BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig304
(19,885 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 486 e-137
ALSCPRRNA Alnus incana chloroplast 23S rRNA, 4.5S rRNA, 5S rRNA,... 420 e-117
Nico.tab_C Chloroplast Nicotiana tabacum. 2936 bp 404 e-112
Pisu.sat_C Chloroplast Pisum sativum. 2812 bp 404 e-112
Cono.ame_C Chloroplast Conopholis americana. 2810 bp 396 e-110
PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' ... 383 e-106
PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribo... 383 e-106
Oryz.sat_C Chloroplast Oryza sativa. 2981 bp 365 e-100
Eugl.gra_C Chloroplast Euglena gracilis. 2890 bp 345 2e-94
MZEMTCPAA Maize mitochondrion with chloroplast insert containing... 343 8e-94
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 486 bits (245), Expect = e-137
Identities = 360/397 (90%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 2479 atgtcggctcatcgcaacctggggctgaagtcggtcccaagggttgggctgttcgcccat 2538
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgc 2598
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||||||||| |||||||||| ||| ||||||||||||||||||| | ||||||||
Sbjct: 2599 aggcgtaagagtattgagaggatttctccctagtacgagaggaccgggaggaacgcaccg 2658
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||||||||||||||||||||| ||||||| | ||| |||| ||||||
Sbjct: 2659 ctggtgtaccagttatcgtgccaacggtaaacgctgggtagctacgtgtggagtggataa 2718
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctcacagggttaacc 300
|||||||||||||||||||||||||||||||||||||||| | |||||| || ||| |
Sbjct: 2719 ccgctgaaagcatctaagtgggaagcccacctcaagatgagtactctca-tggcataagc 2777
Query: 301 tggtaaggtcacgggaagaccacccgttaataggcactcggtggaagtccagcaatggat 360
||||||||||||| ||| ||||||||||||||| || |||||||| |||||||||||
Sbjct: 2778 cagtaaggtcacgggtagaacacccgttaataggcgctatgtggaagttcagcaatggat 2837
Query: 361 gaagccaaggtgtactaacagaccgagggcttgacct 397
||||| ||| ||||||| ||||||||||||||||||
Sbjct: 2838 gaagctgaggcgtactaatagaccgagggcttgacct 2874
>ALSCPRRNA Alnus incana chloroplast 23S rRNA, 4.5S rRNA, 5S rRNA,
tRNA-Arg, and tRNA-Asn genes. 323 bp
Length = 323
Score = 420 bits (212), Expect = e-117
Identities = 269/288 (93%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 34 atgtcggctcttcgccacctggggctgtagtatgttccaagggttgggctgttcgcccat 93
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 153
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 154 gggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcacct 213
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 214 ctggtgtaccagttatcgtgcccacggtaaacgctgggtagccaagtgcggagcggataa 273
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 288
| ||||||||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 274 ctgctgaaagcatctaagtagtaagcccaccccaagatgagtgctctc 321
>Nico.tab_C Chloroplast Nicotiana tabacum. 2936 bp
Length = 2936
Score = 404 bits (204), Expect = e-112
Identities = 267/288 (92%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 2556 atgtcggctcttcgccacctggggctgtagtatgttccaagggttgggctgttcgcccat 2615
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 2675
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 2676 gggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcacct 2735
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 2736 ctggttgaccagttatcgtgcccacggtaaacgctgggtagccaagtgcggagcggataa 2795
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 288
| ||||||||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 2796 ctgctgaaagcatctaagtagtaagcccaccccaagatgagtgctctc 2843
>Pisu.sat_C Chloroplast Pisum sativum. 2812 bp
Length = 2812
Score = 404 bits (204), Expect = e-112
Identities = 267/288 (92%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 2525 atgtcggctcttcgccacctggagctgtagtaggttccaagggttgggctgttcgcccat 2584
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2585 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 2644
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 2645 gggcgttagagcattgagaggacatttccctagtacgagaggaccgggaaggacgcacct 2704
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2705 ctggtgtgccagttatcgtgccaacggtaaacgctgggtagccaagtgcggagcggataa 2764
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 288
| ||||||||||||||||| | ||||||||| ||||||| |||||||
Sbjct: 2765 ctgctgaaagcatctaagtagtaagcccaccctaagatgagtgctctc 2812
>Cono.ame_C Chloroplast Conopholis americana. 2810 bp
Length = 2810
Score = 396 bits (200), Expect = e-110
Identities = 266/288 (92%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 2521 atgtcggctcttcgccacctggggctgtagtatgttccaagggttgggctgttcgcccat 2580
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2581 taaagcggtacgtgagctgggttcagaacgtcgtgagacagtttggtccatatccggtgt 2640
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 2641 gggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcacct 2700
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||||||||| ||||||||||| ||||||||||||| || ||||||||
Sbjct: 2701 ctggtgtaccagttatcgtgcccacggtaaacgctgggtagccaagtgtggggcggataa 2760
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 288
| ||||||||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 2761 ctgctgaaagcatctaagtagtaagcccaccccaagatgagtgctctc 2808
>PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3'
end, 5S ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 383 bits (193), Expect = e-106
Identities = 295/329 (89%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 315 atgtcggctcatcgcatcctggggcggtagtacgtcccaagggttgggctgttcgcccat 374
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaaagcggtacgcgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 434
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
|||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 435 aggcgttagagtattgagaggatttctccttagtacgagaggaccgggagagacgcacct 494
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||| ||||||||||||||||| ||||||| |||| |||| ||||||
Sbjct: 495 ctggtgtaccagttattgtgccaacggtaaacgctgggtagctaagtacggaaaggataa 554
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctcacagggttaacc 300
||||||||||||||||||||||||||| |||||||||||| | |||||| | |||| |
Sbjct: 555 ccgctgaaagcatctaagtgggaagccaacctcaagatgagtactctcattgttttaaac 614
Query: 301 tggtaaggtcacgggaagaccacccgtta 329
|||||||||||| ||||| | ||||||
Sbjct: 615 aagtaaggtcacggcaagactagccgtta 643
>PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S
ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 383 bits (193), Expect = e-106
Identities = 295/329 (89%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 315 atgtcggctcatcgcatcctggggcggtagtacgtcccaagggttgggctgttcgcccat 374
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaaagcggtacgcgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 434
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
|||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 435 aggcgttagagtattgagaggatttctccttagtacgagaggaccgggagagacgcacct 494
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||||||||||||||||||||| ||||||| |||| ||| ||||||
Sbjct: 495 ctggtgtaccagttatcgtgccaacggtaaacgctgggtagctaagtacgggaaggataa 554
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctcacagggttaacc 300
||||||||||||||||||||||||||| |||||||||||| | |||||| | |||| |
Sbjct: 555 ccgctgaaagcatctaagtgggaagccaacctcaagatgagtactctcattgttttaaac 614
Query: 301 tggtaaggtcacgggaagaccacccgtta 329
|||||||||||| ||||| | ||||||
Sbjct: 615 aagtaaggtcacggcaagactagccgtta 643
>Oryz.sat_C Chloroplast Oryza sativa. 2981 bp
Length = 2981
Score = 365 bits (184), Expect = e-100
Identities = 263/288 (91%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||| |||| ||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 2599 atgtcggctcttcgccacctggagctgtaggtggttccaagggttgggctgttcgcccat 2658
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 taatgcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 2718
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 2719 gggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcacct 2778
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||||||| | ||||||||||| |||||||||||||||||| ||||||
Sbjct: 2779 ctggtgtaccagttatcgtg-ctacggtaaacgctgggtagccaagtgcggagaggataa 2837
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 288
| ||||||||||| ||||| | ||||||||| |||||||| |||||||
Sbjct: 2838 ctgctgaaagcatataagtagtaagcccaccccaagatgagtgctctc 2885
>Eugl.gra_C Chloroplast Euglena gracilis. 2890 bp
Length = 2890
Score = 345 bits (174), Expect = 2e-94
Identities = 252/278 (90%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 2507 atgtcggctcatcgcaacctggggcggtagtacgtcccaagggttgggctgttcgcccat 2566
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2567 taaagcggtacgtgagctgggttcagaacgtcgagagacagttcggtccatatccggtgt 2626
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
|||| |||| ||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2627 gagcgttagagtattgaaaggcgctttccttagtacgagaggaccgggaaggacgcacca 2686
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
||| |||||| ||| | |||||||| | | |||| |||||| ||||||||||| ||||||
Sbjct: 2687 ctgatgtaccagtttttgtgccaacagaatacgctgggtagtcaagtgcggagtggataa 2746
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagat 278
| ||||||||||| ||||| |||||||||||| |||||
Sbjct: 2747 ctgctgaaagcatataagtaggaagcccaccttaagat 2784
>MZEMTCPAA Maize mitochondrion with chloroplast insert containing
rRNAs. 577 bp
Length = 577
Score = 343 bits (173), Expect = 8e-94
Identities = 260/288 (90%), Gaps = 2/288 (0%)
Strand = Plus / Plus
Query: 1 atgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgcccat 60
|||||||||| |||| ||| | ||||||| ||| ||||||||||||||||||||||
Sbjct: 289 atgtcggctcttcgccacctagagctgtaggtggttccaagggttgggctgttcgccc-- 346
Query: 61 taaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 taatgcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggtgt 406
Query: 121 aggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcaccg 180
||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 407 gggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcacct 466
Query: 181 ctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggataa 240
|||||||||| ||||||||||| ||||||||||| ||||||||||||| |||| ||||||
Sbjct: 467 ctggtgtaccagttatcgtgcctacggtaaacgctgggtagccaagtgtggagaggataa 526
Query: 241 ccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 288
| ||||||||||| ||||| | ||||||||| |||||||| |||||||
Sbjct: 527 ctgctgaaagcatataagtagtaagcccaccccaagatgagtgctctc 574
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,127
Number of Sequences: 1398
Number of extensions: 12127
Number of successful extensions: 1430
Number of sequences better than 1.0e-40: 32
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 112
length of query: 19,885
length of database: 1,019,713
effective HSP length: 17
effective length of query: 19,868
effective length of database: 995,947
effective search space: 19787474996
effective search space used: 19787474996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 85 (169.0 bits)
BLASTN 2.2.5 [Nov-16-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig360
(347,519 letters)
Database: /auto/database/rrna/23S.fasta
1398 sequences; 1,019,713 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp 1558 0.0
PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' ... 771 0.0
PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribo... 771 0.0
CHCERRN1 Chlorella ellipsoidea chloroplast 16S-23S DNA spacer. 7... 704 0.0
Clrl.ell_C Chloroplast Chlorella ellipsoidea. 3207 bp 690 0.0
Nico.tab_C Chloroplast Nicotiana tabacum. 2936 bp 682 0.0
Pisu.sat_C Chloroplast Pisum sativum. 2812 bp 670 0.0
Cono.ame_C Chloroplast Conopholis americana. 2810 bp 654 0.0
Marc.pol_C Chloroplast Marchantia polymorpha. 2863 bp 650 0.0
Oryz.sat_C Chloroplast Oryza sativa. 2981 bp 622 e-176
>Syn.6301 Synechococcus sp. str. CIP 6301. 2886 bp
Length = 2886
Score = 1558 bits (786), Expect = 0.0
Identities = 1156/1273 (90%), Gaps = 6/1273 (0%)
Strand = Plus / Plus
Query: 109115 gtacccgaaaccgacacaggtaggaaggtagagaatactaaggggcgcgagataactctc 109174
|||||| |||||||||||||| ||| ||||||| |||| |||||||||||| ||||||||
Sbjct: 1605 gtaccctaaaccgacacaggtgggacggtagagtataccaaggggcgcgaggtaactctc 1664
Query: 109175 tctaaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgcc-accga-gagg 109232
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | || |
Sbjct: 1665 tctaaggaactcggcaaaatgactccgtaacttcgggagaaggagtgcccacctaagacg 1724
Query: 109233 tgg-tcgcagtgaataggcccaggcgactgtttaccaaaaacacaggtctctgccaagtc 109291
||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1725 tgggtcgcagtgaagaggcccaggcgactgtttaccaaaaacacaggtctccgctaagtc 1784
Query: 109292 gtaagacgcagtataggggctgacgcctgcccagtgccggaaggttaaggaagttggtta 109351
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 1785 gtaagacgatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagctggtca 1844
Query: 109352 gtttcgacgaagctagcgaccgaagccccggtgaacggcggccgtaactataacggtcct 109411
| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 gcgcaagtgaagctggcgaccgaagccccggtgaacggcggccgtaactataacggtcct 1904
Query: 109412 aaggtagcgaaattccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgg 109471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 aaggtagcgaaattccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgg 1964
Query: 109472 gcactgtctcggagagaggctcggcgaaataggattgtctgtgaagatacggactacctg 109531
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1965 gcgctgtctcagagagaggctcggcgaaataggagtgtctgtgaagatacggactacctg 2024
Query: 109532 cacctggacagaaagaccctatgaagctttactgtagcttggaattgggttcgggcttcc 109591
|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2025 cacccggacagaaagaccctatgaagctttactgtagcttggtattggcttcgggctttg 2084
Query: 109592 tttgcgcagcataggtgggaggcgttgaagttttcctcgtggggagaatggagccaacgg 109651
||||||| ||||||||||||| ||| |||||| |||||| | ||||||||||||
Sbjct: 2085 actgcgcaggataggtgggaggctatgagactttccttgtgggggaagtggagccaacgg 2144
Query: 109652 tgagataccactctagggaggctagaattctaacttaagcccgtaatccgggttaagaac 109711
|||||||||||||| | ||||||| |||||||| |||| |||||| ||| |
Sbjct: 2145 tgagataccactctgtcaaagctagaagtctaactttgagccgttatccggccgaag--c 2202
Query: 109712 agtttcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcgca 109771
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 agtatcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcgca 2262
Query: 109772 aaggttccctcaggctggttagaaatcagccgcagagtgcaaaggcagaagggagcttga 109831
|||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 2263 aaggttccctcaggctggttggaaatcagccgacgagtgcaaaggcataagggagcttga 2322
Query: 109832 ctgcgagacaaacaagtcaagcagggacgaaagtcggccttagtgatccgacggcaccga 109891
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2323 ctgcaagacctacaagtcgagcagggacgaaagtcggccttagtgatccgacggttctga 2382
Query: 109892 gtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatctcccc 109951
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2383 gtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatctcctc 2442
Query: 109952 caagagttcatatcgacggggaggtttggcacctcgatgtcggctcatcgcagcctgggg 110011
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2443 caagagttcacatcgacgaggaggtttggcacctcgatgtcggctcatcgcaacctgggg 2502
Query: 110012 ctgtagtaggtcccaagggttgggctgttcgcccattaaagcggtacgtgagctgggttc 110071
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 ctgaagtcggtcccaagggttgggctgttcgcccattaaagcggtacgtgagctgggttc 2562
Query: 110072 agaacgtcgtgagacagttcggtccatatccggtgtaggcgtaagagcattgagaggagc 110131
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 2563 agaacgtcgtgagacagttcggtccatatccggtgcaggcgtaagagtattgagaggatt 2622
Query: 110132 cttccttagtacgagaggaccgggaaggacgcaccgctggtgtacctgttatcgtgccaa 110191
||| ||||||||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct: 2623 tctccctagtacgagaggaccgggaggaacgcaccgctggtgtaccagttatcgtgccaa 2682
Query: 110192 cggtaaacgcagggtagccaagtgcggagcggataaccgctgaaagcatctaagtgggaa 110251
|||||||||| ||||||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 2683 cggtaaacgctgggtagctacgtgtggagtggataaccgctgaaagcatctaagtgggaa 2742
Query: 110252 gcccacctcaagatgattgctctcacagggttaacctggtaaggtcacgggaagaccacc 110311
|||||||||||||||| | |||||| || ||| | ||||||||||||| ||| ||||
Sbjct: 2743 gcccacctcaagatgagtactctca-tggcataagccagtaaggtcacgggtagaacacc 2801
Query: 110312 cgttaataggcactcggtggaagtccagcaatggatgaagccaaggtgtactaacagacc 110371
||||||||||| || |||||||| |||||||||||||||| ||| ||||||| |||||
Sbjct: 2802 cgttaataggcgctatgtggaagttcagcaatggatgaagctgaggcgtactaatagacc 2861
Query: 110372 gagggcttgacct 110384
|||||||||||||
Sbjct: 2862 gagggcttgacct 2874
Score = 426 bits (215), Expect = e-117
Identities = 317/351 (90%)
Strand = Plus / Plus
Query: 107781 tggggttgtgggacagtgacgtggactgtagcggttaaacgaagcagctgaaaactgcac 107840
|||||| ||||||||| | ||||||||| |||| ||||||||||||||||||||||
Sbjct: 276 tggggtcgtgggacagcaatgtggactgtgaatgttagacgaagcagctgaaaactgcac 335
Query: 107841 cagagaaggtgaaagtcctgtagttgaaaacttaagcagcctaactgtatcccgagtagc 107900
|||||||||||||||||||||||| ||||| | || ||||||| ||| ||||||||||||
Sbjct: 336 cagagaaggtgaaagtcctgtagtcgaaaattgaaacagcctagctgaatcccgagtagc 395
Query: 107901 acggagcccgtggaattccgtgtgaatcagcgaggaccacctcgtaaggctaaatactcc 107960
||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 acggagcacgtgaaattccgtgtgaatccgcgaggaccacctcgtaaggctaaatactcc 455
Query: 107961 tgtgtgaccgatagagaaacagtaccgcgagggaaaggtgaaaagaaccccggaagggga 108020
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgtgtgaccgatagtgaaccagtaccgcgagggaaaggtgaaaagaaccccggaagggga 515
Query: 108021 gtgaaatagaacatgaaaccgttagcctacaagcaatgggaggacgatttaacgtctgac 108080
|||||||||||||||||||||| ||| |||||||| | |||| ||||| |||| ||||
Sbjct: 516 gtgaaatagaacatgaaaccgtgagcttacaagcagtcggagcccgattcaacgggtgac 575
Query: 108081 cgtgtgcctgttgaagaatgagccggcgacttacaggctgtggcaggttaa 108131
| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 576 ggcgtgcctgttgaagaatgagccggcgacttataggcactggcaggttaa 626
Score = 337 bits (170), Expect = 9e-91
Identities = 261/290 (90%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 108396 ttcgctgcgggctgcgagagcggtaccaaagcgagataaactcagaataccctgtaagca 108455
|||| ||||||||||||||||||||||||| |||| |||||| |||||| | || ||
Sbjct: 890 ttcggtgcgggctgcgagagcggtaccaaatcgagtcaaactccgaatacgccgtgtaca 949
Query: 108456 tcaa-ccagtgagacggtgggggataagcttcatcgtcgaaagggaaacagcccagacca 108514
|| ||||| |||| |||||||||||||| ||| ||| | |||||||||||||||||||
Sbjct: 950 ccatgccagtcagactgtgggggataagctccatggtcaagagggaaacagcccagacca 1009
Query: 108515 ccagctaaggtccccaaataaatactaagtgataaaggaggtgggagtgcatagacaacc 108574
||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 1010 ccagctaaggtcctcaaatcagaacttagtgataaaggaggtgggagtgcatagacaacc 1069
Query: 108575 aggaggtttgcctagaagcagcaatccttgaaagagtgcgtaatagctcactggtcaagc 108634
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1070 aggaggtttgcctagaagcagccatccttaaaagagtgcgtaatagctcactggtcaagc 1129
Query: 108635 gctcctgcgccgaaaatgaacggggctaagtattttaccgaagctgtgga 108684
||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1130 gctcctgcgccgaaaatgaacggggctaagttctgtaccgaagctgtgga 1179
Score = 272 bits (137), Expect = 4e-71
Identities = 200/221 (90%)
Strand = Plus / Plus
Query: 108145 gaagccaaagtgaaagcgagcctgacaagggcgatagtcacagtttgtagacccgaaccc 108204
|||||||||| ||||||||| |||| ||||||||||||| |||| |||||||||||||
Sbjct: 639 gaagccaaagcgaaagcgagtctgaatagggcgatagtcagtgtttatagacccgaaccc 698
Query: 108205 gggtgatctaaccatggccaggataaagctagggtaataccttgtggaggtccgaaccga 108264
|||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||
Sbjct: 699 gggtgatctaaccatggccaggatgaagcttgggtaacaccaagtggaggtccgaaccga 758
Query: 108265 cttctgttgaaaaaggagcggatgagctgtggttaggggtgaaatgccaatcgaacccgg 108324
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ccgatgttgaaaaatcggcggatgagctgtggttaggggtgaaatgccaatcgaacccgg 818
Query: 108325 agctagctggttctccccgaaatgcgtttaggcgcagcggt 108365
||||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 819 agctagctggttctccccgaaatacgttgaggcgtagcggt 859
Score = 244 bits (123), Expect = 1e-62
Identities = 231/263 (87%), Gaps = 3/263 (1%)
Strand = Plus / Plus
Query: 107505 ggtcaagctacaaagggctaacggtggatacctaggcacacagaggcgaagaaggacgta 107564
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcaagctacgaagggcttacggtggatacctaggcacacagaggcgaagaaggacgtg 60
Query: 107565 gttaccgacgatacgctccggggagctggaagcaagcattgagccggagatttcccaatg 107624
| |||||||||||||| ||||||||||| |||||||||||| ||| ||||||| ||||
Sbjct: 61 gctaccgacgatacgcctcggggagctgg-agcaagcattgatccgaggatttccgaatg 119
Query: 107625 gggcaaccccaagaacggtcacctgaatctatagggt-gatgcgagcgaactgggcgaac 107683
||||||||||| | |||| |||||||||| ||||||| | |||| ||||| ||||||
Sbjct: 120 gggcaaccccatgtacggccacctgaatccatagggtggccgcga-cgaacccggcgaat 178
Query: 107684 tgaaacatcttagtaacccaaggaagagaaagcaaaagcgattcccctagtagcggcgag 107743
||||||||||||||| || ||||||||||| |||||| ||||||| ||||||||||||
Sbjct: 179 tgaaacatcttagtagccggaggaagagaaaacaaaagtgattccctcagtagcggcgag 238
Query: 107744 cgaagagggacaagcctaaacca 107766
|||| ||||| |||||||||||
Sbjct: 239 cgaacggggaccagcctaaacca 261
Score = 202 bits (102), Expect = 3e-50
Identities = 191/218 (87%), Gaps = 2/218 (0%)
Strand = Plus / Plus
Query: 108761 ttggtaggggagcgttctgta-tagggtgaagcactagcggcaagcaggtgtggacagta 108819
||||||||||||||||| || ||||||||||| |||||| |||||| |||||| |
Sbjct: 1192 ttggtaggggagcgttccgtcgtagggtgaagcggtagcgg-aagcagccgtggacgaaa 1250
Query: 108820 cagaagtgagaatgtcggcttgagtagcgaaaatatatgtgagaatcgtataccccgaaa 108879
| ||||||||||||||||||||||||||||||| || ||||||||| || ||||||||
Sbjct: 1251 cggaagtgagaatgtcggcttgagtagcgaaaacatgggtgagaatcccatgccccgaaa 1310
Query: 108880 tcctaagggttcctccggaaggctcgtccgcggagggttagtcgggacctaaggcgaggc 108939
||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1311 tcccaagggttcctccggaaggctcgtccgcggagggttagtcaggtcctaaggcgaggc 1370
Query: 108940 cgaaaggcgtagtcgatggaaacaaggttaatattcct 108977
||| |||||||||||||| | ||||||||||||||
Sbjct: 1371 agaagtgcgtagtcgatggacaacaggttaatattcct 1408
>PTERGD Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' end, 5S
ribosomal RNA gene, complete cds. 713 bp
Length = 713
Score = 771 bits (389), Expect = 0.0
Identities = 554/609 (90%)
Strand = Plus / Plus
Query: 109708 gaacagtttcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcg 109767
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 35 gaacagttccaggtaggcagtttgactggggcggtcgcctcctaaaaagtaacggaggcg 94
Query: 109768 cgcaaaggttccctcaggctggttagaaatcagccgcagagtgcaaaggcagaagggagc 109827
|||||||||| ||||||||||| |||||||| || |||||| ||||||| ||| ||||
Sbjct: 95 tgcaaaggttctctcaggctggtcggaaatcagtcgtagagtgtaaaggcataagagagc 154
Query: 109828 ttgactgcgagacaaacaagtcaagcagggacgaaagtcggccttagtgatccgacggca 109887
||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||| ||| |
Sbjct: 155 ttgactgtgagacctacaagtcgaacagagacgaaagtcggccttagtgatccggcggta 214
Query: 109888 ccgagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatct 109947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ccgagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatct 274
Query: 109948 cccccaagagttcatatcgacggggaggtttggcacctcgatgtcggctcatcgcagcct 110007
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 275 cccccaagagttcacatcgacggggaggtttggcacctcgatgtcggctcatcgcatcct 334
Query: 110008 ggggctgtagtaggtcccaagggttgggctgttcgcccattaaagcggtacgtgagctgg 110067
||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 335 ggggcggtagtacgtcccaagggttgggctgttcgcccatgaaagcggtacgcgagctgg 394
Query: 110068 gttcagaacgtcgtgagacagttcggtccatatccggtgtaggcgtaagagcattgagag 110127
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 395 gttcagaacgtcgtgagacagttcggtccatatccggtgtaggcgttagagtattgagag 454
Query: 110128 gagccttccttagtacgagaggaccgggaaggacgcaccgctggtgtacctgttatcgtg 110187
|| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||
Sbjct: 455 gatttctccttagtacgagaggaccgggagagacgcacctctggtgtaccagttattgtg 514
Query: 110188 ccaacggtaaacgcagggtagccaagtgcggagcggataaccgctgaaagcatctaagtg 110247
|||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct: 515 ccaacggtaaacgctgggtagctaagtacggaaaggataaccgctgaaagcatctaagtg 574
Query: 110248 ggaagcccacctcaagatgattgctctcacagggttaacctggtaaggtcacgggaagac 110307
||||||| |||||||||||| | |||||| | |||| | |||||||||||| |||||
Sbjct: 575 ggaagccaacctcaagatgagtactctcattgttttaaacaagtaaggtcacggcaagac 634
Query: 110308 cacccgtta 110316
| ||||||
Sbjct: 635 tagccgtta 643
>PTERGC Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribosomal RNA
gene, complete cds. 713 bp
Length = 713
Score = 771 bits (389), Expect = 0.0
Identities = 554/609 (90%)
Strand = Plus / Plus
Query: 109708 gaacagtttcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcg 109767
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 35 gaacagttccaggtaggcagtttgactggggcggtcgcctcctaaaaagtaacggaggcg 94
Query: 109768 cgcaaaggttccctcaggctggttagaaatcagccgcagagtgcaaaggcagaagggagc 109827
|||||||||| ||||||||||| |||||||| || |||||| ||||||| ||| ||||
Sbjct: 95 tgcaaaggttctctcaggctggtcggaaatcagtcgtagagtgtaaaggcataagagagc 154
Query: 109828 ttgactgcgagacaaacaagtcaagcagggacgaaagtcggccttagtgatccgacggca 109887
||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||| ||| |
Sbjct: 155 ttgactgtgagacctacaagtcgaacagagacgaaagtcggccttagtgatccggcggta 214
Query: 109888 ccgagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatct 109947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ccgagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatct 274
Query: 109948 cccccaagagttcatatcgacggggaggtttggcacctcgatgtcggctcatcgcagcct 110007
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 275 cccccaagagttcacatcgacggggaggtttggcacctcgatgtcggctcatcgcatcct 334
Query: 110008 ggggctgtagtaggtcccaagggttgggctgttcgcccattaaagcggtacgtgagctgg 110067
||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 335 ggggcggtagtacgtcccaagggttgggctgttcgcccatgaaagcggtacgcgagctgg 394
Query: 110068 gttcagaacgtcgtgagacagttcggtccatatccggtgtaggcgtaagagcattgagag 110127
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 395 gttcagaacgtcgtgagacagttcggtccatatccggtgtaggcgttagagtattgagag 454
Query: 110128 gagccttccttagtacgagaggaccgggaaggacgcaccgctggtgtacctgttatcgtg 110187
|| ||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 455 gatttctccttagtacgagaggaccgggagagacgcacctctggtgtaccagttatcgtg 514
Query: 110188 ccaacggtaaacgcagggtagccaagtgcggagcggataaccgctgaaagcatctaagtg 110247
|||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct: 515 ccaacggtaaacgctgggtagctaagtacgggaaggataaccgctgaaagcatctaagtg 574
Query: 110248 ggaagcccacctcaagatgattgctctcacagggttaacctggtaaggtcacgggaagac 110307
||||||| |||||||||||| | |||||| | |||| | |||||||||||| |||||
Sbjct: 575 ggaagccaacctcaagatgagtactctcattgttttaaacaagtaaggtcacggcaagac 634
Query: 110308 cacccgtta 110316
| ||||||
Sbjct: 635 tagccgtta 643
>CHCERRN1 Chlorella ellipsoidea chloroplast 16S-23S DNA spacer. 710 bp
Length = 710
Score = 704 bits (355), Expect = 0.0
Identities = 518/567 (91%), Gaps = 4/567 (0%)
Strand = Plus / Plus
Query: 109710 acagtttcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcg 109769
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 35 acagtttcaggtgggcagtttgactggggcggtcgc-tcctaaacagtaacggaggcgtg 93
Query: 109770 caaaggttccctcaggctggttagaaatcagccgcagagtgcaaaggcagaagggagctt 109829
|||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||
Sbjct: 94 caaaggttccctcaggctggacggaaatcagccgaagagtgtaaaggcaaaagggagctt 153
Query: 109830 gactgcgagacaaacaagtcaagcagggacgaaagtcggccttagtgatccgacggcacc 109889
|||||| |||| ||||||| ||||||| ||||| ||||||||||||||||||| |||
Sbjct: 154 gactgcaagacctacaagtcgagcaggggcgaaacg-ggccttagtgatccgacggtacc 212
Query: 109890 gagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatctcc 109949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 213 gagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatcttc 272
Query: 109950 cccaagagttcatatcgacggggaggtttggcacctcgatgtcggctcatcgcagcctgg 110009
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 273 cccaagagttcacatcgacgggaaggtttggcacctcgatgtcggctcatcgcaacctgg 332
Query: 110010 ggctgtagtaggt-cccaagggttgggctgttcgcccattaaagcggtacgtgagctggg 110068
|| |||||| || |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 333 agcggtagtacgttcccaagggttgggctgttcgcc-atgaaagcggtacgtgagctggg 391
Query: 110069 ttcagaacgtcgtgagacagttcggtccatatccggtgtaggcgtaagagcattgagagg 110128
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttcagaacgtcgtgagcaagttcggtccatatccggtgtaggcgtaagagcattgagagg 451
Query: 110129 agccttccttagtacgagaggaccgggaaggacgcaccgctggtgtacctgttatcgtgc 110188
|| ||||| | ||||||||||||| ||||| ||||||| || || |||| ||| || |||
Sbjct: 452 agtcttccattgtacgagaggacctggaagaacgcaccactagtataccagttctcctgc 511
Query: 110189 caacggtaaacgcagggtagccaagtgcggagcggataaccgctgaaagcatctaagtgg 110248
||| || | |||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 512 caaggggatacgctgggtagccaagtgcggagcggataactgctgaaagcatctaagtag 571
Query: 110249 gaagcccacctcaagatgattgctctc 110275
||||||||||||||||||| |||||||
Sbjct: 572 gaagcccacctcaagatgagtgctctc 598
>Clrl.ell_C Chloroplast Chlorella ellipsoidea. 3207 bp
Length = 3207
Score = 690 bits (348), Expect = 0.0
Identities = 516/567 (91%), Gaps = 5/567 (0%)
Strand = Plus / Plus
Query: 109710 acagtttcaggtgggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgcg 109769
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 2533 acagtttcaggtgggcagtttgactggggcggtcgc-tcctaaacagtaacggaggcgtg 2591
Query: 109770 caaaggttccctcaggctggttagaaatcagccgcagagtgcaaaggcagaagggagctt 109829
|||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||
Sbjct: 2592 caaaggttccctcaggctggacggaaatcagccgaagagtgtaaaggcaaaagggagctt 2651
Query: 109830 gactgcgagacaaacaagtcaagcagggacgaaagtcggccttagtgatccgacggcacc 109889
|||||| |||| ||||||| ||||||| ||||| ||||||||||||||||||| |||
Sbjct: 2652 gactgcaagacctacaagtcgagcaggggcgaaacg-ggccttagtgatccgacggtacc 2710
Query: 109890 gagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatctcc 109949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2711 gagtggaagggccgtcgctcaacggataaaagttactctagggataacaggctgatcttc 2770
Query: 109950 cccaagagttcatatcgacggggaggtttggcacctcgatgtcggctcatcgcagcctgg 110009
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 2771 cccaagagttcacatcgacgggaaggtttggcacctcgatgtcggctcatcgcaacctgg 2830
Query: 110010 ggctgtagtaggt-cccaagggttgggctgttcgcccattaaagcggtacgtgagctggg 110068
|| |||||| || ||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 2831 agcggtagtacgttcccaagggttgggctgttcgc--atgaaagcggtacgtgacctggg 2888
Query: 110069 ttcagaacgtcgtgagacagttcggtccatatccggtgtaggcgtaagagcattgagagg 110128
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2889 ttcagaacgtcgtgagcaagttcggtccatatccggtgtaggcgtaagagcattgagagg 2948
Query: 110129 agccttccttagtacgagaggaccgggaaggacgcaccgctggtgtacctgttatcgtgc 110188
|| ||||| | ||||||||||||| ||||| ||||||| || || |||| ||| || |||
Sbjct: 2949 agtcttccattgtacgagaggacctggaagaacgcaccactagtataccagttctcctgc 3008
Query: 110189 caacggtaaacgcagggtagccaagtgcggagcggataaccgctgaaagcatctaagtgg 110248
||| || | |||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 3009 caaggggatacgctgggtagccaagtgcggagcggataactgctgaaagcatctaagtag 3068
Query: 110249 gaagcccacctcaagatgattgctctc 110275
||||||||||||||||||| |||||||
Sbjct: 3069 gaagcccacctcaagatgagtgctctc 3095
Score = 323 bits (163), Expect = 1e-86
Identities = 233/251 (92%), Gaps = 4/251 (1%)
Strand = Plus / Plus
Query: 109370 accgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattcctt 109429
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2193 accgaagccccggtgaa-ggcggccgtaactataacggtgctaaggtagcgaaattcctt 2251
Query: 109430 gtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggagagag 109489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 gtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggagagag 2311
Query: 109490 gctcggcgaaataggattgtctgt-gaagatacggactacctgcacctggacagaaagac 109548
|||||| ||||||| |||| || |||||| ||||| |||||||||||||||||||||
Sbjct: 2312 gctcggtgaaatagacatgtccgtggaagatgaggacttcctgcacctggacagaaagac 2371
Query: 109549 cctatgaagctttactgtagcttggaattgggttcgggcttcctttgcgcagcataggtg 109608
|||||||||||| |||||||| |||||||| ||||||||| | ||||||||| ||||||
Sbjct: 2372 cctatgaagcttgactgtagcctggaattgaattcgggctttc-ttgcgcagc-taggtg 2429
Query: 109609 ggaggcgttga 109619
|||||||||||
Sbjct: 2430 ggaggcgttga 2440
Score = 206 bits (104), Expect = 2e-51
Identities = 196/226 (86%), Gaps = 3/226 (1%)
Strand = Plus / Plus
Query: 107888 tatcccgagtagcacggagcccgtggaattccgtgtgaatcagcgaggaccacctcgtaa 107947
||||||||||||| || || |||| ||| |||||||||| |||||||||||||||||||
Sbjct: 394 tatcccgagtagctaggggcacgtgaaatcccgtgtgaatgagcgaggaccacctcgtaa 453
Query: 107948 ggctaaatactcctgtgtgaccgatagagaaacagtaccgcgagggaaaggtgaaaagaa 108007
|||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |
Sbjct: 454 ggctaaatactcctaggtgaccgatagtgaaatagtaccgcgagggaaaggtgaaaaaga 513
Query: 108008 ccccggaaggggagtgaaatagaacatgaaaccgttagcctacaagcaatgggaggacga 108067
||| | |||||||||||| ||||||||||||||| ||| |||||| ||| ||| |||
Sbjct: 514 accctgtaggggagtgaaacagaacatgaaaccgtaagctgtcaagcagtggcagggcga 573
Query: 108068 tttaacgtctgaccgtgtgcctgttgaagaatgagccggcgactta 108113
|| | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 574 ---aaagcctgaccgcgtgcctgttgaagaatgagccggcgactta 616
Score = 178 bits (90), Expect = 5e-43
Identities = 157/174 (90%), Gaps = 4/174 (2%)
Strand = Plus / Plus
Query: 108195 acccgaacccgggtgatctaaccatggccaggataaagctagggtaataccttgtggagg 108254
|||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||
Sbjct: 700 acccgaacccgggtgatctaaccatggccaggatgaagcttgggtaaaaccaagtggagg 759
Query: 108255 tccgaaccgacttctgttgaaaaaggagcggatgagctgtggttaggggtgaaatgccaa 108314
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 760 tccgaaccgaccgatgttgaaaaatcggcggatgagctgtggttaggggtgaaatgccaa 819
Query: 108315 tcgaacccggagctagctggttctccccg-aaatgcgtttaggcgcagcggttg 108367
|||||| | ||||||||| |||||||||| ||||||||| | ||||||||||||
Sbjct: 820 tcgaactc-gagctagct-gttctccccgtaaatgcgttga-gcgcagcggttg 870
>Nico.tab_C Chloroplast Nicotiana tabacum. 2936 bp
Length = 2936
Score = 682 bits (344), Expect = 0.0
Identities = 485/532 (91%)
Strand = Plus / Plus
Query: 109744 gcctcctaaaaggtaacggaggcgcgcaaaggttccctcaggctggttagaaatcagccg 109803
|||||| ||||||||||||||||| ||||||||| |||| ||| || || || |||
Sbjct: 2312 gcctcccaaaaggtaacggaggcgtgcaaaggtttcctcgggccggacggagattggccc 2371
Query: 109804 cagagtgcaaaggcagaagggagcttgactgcgagacaaacaagtcaagcagggacgaaa 109863
|||||||||||||||||||||||||||||| |||| || ||| |||||||||||||
Sbjct: 2372 tcgagtgcaaaggcagaagggagcttgactgcaagacccacccgtcgagcagggacgaaa 2431
Query: 109864 gtcggccttagtgatccgacggcaccgagtggaagggccgtcgctcaacggataaaagtt 109923
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2432 gtcggccttagtgatccgacggtgccgagtggaagggccgtcgctcaacggataaaagtt 2491
Query: 109924 actctagggataacaggctgatctcccccaagagttcatatcgacggggaggtttggcac 109983
|||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||
Sbjct: 2492 actctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcac 2551
Query: 109984 ctcgatgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgc 110043
|||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||
Sbjct: 2552 ctcgatgtcggctcttcgccacctggggctgtagtatgttccaagggttgggctgttcgc 2611
Query: 110044 ccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 110103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612 ccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 2671
Query: 110104 gtgtaggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgc 110163
|||| ||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 2672 gtgtgggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgc 2731
Query: 110164 accgctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcgg 110223
||| ||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2732 acctctggttgaccagttatcgtgcccacggtaaacgctgggtagccaagtgcggagcgg 2791
Query: 110224 ataaccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 110275
||||| ||||||||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 2792 ataactgctgaaagcatctaagtagtaagcccaccccaagatgagtgctctc 2843
Score = 325 bits (164), Expect = 3e-87
Identities = 191/200 (95%)
Strand = Plus / Plus
Query: 109367 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 109426
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1932 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcagaattc 1991
Query: 109427 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 109486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 2051
Query: 109487 gaggctcggcgaaataggattgtctgtgaagatacggactacctgcacctggacagaaag 109546
||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 2052 gaggctcggtgaaatagacatgtctgtgaagatgcggactacctgcacctagacagaaag 2111
Query: 109547 accctatgaagctttactgt 109566
|||||||||||||| |||||
Sbjct: 2112 accctatgaagcttcactgt 2131
Score = 236 bits (119), Expect = 2e-60
Identities = 182/203 (89%)
Strand = Plus / Plus
Query: 108462 agtgagacggtgggggataagcttcatcgtcgaaagggaaacagcccagaccaccagcta 108521
||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct: 965 agtgagacgatgggggataagcttcatcgtcgagagggaaacagcccggatcaccagcta 1024
Query: 108522 aggtccccaaataaatactaagtgataaaggaggtgggagtgcatagacaaccaggaggt 108581
||| ||| |||| | || ||||||||||||||| || ||||| ||||| |||||||||
Sbjct: 1025 aggcccctaaatgatcgctcagtgataaaggaggtaggggtgcagagacagccaggaggt 1084
Query: 108582 ttgcctagaagcagcaatccttgaaagagtgcgtaatagctcactggtcaagcgctcctg 108641
||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||
Sbjct: 1085 ttgcctagaagcagccacccttgaaagagtgcgtaatagctcactgatcgagcgctcttg 1144
Query: 108642 cgccgaaaatgaacggggctaag 108664
||||||| |||||||||||||||
Sbjct: 1145 cgccgaagatgaacggggctaag 1167
Score = 186 bits (94), Expect = 2e-45
Identities = 154/174 (88%)
Strand = Plus / Plus
Query: 108194 gacccgaacccgggtgatctaaccatggccaggataaagctagggtaataccttgtggag 108253
|||||||||| |||||||||| ||||| ||||||| ||||| |||| | || ||||||
Sbjct: 676 gacccgaacctgggtgatctatccatgaccaggatgaagcttgggtgaaactaagtggag 735
Query: 108254 gtccgaaccgacttctgttgaaaaaggagcggatgagctgtggttaggggtgaaatgcca 108313
||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||
Sbjct: 736 gtccgaaccgactgatgttgaagaatcagcggatgagttgtggttaggggtgaaatgcca 795
Query: 108314 atcgaacccggagctagctggttctccccgaaatgcgtttaggcgcagcggttg 108367
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 796 ctcgaacccagagctagctggttctccccgaaatgcgttgaggcgcagcagttg 849
>Pisu.sat_C Chloroplast Pisum sativum. 2812 bp
Length = 2812
Score = 670 bits (338), Expect = 0.0
Identities = 437/470 (92%)
Strand = Plus / Plus
Query: 109806 gagtgcaaaggcagaagggagcttgactgcgagacaaacaagtcaagcagggacgaaagt 109865
|||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||
Sbjct: 2343 gagtgcaaaggcagaagggagcttgactgcaagacccacccgtcgagcagggacgaaagt 2402
Query: 109866 cggccttagtgatccgacggcaccgagtggaagggccgtcgctcaacggataaaagttac 109925
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 cggccttagtgatccgacggtgccgagtggaagggccgtcgctcaacggataaaagttac 2462
Query: 109926 tctagggataacaggctgatctcccccaagagttcatatcgacggggaggtttggcacct 109985
|||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||
Sbjct: 2463 tctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacct 2522
Query: 109986 cgatgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgccc 110045
|||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 2523 cgatgtcggctcttcgccacctggagctgtagtaggttccaagggttgggctgttcgccc 2582
Query: 110046 attaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggt 110105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2583 attaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggt 2642
Query: 110106 gtaggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcac 110165
|| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 2643 gtgggcgttagagcattgagaggacatttccctagtacgagaggaccgggaaggacgcac 2702
Query: 110166 cgctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggat 110225
| ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2703 ctctggtgtgccagttatcgtgccaacggtaaacgctgggtagccaagtgcggagcggat 2762
Query: 110226 aaccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 110275
||| ||||||||||||||||| | ||||||||| ||||||| |||||||
Sbjct: 2763 aactgctgaaagcatctaagtagtaagcccaccctaagatgagtgctctc 2812
Score = 341 bits (172), Expect = 6e-92
Identities = 193/200 (96%)
Strand = Plus / Plus
Query: 109367 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 109426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 1965
Query: 109427 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 109486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 2025
Query: 109487 gaggctcggcgaaataggattgtctgtgaagatacggactacctgcacctggacagaaag 109546
||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2026 gagactcggtgaaatagacatgtctgtgaagatgcggactacctgcacctggacagaaag 2085
Query: 109547 accctatgaagctttactgt 109566
|||||||||||||| |||||
Sbjct: 2086 accctatgaagcttcactgt 2105
Score = 240 bits (121), Expect = 2e-61
Identities = 200/225 (88%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 108460 ccagtgagacggtgggggataagcttcatc-gtcgaaagggaaacagcccagaccaccag 108518
||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 960 ccagtgagacgatgggggataagcttcatctgtcgagagggaaacagcccagatcaccag 1019
Query: 108519 ctaaggtccccaaataaatactaagtgataaaggaggtgggagtgcatagacaaccagga 108578
|||||| ||| |||| | || ||||||||||||||| |||||||| ||||| ||||||
Sbjct: 1020 ctaaggcccctaaatgatcgctcagtgataaaggaggtaggagtgcagagacagccagga 1079
Query: 108579 ggtttgcctagaagcagcaatccttgaaagagtgcgtaatagctcactggtcaagcgctc 108638
|||||||||||||||||| | |||| ||||||||||||||||||||||| || |||||||
Sbjct: 1080 ggtttgcctagaagcagccacccttcaaagagtgcgtaatagctcactgatcgagcgctc 1139
Query: 108639 ctgcgccgaaaatgaacggggctaagtattttaccgaagctgtgg 108683
||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 1140 ttgcgccgaagatgaacggggctaagcgatttgccgaagctgtgg 1184
>Cono.ame_C Chloroplast Conopholis americana. 2810 bp
Length = 2810
Score = 654 bits (330), Expect = 0.0
Identities = 435/470 (92%)
Strand = Plus / Plus
Query: 109806 gagtgcaaaggcagaagggagcttgactgcgagacaaacaagtcaagcagggacgaaagt 109865
|||||||||||||||||||||||||||||| |||| || ||| ||||||||||||| |
Sbjct: 2339 gagtgcaaaggcagaagggagcttgactgcaagactcacccgtcgagcagggacgaaact 2398
Query: 109866 cggccttagtgatccgacggcaccgagtggaagggccgtcgctcaacggataaaagttac 109925
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 2399 cggccttagtgatccgacggtaccaagtggaagggccgtcgctcaacggataaaagttac 2458
Query: 109926 tctagggataacaggctgatctcccccaagagttcatatcgacggggaggtttggcacct 109985
|||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||
Sbjct: 2459 tctagggataacaggctgatcttccccaagagctcacatcgacgggaaggtttggcacct 2518
Query: 109986 cgatgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgccc 110045
|||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||
Sbjct: 2519 cgatgtcggctcttcgccacctggggctgtagtatgttccaagggttgggctgttcgccc 2578
Query: 110046 attaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggt 110105
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2579 attaaagcggtacgtgagctgggttcagaacgtcgtgagacagtttggtccatatccggt 2638
Query: 110106 gtaggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcac 110165
|| ||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 2639 gtgggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcac 2698
Query: 110166 cgctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggat 110225
| |||||||||| ||||||||||| ||||||||||| ||||||||||||| || ||||||
Sbjct: 2699 ctctggtgtaccagttatcgtgcccacggtaaacgctgggtagccaagtgtggggcggat 2758
Query: 110226 aaccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 110275
||| ||||||||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 2759 aactgctgaaagcatctaagtagtaagcccaccccaagatgagtgctctc 2808
Score = 337 bits (170), Expect = 9e-91
Identities = 188/194 (96%)
Strand = Plus / Plus
Query: 109367 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 109426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 1967
Query: 109427 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 109486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1968 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 2027
Query: 109487 gaggctcggcgaaataggattgtctgtgaagatacggactacctgcacctggacagaaag 109546
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2028 gaggctcggtgaaatagacatgtctgtgaagatgcggactacctgcacctggacagaaag 2087
Query: 109547 accctatgaagctt 109560
|||||| |||||||
Sbjct: 2088 accctacgaagctt 2101
Score = 216 bits (109), Expect = 2e-54
Identities = 181/205 (88%)
Strand = Plus / Plus
Query: 108460 ccagtgagacggtgggggataagcttcatcgtcgaaagggaaacagcccagaccaccagc 108519
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 967 ccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagc 1026
Query: 108520 taaggtccccaaataaatactaagtgataaaggaggtgggagtgcatagacaaccaggag 108579
||||| ||| || | | || ||||||||||||||| || ||||| ||||| |||||||
Sbjct: 1027 taaggcccctaattgatcgctcagtgataaaggaggtaggggtgcagagacagccaggag 1086
Query: 108580 gtttgcctagaagcagcaatccttgaaagagtgcgtaatagctcactggtcaagcgctcc 108639
||||||||||||||||| | |||||||| |||||||||||||| |||| || |||||||
Sbjct: 1087 gtttgcctagaagcagccacccttgaaatagtgcgtaatagcttactgatcgagcgctct 1146
Query: 108640 tgcgccgaaaatgaacggggctaag 108664
||||||||| || ||||||||||||
Sbjct: 1147 tgcgccgaagattaacggggctaag 1171
Score = 178 bits (90), Expect = 5e-43
Identities = 153/174 (87%)
Strand = Plus / Plus
Query: 108194 gacccgaacccgggtgatctaaccatggccaggataaagctagggtaataccttgtggag 108253
|||||||||| |||||||||| ||||| ||||||| ||||| ||| | || ||||||
Sbjct: 679 gacccgaacctgggtgatctatccatgaccaggatgaagctttggtgaaactaagtggag 738
Query: 108254 gtccgaaccgacttctgttgaaaaaggagcggatgagctgtggttaggggtgaaatgcca 108313
||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||
Sbjct: 739 gtccgaaccgactgatgttgaagaatcagcggatgagttgtggttaggggtgaaatgcca 798
Query: 108314 atcgaacccggagctagctggttctccccgaaatgcgtttaggcgcagcggttg 108367
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 799 ctcgaacccagagctagctggttctccccgaaatgcgttgaggcgcagcagttg 852
>Marc.pol_C Chloroplast Marchantia polymorpha. 2863 bp
Length = 2863
Score = 650 bits (328), Expect = 0.0
Identities = 439/476 (92%)
Strand = Plus / Plus
Query: 109744 gcctcctaaaaggtaacggaggcgcgcaaaggttccctcaggctggttagaaatcagccg 109803
|||||| ||||||||||||||| | ||||||||| ||||||||||| ||||||||||
Sbjct: 2278 gcctcccaaaaggtaacggaggtgtgcaaaggtttcctcaggctggacggaaatcagcct 2337
Query: 109804 cagagtgcaaaggcagaagggagcttgactgcgagacaaacaagtcaagcagggacgaaa 109863
|||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||
Sbjct: 2338 tcgagtgcaaaggcagaagggagcttgactgcaagacatacccgtcgagcagggacgaaa 2397
Query: 109864 gtcggccttagtgatccgacggcaccgagtggaagggccgtcgctcaacggataaaagtt 109923
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 2398 gtcggccttagtgatccgacggtaccaagtggaagggccgtcgctcaacggataaaagtt 2457
Query: 109924 actctagggataacaggctgatctcccccaagagttcatatcgacggggaggtttggcac 109983
|||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||
Sbjct: 2458 actctagggataacaggctgatcttccccaagagttcacatcgacgggaaggtttggcac 2517
Query: 109984 ctcgatgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgc 110043
|||||||||||||| |||| |||||||| |||||| || ||||||||||||||||||||
Sbjct: 2518 ctcgatgtcggctcttcgccacctggggcggtagtacgttccaagggttgggctgttcgc 2577
Query: 110044 ccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 110103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 ccattaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 2637
Query: 110104 gtgtaggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgc 110163
|||| ||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 2638 gtgtgggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgc 2697
Query: 110164 accgctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcgga 110219
||| |||| |||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 2698 acctctgggttaccagttatcgtgcccacggtaaacgctgggtagccaagtgcgga 2753
Score = 339 bits (171), Expect = 2e-91
Identities = 198/207 (95%)
Strand = Plus / Plus
Query: 109360 gaagctagcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagc 109419
||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1894 gaagccagcgactgaagccccggtaaacggcggccgtaactataacggtcctaaggtagc 1953
Query: 109420 gaaattccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtc 109479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 gaaattccttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtc 2013
Query: 109480 tcggagagaggctcggcgaaataggattgtctgtgaagatacggactacctgcacctgga 109539
|||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 2014 tcggagagagactcggtgaaatagacatgtctgtgaagatgcggactacctgcacctgga 2073
Query: 109540 cagaaagaccctatgaagctttactgt 109566
|||||||||||||||||||||||||||
Sbjct: 2074 cagaaagaccctatgaagctttactgt 2100
Score = 301 bits (152), Expect = 5e-80
Identities = 218/238 (91%), Gaps = 4/238 (1%)
Strand = Plus / Plus
Query: 109115 gtacccgaaaccgacacaggtaggaaggtagagaatactaaggggcgcgagataactctc 109174
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 1643 gtacccgaaaccgacacaggtaggtaggtagagaatacctaggggcgcgagataactctc 1702
Query: 109175 tctaaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgccacc---gagag 109231
|||||||||||||||||||| ||||||||||||||||||||||||||| || | ||
Sbjct: 1703 tctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctctaaaag 1762
Query: 109232 gtggtcgcagtgaataggcccaggcgactgtttaccaaaaacacaggtctctgccaagtc 109291
| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1763 gaggtcgcagtgaccaggcccaggcgactgtttaccaaaaacacaggtctccgcaaagtc 1822
Query: 109292 gtaagacgcagtataggggctgacgcctgcccagtgccggaaggttaaggaagttggt 109349
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 gtaagaccatgtat-ggggctgacgcctgcccagtgccggaaggttaaggaagttggt 1879
Score = 242 bits (122), Expect = 4e-62
Identities = 206/234 (88%)
Strand = Plus / Plus
Query: 107891 cccgagtagcacggagcccgtggaattccgtgtgaatcagcgaggaccacctcgtaaggc 107950
||||||||||| || || |||||||| |||||||||||||| |||||||||| |||||||
Sbjct: 377 cccgagtagcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgtaaggc 436
Query: 107951 taaatactcctgtgtgaccgatagagaaacagtaccgcgagggaaaggtgaaaagaaccc 108010
|||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 437 taaatactcctgggtgaccgatagcgaagtagtaccgtgagggaaaggtgaaaagaaccc 496
Query: 108011 cggaaggggagtgaaatagaacatgaaaccgttagcctacaagcaatgggaggacgattt 108070
| ||||||||||||||||||||||||||| ||| |||||| |||||||| |||
Sbjct: 497 ccatcggggagtgaaatagaacatgaaaccgtaagctcccaagcagtgggaggagaattg 556
Query: 108071 aacgtctgaccgtgtgcctgttgaagaatgagccggcgacttacaggctgtggc 108124
|| |||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct: 557 aatctctgaccgcgtgcctgttgaagaatgagccggcgacttataggcagtggc 610
Score = 224 bits (113), Expect = 9e-57
Identities = 182/205 (88%)
Strand = Plus / Plus
Query: 108460 ccagtgagacggtgggggataagcttcatcgtcgaaagggaaacagcccagaccaccagc 108519
|||||||||| |||||||||||||||||| ||||| |||| ||||||||||| |||||||
Sbjct: 968 ccagtgagacagtgggggataagcttcattgtcgagaggggaacagcccagatcaccagc 1027
Query: 108520 taaggtccccaaataaatactaagtgataaaggaggtgggagtgcatagacaaccaggag 108579
||||| ||| |||| | || |||| |||||||||| |||||||| ||||| |||||||
Sbjct: 1028 taaggcccctaaatgaccgctcagtggtaaaggaggtaggagtgcaaagacagccaggag 1087
Query: 108580 gtttgcctagaagcagcaatccttgaaagagtgcgtaatagctcactggtcaagcgctcc 108639
||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct: 1088 gtttgcctagaagcagccacccttgaaagagtgcgtaatagctcactgatcaagcgctct 1147
Query: 108640 tgcgccgaaaatgaacggggctaag 108664
||||||||| ||||| ||| |||||
Sbjct: 1148 tgcgccgaagatgaatgggactaag 1172
Score = 194 bits (98), Expect = 8e-48
Identities = 155/174 (89%)
Strand = Plus / Plus
Query: 108194 gacccgaacccgggtgatctaaccatggccaggataaagctagggtaataccttgtggag 108253
|||||||||| |||||||||| ||||| ||||||| ||||| |||| | || ||||||
Sbjct: 679 gacccgaacctgggtgatctatccatgaccaggatgaagcttgggtgaaactaagtggag 738
Query: 108254 gtccgaaccgacttctgttgaaaaaggagcggatgagctgtggttaggggtgaaatgcca 108313
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 739 gtccgaaccgactgatgttgaaaaatcagcggatgagttgtggttaggggtgaaatgcca 798
Query: 108314 atcgaacccggagctagctggttctccccgaaatgcgtttaggcgcagcggttg 108367
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 799 ctcgaacccagagctagctggttctccccgaaatgcgttgaggcgcagcagttg 852
>Oryz.sat_C Chloroplast Oryza sativa. 2981 bp
Length = 2981
Score = 622 bits (314), Expect = e-176
Identities = 432/470 (91%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 109806 gagtgcaaaggcagaagggagcttgactgcgagacaaacaagtcaagcagggacgaaagt 109865
|||||||||||||||||||||||||||||| |||| || ||| ||||| |||||||||
Sbjct: 2417 gagtgcaaaggcagaagggagcttgactgcaagactcacccgtcgagcagagacgaaagt 2476
Query: 109866 cggccttagtgatccgacggcaccgagtggaagggccgtcgctcaacggataaaagttac 109925
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 cggccttagtgatccgacggtgccgagtggaagggccgtcgctcaacggataaaagttac 2536
Query: 109926 tctagggataacaggctgatctcccccaagagttcatatcgacggggaggtttggcacct 109985
|||||||||||||||||||||| |||||||||| || ||||||||| |||||||||||||
Sbjct: 2537 tctagggataacaggctgatcttccccaagagtccacatcgacgggaaggtttggcacct 2596
Query: 109986 cgatgtcggctcatcgcagcctggggctgtagtaggtcccaagggttgggctgttcgccc 110045
|||||||||||| |||| ||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 2597 cgatgtcggctcttcgccacctggagctgtaggtggttccaagggttgggctgttcgccc 2656
Query: 110046 attaaagcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggt 110105
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 attaatgcggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccggt 2716
Query: 110106 gtaggcgtaagagcattgagaggagccttccttagtacgagaggaccgggaaggacgcac 110165
|| ||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 2717 gtgggcgttagagcattgagaggacctttccctagtacgagaggaccgggaaggacgcac 2776
Query: 110166 cgctggtgtacctgttatcgtgccaacggtaaacgcagggtagccaagtgcggagcggat 110225
| |||||||||| ||||||||| | ||||||||||| |||||||||||||||||| ||||
Sbjct: 2777 ctctggtgtaccagttatcgtg-ctacggtaaacgctgggtagccaagtgcggagaggat 2835
Query: 110226 aaccgctgaaagcatctaagtgggaagcccacctcaagatgattgctctc 110275
||| ||||||||||| ||||| | ||||||||| |||||||| |||||||
Sbjct: 2836 aactgctgaaagcatataagtagtaagcccaccccaagatgagtgctctc 2885
Score = 349 bits (176), Expect = 2e-94
Identities = 194/200 (97%)
Strand = Plus / Plus
Query: 109367 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 109426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 gcgaccgaagccccggtgaacggcggccgtaactataacggtcctaaggtagcgaaattc 2036
Query: 109427 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 109486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 cttgtcgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggaga 2096
Query: 109487 gaggctcggcgaaataggattgtctgtgaagatacggactacctgcacctggacagaaag 109546
||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2097 gagactcggtgaaatagacatgtctgtgaagatgcggactacctgcacctggacagaaag 2156
Query: 109547 accctatgaagctttactgt 109566
||||||||||||||||||||
Sbjct: 2157 accctatgaagctttactgt 2176
Score = 224 bits (113), Expect = 9e-57
Identities = 182/205 (88%)
Strand = Plus / Plus
Query: 108460 ccagtgagacggtgggggataagcttcatcgtcgaaagggaaacagcccagaccaccagc 108519
||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct: 979 ccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccggatcaccagc 1038
Query: 108520 taaggtccccaaataaatactaagtgataaaggaggtgggagtgcatagacaaccaggag 108579
||||| ||| |||| | || |||||||||||||||||| ||||| ||||| |||||||
Sbjct: 1039 taaggcccctaaatgaccgctcagtgataaaggaggtgggggtgcaaagacagccaggag 1098
Query: 108580 gtttgcctagaagcagcaatccttgaaagagtgcgtaatagctcactggtcaagcgctcc 108639
||||||||||||||||| | |||| ||||||||||||||||||||||| || ||||| |
Sbjct: 1099 gtttgcctagaagcagccaccctttaaagagtgcgtaatagctcactgatcgagcgccct 1158
Query: 108640 tgcgccgaaaatgaacggggctaag 108664
||||| ||| |||||||||||||||
Sbjct: 1159 tgcgctgaagatgaacggggctaag 1183
Database: /auto/database/rrna/23S.fasta
Posted date: Sep 7, 2000 6:22 AM
Number of letters in database: 1,019,713
Number of sequences in database: 1398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,232
Number of Sequences: 1398
Number of extensions: 204232
Number of successful extensions: 18007
Number of sequences better than 1.0e-40: 80
Number of HSP's better than 0.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16058
Number of HSP's gapped (non-prelim): 1777
length of query: 347,519
length of database: 1,019,713
effective HSP length: 19
effective length of query: 347,500
effective length of database: 993,151
effective search space: 345119972500
effective search space used: 345119972500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 87 (173.0 bits)
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