Transcription maps for chromosome 21/22 chips

The following are GFF-formatted annotations of probes detected as positive for each of the 11 cell lines. For each cell line, a few maps are provided.

The file names indicate the map type - a name of the form name.R.D.maxgap.minrun.map.gff is a map for cell line name with parameters R, D, maxgap and minrun, as defined in the publication.

Contig 7 of chromosome 22

Filename	size (bytes)	md5sum
A375.1.3-12.probes.gff.gz	16,360	f0186944ddbba21db148a50de6df9c8e
A375.1.3-8.probes.gff.gz	24,220	d2036bafc3a80e3efe1f52d3d58db7a1
A375.1.4-12.probes.gff.gz	14,493	03b51ba755892e63bedb68c1333dfca7
A375.1.4-8.probes.gff.gz	20,896	811dfebe2cd89efbc2d78285d2d92849
A375.1.5-12.probes.gff.gz	13,022	8c922af05e037e40176191848a1b9764
A375.1.5-8.probes.gff.gz	18,274	f0e8da595f26dd0ea095f511457f0c2c
CEM.1.3-12.probes.gff.gz	26,083	605e76c9dcc2c12162802bf93c8e9a6d
CEM.1.3-8.probes.gff.gz	33,670	011c819736307edf8c92e3c8da20c490
CEM.1.4-12.probes.gff.gz	21,514	c25ca51ced70ca0de81e681d0405b94a
CEM.1.4-8.probes.gff.gz	27,218	eda1693f69856dcaf0a71624c26e3281
CEM.1.5-12.probes.gff.gz	17,874	040dec20a38c82a644f983c99dd3b424
CEM.1.5-8.probes.gff.gz	22,355	8cdc91b7f8929b805b1d001e95c30021
COLO.1.3-12.probes.gff.gz	28,449	9167ec9f6111342b4d1a13dd59488b42
COLO.1.3-8.probes.gff.gz	34,518	723b937ca5b925a5d68ff47876ced00c
COLO.1.4-12.probes.gff.gz	23,240	01419ba52e89b594ef0effca9509a47d
COLO.1.4-8.probes.gff.gz	27,633	2ed520a3e44e9f82963c82e140bbef63
COLO.1.5-12.probes.gff.gz	18,846	d100b28bf02d1812fe944d603cc7a695
COLO.1.5-8.probes.gff.gz	22,229	848f0ffd573a87fc825a4c5d85475348
combo.1.3-12.10-of-11.probes.gff.gz	5,134	4f39a74edb225b8347d3b5de0f7daba1
combo.1.3-12.11-of-11.probes.gff.gz	2,837	4874de641a56729b40c0d00cefaae382
combo.1.3-12.1-of-11.probes.gff.gz	56,934	8dcefc0cf28a4d900bc9d9563ba525b5
combo.1.3-12.2-of-11.probes.gff.gz	41,621	69400e1e7909d87c59b55992d29329be
combo.1.3-12.3-of-11.probes.gff.gz	33,193	741a6a92b5dc52cc580f130200845eab
combo.1.3-12.4-of-11.probes.gff.gz	26,903	1167fb13a7bdb873ff04864f65baf184
combo.1.3-12.5-of-11.probes.gff.gz	21,840	5e96c695b4de17cc318aaff13ad34080
combo.1.3-12.6-of-11.probes.gff.gz	17,553	9b156d8935ce33c9348fed0924cd1f95
combo.1.3-12.7-of-11.probes.gff.gz	13,955	e633c6b142098617b37a71bcadb71d2c
combo.1.3-12.8-of-11.probes.gff.gz	10,736	db1cf3a444f7b0897a1a8ed3dd36f33a
combo.1.3-12.9-of-11.probes.gff.gz	7,711	53df33cc76d233c56f96b92ea854134a
combo.1.3-8.10-of-11.probes.gff.gz	8,145	620536a496e181f89c4e5b12fe96a4cb
combo.1.3-8.11-of-11.probes.gff.gz	4,502	017a2ab996b398f3cc956b05cc98157a
combo.1.3-8.1-of-11.probes.gff.gz	73,108	41bcad9737f4a18ea4f0076df091088a
combo.1.3-8.2-of-11.probes.gff.gz	53,304	a4be93257fd8245176a7797af38b3e88
combo.1.3-8.3-of-11.probes.gff.gz	43,220	8c7d3a69a6b064d88d83b2e2795ab6a6
combo.1.3-8.4-of-11.probes.gff.gz	35,004	c5d907f1361eba794d87d6670375da9f
combo.1.3-8.5-of-11.probes.gff.gz	29,108	8794f6b4887c9a6fcad8e34d2fd355f8
combo.1.3-8.6-of-11.probes.gff.gz	23,999	81198a89c02d98564d00273710562177
combo.1.3-8.7-of-11.probes.gff.gz	19,391	ed5dcd70b7aae56d9b4eae5d06264877
combo.1.3-8.8-of-11.probes.gff.gz	15,569	c1b9a1750ce286a1116468d407bfd8ef
combo.1.3-8.9-of-11.probes.gff.gz	11,697	1642d2e9f322be2ddc223e37284e8d5c
combo.1.4-12.10-of-11.probes.gff.gz	4,306	0cfea3447e30dc3a76227fa79dcfbf8a
combo.1.4-12.11-of-11.probes.gff.gz	2,334	f2361df24f2d365dba1eba6e8d711ab6
combo.1.4-12.1-of-11.probes.gff.gz	50,416	3287c6a1547fd446a661ec19de167f89
combo.1.4-12.2-of-11.probes.gff.gz	35,858	02ed4e8596897b99e8490b8204eabdaf
combo.1.4-12.3-of-11.probes.gff.gz	28,310	4ed7fb60b02515ca5c051bf783a8a47d
combo.1.4-12.4-of-11.probes.gff.gz	22,366	7b124c277259e548c3d20624e6152547
combo.1.4-12.5-of-11.probes.gff.gz	17,965	287b1956cd7e6de87faf03b02e5b4847
combo.1.4-12.6-of-11.probes.gff.gz	14,375	af59d68260579f7c35212f50e7fc957d
combo.1.4-12.7-of-11.probes.gff.gz	11,339	1707434dac160129d18cc7d9ee8a3d08
combo.1.4-12.8-of-11.probes.gff.gz	8,694	cd359fd0a61b3c448e37dd255f1469d7
combo.1.4-12.9-of-11.probes.gff.gz	6,285	2618ce23f698617a9f1ebc347355c6a3
combo.1.4-8.10-of-11.probes.gff.gz	6,419	eaf7aff7e0d0b7461f5a0c215c5d49ba
combo.1.4-8.11-of-11.probes.gff.gz	3,498	f13cb35a57849015dd64d1af0b5a3e70
combo.1.4-8.1-of-11.probes.gff.gz	64,550	762fbec9ec8bc9cd82835e6d196063b7
combo.1.4-8.2-of-11.probes.gff.gz	45,515	a79a42f445699c9a079c559e0dadcf72
combo.1.4-8.3-of-11.probes.gff.gz	36,084	ed6309ca0303eb87a27beae8e3191e4b
combo.1.4-8.4-of-11.probes.gff.gz	28,731	85b61f7cac3383b1daa0977028958e9b
combo.1.4-8.5-of-11.probes.gff.gz	23,489	f900f907c81abc66973d6291aaaa95a2
combo.1.4-8.6-of-11.probes.gff.gz	19,111	75a4cc0057af98ad57fa70621ec337cc
combo.1.4-8.7-of-11.probes.gff.gz	15,402	faca359c892b2eeb9d8e9a850f1b0788
combo.1.4-8.8-of-11.probes.gff.gz	12,227	4614b0e1e0632274e7b6c27afd79d7e2
combo.1.4-8.9-of-11.probes.gff.gz	9,141	5026db28e0518e1fdfd0b558a37479cf
combo.1.5-12.10-of-11.probes.gff.gz	3,480	2609e16ba87fd3b51f79f7805d9a93c4
combo.1.5-12.11-of-11.probes.gff.gz	1,985	19e632851b5bcdfea6ecb68fa62f4b47
combo.1.5-12.1-of-11.probes.gff.gz	44,398	e6f6c6f41c0ac49721ad098ba16fe0db
combo.1.5-12.2-of-11.probes.gff.gz	30,784	76e0eec0a066f7a7be56cf7d95a592ca
combo.1.5-12.3-of-11.probes.gff.gz	23,698	38f8aa48e4d63add2017b278844dd5c9
combo.1.5-12.4-of-11.probes.gff.gz	18,322	3db14b16ad4a7e3cdaa36c91e887c10f
combo.1.5-12.5-of-11.probes.gff.gz	14,544	13b046af03fdba51fbc7d90f900ce207
combo.1.5-12.6-of-11.probes.gff.gz	11,705	61f975a783892cf1429a5a03f10c9c4d
combo.1.5-12.7-of-11.probes.gff.gz	9,253	b437bf108ba988eaa3702e313223bcbf
combo.1.5-12.8-of-11.probes.gff.gz	6,998	187d43d654e421a4b98541d622ec50dd
combo.1.5-12.9-of-11.probes.gff.gz	5,173	b202e9cf6372347b2a4d7451f979aa75
combo.1.5-8.10-of-11.probes.gff.gz	5,026	82ff0ea96643b2547efbfd44a21100d1
combo.1.5-8.11-of-11.probes.gff.gz	2,823	0d98dde96f07bce2ade1951cdb2bab5f
combo.1.5-8.1-of-11.probes.gff.gz	56,465	9dfb742d07a4ce80e7fa608e047335b9
combo.1.5-8.2-of-11.probes.gff.gz	38,715	b816960ebb78099b3fcd52895104c44d
combo.1.5-8.3-of-11.probes.gff.gz	30,099	248451200d2a65d6ca0cd4e9b3cef0e5
combo.1.5-8.4-of-11.probes.gff.gz	23,475	467488c083ef9785ed425f88f238b6a3
combo.1.5-8.5-of-11.probes.gff.gz	18,729	87182cd2ac835c79d6bc884676a1acc6
combo.1.5-8.6-of-11.probes.gff.gz	15,209	907e7e8a6f289ae0688496fef7e420d0
combo.1.5-8.7-of-11.probes.gff.gz	12,171	8af528b7186c7ca1894e2d3935065207
combo.1.5-8.8-of-11.probes.gff.gz	9,539	17d11e31f069a4a0e83430d6ca00fe2b
combo.1.5-8.9-of-11.probes.gff.gz	7,268	7c2c4e32abee8d3834976cb5b6bec041
FHS.1.3-12.probes.gff.gz	17,381	008352e097631a736f67452b1a3ac085
FHS.1.3-8.probes.gff.gz	25,137	a60df4faf93992ec3229c48b477b9b74
FHS.1.4-12.probes.gff.gz	15,479	7f614c07196cb04a0a6b7302c573b069
FHS.1.4-8.probes.gff.gz	21,756	81b9acc83d84e3f9001bee5801f06f91
FHS.1.5-12.probes.gff.gz	13,388	d4b406984aa97b94cd2d7f0075ff81ea
FHS.1.5-8.probes.gff.gz	18,360	b324f540355b8051377509e1e10c762e
HEP.1.3-12.probes.gff.gz	21,935	f558908b2b8e8e4721e4a91bd87a3c4f
HEP.1.3-8.probes.gff.gz	29,642	411b8c0e0bde2240fb13b393c6076593
HEP.1.4-12.probes.gff.gz	19,050	30bb9900948cbe5c62dd201493f6d611
HEP.1.4-8.probes.gff.gz	25,142	492162a0d7d959da5c6dbbbacf8b659b
HEP.1.5-12.probes.gff.gz	16,069	01bc49eac72168eddabe8cdac65dc3de
HEP.1.5-8.probes.gff.gz	20,907	3cd3336eac9781818adc9b512b69c3c5
Jurkat.1.3-12.probes.gff.gz	16,892	367dd855df50484eee313a8988951e6d
Jurkat.1.3-8.probes.gff.gz	25,355	dc3c054b8db41002af428eecc418110f
Jurkat.1.4-12.probes.gff.gz	15,091	d81d03b696a027092713769b66420ea3
Jurkat.1.4-8.probes.gff.gz	21,963	c99bdc8535161fb5328e4d1a8394b7ea
Jurkat.1.5-12.probes.gff.gz	13,477	139aab16e8f7d3007b9986c8486cbfab
Jurkat.1.5-8.probes.gff.gz	19,223	7dcf0b837515f0683439985cf75972b6
NCCIT.1.3-12.probes.gff.gz	17,955	fc749ee5c5dfeb7317c959b251ad6784
NCCIT.1.3-8.probes.gff.gz	25,712	efc7b0d4563d390906be2c7f04046d07
NCCIT.1.4-12.probes.gff.gz	15,538	a2ca4d1feabd3b9f44319ff1a7c75eca
NCCIT.1.4-8.probes.gff.gz	21,733	c6f47f8514cdb69dca6221a02c75eb35
NCCIT.1.5-12.probes.gff.gz	13,154	e03e70da32dd8e13140bd181ceefde96
NCCIT.1.5-8.probes.gff.gz	18,078	c0f2eb5ae5a004082d63888a24911029
SK.new.1.3-12.probes.gff.gz	11,630	84b97eac8e8cbf08aaac0710f1e3e118
SK.new.1.3-8.probes.gff.gz	18,159	378fbe83891c4ade3ca551b642947cd8
SK.new.1.4-12.probes.gff.gz	10,411	6a315ee7adb5a7fc19c09d1a0f42b552
SK.new.1.4-8.probes.gff.gz	16,037	577d22a439c43b36aa6e3d13b82d9cf8
SK.new.1.5-12.probes.gff.gz	9,403	96cdb5093fcd7afb0e0d0f8625b06444
SK.new.1.5-8.probes.gff.gz	14,171	899516f707706398b77b057a324cecf1
OVCAR.1.3-12.probes.gff.gz	22,095	97203b48badfd1a0ef5d30548043e6ea
OVCAR.1.3-8.probes.gff.gz	30,044	2cb617cb7d94a2dff881840a193d3037
OVCAR.1.4-12.probes.gff.gz	19,301	0cc0a491419e8de103bbaff200b62ae2
OVCAR.1.4-8.probes.gff.gz	25,625	7c88be760b8f075f19ba5d74b19e64a8
OVCAR.1.5-12.probes.gff.gz	16,374	faccc4cb74c88452d039cacbae60090e
OVCAR.1.5-8.probes.gff.gz	21,313	098251d3bd31e7c32644d2537990ddcc
PC3.1.3-12.probes.gff.gz	30,394	4366b66c73c8e6b68b0da61a12fa3f0e
PC3.1.3-8.probes.gff.gz	35,926	1e8d30bd571a390ccd91baccee471b11
PC3.1.4-12.probes.gff.gz	24,288	c8d1c750261e999b62a402b029d46c2d
PC3.1.4-8.probes.gff.gz	28,559	d5460ac93622c672bde03fc732b266ce
PC3.1.5-12.probes.gff.gz	19,498	9491c6bad6ebed8449a7f81ddbca5954
PC3.1.5-8.probes.gff.gz	22,709	d2b0433816c5157b25f8cee7aefd9945
U87.1.3-12.probes.gff.gz	31,404	2e946e7ce65dca36a6da8be6175e4562
U87.1.3-8.probes.gff.gz	37,744	faf4f4a8d7ee99a2aea2fcf2a386db7d
U87.1.4-12.probes.gff.gz	25,818	52463d160df8c9dfd187debf3cbef88f
U87.1.4-8.probes.gff.gz	30,459	dea0d388b519cf8675aa0fd027742780
U87.1.5-12.probes.gff.gz	21,112	4d5b47dffb8142aed66a69a01dce08f5
U87.1.5-8.probes.gff.gz	24,641	bb0949d8a52c888a28ca06a7251fe6ff