Transcription maps for chromosome 21/22 chips

The following are GFF-formatted annotations of probes detected as positive for each of the 11 cell lines. For each cell line, a few maps are provided.

The file names indicate the map type - a name of the form name.R.D.maxgap.minrun.map.gff is a map for cell line name with parameters R, D, maxgap and minrun, as defined in the publication.

Contig 4 of chromosome 21

Filename	size (bytes)	md5sum
A375.1.3-12.probes.gff.gz	8,065	4f7809bf2e033ef78fc2521e9137bfe6
A375.1.3-8.probes.gff.gz	12,679	fe0ef446b08d930b155837b1c045545a
A375.1.4-12.probes.gff.gz	7,235	03e6f580c9acbd5561b5ae3a144cd112
A375.1.4-8.probes.gff.gz	10,993	c65c58c76c8f01d8b4b82ca5cfcca8dc
A375.1.5-12.probes.gff.gz	6,401	778c0b6e56151e33bb8cde358fb4cf49
A375.1.5-8.probes.gff.gz	9,498	bf57f9ab6b91424f2be8a0088474cb7a
CEM.1.3-12.probes.gff.gz	16,607	f67fe232b582eca790dfd726ae61ace0
CEM.1.3-8.probes.gff.gz	20,799	106b0814dc85cb307b00ccff83328801
CEM.1.4-12.probes.gff.gz	13,919	e9cbbd76aafb4c912efee329c2d36c82
CEM.1.4-8.probes.gff.gz	17,179	018bd22f731f0e5d48d2a864b64f9a89
CEM.1.5-12.probes.gff.gz	11,796	e18ec1743e58b256ae4fd3ef11cb1c76
CEM.1.5-8.probes.gff.gz	14,397	6887c464d9601fb870d583b97c73804b
COLO.1.3-12.probes.gff.gz	16,268	f5200d28c4d6b74b3a0517198b3958c5
COLO.1.3-8.probes.gff.gz	20,192	8c5a1f11bf46fba78e952e7c4b27f2d9
COLO.1.4-12.probes.gff.gz	13,555	62703fa0766f68acfd4d45680f0122de
COLO.1.4-8.probes.gff.gz	16,635	6c92328c0b57ffd471e6c5161dfd8a89
COLO.1.5-12.probes.gff.gz	11,096	74b4c567d196d281eb8d6a7d76c578a6
COLO.1.5-8.probes.gff.gz	13,537	36400df8a62015b2de1e27fd0f5f9b01
combo.1.3-12.10-of-11.probes.gff.gz	3,341	1a7ef981936333a136bad4d35e936cec
combo.1.3-12.11-of-11.probes.gff.gz	1,917	c1cf6a53b8f1b91634e5e3304bafda2f
combo.1.3-12.1-of-11.probes.gff.gz	33,383	8287b9aeeeb94f2e159fb7f037eefe38
combo.1.3-12.2-of-11.probes.gff.gz	24,828	bdc32d5aaa4d8e3f6bf664d0bb4f5bfc
combo.1.3-12.3-of-11.probes.gff.gz	20,041	a6645625ef2823cdb3685d28ef414c0d
combo.1.3-12.4-of-11.probes.gff.gz	16,192	6122a09f2dda70fb63e259d11475e2ff
combo.1.3-12.5-of-11.probes.gff.gz	13,498	1deefb37f342810f7cfea9ef4afff278
combo.1.3-12.6-of-11.probes.gff.gz	11,028	d7489a1720a84a023eacc304d78dd613
combo.1.3-12.7-of-11.probes.gff.gz	8,842	c356fdacc0943c5e91ba5a3791e69d18
combo.1.3-12.8-of-11.probes.gff.gz	7,077	53567e236716c1bc5d0ef50371b5345b
combo.1.3-12.9-of-11.probes.gff.gz	5,164	458aab9d180863bf657362ba257ef6b3
combo.1.3-8.10-of-11.probes.gff.gz	5,301	b7e8da2b54c25605694b4ca17c1b9d63
combo.1.3-8.11-of-11.probes.gff.gz	3,066	bbd5468bc4af8c2fc50e49fa12042c1f
combo.1.3-8.1-of-11.probes.gff.gz	42,671	314172bbc2e41312bf3c168788bd1be1
combo.1.3-8.2-of-11.probes.gff.gz	31,883	c3fb8296c680b290a7ceb36095497ef4
combo.1.3-8.3-of-11.probes.gff.gz	26,075	2a9ff5a51606bed6a1f25de1032d4c47
combo.1.3-8.4-of-11.probes.gff.gz	21,464	3eb49bf7f0b13dba55261f3f6b12892c
combo.1.3-8.5-of-11.probes.gff.gz	18,036	3ca296bad7e46c31b7bf7f55f8bd403f
combo.1.3-8.6-of-11.probes.gff.gz	14,856	ae76e4d527ffc3d604f8b1e4a1f634c0
combo.1.3-8.7-of-11.probes.gff.gz	12,113	23d82486d323cbc15b9764119173e8cc
combo.1.3-8.8-of-11.probes.gff.gz	9,692	256192735b1427600b29b2f526f00bf0
combo.1.3-8.9-of-11.probes.gff.gz	7,534	3f704d23b3954daffe84ea2265b684c2
combo.1.4-12.10-of-11.probes.gff.gz	2,787	483c20afc55d8a00b124f0d14ffb8e38
combo.1.4-12.11-of-11.probes.gff.gz	1,671	873eb0126494b1d5bea4c9a61b45463c
combo.1.4-12.1-of-11.probes.gff.gz	29,998	68a1fe5079b0d389b96409d080db8d1b
combo.1.4-12.2-of-11.probes.gff.gz	21,850	0591060f151abc3a244a4880759ac414
combo.1.4-12.3-of-11.probes.gff.gz	17,107	b1bbd4b53b75ac61ab720ed5172224d4
combo.1.4-12.4-of-11.probes.gff.gz	13,656	1c95bee434d0c18b9c7fc65f803460d5
combo.1.4-12.5-of-11.probes.gff.gz	11,081	5d926e5a66da3d1ed596c0e4b695b6ca
combo.1.4-12.6-of-11.probes.gff.gz	9,096	17d2f608f18e1584e01aff17aaf2f6e4
combo.1.4-12.7-of-11.probes.gff.gz	7,233	21ea57015996e85c84f96b018202a983
combo.1.4-12.8-of-11.probes.gff.gz	5,808	6d68e8135607a46981a1c553512910f2
combo.1.4-12.9-of-11.probes.gff.gz	4,230	9d80f85e291c3f8d5cf145c7e7c13c3c
combo.1.4-8.10-of-11.probes.gff.gz	4,155	44e069c7d102df35077d337096122568
combo.1.4-8.11-of-11.probes.gff.gz	2,529	4ca493c3ace92e599a30faeffe8c4614
combo.1.4-8.1-of-11.probes.gff.gz	38,043	22dcda60e073f75d7fdad5aa3d1e7b4f
combo.1.4-8.2-of-11.probes.gff.gz	27,598	2437df16837b4dc5223e9eb5ea006b9a
combo.1.4-8.3-of-11.probes.gff.gz	22,040	ce9ff2870ec47a47e7de982affabb7d3
combo.1.4-8.4-of-11.probes.gff.gz	17,763	2cef3932f5fc069dfd3bc136dced16b2
combo.1.4-8.5-of-11.probes.gff.gz	14,680	4e5440252fce639da75f83a8efc111c5
combo.1.4-8.6-of-11.probes.gff.gz	11,948	e68ac3d39c5bd63385da51eb7a9308a4
combo.1.4-8.7-of-11.probes.gff.gz	9,574	7d8f655995e4af9096f49b7b7832fa3f
combo.1.4-8.8-of-11.probes.gff.gz	7,810	f4e17034b8da9fc2695ea8107212a92c
combo.1.4-8.9-of-11.probes.gff.gz	6,012	66b63ccd0b18321f9b76e748e232a54c
combo.1.5-12.10-of-11.probes.gff.gz	2,311	e5a730861fdc17441649d6fde2533831
combo.1.5-12.11-of-11.probes.gff.gz	1,332	86fc2ad4173213cf9323fc0cf4131659
combo.1.5-12.1-of-11.probes.gff.gz	26,651	24bbeb90dd9e03c9dfedda9e7c50303c
combo.1.5-12.2-of-11.probes.gff.gz	18,632	7348baa4c5c45f06131e0f2d93e16fa2
combo.1.5-12.3-of-11.probes.gff.gz	14,494	4d8b8bd365246f2e2c8c5dd0f1e3d0fe
combo.1.5-12.4-of-11.probes.gff.gz	11,326	caa7f3f90a825de77e916e90064a4771
combo.1.5-12.5-of-11.probes.gff.gz	9,128	130d42e1af4ecc6d14a37c8475b9bf4d
combo.1.5-12.6-of-11.probes.gff.gz	7,338	aad60d7ac6777750266b89c841cf202d
combo.1.5-12.7-of-11.probes.gff.gz	5,915	54d1c77f6d8c13735d26d4e1a60719c9
combo.1.5-12.8-of-11.probes.gff.gz	4,730	d3dbb2e1fe045e33d3b622a2b8692315
combo.1.5-12.9-of-11.probes.gff.gz	3,457	b745b8d3faeb0192c4556c8d39ec0f59
combo.1.5-8.10-of-11.probes.gff.gz	3,306	d4ee42e4dd08a389ef3f1e522eb06604
combo.1.5-8.11-of-11.probes.gff.gz	1,911	fe9e7efd2962a98a151dc54e748a341a
combo.1.5-8.1-of-11.probes.gff.gz	33,622	293a47577e51334794e36ceeb68ffaac
combo.1.5-8.2-of-11.probes.gff.gz	23,412	a5aac02af7436b574908e38847ca7ce4
combo.1.5-8.3-of-11.probes.gff.gz	18,349	6cbb207cba27bb8ff813896d4a69cd03
combo.1.5-8.4-of-11.probes.gff.gz	14,614	247661b55a604e3b69cf0da3a571b583
combo.1.5-8.5-of-11.probes.gff.gz	11,882	fcb18bc37bc56194dc3561af9823adf7
combo.1.5-8.6-of-11.probes.gff.gz	9,626	679fe654e839d8731b34e58df83d3c0c
combo.1.5-8.7-of-11.probes.gff.gz	7,687	a346ae49c2d1653cecea4cacd1cd827a
combo.1.5-8.8-of-11.probes.gff.gz	6,193	1a91ac40f4c797e278ce644c06ff8bde
combo.1.5-8.9-of-11.probes.gff.gz	4,681	f6e05edbb9623217dd014b90e3188a80
FHS.1.3-12.probes.gff.gz	9,945	1197b4a8fc0566453a3f0b93e87cee2a
FHS.1.3-8.probes.gff.gz	14,357	f6e653b3cb4092d24f13a4339ad87fe0
FHS.1.4-12.probes.gff.gz	8,758	3e23f1d54c8c95ca1274b07b5433225a
FHS.1.4-8.probes.gff.gz	12,198	d4bc46a21d6f6fd615db99c4af43b014
FHS.1.5-12.probes.gff.gz	7,581	27dafb6efaf9d7dc81a129f87103cc58
FHS.1.5-8.probes.gff.gz	10,172	52581ae8f66e700198cca574d31b1f6e
HEP.1.3-12.probes.gff.gz	14,680	4bfff145bb621417c4be0a401a767dc4
HEP.1.3-8.probes.gff.gz	19,171	ade1849dada5d6a429c4da21a5f20e96
HEP.1.4-12.probes.gff.gz	12,540	74f8bb5abb96cfd66842a8b31b2668e7
HEP.1.4-8.probes.gff.gz	16,091	f42819f8fa96a286f13b7ec086dfbda6
HEP.1.5-12.probes.gff.gz	10,576	8a6a32c0d09ea83e46f90cb1ca402d80
HEP.1.5-8.probes.gff.gz	13,332	5fb5cca7ded1ab3fc188228c037b3784
Jurkat.1.3-12.probes.gff.gz	10,166	67928b462fc3513704307c1b1a958436
Jurkat.1.3-8.probes.gff.gz	14,864	f3d7c9d7b22ec8c2ae560e3eb1072a4d
Jurkat.1.4-12.probes.gff.gz	9,126	eefd7268e8f94918920153b45dbaab52
Jurkat.1.4-8.probes.gff.gz	13,054	962387c1d465c5f42c5b3a63c5e19897
Jurkat.1.5-12.probes.gff.gz	8,199	07c490fe73f25947a323063834136113
Jurkat.1.5-8.probes.gff.gz	11,490	41eef489f0cd923a77c4dab631a08827
NCCIT.1.3-12.probes.gff.gz	14,207	b5a556417beb1188f184f4f9fbbfbeef
NCCIT.1.3-8.probes.gff.gz	18,412	b6fa4b9f604c529234cb6b1e66da6795
NCCIT.1.4-12.probes.gff.gz	12,049	1029c2821fd00a3776ef4222cf4fac0f
NCCIT.1.4-8.probes.gff.gz	15,288	e85f0527d89209472751ad763d00a3ea
NCCIT.1.5-12.probes.gff.gz	9,956	a912e473cb6ed001b2f02835bc8c1432
NCCIT.1.5-8.probes.gff.gz	12,448	4f72289816eb36a87c70524ee6056f75
SK.new.1.3-12.probes.gff.gz	9,488	33f186df4050820c8ec8207e1059381e
SK.new.1.3-8.probes.gff.gz	14,291	81fc605520527692fa82baedacfd3a39
SK.new.1.4-12.probes.gff.gz	8,670	f7b345b767cb1ba329dab3f5e975b9ee
SK.new.1.4-8.probes.gff.gz	12,777	f889e97aa9d82015d73420e633e66911
SK.new.1.5-12.probes.gff.gz	7,731	42d42b22a5d1ad54f6365721778ff068
SK.new.1.5-8.probes.gff.gz	11,151	6c91658b20b1ab5b9e29c13d86bd72c3
OVCAR.1.3-12.probes.gff.gz	15,561	134153acdbe5aca1f17ea1e1e66347d1
OVCAR.1.3-8.probes.gff.gz	19,994	4b715c749251b2bbac6f92f81faa25b6
OVCAR.1.4-12.probes.gff.gz	13,470	c742e884c4e72d304c48137f8e860b43
OVCAR.1.4-8.probes.gff.gz	16,870	65b76086cc0d441ab7c48154c6be58fa
OVCAR.1.5-12.probes.gff.gz	11,354	e0fb6b6e2be9a8b0b00c5e3020a7a7b5
OVCAR.1.5-8.probes.gff.gz	14,098	8308b608ebbdb229771f27b94dd01bff
PC3.1.3-12.probes.gff.gz	15,693	ca8554a4e8d6e16eb4f97b3930c095d3
PC3.1.3-8.probes.gff.gz	19,437	b940a191410b32e79a552524db3b4bda
PC3.1.4-12.probes.gff.gz	13,066	e9667e333ca5b5b8c6a9f8aa78894ac6
PC3.1.4-8.probes.gff.gz	15,945	1678978be80cfe2409c31c6fdfb57bfb
PC3.1.5-12.probes.gff.gz	10,582	d9017f0280bd0b47908b5cba161c50db
PC3.1.5-8.probes.gff.gz	12,696	2bfd883068f9e4c2770cec80d4c3256b
U87.1.3-12.probes.gff.gz	15,549	b1bc10bd1d0979d90a781265acdd76fc
U87.1.3-8.probes.gff.gz	19,635	afd09e146f2ba7f704e0ab840b9c6cc6
U87.1.4-12.probes.gff.gz	13,036	22e531173f4f0546a5a02ef4f92b7645
U87.1.4-8.probes.gff.gz	16,213	5ba745052b2d6a929695ecd0aeb7f3b9
U87.1.5-12.probes.gff.gz	10,809	86de54f62b2be297aa01b1a9a7837b83
U87.1.5-8.probes.gff.gz	13,316	dc4aa22f3666e011e5453c0ccd62a63b