct: 238 DEET 241
>ref|NP_626163.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
emb|CAB46398.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)]
Length = 258
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 5/228 (2%)
Query: 7 IIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHG--YAVLNSG--DDLN 62
I+++ +DV +L+ +L V+K T+R+DL LE GL+RR HG Y V ++G L
Sbjct: 15 IVRVARATGSVDVTALAAELGVAKETVRRDLRALEDHGLVRRTHGGAYPVESAGFETTLA 74
Query: 63 VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIAN 122
R + + KRRIA A EL+ D +T+ ++ G T L+AE L + R + V+T S +A
Sbjct: 75 FRATSHVPEKRRIASAAVELLGDAETVFVDEGFTPQLIAEALPR-DRPLTVVTASLPVAG 133
Query: 123 YIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMM 182
+ + ++LLGG + + TV +M++ F ++ ++G +G +++ G D
Sbjct: 134 ALAEAGDTSVLLLGGRVRSGTLATVDHWTTKMLAGFVIDLAYIGANGISREHGLTTPDPA 193
Query: 183 RSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALD 230
SE AA V +KF S + + ++T L
Sbjct: 194 VSEVKAQAVRAARRTVFAGAHTKFGAVSFCRFAEVGALEAIVTSTLLP 241
>ref|ZP_02686955.1| hypothetical protein LmonFSL_01237 [Listeria monocytogenes FSL
J2-071]
Length = 254
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD-- 60
R +II L+ Q KI V LS LDVS TIR DL LE G++++ HG AVL ++
Sbjct: 6 RQNKIIHLLDQNNKITVPELSRILDVSISTIRNDLSALEESGMIKKVHGGAVLLKSEEKF 65
Query: 61 --LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSC 118
N R+ N K IA++AA LV++N TI++++ ST LA+ L R + VIT+
Sbjct: 66 TNFNDRIIRNIEEKEAIAKEAATLVKNNQTIILDASSTALALAKELHGFSR-LTVITSGL 124
Query: 119 FIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMG 178
+ A ++ + +IL GG NS G L +I H + F+ GF + G
Sbjct: 125 YTAIELKDNPNISVILTGGIVTTNSFTLEGILGANLIENIHADLCFMSAKGFTMEEGLTD 184
Query: 179 KDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLS 238
++ +E R +A ++V L D +K S S +++ +ITD ++K +
Sbjct: 185 FNIYETELKRLLAKRTNKLVALLDHTKMGVISTASITSAENIDLLITDNKINKALYKKFQ 244
Query: 239 ASGL 242
+GL
Sbjct: 245 DAGL 248
>ref|ZP_02826078.1| transcriptional regulator, DeoR family protein [Escherichia coli
O157:H7 str. EC508]
Length = 252
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 130/232 (56%), Gaps = 7/232 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG--- 58
+R++ I Q+V+ KK+ V++LS V+K TIR+DL+KLE +G L R +G AVLN+
Sbjct: 5 DRIQAIKQMVANDKKVTVSNLSGIFQVTKETIRRDLEKLEDEGFLTRTYGGAVLNTAMLT 64
Query: 59 DDLNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
++++ R S Y K+ IA KA + + T+ +S ST L ++L Q + ++ ++TN
Sbjct: 65 ENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLL-QDRSDLTLLTN 123
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S + + Q S +++ GG N+ G + KE+IS +HV+ + + G + + G
Sbjct: 124 SAEAIHVLAQ-SEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINSGA 182
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQA 228
+ + +E + M A EV +L D SKF + + V + +N +ITD++
Sbjct: 183 LDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKS 234
>ref|YP_001511311.1| transcriptional regulator, DeoR family [Frankia sp. EAN1pec]
gb|ABW16405.1| transcriptional regulator, DeoR family [Frankia sp. EAN1pec]
Length = 253
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAV----LNS 57
R + I++ + ++DV +L+E V+ TIR+DL LE G+LRR HG A+ +
Sbjct: 5 ERQQEIVRRARAEGRVDVVALAEGFGVTSETIRRDLTLLERAGVLRRVHGGAIPIERMGF 64
Query: 58 GDDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
L R + K RI + A + + +++I++GST LAE L R + V+ N+
Sbjct: 65 EPALAARDAVMTAEKERIVKAAVAELPEEGSVIIDAGSTTGRLAEAL-PADRELTVVVNA 123
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFM 177
+A + + +I+LGG + + TV + +S V+ F+GT+G + D GF
Sbjct: 124 PPLATMLAGRPNLHVIMLGGRVRARTLATVDDWALQPLSHLSVDVAFMGTNGCSPDRGFT 183
Query: 178 GKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQ 232
D + R M +A V+L D +K L +LA+V+ ITD LD +
Sbjct: 184 TPDPAEAAVKRAMIASARRAVVLADHTKVGNDYLARFATLAEVDMFITDTGLDAR 238
>ref|YP_176713.1| transcriptional regulator of sugar metabolism [Bacillus clausii
KSM-K16]
dbj|BAD65752.1| transcriptional regulator of sugar metabolism [Bacillus clausii
KSM-K16]
Length = 252
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 5/233 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
RL+RI++++ Q I V + ++L V+ +T+R+DL LE GLL R HG A + +
Sbjct: 6 RLQRIVKMLEQSDMIKVADIMKELQVADMTVRRDLQALEEAGLLVRLHGGATKAGYKERS 65
Query: 63 --VRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI 120
+ S N K+ IA++AA L+ D+DT+ + G+T + + R++K++T S I
Sbjct: 66 NTEKQSLNQKEKKAIAKQAASLIHDHDTVFLGPGTTNESMHGYI--QARDVKIVTTSLPI 123
Query: 121 ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD 180
+ +++L GG Y+ + +G L ++++ N+ F+GT+G + +
Sbjct: 124 FMKFKGDPRFELLLAGGEYRERTGSFIGALARQLLGALRFNKAFIGTNGIHGS-EVTAAN 182
Query: 181 MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQT 233
EG R + E++ I D SKF ++ L + VITD LDK T
Sbjct: 183 EEEGEGHRIICHRTEQLYITADHSKFGVSAFYTFCHLQETTAVITDSMLDKNT 235
>ref|ZP_02900487.1| transcriptional regulator, DeoR family [Escherichia albertii
TW07627]
gb|EDS93753.1| transcriptional regulator, DeoR family [Escherichia albertii
TW07627]
Length = 269
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 132/246 (53%), Gaps = 7/246 (2%)
Query: 3 RLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLN 62
R E+IIQ + Q+ + VN LS VS VTIR DL LE +G+ R +G A++ + +
Sbjct: 18 RREQIIQRLRQQGSVQVNDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSNTPS 77
Query: 63 VRLS------YNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
+ S N +KR +A+ A EL+Q I+++SG+T +A L + ++ +TN
Sbjct: 78 LEPSVEDKSALNIAMKRSVAKAAVELIQPGHRIILDSGTTTFEIAR-LMRKHTDVIAMTN 136
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
+AN + + ++++ GG+ + S+ G ++ + +H + +F+G D + + G
Sbjct: 137 GMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGV 196
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
+ + R M + AE ++++TDSSKF+++SL + ++ +I D+ + + E
Sbjct: 197 STHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEG 256
Query: 237 LSASGL 242
L +G+
Sbjct: 257 LRKAGI 262
>ref|ZP_01161108.1| Transcriptional regulator of sugar metabolism [Photobacterium sp.
SKA34]
gb|EAR55141.1| Transcriptional regulator of sugar metabolism [Photobacterium sp.
SKA34]
Length = 221
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 13/220 (5%)
Query: 31 VTIRKDLDKLESKGLLRREHGYAVLNS--------GDDLNVRLSYNYNIKRRIAEKAAEL 82
+TIR DL++LE KG L R +G A LN G+ ++ IK ++ E AA
Sbjct: 1 MTIRNDLNRLERKGCLTRCYGGARLNRQFAFERPFGEKKQIQCK----IKAKLGEYAASF 56
Query: 83 VQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPN 142
+ + D I+++SGST +A L K ++ V+TN IA ++ ++ ++L GG + N
Sbjct: 57 INNGDKIILDSGSTLEQVALNL-DDKNDLVVMTNGINIAYHLANKNNLSVMLTGGLMRSN 115
Query: 143 SEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTD 202
S G + +E++S +H N F+G DGF+K LG + R M +AA+ V+ +TD
Sbjct: 116 SYSVFGSIGEELLSEYHYNTFFLGVDGFDKSLGITTPHQAEANINRKMIEAAQNVIAVTD 175
Query: 203 SSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSASGL 242
SSKF++ S +N +ITD + + L+ G+
Sbjct: 176 SSKFNRQSFCMIAHPKQLNMLITDSGIPQDYYNELTTQGI 215
>ref|NP_700036.1| transcriptional regulator, DeoR family [Brucella suis 1330]
ref|YP_223156.1| transcriptional regulator, DeoR family [Brucella abortus biovar 1
str. 9-941]
ref|YP_418575.1| Bacterial regulatory protein, DeoR family [Brucella melitensis
biovar Abortus 2308]
ref|YP_001257799.1| transcriptional regulator, DeoR family [Brucella ovis ATCC 25840]
ref|YP_001594808.1| transcriptional regulator, DeoR family [Brucella canis ATCC 23365]
ref|YP_001622642.1| hypothetical protein BSUIS_B0861 [Brucella suis ATCC 23445]
gb|AAD11523.1| unknown [Brucella melitensis biovar Abortus]
gb|AAN34041.1| transcriptional regulator, DeoR family [Brucella suis 1330]
gb|AAX75795.1| transcriptional regulator, DeoR family [Brucella abortus biovar 1
str. 9-941]
emb|CAJ12534.1| Bacterial regulatory protein, DeoR family [Brucella melitensis
biovar Abortus 2308]
gb|ABQ62363.1| transcriptional regulator, DeoR family [Brucella ovis ATCC 25840]
gb|ABX64037.1| transcriptional regulator, DeoR family [Brucella canis ATCC 23365]
gb|ABY39820.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 254
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 8/248 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG--- 58
+R + II L+ + + +D++ L+ + VSK+TI +DLD LE G+LR+ G A +++G
Sbjct: 5 DRRQAIINLLIENQAVDLDDLAGRFAVSKMTIHRDLDSLEQSGVLRKVRGGATIDAGTQF 64
Query: 59 -DDLNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNS 117
D R + K ++A A ELV+ T+M+ GS ALL +L + KR + VITN+
Sbjct: 65 ESDFRFRERQDGEAKLKMARAALELVEPGMTVMVNDGSMAALLGGML-REKRPLTVITNN 123
Query: 118 CFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF- 176
I + ++ + +I LGG Y G L +E ++ + FV + N L +
Sbjct: 124 AVIIDELKGENGINLIALGGTYSAKFNAFFGILTEEALARLSADIAFVSSPAVNGQLVYH 183
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQEL 236
M ++++R++ R M +AA +L + +F + +L L D + +ITD +
Sbjct: 184 MDENVVRTK--RAMTNAAARSCLLVNHQRFGRPALHVMADLTDFDAIITDASPGTAVLNG 241
Query: 237 LSASGLVL 244
L +G+ L
Sbjct: 242 LKQAGIKL 249
>ref|YP_001724837.1| transcriptional regulator, DeoR family [Escherichia coli ATCC 8739]
gb|ACA77510.1| transcriptional regulator, DeoR family [Escherichia coli ATCC 8739]
Length = 252
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 131/232 (56%), Gaps = 7/232 (3%)
Query: 2 NRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSG--- 58
+R++ I Q+V+ KK+ V++LS V++ TIR+DL+KLE +G L R +G AVLN+
Sbjct: 5 DRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLT 64
Query: 59 DDLNV--RLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITN 116
++++ R S Y K+ IA KA + + T+ +S ST L ++L Q + ++ ++TN
Sbjct: 65 ENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLL-QDRSDLTLLTN 123
Query: 117 SCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGF 176
S + + Q S +++ GG N+ G + KE+IS +HV+ + + G + + G
Sbjct: 124 SAEAIHVLAQ-SEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINSGA 182
Query: 177 MGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQA 228
+ + +E + M A EVV+L D SKF + + V + +N +ITD++
Sbjct: 183 LDSNEAEAEIKKTMIRQATEVVLLVDHSKFDRKAFVQLADFSHINYIITDKS 234
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.318 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 917,212,052
Number of extensions: 34718555
Number of successful extensions: 114621
Number of sequences better than 10.0: 2029
Number of HSP's gapped: 112819
Number of HSP's successfully gapped: 2029
Length of query: 248
Length of database: 2,222,278,849
Length adjustment: 130
Effective length of query: 118
Effective length of database: 1,375,315,329
Effective search space: 162287208822
Effective search space used: 162287208822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)