Kingdom | Category | Genus/Species | Count |
---|---|---|---|
  |   | 53 | |
Archaea |   |   | 17 |
  |   | 53 | |
  | Crenarchaeota |   | 4 |
  |   | Aeropyrum pernix (ape) | 1 |
  |   | Ignicoccus hospitalis (iho) | 1 |
  |   | Pyrobaculum aerophilum (pai) | 1 |
  |   | Thermofilum pendens (tpe) | 1 |
  | Euryarchaeota |   | 13 |
  |   | Methanosarcina acetivorans (mac) | 3 |
  |   | Methanosarcina barkeri (mba) | 2 |
  |   | Candidatus Methanoregula boonei (mbn) | 1 |
  |   | Methanoculleus marisnigri (mem) | 1 |
  |   | Methanopyrus kandleri (mka) | 1 |
  |   | Methanosarcina mazei (mma) | 2 |
  |   | Methanosphaera stadtmanae (mst) | 1 |
  |   | Natronomonas pharaonis (nph) | 1 |
  |   | Thermoplasma acidophilum (tac) | 1 |
Bacteria |   |   | 4580 |
  | Acidobacteria |   | 14 |
  |   | Acidobacteria bacterium (aba) | 3 |
  |   | Solibacter usitatus (sus) | 11 |
  | Actinobacteria |   | 30 |
  |   | Arthrobacter aurescens (aau) | 1 |
  |   | Acidothermus cellulolyticus (ace) | 1 |
  |   | Clavibacter michiganensis (cmi) | 2 |
  |   | Frankia alni (fal) | 2 |
  |   | Frankia sp. CcI3 (fra) | 1 |
  |   | Frankia sp. EAN1pec (fre) | 2 |
  |   | Mycobacterium bovis BCG Pasteur 1173P2 (mbb) | 1 |
  |   | Mycobacterium gilvum (mgi) | 1 |
  |   | Mycobacterium sp. JLS (mjl) | 2 |
  |   | Mycobacterium smegmatis (msm) | 2 |
  |   | Nocardioides sp. JS614 (nca) | 1 |
  |   | Nocardia farcinica (nfa) | 1 |
  |   | Rhodococcus sp. RHA1 (rha) | 2 |
  |   | Rubrobacter xylanophilus (rxy) | 3 |
  |   | Streptomyces coelicolor (sco) | 3 |
  |   | Saccharopolyspora erythraea (sen) | 3 |
  |   | Streptomyces avermitilis (sma) | 2 |
  | Bacteroides |   | 9 |
  |   | Cytophaga hutchinsonii (chu) | 1 |
  |   | Flavobacterium johnsoniae (fjo) | 3 |
  |   | Flavobacterium psychrophilum (fps) | 3 |
  |   | Gramella forsetii (gfo) | 2 |
  | Cyanobacteria |   | 24 |
  |   | Acaryochloris marina (amr) | 3 |
  |   | Anabaena sp. PCC7120 (ana) | 3 |
  |   | Anabaena variabilis (ava) | 6 |
  |   | Cyanobacteria Yellowstone A-Prime (cya) | 1 |
  |   | Cyanobacteria Yellowstone B-Prime (cyb) | 1 |
  |   | Gloeobacter violaceus (gvi) | 4 |
  |   | Prochlorococcus marinus MIT 9303 (pmf) | 1 |
  |   | Prochlorococcus marinus MIT9313 (pmt) | 1 |
  |   | Synechococcus sp. CC9605 (syd) | 1 |
  |   | Synechocystis sp. PCC6803 (syn) | 1 |
  |   | Trichodesmium erythraeum (ter) | 2 |
  | Deinococcus-Thermus |   | 4 |
  |   | Deinococcus geothermalis (dge) | 3 |
  |   | Thermus thermophilus HB8 (ttj) | 1 |
  | Firmicutes |   | 17 |
  |   | Alkaliphilus metalliredigens (amt) | 1 |
  |   | Bacillus anthracis A2012 (baa) | 1 |
  |   | Bacillus amyloliquefaciens (bay) | 2 |
  |   | Bacillus cereus ATCC 10987 (bca) | 1 |
  |   | Bacillus clausii (bcl) | 1 |
  |   | Clostridium beijerinckii (cbe) | 1 |
  |   | Clostridium difficile (cdf) | 1 |
  |   | Clostridium kluyveri (ckl) | 2 |
  |   | Geobacillus thermodenitrificans (gtn) | 1 |
  |   | Pelotomaculum thermopropionicum (pth) | 2 |
  |   | Symbiobacterium thermophilum (sth) | 2 |
  |   | Syntrophomonas wolfei (swo) | 2 |
  | Green nonsulfur bacteria |   | 6 |
  |   | Herpetosiphon aurantiacus (hau) | 1 |
  |   | Roseiflexus castenholzii DSM13941 (rca) | 4 |
  |   | Roseiflexus sp. RS-1 (rrs) | 1 |
  | Green sulfur bacteria |   | 6 |
  |   | Chlorobium chlorochromatii (cch) | 3 |
  |   | Chlorobium phaeobacteroides (cph) | 1 |
  |   | Chlorobaculum tepidum (cte) | 1 |
  |   | Pelodictyon luteolum (plt) | 1 |
  | Hyperthermophilic bacteria |   | 1 |
  |   | Thermotoga lettingae (tle) | 1 |
  | Planctomyces |   | 1 |
  |   | Rhodopirellula baltica (rba) | 1 |
  | Proteobacteria |   | 4467 |
  |   | Acidovorax avenae (aav) | 2 |
  |   | Alcanivorax borkumensis (abo) | 1 |
  |   | Acinetobacter baumannii (acb) | 1 |
  |   | Acidiphilium cryptum JF-5 (acr) | 7 |
  |   | Anaeromyxobacter dehalogenans (ade) | 5 |
  |   | Alkalilimnicola ehrlichei (aeh) | 1 |
  |   | Anaeromyxobacter sp. Fw109-5 (afw) | 1 |
  |   | Acidovorax sp. JS42 (ajs) | 3 |
  |   | Actinobacillus succinogenes (asu) | 1 |
  |   | Agrobacterium tumefaciens C58 (Cereon) (atc) | 22 |
  |   | Azorhizobium caulinodans (azc) | 82 |
  |   | Azoarcus sp. BH72 (azo) | 9 |
  |   | Burkholderia cepacia (bam) | 6 |
  |   | Bordetella bronchiseptica (bbr) | 6 |
  |   | Bradyrhizobium sp. BTAi1 (bbt) | 731 |
  |   | Burkholderia cenocepacia HI2424 (bch) | 4 |
  |   | Bartonella henselae (bhe) | 2 |
  |   | Bradyrhizobium japonicum (bja) | 1219 |
  |   | Brucella abortus (bmb) | 3 |
  |   | Brucella melitensis biovar Abortus (bmf) | 1 |
  |   | Burkholderia mallei NCTC 10247 (bmn) | 1 |
  |   | Brucella suis (bms) | 3 |
  |   | Brucella ovis (bov) | 5 |
  |   | Bordetella parapertussis (bpa) | 1 |
  |   | Burkholderia pseudomallei 668 (bpd) | 1 |
  |   | Burkholderia pseudomallei 1710b (bpm) | 1 |
  |   | Burkholderia pseudomallei K96243 (bps) | 1 |
  |   | Bradyrhizobium sp. ORS278 (bra) | 563 |
  |   | Burkholderia thailandensis (bte) | 8 |
  |   | Burkholderia sp. 383 (bur) | 11 |
  |   | Burkholderia vietnamiensis (bvi) | 7 |
  |   | Burkholderia xenovorans (bxe) | 11 |
  |   | Coxiella burnetii Dugway 7E9-12 (cbd) | 4 |
  |   | Coxiella burnetii RSA 493 (cbu) | 1 |
  |   | Caulobacter crescentus (ccr) | 13 |
  |   | Campylobacter fetus (cff) | 1 |
  |   | Chromohalobacter salexigens (csa) | 1 |
  |   | Chromobacterium violaceum (cvi) | 3 |
  |   | Delftia acidovorans (dac) | 12 |
  |   | Dechloromonas aromatica (dar) | 12 |
  |   | Candidatus Desulfococcus oleovorans (dol) | 2 |
  |   | Dinoroseobacter shibae (dsh) | 2 |
  |   | Desulfovibrio vulgaris DP4 (dvl) | 2 |
  |   | Desulfovibrio vulgaris Hildenborough (dvu) | 1 |
  |   | Azoarcus sp. EbN1 (eba) | 12 |
  |   | Erwinia carotovora (eca) | 3 |
  |   | Escherichia coli UTI89 (UPEC) (eci) | 1 |
  |   | Escherichia coli O157 Sakai (EHEC) (ecs) | 1 |
  |   | Enterobacter sp. 638 (ent) | 1 |
  |   | Enterobacter sakazakii (esa) | 4 |
  |   | Francisella tularensis subsp. novicida U112 (ftn) | 1 |
  |   | Granulobacter bethesdensis (gbe) | 10 |
  |   | Geobacter metallireducens (gme) | 2 |
  |   | Gluconobacter oxydans (gox) | 4 |
  |   | Geobacter sulfurreducens (gsu) | 1 |
  |   | Geobacter uraniumreducens (gur) | 4 |
  |   | Herminiimonas arsenicoxydans (har) | 2 |
  |   | Hahella chejuensis (hch) | 3 |
  |   | Halorhodospira halophila (hha) | 15 |
  |   | Hyphomonas neptunium (hne) | 5 |
  |   | Jannaschia sp. CCS1 (jan) | 8 |
  |   | Klebsiella pneumoniae (kpn) | 1 |
  |   | Magnetospirillum magneticum (mag) | 36 |
  |   | Marinobacter aquaeolei (maq) | 5 |
  |   | Methylococcus capsulatus (mca) | 9 |
  |   | Mesorhizobium sp. BNC1 (mes) | 21 |
  |   | Methylobacillus flagellatus (mfa) | 3 |
  |   | Magnetococcus sp. MC-1 (mgm) | 1 |
  |   | Mesorhizobium loti (mlo) | 40 |
  |   | Maricaulis maris (mmr) | 1 |
  |   | Minibacterium massiliensis (mms) | 18 |
  |   | Methylibium petroleiphilum (mpt) | 8 |
  |   | Mannheimia succiniciproducens (msu) | 1 |
  |   | Myxococcus xanthus (mxa) | 4 |
  |   | Novosphingobium aromaticivorans (nar) | 7 |
  |   | Nitrosomonas europaea (neu) | 1 |
  |   | Neisseria gonorrhoeae (ngo) | 1 |
  |   | Nitrobacter hamburgensis (nha) | 667 |
  |   | Nitrosospira multiformis (nmu) | 4 |
  |   | Nitrosococcus oceani (noc) | 5 |
  |   | Nitrobacter winogradskyi (nwi) | 208 |
  |   | Ochrobactrum anthropi (oan) | 20 |
  |   | Pseudomonas aeruginosa PAO1 (pae) | 2 |
  |   | Pseudomonas aeruginosa PA7 (pap) | 8 |
  |   | Pseudoalteromonas atlantica (pat) | 1 |
  |   | Pseudomonas aeruginosa UCBPP-PA14 (pau) | 8 |
  |   | Pelobacter carbinolicus (pca) | 1 |
  |   | Paracoccus denitrificans (pde) | 24 |
  |   | Pseudomonas entomophila (pen) | 6 |
  |   | Pseudomonas fluorescens Pf-5 (pfl) | 7 |
  |   | Pseudomonas fluorescens PfO-1 (pfo) | 2 |
  |   | Psychromonas ingrahamii (pin) | 2 |
  |   | Parvibaculum lavamentivorans (pla) | 24 |
  |   | Photorhabdus luminescens (plu) | 1 |
  |   | Pasteurella multocida (pmu) | 1 |
  |   | Pseudomonas mendocina (pmy) | 2 |
  |   | Polaromonas naphthalenivorans (pna) | 9 |
  |   | Polynucleobacter sp. QLW-P1DMWA-1 (pnu) | 4 |
  |   | Polaromonas sp. JS666 (pol) | 4 |
  |   | Pelobacter propionicus (ppd) | 2 |
  |   | Pseudomonas putida F1 (ppf) | 3 |
  |   | Pseudomonas putida KT2440 (ppu) | 1 |
  |   | Pseudomonas stutzeri (psa) | 4 |
  |   | Pseudomonas syringae pv. syringae B728a (psb) | 4 |
  |   | Pseudomonas syringae pv. phaseolicola 1448A (psp) | 2 |
  |   | Pseudomonas syringae pv. tomato DC3000 (pst) | 4 |
  |   | Candidatus Pelagibacter ubique (pub) | 1 |
  |   | Roseobacter denitrificans (rde) | 2 |
  |   | Ralstonia eutropha H16 (reh) | 13 |
  |   | Rhizobium etli (ret) | 9 |
  |   | Ralstonia eutropha JMP134 (reu) | 6 |
  |   | Rhodoferax ferrireducens (rfr) | 8 |
  |   | Rhizobium leguminosarum (rle) | 28 |
  |   | Ralstonia metallidurans (rme) | 11 |
  |   | Rhodospirillum rubrum (rru) | 72 |
  |   | Rhodobacter sphaeroides ATCC 17029 (rsh) | 11 |
  |   | Ralstonia solanacearum (rso) | 6 |
  |   | Rhodobacter sphaeroides 2.4.1 (rsp) | 9 |
  |   | Rhodobacter sphaeroides ATCC 17025 (rsq) | 19 |
  |   | Sphingopyxis alaskensis (sal) | 1 |
  |   | Syntrophus aciditrophicus (sat) | 1 |
  |   | Shewanella amazonensis (saz) | 1 |
  |   | Syntrophobacter fumaroxidans (sfu) | 2 |
  |   | Shigella flexneri 8401 (serotype 5b) (sfv) | 1 |
  |   | Shewanella sp. MR-7 (shm) | 1 |
  |   | Shewanella sp. W3-18-1 (shw) | 2 |
  |   | Silicibacter pomeroyi (sil) | 13 |
  |   | Silicibacter sp. TM1040 (sit) | 6 |
  |   | Shewanella loihica (slo) | 1 |
  |   | Sinorhizobium medicae (smd) | 8 |
  |   | Sinorhizobium meliloti (sme) | 16 |
  |   | Serratia proteamaculans (spe) | 2 |
  |   | Shewanella sediminis (sse) | 1 |
  |   | Sphingomonas wittichii (swi) | 12 |
  |   | Thiobacillus denitrificans (tbd) | 6 |
  |   | Thiomicrospira crunogena (tcx) | 1 |
  |   | Thiomicrospira denitrificans (tdn) | 1 |
  |   | Verminephrobacter eiseniae (vei) | 14 |
  |   | Vibrio harveyi (vha) | 1 |
  |   | Vibrio vulnificus YJ016 (vvy) | 2 |
  |   | Xanthomonas axonopodis (xac) | 3 |
  |   | Xanthobacter autotrophicus (xau) | 126 |
  |   | Xanthomonas campestris pv. campestris 8004 (xcb) | 2 |
  |   | Xanthomonas campestris pv. vesicatoria (xcv) | 4 |
  |   | Xylella fastidiosa 9a5c (xfa) | 1 |
  |   | Xylella fastidiosa Temecula1 (xft) | 2 |
  |   | Xanthomonas oryzae MAFF311018 (xom) | 1 |
  |   | Yersinia enterocolitica (yen) | 2 |
  | Spirochete |   | 1 |
  |   | Leptospira borgpetersenii L550 (lbl) | 1 |
Eukaryotes |   |   | 13 |
  | Animals |   | 2 |
  |   | Caenorhabditis elegans (nematode) (cel) | 1 |
  |   | Strongylocentrotus purpuratus (purple sea urchin) (spu) | 1 |
  | Fungi |   | 6 |
  |   | Aspergillus niger (ang) | 1 |
  |   | Aspergillus nidulans (ani) | 1 |
  |   | Fusarium graminearum (fgr) | 1 |
  |   | Saccharomyces cerevisiae (sce) | 1 |
  |   | Schizosaccharomyces pombe (spo) | 1 |
  |   | Yarrowia lipolytica (yli) | 1 |
  | Plants |   | 2 |
  |   | Ostreococcus lucimarinus (olu) | 2 |
  | Protists |   | 3 |
  |   | Dictyostelium discoideum (ddi) | 1 |
  |   | Leishmania major (lma) | 2 |
NULL |   |   | 159 |
TOTAL |   |   | 4822 |
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