Protocadherin 11 Y-linked (PCDH11Y)

NCBI

UniGene
Homepage
FAQs
Query Tips
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
dbEST
Trace Archive

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:2730626 UniGene Hs.661308 Homo sapiens (human) PCDH11Y

Links

Protocadherin 11 Y-linked (PCDH11Y)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_116755.1	protocadherin 11 Y-linked isoform c	H. sapiens	100.0	1339
NP_001074854.1	protocadherin 11 X-linked	M. musculus	84.8	1331
XP_001343511.1	PREDICTED: similar to protocadherin 9	D. rerio	57.1	1005

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	cDNA Sources:	brain; testis; bone; uncharacterized tissue

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	Y
Map position:	Yp11.2
UniSTS entry:	Chr Y	(n/a)
UniSTS entry:	Chr Y	sY3084
UniSTS entry:	Chr Y	SHGC-100227
UniSTS entry:	Chr Y	RH65271
UniSTS entry:	Chr Y	sY3123
UniSTS entry:	Chr Y	GDB:434012
UniSTS entry:	Chr Y	L17705
UniSTS entry:	Chr Y	SHGC-53941
UniSTS entry:	Chr Y	D11S2921
UniSTS entry:	Chr Y	L17877

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (20)

AJ564971.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 11.2	P
AJ564970.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 11.1	P
AJ564969.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 11	P
AJ564967.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 9.1	P
AJ564966.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 9	P
AJ564964.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 6
AJ564958.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 4	P
AJ564956.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 2
AJ564950.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 1a.1
AJ564937.1	Homo sapiens mRNA for protocadherin (PCDHX gene), exon 6
AJ564948.1	Homo sapiens mRNA for protocadherin (PCDHY gene), exon 1
AJ276803.1	Homo sapiens mRNA for protocadherin (PCDHY gene)	P
AF332217.1	Homo sapiens chromosome Y protocadherin 11 (PCDH11) mRNA, complete cds, alternatively spliced	P
AF332216.1	Homo sapiens chromosome Y protocadherin 11 (PCDH11) mRNA, complete cds, alternatively spliced	P
NM_032973.1	Homo sapiens protocadherin 11 Y-linked (PCDH11Y), transcript variant c, mRNA	PA
NM_032972.1	Homo sapiens protocadherin 11 Y-linked (PCDH11Y), transcript variant b, mRNA	P
NM_032971.1	Homo sapiens protocadherin 11 Y-linked (PCDH11Y), transcript variant a, mRNA	P
AF277053.1	Homo sapiens protocadherin-PC mRNA, complete cds	PA
AK289676.1	Homo sapiens cDNA FLJ76645 partial cds, highly similar to Homo sapiens protocadherin 11 Y-linked (PCDH11Y), transcript variant a, mRNA	P
AL831904.1	Homo sapiens mRNA; cDNA DKFZp547F039 (from clone DKFZp547F039)	A

EST sequences (6)

DN991181.1	Clone TC102191	brain	5' read	P
DN992873.1	Clone TC110393	brain	5' read
DA186759.1	Clone BRAMY3006845	brain	5' read	P
AA224524.1	Clone IMAGE:663609	testis	5' read	P
AA730407.1	Clone IMAGE:1249270	bone
AA865592.1	Clone IMAGE:1470173	uncharacterized tissue	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria