BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_1978 leucine-rich protein
(282 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_269943.1| leucine-rich protein [Streptococcus pyogen... 577 e-163
ref|YP_599361.1| Leucine rich protein [Streptococcus pyogen... 572 e-161
ref|YP_001129173.1| leucine-rich protein [Streptococcus pyo... 571 e-161
ref|YP_061009.1| Leucine rich protein [Streptococcus pyogen... 570 e-161
ref|YP_281136.1| leucine rich protein [Streptococcus pyogen... 569 e-161
ref|NP_608017.1| leucine-rich protein [Streptococcus pyogen... 567 e-160
ref|YP_597417.1| leucine rich protein [Streptococcus pyogen... 564 e-159
ref|NP_802961.1| putative leucine-rich protein [Streptococc... 559 e-158
ref|YP_603271.1| Leucine rich protein [Streptococcus pyogen... 558 e-157
ref|NP_665501.1| leucine-rich protein [Streptococcus pyogen... 558 e-157
sp|Q54087|LRPR_STREQ Leucine-rich protein >gi|407878|emb|CA... 532 e-149
ref|ZP_00788515.1| helix-turn-helix domain protein, fis-typ... 195 3e-48
ref|ZP_00784640.1| helix-turn-helix domain protein, fis-typ... 194 4e-48
ref|NP_688915.1| helix-turn-helix domain protein, fis-type ... 194 6e-48
ref|YP_330480.1| DNA-binding protein, Fis family [Streptoco... 193 1e-47
ref|ZP_00782161.1| helix-turn-helix domain protein, fis-typ... 191 7e-47
ref|ZP_02919913.1| hypothetical protein STRINF_00772 [Strep... 179 1e-43
ref|ZP_02722378.1| leucine-rich protein [Streptococcus pneu... 140 1e-31
ref|ZP_01820357.1| leucine-rich protein [Streptococcus pneu... 140 1e-31
ref|ZP_01825738.1| hypothetical protein CGSSp11BS70_03676 [... 139 2e-31
ref|ZP_02716896.1| leucine-rich protein [Streptococcus pneu... 139 2e-31
ref|ZP_02710216.1| leucine-rich protein [Streptococcus pneu... 139 2e-31
ref|NP_345106.1| leucine-rich protein [Streptococcus pneumo... 139 3e-31
ref|ZP_01832158.1| hypothetical protein CGSSp19BS75_05512 [... 138 5e-31
ref|NP_358115.1| hypothetical protein spr0521 [Streptococcu... 137 6e-31
ref|ZP_02712480.1| leucine-rich protein [Streptococcus pneu... 137 6e-31
ref|YP_001035964.1| Leucine-rich protein, putative [Strepto... 129 3e-28
ref|ZP_00875824.1| Helix-turn-helix, Fis-type [Streptococcu... 123 1e-26
ref|YP_001449670.1| leucine-rich protein [Streptococcus gor... 117 8e-25
ref|YP_001199274.1| Regulator of polyketide synthase expres... 105 4e-21
ref|YP_001201468.1| Regulator of polyketide synthase expres... 105 4e-21
ref|NP_815868.1| DNA-binding protein, Fis family [Enterococ... 100 1e-19
ref|ZP_02186037.1| DNA-binding protein, Fis family [Carnoba... 86 2e-15
ref|ZP_01941684.1| hypothetical protein LMRG_01969 [Listeri... 78 6e-13
ref|NP_466249.1| hypothetical protein lmo2727 [Listeria mon... 78 6e-13
ref|ZP_02278347.1| hypothetical protein LmonFS_17155 [Liste... 78 9e-13
ref|NP_786843.1| regulator [Lactobacillus plantarum WCFS1] ... 77 1e-12
ref|ZP_00230138.1| conserved hypothetical protein [Listeria... 77 1e-12
ref|ZP_00233143.1| conserved hypothetical protein [Listeria... 77 1e-12
ref|ZP_02310271.1| hypothetical protein LmonocytFSL_22448 [... 77 2e-12
ref|YP_850877.1| hypothetical protein lwe2680 [Listeria wel... 77 2e-12
ref|ZP_01931294.1| hypothetical protein LMIG_00145 [Listeri... 76 2e-12
ref|ZP_02688897.1| hypothetical protein LmonFSL_17104 [List... 75 3e-12
ref|NP_472203.1| hypothetical protein lin2875 [Listeria inn... 72 3e-11
ref|ZP_01170673.1| hypothetical protein B14911_15357 [Bacil... 65 4e-09
ref|ZP_00603322.1| Helix-turn-helix, Fis-type [Enterococcus... 65 5e-09
ref|ZP_01861709.1| hypothetical protein BSG1_09903 [Bacillu... 65 5e-09
ref|NP_391761.1| hypothetical protein BSU38820 [Bacillus su... 65 7e-09
ref|ZP_02321421.1| hypothetical protein LmonocytoFSL_18686 ... 64 8e-09
ref|ZP_02913994.1| putative transcriptional regulator, PucR... 64 9e-09
ref|ZP_02252527.1| hypothetical protein BcerAH_02510 [Bacil... 64 9e-09
ref|ZP_02290664.1| hypothetical protein LmonocyFSL_20761 [L... 64 1e-08
ref|ZP_02288143.1| hypothetical protein LmonocFSL_21886 [Li... 64 1e-08
ref|ZP_02283654.1| hypothetical protein LmonL_24353 [Lister... 64 2e-08
gb|AAC62410.1| leucine-rich protein transcriptional regulat... 63 3e-08
ref|YP_001423165.1| YxkF [Bacillus amyloliquefaciens FZB42]... 62 5e-08
ref|YP_083228.1| hypothetical protein BCZK1633 [Bacillus ce... 61 1e-07
ref|NP_978214.1| fis-type helix-turn-helix domain protein [... 60 1e-07
ref|ZP_01697006.1| hypothetical proteins-like [Bacillus coa... 58 6e-07
ref|NP_242007.1| hypothetical protein BH1141 [Bacillus halo... 55 5e-06
ref|ZP_02850655.1| putative transcriptional regulator, PucR... 55 6e-06
ref|YP_175011.1| regulator of polyketide synthase expressio... 55 7e-06
ref|NP_692056.1| hypothetical protein OB1135 [Oceanobacillu... 51 7e-05
ref|NP_266971.1| hypothetical protein L26721 [Lactococcus l... 51 7e-05
ref|YP_001813177.1| putative transcriptional regulator, Puc... 51 8e-05
ref|YP_001033015.1| putative regulator [Lactococcus lactis ... 51 9e-05
ref|YP_146485.1| hypothetical protein GK0632 [Geobacillus k... 50 2e-04
ref|ZP_01722136.1| hypothetical protein BB14905_16920 [Baci... 50 3e-04
ref|ZP_01995010.1| hypothetical protein DORLON_01001 [Dorea... 49 3e-04
ref|YP_078256.1| hypothetical protein with helix-turn-helix... 49 4e-04
ref|YP_001664562.1| transcriptional regulator, CdaR [Thermo... 49 4e-04
ref|YP_808846.1| Regulator of polyketide synthase expressio... 49 4e-04
ref|ZP_02691785.1| transcriptional regulator, CdaR [Epulopi... 48 6e-04
ref|YP_001124671.1| Leucine-rich protein transcriptional re... 48 7e-04
ref|ZP_00970385.1| COG3835: Sugar diacid utilization regula... 47 0.001
ref|YP_001488836.1| sugar diacid utilization regulator [Bac... 47 0.001
ref|NP_349831.1| Possible transcriptional regulator from YA... 47 0.001
ref|ZP_02138518.1| carbohydrate diacid regulator [Vibrio fi... 47 0.002
ref|ZP_02329052.1| transcriptional regulator, CdaR [Paeniba... 47 0.002
ref|ZP_01870723.1| putative sugar diacid utilization regula... 47 0.002
ref|NP_249741.1| hypothetical protein PA1050 [Pseudomonas a... 47 0.002
ref|YP_395325.1| hypothetical protein LSA0710 [Lactobacillu... 47 0.002
ref|NP_623553.1| Regulator of polyketide synthase expressio... 47 0.002
ref|ZP_02037848.1| hypothetical protein BACCAP_03467 [Bacte... 46 0.003
ref|ZP_02992175.1| putative transcriptional regulator, PucR... 46 0.003
ref|YP_001038275.1| transcriptional regulator, CdaR [Clostr... 46 0.003
ref|ZP_01996881.1| hypothetical protein DORLON_02906 [Dorea... 45 0.004
ref|YP_001560696.1| transcriptional regulator, CdaR [Clostr... 45 0.005
ref|ZP_02433765.1| hypothetical protein CLOSCI_04050 [Clost... 45 0.005
ref|ZP_02235623.1| hypothetical protein DORFOR_02509 [Dorea... 45 0.005
ref|ZP_02026208.1| hypothetical protein EUBVEN_01464 [Eubac... 45 0.005
ref|YP_001697532.1| hypothetical protein Bsph_1808 [Lysinib... 45 0.006
ref|ZP_02205628.1| hypothetical protein COPEUT_00390 [Copro... 45 0.006
ref|ZP_02432440.1| hypothetical protein CLOSCI_02686 [Clost... 45 0.007
ref|YP_001181114.1| transcriptional regulator, CdaR [Caldic... 45 0.007
ref|ZP_01966516.1| hypothetical protein RUMTOR_00054 [Rumin... 45 0.007
ref|ZP_02039393.1| hypothetical protein RUMGNA_00146 [Rumin... 45 0.007
ref|ZP_02169927.1| putative transcriptional regulator, PucR... 45 0.007
ref|YP_001311414.1| transcriptional regulator, PucR family ... 45 0.008
ref|ZP_01575893.1| transcriptional regulator, CdaR [Clostri... 45 0.008
gb|AAL00942.1|AF401662_1 putative leucine-rich transcriptio... 45 0.008
ref|YP_001308002.1| putative transcriptional regulator, Puc... 45 0.008
ref|YP_001502558.1| transcriptional regulator, CdaR [Shewan... 45 0.008
ref|YP_077298.1| Putative sugar diacid recognition protein ... 44 0.009
ref|ZP_02420634.1| hypothetical protein ANACAC_03251 [Anaer... 44 0.010
ref|YP_001675001.1| transcriptional regulator, CdaR [Shewan... 44 0.010
ref|YP_205538.1| DNA-binding transcriptional activator [Vib... 44 0.010
ref|ZP_02075657.1| hypothetical protein CLOL250_02433 [Clos... 44 0.010
ref|ZP_02083207.1| hypothetical protein CLOBOL_00723 [Clost... 44 0.012
ref|YP_300269.1| putative transcriptional regulator [Staphy... 44 0.012
ref|NP_233290.1| hypothetical protein VCA0905 [Vibrio chole... 44 0.013
ref|YP_131296.1| putative sugar diacid utilization regulato... 44 0.014
ref|ZP_01977361.1| carbohydrate diacid regulator [Vibrio ch... 44 0.014
ref|YP_439834.1| DNA-binding protein [Burkholderia thailand... 44 0.014
ref|ZP_01220012.1| putative sugar diacid utilization regula... 44 0.015
ref|ZP_02423222.1| hypothetical protein EUBSIR_02080 [Eubac... 44 0.015
ref|ZP_02437677.1| hypothetical protein CLOSS21_00108 [Clos... 44 0.016
ref|ZP_01957947.1| conserved hypothetical protein [Vibrio c... 44 0.016
ref|YP_001696999.1| Hypothetical yxkF protein [Lysinibacill... 44 0.016
ref|ZP_01481823.1| hypothetical protein VchoR_02002271 [Vib... 44 0.016
ref|ZP_01948176.1| conserved hypothetical protein [Vibrio c... 44 0.017
ref|ZP_02918830.1| hypothetical protein BIFDEN_02148 [Bifid... 44 0.018
ref|ZP_01965334.1| hypothetical protein RUMOBE_03073 [Rumin... 44 0.018
ref|ZP_02428720.1| hypothetical protein CLORAM_02130 [Clost... 43 0.021
ref|ZP_01966538.1| hypothetical protein RUMTOR_00076 [Rumin... 43 0.022
ref|ZP_02848609.1| transcriptional regulator, PucR family [... 43 0.025
ref|ZP_01514326.1| Sugar diacid utilization regulator-like ... 43 0.029
ref|ZP_01980730.1| conserved hypothetical protein [Vibrio c... 43 0.030
ref|ZP_02080168.1| hypothetical protein CLOLEP_01620 [Clost... 42 0.034
ref|YP_001750132.1| putative transcriptional regulator, Puc... 42 0.034
ref|YP_260484.1| Putative sugar diacid recognition family [... 42 0.035
ref|ZP_02159188.1| hypothetical Sugar diacid utilization re... 42 0.039
ref|ZP_01965608.1| hypothetical protein RUMOBE_03347 [Rumin... 42 0.039
ref|ZP_02235617.1| hypothetical protein DORFOR_02503 [Dorea... 42 0.040
ref|ZP_02441720.1| hypothetical protein ANACOL_01001 [Anaer... 42 0.040
ref|ZP_02466016.1| putative purine catabolism transcription... 42 0.045
ref|ZP_02090469.1| hypothetical protein FAEPRAM212_00719 [F... 42 0.047
ref|YP_001212563.1| sugar diacid utilization regulator [Pel... 42 0.048
ref|YP_001345142.1| transcriptional regulator, CdaR [Actino... 42 0.050
ref|ZP_02210853.1| hypothetical protein CLOBAR_00421 [Clost... 42 0.051
ref|YP_087886.1| carbohydrate diacid transcriptional activa... 42 0.051
ref|YP_885838.1| hypothetical protein MSMEG_1456 [Mycobacte... 42 0.054
ref|YP_430960.1| transcriptional regulator, CdaR [Moorella ... 42 0.068
ref|YP_001761496.1| transcriptional regulator, CdaR [Shewan... 41 0.071
ref|ZP_01290241.1| Response regulator receiver [delta prote... 41 0.081
ref|NP_693875.1| hypothetical protein OB2953 [Oceanobacillu... 41 0.085
ref|YP_890418.1| DNA-binding protein, putative [Mycobacteri... 41 0.088
ref|YP_001074218.1| carbohydrate diacid regulator [Burkhold... 41 0.089
ref|ZP_02042240.1| hypothetical protein RUMGNA_03039 [Rumin... 41 0.091
ref|YP_348640.1| Transcriptional Regulator, CdaR [Pseudomon... 41 0.091
ref|YP_336797.1| putative transcriptional regulator [Burkho... 41 0.092
gb|EDU10452.1| putative carbohydrate diacid regulator [Burk... 41 0.095
ref|ZP_01767468.1| putative carbohydrate diacid regulator [... 41 0.095
ref|YP_001061270.1| putative carbohydrate diacid regulator ... 41 0.095
ref|YP_001311541.1| transcriptional regulator, CdaR [Clostr... 41 0.10
ref|ZP_02465419.1| carbohydrate diacid regulator [Burkholde... 41 0.11
ref|ZP_00828898.1| COG3835: Sugar diacid utilization regula... 40 0.12
ref|ZP_02358385.1| DNA-binding protein [Burkholderia oklaho... 40 0.12
ref|ZP_00824547.1| COG3835: Sugar diacid utilization regula... 40 0.12
ref|ZP_00821822.1| COG3835: Sugar diacid utilization regula... 40 0.13
ref|YP_105362.1| DNA-binding protein [Burkholderia mallei A... 40 0.13
ref|ZP_02365454.1| DNA-binding protein [Burkholderia oklaho... 40 0.13
ref|ZP_02450854.1| putative purine catabolism transcription... 40 0.13
ref|YP_001062118.1| putative purine catabolism transcriptio... 40 0.13
ref|YP_110771.1| DNA-binding protein [Burkholderia pseudoma... 40 0.13
ref|ZP_02369557.1| carbohydrate diacid regulator [Burkholde... 40 0.13
ref|ZP_00832595.1| COG3835: Sugar diacid utilization regula... 40 0.13
ref|YP_438405.1| carbohydrate diacid regulator [Burkholderi... 40 0.14
ref|ZP_02383491.1| carbohydrate diacid regulator [Burkholde... 40 0.14
ref|NP_737877.1| hypothetical protein CE1267 [Corynebacteri... 40 0.14
ref|ZP_01328401.1| hypothetical protein BpseS_03003549 [Bur... 40 0.14
ref|ZP_01325046.1| hypothetical protein BpseP_03001028 [Bur... 40 0.14
ref|ZP_01335471.1| hypothetical protein Bpse4_03001964 [Bur... 40 0.14
ref|YP_110150.1| transcriptional regulator [Burkholderia ps... 40 0.14
ref|ZP_02406245.1| putative purine catabolism transcription... 40 0.14
ref|YP_118782.1| putative transcriptional regulator [Nocard... 40 0.15
ref|YP_001486167.1| possible transcriptional regulator [Bac... 40 0.16
ref|NP_781580.1| transcriptional regulatory protein [Clostr... 40 0.17
ref|YP_517104.1| hypothetical protein DSY0871 [Desulfitobac... 40 0.17
ref|YP_001885175.1| conserved hypothetical protein [Clostri... 40 0.17
ref|YP_001634135.1| transcriptional regulator, CdaR [Chloro... 40 0.18
ref|YP_051389.1| carbohydrate diacid transcriptional activa... 40 0.19
ref|YP_001186934.1| transcriptional regulator, CdaR [Pseudo... 40 0.19
ref|ZP_02170096.1| putative transcriptional regulator, PucR... 40 0.19
ref|ZP_02170032.1| transcriptional regulator, CdaR [Bacillu... 40 0.22
ref|NP_799625.1| hypothetical protein VPA0115 [Vibrio parah... 40 0.22
ref|ZP_01476734.1| hypothetical protein VEx2w_02000742 [Vib... 40 0.22
ref|ZP_01990305.1| carbohydrate diacid regulator [Vibrio pa... 40 0.22
ref|ZP_01261381.1| hypothetical protein V12G01_03696 [Vibri... 40 0.23
ref|YP_001349683.1| hypothetical protein PSPA7_4330 [Pseudo... 40 0.24
ref|YP_001485863.1| hypothetical protein BPUM_0611 [Bacillu... 40 0.24
ref|YP_888283.1| regulatory protein [Mycobacterium smegmati... 40 0.25
ref|YP_704314.1| hypothetical protein RHA1_ro04370 [Rhodoco... 40 0.25
ref|YP_176744.1| sugar diacid utilization regulator [Bacill... 40 0.26
ref|YP_001448966.1| transcriptional regulator [Vibrio harve... 40 0.26
ref|ZP_02327337.1| YsfB [Paenibacillus larvae subsp. larvae... 39 0.29
ref|YP_001701660.1| Conserved hypothetical protein [Mycobac... 39 0.29
ref|YP_080532.1| transcriptional regulator [Bacillus lichen... 39 0.31
ref|ZP_02950471.1| purine catabolism regulatory protein-lik... 39 0.32
ref|ZP_01291889.1| Response regulator receiver [delta prote... 39 0.33
ref|ZP_00921195.1| COG3835: Sugar diacid utilization regula... 39 0.34
ref|NP_752149.2| carbohydrate diacid transcriptional activa... 39 0.34
ref|YP_001430540.1| transcriptional regulator, CdaR [Roseif... 39 0.34
ref|YP_894022.1| possible carbohydrate diacid regulator [Ba... 39 0.34
ref|NP_308193.1| carbohydrate diacid transcriptional activa... 39 0.34
ref|AP_000823.1| DNA-binding transcriptional regulator [Esc... 39 0.34
ref|ZP_00716956.1| COG3835: Sugar diacid utilization regula... 39 0.34
ref|ZP_00237211.1| carbohydrate diacid regulator [Bacillus ... 39 0.35
ref|YP_001742291.1| carbohydrate diacid regulator [Escheric... 39 0.35
ref|YP_174266.1| regulator of polyketide synthase expressio... 39 0.35
gb|AAZ86967.1| conserved hypothetical protein [Shigella son... 39 0.35
ref|ZP_02949680.1| conserved hypothetical protein [Clostrid... 39 0.36
gb|AAN78693.1|AE016755_193 Carbohydrate diacid regulator [E... 39 0.37
gb|AAG54466.1|AE005192_8 orf, hypothetical protein [Escheri... 39 0.37
ref|YP_001454725.1| hypothetical protein CKO_03205 [Citroba... 39 0.38
ref|YP_001571784.1| hypothetical protein SARI_02794 [Salmon... 39 0.38
ref|YP_215197.1| carbohydrate diacid transcriptional activa... 39 0.38
ref|YP_001126381.1| hypothetical protein GTNG_2287 [Geobaci... 39 0.39
ref|YP_001473257.1| transcriptional regulator, CdaR [Shewan... 39 0.40
ref|YP_401901.1| hypothetical protein SDY_0180 [Shigella dy... 39 0.42
ref|ZP_02832784.1| carbohydrate diacid transcriptional acti... 39 0.43
ref|NP_459215.1| carbohydrate diacid transcriptional activa... 39 0.43
ref|YP_001586543.1| hypothetical protein SPAB_00268 [Salmon... 39 0.43
ref|NP_454818.1| carbohydrate diacid transcriptional activa... 39 0.44
ref|YP_149558.1| carbohydrate diacid transcriptional activa... 39 0.44
ref|ZP_01789426.1| hypothetical protein CGSHi3655_01442 [Ha... 39 0.45
ref|YP_001396499.1| Transcriptional regulator [Clostridium ... 39 0.45
ref|YP_001175440.1| carbohydrate diacid transcriptional act... 39 0.45
ref|YP_001094653.1| transcriptional regulator, CdaR [Shewan... 39 0.51
ref|ZP_01797575.1| hypothetical protein CGSHiR3021_00717 [H... 39 0.51
ref|ZP_02524019.1| Carbohydrate diacid regulator [Bacillus ... 39 0.54
ref|ZP_02586368.1| Carbohydrate diacid regulator [Bacillus ... 39 0.54
ref|ZP_00740069.1| Carbohydrate diacid regulator [Bacillus ... 39 0.55
ref|ZP_01172822.1| hypothetical Sugar diacid utilization re... 39 0.55
ref|YP_001274529.1| transcriptional regulator, CdaR [Roseif... 39 0.56
ref|ZP_01784827.1| hypothetical protein CGSHi22121_09510 [H... 39 0.56
ref|NP_831080.1| Carbohydrate diacid regulator [Bacillus ce... 39 0.56
ref|YP_001644088.1| transcriptional regulator, CdaR [Bacill... 39 0.56
ref|ZP_01787303.1| hypothetical protein CGSHi22421_01607 [H... 39 0.56
ref|YP_001333867.1| regulator of D-galactarate, D-glucarate... 39 0.57
ref|YP_001511854.1| transcriptional regulator, CdaR [Alkali... 39 0.59
ref|ZP_01791190.1| hypothetical protein CGSHiAA_03751 [Haem... 39 0.59
ref|ZP_01793332.1| hypothetical protein CGSHiHH_02966 [Haem... 38 0.60
ref|YP_247816.1| hypothetical protein NTHI0172 [Haemophilus... 38 0.61
ref|NP_438266.1| hypothetical protein HI0093 [Haemophilus i... 38 0.61
ref|ZP_00157686.2| COG3835: Sugar diacid utilization regula... 38 0.62
ref|ZP_02444751.1| hypothetical protein ANACOL_04080 [Anaer... 38 0.70
ref|ZP_02253507.1| transcriptional regulator, putative [Bac... 38 0.76
ref|YP_925460.1| hypothetical protein Noca_4276 [Nocardioid... 38 0.77
ref|ZP_02357655.1| carbohydrate diacid regulator [Burkholde... 38 0.77
ref|YP_001422163.1| YsfB [Bacillus amyloliquefaciens FZB42]... 38 0.78
ref|NP_977732.1| transcriptional regulator, putative [Bacil... 38 0.78
ref|ZP_02591668.1| transcriptional regulator; possible carb... 38 0.81
ref|NP_843776.1| transcriptional regulator, putative [Bacil... 38 0.81
ref|ZP_00391623.1| COG3835: Sugar diacid utilization regula... 38 0.81
ref|YP_082790.1| transcriptional regulator; possible carboh... 38 0.84
ref|ZP_01738046.1| hypothetical protein MELB17_05974 [Marin... 38 0.94
ref|ZP_01985358.1| carbohydrate diacid regulator [Vibrio ha... 38 0.98
ref|YP_001160188.1| hypothetical protein Strop_3377 [Salini... 38 0.99
ref|NP_693752.1| hypothetical protein OB2830 [Oceanobacillu... 38 1.0
ref|NP_693706.1| hypothetical protein OB2784 [Oceanobacillu... 37 1.0
ref|NP_745332.1| hypothetical protein PP_3188 [Pseudomonas ... 37 1.1
ref|YP_001538408.1| putative transcriptional regulator, Puc... 37 1.1
ref|YP_001267847.1| transcriptional regulator, PucR family ... 37 1.1
ref|YP_001361822.1| transcriptional regulator, PucR family ... 37 1.1
ref|YP_001374340.1| transcriptional regulator, CdaR [Bacill... 37 1.1
ref|NP_816623.1| hypothetical protein EF3008 [Enterococcus ... 37 1.2
ref|ZP_02849163.1| transcriptional regulator, PucR family [... 37 1.2
ref|YP_952163.1| transcriptional regulator, CdaR [Mycobacte... 37 1.2
ref|YP_001600906.1| putative carbohydrate diacid regulator ... 37 1.3
ref|ZP_02851653.1| putative transcriptional regulator, PucR... 37 1.4
ref|YP_001318569.1| transcriptional regulator, PucR family ... 37 1.4
ref|YP_517485.1| hypothetical protein DSY1252 [Desulfitobac... 37 1.4
ref|ZP_00604826.1| similar to Sugar diacid utilization regu... 37 1.4
ref|XP_001655402.1| hypothetical protein AaeL_AAEL011506 [A... 37 1.5
ref|ZP_02981864.1| transcriptional regulator, CdaR [Glucona... 37 1.5
ref|YP_955189.1| putative GAF sensor protein [Mycobacterium... 37 1.6
ref|YP_001749078.1| transcriptional regulator, PucR family ... 37 1.6
ref|YP_118720.1| putative transcriptional regulator [Nocard... 37 1.6
ref|YP_001815331.1| putative transcriptional regulator, Puc... 37 1.6
ref|YP_701302.1| possible sugar diacid utilization regulato... 37 1.7
ref|XP_001312080.1| hypothetical protein TVAG_115540 [Trich... 37 1.7
ref|NP_242601.1| hypothetical protein BH1735 [Bacillus halo... 37 1.9
ref|YP_406709.2| carbohydrate diacid transcriptional activa... 37 1.9
ref|YP_001886545.1| putative carbohydrate diacid regulator ... 37 2.0
ref|YP_429085.1| Purine catabolism PurC-like [Moorella ther... 37 2.0
ref|NP_243597.1| hypothetical protein BH2731 [Bacillus halo... 37 2.0
gb|ABB64881.1| conserved hypothetical protein [Shigella boy... 37 2.0
ref|YP_174079.1| hypothetical protein ABC0578 [Bacillus cla... 37 2.0
ref|ZP_01372517.1| Regulator of polyketide synthase express... 37 2.1
ref|ZP_02087225.1| hypothetical protein CLOBOL_04769 [Clost... 37 2.1
ref|ZP_01841126.1| transcriptional regulator, CdaR [Shewane... 36 2.3
ref|YP_177230.1| transcriptional regulator [Bacillus clausi... 36 2.3
ref|YP_855180.1| carbohydrate diacid regulator [Aeromonas h... 36 2.4
ref|YP_001691552.1| conserved hypothetical protein [Finegol... 36 2.4
ref|ZP_02211596.1| hypothetical protein CLOBAR_01209 [Clost... 36 2.5
ref|YP_001509515.1| putative transcriptional regulator, Puc... 36 2.5
ref|YP_001558853.1| transcriptional regulator, CdaR [Clostr... 36 2.6
ref|NP_793064.1| carbohydrate diacid regulator, putative [P... 36 2.8
ref|YP_001651189.1| hypothetical protein APJL_0141 [Actinob... 36 2.8
ref|YP_001052853.1| hypothetical protein APL_0140 [Actinoba... 36 3.0
ref|ZP_00134707.2| COG3835: Sugar diacid utilization regula... 36 3.2
ref|YP_001422513.1| PucR [Bacillus amyloliquefaciens FZB42]... 36 3.8
ref|ZP_00730237.1| COG3835: Sugar diacid utilization regula... 36 3.8
ref|ZP_02902939.1| carbohydrate diacid regulator [Escherich... 36 3.8
ref|ZP_02842906.1| transcriptional regulator, CdaR [Thauera... 36 3.8
ref|ZP_00710638.1| COG3835: Sugar diacid utilization regula... 36 3.8
ref|YP_950356.1| GAF domain protein [Arthrobacter aurescens... 35 4.0
ref|ZP_01859450.1| hypothetical protein BSG1_00915 [Bacillu... 35 4.1
ref|YP_001126368.1| hypothetical protein GTNG_2274 [Geobaci... 35 4.3
ref|YP_001477372.1| transcriptional regulator, CdaR [Serrat... 35 4.3
ref|YP_519882.1| hypothetical protein DSY3649 [Desulfitobac... 35 4.3
ref|NP_391122.1| transcriptional regulator [Bacillus subtil... 35 4.3
ref|ZP_01370937.1| PAS modulated sigma54 specific transcrip... 35 4.5
ref|NP_001087665.1| MGC81907 protein [Xenopus laevis] >gi|5... 35 4.5
ref|YP_001321111.1| transcriptional regulator, CdaR [Alkali... 35 4.7
ref|NP_390745.1| hypothetical protein BSU28670 [Bacillus su... 35 4.9
ref|ZP_02234573.1| hypothetical protein DORFOR_01445 [Dorea... 35 5.3
ref|YP_794604.1| Sugar diacid utilization regulator [Lactob... 35 5.3
ref|YP_001783918.1| transcriptional regulator, CdaR [Haemop... 35 5.6
ref|NP_630273.1| regulatory protein [Streptomyces coelicolo... 35 5.6
ref|YP_719730.1| possible sugar diacid utilization regulato... 35 5.6
ref|YP_001140551.1| Sugar diacid utilization regulator [Aer... 35 5.7
ref|ZP_01371035.1| transcriptional regulator, CdaR [Desulfi... 35 5.9
ref|YP_807535.1| Sugar diacid utilization regulator [Lactob... 35 5.9
ref|NP_622681.1| Regulator of polyketide synthase expressio... 35 6.4
ref|YP_701440.1| hypothetical protein RHA1_ro01464 [Rhodoco... 35 6.6
ref|YP_519960.1| hypothetical protein DSY3727 [Desulfitobac... 35 6.6
ref|YP_001438857.1| hypothetical protein ESA_02791 [Enterob... 35 6.9
ref|YP_001104215.1| transcriptional regulator, CdaR [Saccha... 35 7.0
ref|YP_001402994.1| putative carbohydrate diacid regulator ... 35 7.0
ref|NP_241623.1| hypothetical protein BH0757 [Bacillus halo... 35 7.1
ref|ZP_02538768.1| hypothetical protein BcerW_01615 [Bacill... 35 7.4
ref|YP_072300.1| putative regulatory protein [Yersinia pseu... 35 7.6
ref|ZP_02260132.1| hypothetical protein BcerA_10315 [Bacill... 35 7.8
ref|ZP_01370827.1| Regulator of polyketide synthase express... 35 8.0
ref|YP_001512399.1| transcriptional regulator, PucR family ... 35 8.3
ref|ZP_02633625.1| putative carbohydrate diacid regulator [... 35 8.6
ref|ZP_00418946.1| Putative sugar diacid recognition [Azoto... 35 8.6
ref|ZP_01723413.1| hypothetical protein BB14905_01035 [Baci... 34 8.7
ref|ZP_02952766.1| putative carbohydrate diacid regulator [... 34 8.9
ref|YP_001822868.1| putative regulatory protein [Streptomyc... 34 9.1
ref|NP_407418.1| putative regulatory protein [Yersinia pest... 34 9.1
ref|YP_695301.1| putative carbohydrate diacid regulator [Cl... 34 9.2
ref|YP_236186.1| Putative sugar diacid recognition [Pseudom... 34 9.2
ref|NP_561775.1| hypothetical protein CPE0859 [Clostridium ... 34 9.3
ref|ZP_02638127.1| putative carbohydrate diacid regulator [... 34 9.4
ref|YP_698169.1| putative carbohydrate diacid regulator [Cl... 34 9.5
ref|YP_805996.1| Regulator of polyketide synthase expressio... 34 9.5
ref|ZP_02634796.1| putative carbohydrate diacid regulator [... 34 9.8
ref|ZP_01371473.1| transcriptional regulator, CdaR [Desulfi... 34 9.8
>ref|NP_269943.1| leucine-rich protein [Streptococcus pyogenes M1 GAS]
ref|YP_283046.1| leucine rich protein [Streptococcus pyogenes MGAS5005]
gb|AAK34664.1| leucine-rich protein [Streptococcus pyogenes M1 GAS]
gb|AAZ52301.1| leucine rich protein [Streptococcus pyogenes MGAS5005]
Length = 282
Score = 577 bits (1486), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
>ref|YP_599361.1| Leucine rich protein [Streptococcus pyogenes MGAS10270]
gb|ABF34817.1| Leucine rich protein [Streptococcus pyogenes MGAS10270]
Length = 296
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/282 (98%), Positives = 282/282 (100%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 15 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 74
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 75 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 134
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 135 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 194
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 195 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 254
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 255 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 296
>ref|YP_001129173.1| leucine-rich protein [Streptococcus pyogenes str. Manfredo]
emb|CAM30975.1| leucine-rich protein [Streptococcus pyogenes str. Manfredo]
Length = 282
Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/282 (98%), Positives = 282/282 (100%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 1 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 61 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQ+AAGTLRECFEEECQLLTAY
Sbjct: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQIAAGTLRECFEEECQLLTAY 180
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
>ref|YP_061009.1| Leucine rich protein [Streptococcus pyogenes MGAS10394]
gb|AAT87826.1| Leucine rich protein [Streptococcus pyogenes MGAS10394]
Length = 296
Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/282 (98%), Positives = 281/282 (99%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 15 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 74
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQ LPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 75 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQTLPDDLVELLQQMIAGLEVILPISATQTA 134
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 135 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 194
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 195 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 254
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 255 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 296
>ref|YP_281136.1| leucine rich protein [Streptococcus pyogenes MGAS6180]
gb|AAX72781.1| leucine rich protein [Streptococcus pyogenes MGAS6180]
Length = 296
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/282 (98%), Positives = 281/282 (99%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 15 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 74
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 75 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 134
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 135 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 194
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQ LSPQSDMADVVHALWSEHGNLVQT
Sbjct: 195 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQSLSPQSDMADVVHALWSEHGNLVQT 254
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 255 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 296
>ref|NP_608017.1| leucine-rich protein [Streptococcus pyogenes MGAS8232]
gb|AAL98516.1| leucine-rich protein [Streptococcus pyogenes MGAS8232]
Length = 282
Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/282 (98%), Positives = 280/282 (99%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCE LQPL
Sbjct: 1 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEDLQPL 60
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLV LLQQMIAGLEVILPISATQTA
Sbjct: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVALLQQMIAGLEVILPISATQTA 120
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
>ref|YP_597417.1| leucine rich protein [Streptococcus pyogenes MGAS9429]
ref|YP_601302.1| Leucine rich protein [Streptococcus pyogenes MGAS2096]
gb|ABF32873.1| leucine rich protein [Streptococcus pyogenes MGAS9429]
gb|ABF36758.1| Leucine rich protein [Streptococcus pyogenes MGAS2096]
Length = 296
Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/282 (97%), Positives = 279/282 (98%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGL QCEVLQPL
Sbjct: 15 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLDQCEVLQPL 74
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQALP DLVELLQQMIAGLEVILPISATQTA
Sbjct: 75 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPADLVELLQQMIAGLEVILPISATQTA 134
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQA+SIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 135 FLCRQAVSIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 194
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQF QFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 195 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFQQFLSPQSDMADVVHALWSEHGNLVQT 254
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 255 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 296
>ref|NP_802961.1| putative leucine-rich protein [Streptococcus pyogenes SSI-1]
dbj|BAC64794.1| putative leucine-rich protein [Streptococcus pyogenes SSI-1]
Length = 296
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/282 (96%), Positives = 279/282 (98%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 15 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 74
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 75 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 134
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLE LLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 135 FLCRQAISIKVLRWLEVLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 194
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
L+Q+SG KLLTF+ +MLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 195 LKQKSGGKLLTFAEVMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 254
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 255 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 296
>ref|YP_603271.1| Leucine rich protein [Streptococcus pyogenes MGAS10750]
gb|ABF38727.1| Leucine rich protein [Streptococcus pyogenes MGAS10750]
Length = 296
Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/282 (96%), Positives = 276/282 (97%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 15 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 74
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQ LP DLVELLQQMIAGLEVILPIS TQTA
Sbjct: 75 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQVLPADLVELLQQMIAGLEVILPISTTQTA 134
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQA SIKVLR LE LLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 135 FLCRQATSIKVLRSLEGLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 194
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 195 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 254
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 255 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 296
>ref|NP_665501.1| leucine-rich protein [Streptococcus pyogenes MGAS315]
gb|AAM80304.1| leucine-rich protein [Streptococcus pyogenes MGAS315]
Length = 282
Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/282 (96%), Positives = 279/282 (98%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL
Sbjct: 1 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA
Sbjct: 61 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQAISIKVLRWLE LLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 121 FLCRQAISIKVLRWLEVLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
L+Q+SG KLLTF+ +MLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT
Sbjct: 181 LKQKSGGKLLTFAEVMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
Sbjct: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
>sp|Q54087|LRPR_STREQ Leucine-rich protein
emb|CAA51350.1| leucine rich protein [Streptococcus dysgalactiae subsp.
equisimilis]
prf||2009358B Leu-rich protein
Length = 282
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/282 (91%), Positives = 271/282 (96%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
MELKDYFPEMQVGPHPLGDK+W+S+KEGDQYVHFPKSCLSEKERLLLEVGLGQ EVLQPL
Sbjct: 1 MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLGQYEVLQPL 60
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTA 120
GSPWQRYLLDHQGNPPQL+ETSQFIYLNHQQ LP DLVELLQQMIAGLEVILPIS TQTA
Sbjct: 61 GSPWQRYLLDHQGNPPQLFETSQFIYLNHQQVLPADLVELLQQMIAGLEVILPISTTQTA 120
Query: 121 FLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
FLCRQA SIKVLR LE LLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY
Sbjct: 121 FLCRQATSIKVLRSLEGLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAY 180
Query: 181 LRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQT 240
L+Q+SG KLLTF+ +MLWS+LSH +F ALTRQFHQFL+PQSDMADVVHALWSEHGNLVQT
Sbjct: 181 LKQKSGGKLLTFAEVMLWSILSHQSFPALTRQFHQFLNPQSDMADVVHALWSEHGNLVQT 240
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFA+LFLLKY
Sbjct: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAYLFLLKY 282
>ref|ZP_00788515.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
CJB111]
gb|EAO72761.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
CJB111]
Length = 283
Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 164/279 (58%), Gaps = 3/279 (1%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
M+ K+ FPE+ +D++ +++ +HFPKS L+++E LL++ E +
Sbjct: 1 MDFKELFPEVITKQEVKQSEDYIIVEQDGHVLHFPKSSLTKRELCLLQMT-PSLEDASSV 59
Query: 61 GS--PWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQ 118
S PW RYL++ +G PQ + QFI++ HQ L ++L + L ++ +E+I+ I+ TQ
Sbjct: 60 DSQNPWYRYLVEGRGRLPQSHSAVQFIFIEHQFTLSEELKDFLSPLVINVEIIMTINQTQ 119
Query: 119 TAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLT 178
+ + Q L D+LPT+E+DF L + GN+W + A +E +EEE +L T
Sbjct: 120 SVMILNQDNFFNATELLTDILPTIENDFNTRLRCYFGNSWTHLQAVDWKELYEEEYKLFT 179
Query: 179 AYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLV 238
+L ++ + F + LW+L + ++ + Q + SD + ++ ALW E GNL
Sbjct: 180 LFLSHKAEQHYCRFPKMALWALANQSPMPSIKAKCLQHILDTSDTSAIIKALWQEQGNLA 239
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+TA+ L+IHRNSLQYKLDKF Q SGL+LK LDDLA+A+L
Sbjct: 240 KTAKALFIHRNSLQYKLDKFTQSSGLNLKILDDLAYAYL 278
>ref|ZP_00784640.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
COH1]
gb|EAO76650.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
COH1]
Length = 283
Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 164/279 (58%), Gaps = 3/279 (1%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEV--GLGQCEVLQ 58
M+ K+ FPE+ +D++ +++ +HFPKS L+++E LL++ L + +
Sbjct: 1 MDFKELFPEVITKQEVKQSEDYIIVEQDGHVLHFPKSSLTKRELCLLQMTQSLEEASSVD 60
Query: 59 PLGSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQ 118
+PW RYL++ +G PQ + QFI++ HQ L ++L + L ++ +E I+ I+ TQ
Sbjct: 61 S-QNPWYRYLVEGRGRLPQSHSAVQFIFIEHQFTLSEELKDFLSPLVINVETIMTINQTQ 119
Query: 119 TAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLT 178
+ + Q L D+LPT+E+DF L + GN+W + A +E +EEE +L T
Sbjct: 120 SVMILNQDNFFNATELLTDILPTIENDFNTRLRCYFGNSWTHLQAVDWKELYEEEYKLFT 179
Query: 179 AYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLV 238
+L ++ + F + LW+L + ++ + Q + SD + ++ ALW E GNL
Sbjct: 180 LFLSHKAEQHYCRFPKMALWALANQSPMPSIKAKCLQHILDTSDTSAIIKALWQEQGNLA 239
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+TA+ L+IHRNSLQYKLDKF Q SGL+LK LDDLA+A+L
Sbjct: 240 KTAKALFIHRNSLQYKLDKFTQSSGLNLKILDDLAYAYL 278
>ref|NP_688915.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
2603V/R]
ref|NP_736347.1| hypothetical protein gbs1913 [Streptococcus agalactiae NEM316]
ref|ZP_00781447.1| Leucine-rich protein [Streptococcus agalactiae 18RS21]
ref|ZP_00790402.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
515]
gb|AAN00788.1|AE014278_15 helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
2603V/R]
emb|CAD47572.1| Unknown [Streptococcus agalactiae NEM316]
gb|EAO61961.1| Leucine-rich protein [Streptococcus agalactiae 18RS21]
gb|EAO70843.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
515]
Length = 283
Score = 194 bits (493), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 163/279 (58%), Gaps = 3/279 (1%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
M+ K+ FPE+ +D++ +++ +HFPKS L+++E LL++ E +
Sbjct: 1 MDFKELFPEVITKQEVKQSEDYIIVEQDGHVLHFPKSSLTKRELYLLQMT-PSLEDASSV 59
Query: 61 GS--PWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQ 118
S PW RYL++ +G PQ + QFI++ HQ L ++L + L ++ +E I+ I+ TQ
Sbjct: 60 DSQNPWYRYLVEGRGRLPQSHSAVQFIFIEHQFTLSEELKDFLSPLVINVETIMTINQTQ 119
Query: 119 TAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLT 178
+ + Q L D+LPT+E+DF L + GN+W + A +E +EEE +L T
Sbjct: 120 SVMILNQDNFFNATELLTDILPTIENDFNTRLRCYFGNSWTHLQAVDWKELYEEEYKLFT 179
Query: 179 AYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLV 238
+L ++ + F + LW+L + ++ + Q + SD + ++ ALW E GNL
Sbjct: 180 LFLSHKAEQHYCRFPKMALWALANQSPMPSIKAKCLQHILDTSDTSAIIKALWQEQGNLA 239
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+TA+ L+IHRNSLQYKLDKF Q SGL+LK LDDLA+A+L
Sbjct: 240 KTAKALFIHRNSLQYKLDKFTQSSGLNLKILDDLAYAYL 278
>ref|YP_330480.1| DNA-binding protein, Fis family [Streptococcus agalactiae A909]
gb|ABA45274.1| DNA-binding protein, Fis family [Streptococcus agalactiae A909]
Length = 283
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 163/279 (58%), Gaps = 3/279 (1%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
M+ K+ FPE+ +D++ +++ +HFPKS L+++E LL++ E +
Sbjct: 1 MDFKELFPEVITKQEVKQSEDYIIVEQDGHVLHFPKSSLTKRELCLLQMT-PSLEDASSV 59
Query: 61 GS--PWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQ 118
S PW RYL++ +G PQ + QFI++ HQ L ++L + L ++ +E I+ I+ TQ
Sbjct: 60 DSQNPWYRYLVEGRGRLPQSHSAVQFIFIEHQFTLSEELKDFLSPLVINVEKIMTINQTQ 119
Query: 119 TAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLT 178
+ + Q L D+LPT+E+DF L + GN+W + A +E +EEE +L T
Sbjct: 120 SVMILNQDNFFNATELLTDILPTIENDFNTRLRCYFGNSWTHLQAVDWKELYEEEYKLFT 179
Query: 179 AYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLV 238
+L ++ + F + LW+L + ++ + Q + SD + ++ ALW E GNL
Sbjct: 180 LFLSHKAEQHYCRFPKMALWALANQSPMPSIKAKCLQHILDTSDTSAIIKALWQEQGNLA 239
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+TA+ L+IHRNSLQYKLDKF Q SGL+LK LDDLA+A+L
Sbjct: 240 KTAKALFIHRNSLQYKLDKFTQSSGLNLKILDDLAYAYL 278
>ref|ZP_00782161.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
H36B]
gb|EAO79124.1| helix-turn-helix domain protein, fis-type [Streptococcus agalactiae
H36B]
Length = 283
Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 162/279 (58%), Gaps = 3/279 (1%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
M+ K+ FPE+ +D++ +++ +HFPK L+++E LL++ E +
Sbjct: 1 MDFKELFPEVITKQEVKQSEDYIIVEQDGHVLHFPKYSLTKRELCLLQMT-PSLEDASSV 59
Query: 61 GS--PWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQ 118
S PW RYL++ +G PQ + QFI++ HQ L ++L + L ++ +E I+ I+ TQ
Sbjct: 60 DSQNPWYRYLVEGRGRLPQSHSAVQFIFIEHQFTLSEELKDFLSPLVINVEKIMTINQTQ 119
Query: 119 TAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLT 178
+ + Q L D+LPT+E+DF L + GN+W + A +E +EEE +L T
Sbjct: 120 SVMILNQDNFFNATELLTDILPTIENDFNTRLRCYFGNSWTHLQAVDWKELYEEEYKLFT 179
Query: 179 AYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLV 238
+L ++ + F + LW+L + ++ + Q + SD + ++ ALW E GNL
Sbjct: 180 LFLSHKAEQHYCRFPKMALWALANQSPMPSIKAKCLQHILDTSDTSAIIKALWQEQGNLA 239
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+TA+ L+IHRNSLQYKLDKF Q SGL+LK LDDLA+A+L
Sbjct: 240 KTAKALFIHRNSLQYKLDKFTQSSGLNLKILDDLAYAYL 278
>ref|ZP_02919913.1| hypothetical protein STRINF_00772 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gb|EDT47921.1| hypothetical protein STRINF_00772 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 282
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 6/284 (2%)
Query: 1 MELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEV---GLGQCEVL 57
M L+ FPE +DW++I+E Q + P + LSE+E+ LL + G+ + +V
Sbjct: 1 MSLERLFPEAVEAGKIEHAEDWVAIEENGQTYYLPLANLSEREKALLALQNDGILEDKVT 60
Query: 58 QPLGSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISAT 117
+ +PW RYL+ + + Y+ Q IY++H++ALP++L + ++ L + IS T
Sbjct: 61 E---NPWYRYLIQDDLSVAKDYKALQIIYIDHKEALPEELCDFFVTLLPNLLATVVISKT 117
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
+T + Q I+ ++D+LPTLESDFG+ LT+F GN W + A L + EE +L
Sbjct: 118 RTLLILNQEEMIEAEDLIDDVLPTLESDFGIKLTIFFGNVWCKFQADDLPAFYREESRLF 177
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNL 237
+ + ++FS ++L + A+ + Q + D+ ++ +W E GNL
Sbjct: 178 ANMRHFRGNERTVSFSQMLLLAYAHQLDLPAIKHKMLQAIDDSKDIRPIIMTMWQEQGNL 237
Query: 238 VQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+TAQ LYIHRNSL YK++KF SGL+LK L+DLAF++L +++
Sbjct: 238 AKTAQNLYIHRNSLHYKIEKFRLFSGLNLKNLNDLAFSYLLIME 281
>ref|ZP_02722378.1| leucine-rich protein [Streptococcus pneumoniae MLV-016]
ref|YP_001835275.1| leucine-rich protein [Streptococcus pneumoniae CGSP14]
gb|ACB89810.1| leucine-rich protein [Streptococcus pneumoniae CGSP14]
gb|EDT98295.1| leucine-rich protein [Streptococcus pneumoniae MLV-016]
Length = 294
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 155/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + A
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFPNCQTVLQVGAQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D++ +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDMIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|ZP_01820357.1| leucine-rich protein [Streptococcus pneumoniae SP6-BS73]
gb|EDK76531.1| leucine-rich protein [Streptococcus pneumoniae SP6-BS73]
Length = 294
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 155/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + + +L + A
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFSNCQTVLQVGAQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|ZP_01825738.1| hypothetical protein CGSSp11BS70_03676 [Streptococcus pneumoniae
SP11-BS70]
gb|EDK62956.1| hypothetical protein CGSSp11BS70_03676 [Streptococcus pneumoniae
SP11-BS70]
Length = 294
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 154/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + A
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLTSWLDMMRTLFPNCQTVLQVGAQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|ZP_02716896.1| leucine-rich protein [Streptococcus pneumoniae CDC3059-06]
gb|EDT97608.1| leucine-rich protein [Streptococcus pneumoniae CDC3059-06]
Length = 294
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 154/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + A
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLTSWLDMMRTLFPNCQTVLQVGAQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|ZP_02710216.1| leucine-rich protein [Streptococcus pneumoniae CDC1087-00]
gb|EDT91736.1| leucine-rich protein [Streptococcus pneumoniae CDC1087-00]
Length = 294
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 154/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + A
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFPNCQTVLQVGAQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQNKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|NP_345106.1| leucine-rich protein [Streptococcus pneumoniae TIGR4]
ref|ZP_01408392.1| hypothetical protein SpneT_02001139 [Streptococcus pneumoniae
TIGR4]
ref|ZP_01829444.1| leucine-rich protein [Streptococcus pneumoniae SP18-BS74]
ref|ZP_01835610.1| leucine-rich protein [Streptococcus pneumoniae SP23-BS72]
ref|ZP_02714660.1| leucine-rich protein [Streptococcus pneumoniae CDC0288-04]
ref|YP_001694077.1| leucine-rich protein [Streptococcus pneumoniae Hungary19A-6]
gb|AAK74746.1| leucine-rich protein [Streptococcus pneumoniae TIGR4]
gb|EDK69605.1| leucine-rich protein [Streptococcus pneumoniae SP18-BS74]
gb|EDK81236.1| leucine-rich protein [Streptococcus pneumoniae SP23-BS72]
gb|ACA35713.1| leucine-rich protein [Streptococcus pneumoniae Hungary19A-6]
gb|EDT95376.1| leucine-rich protein [Streptococcus pneumoniae CDC0288-04]
Length = 294
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 154/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + A
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFPNCQTVLQVGAQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|ZP_01832158.1| hypothetical protein CGSSp19BS75_05512 [Streptococcus pneumoniae
SP19-BS75]
gb|EDK72197.1| hypothetical protein CGSSp19BS75_05512 [Streptococcus pneumoniae
SP19-BS75]
Length = 294
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 155/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + +
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFPNCQTVLQVGSQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G+ W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGHVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|NP_358115.1| hypothetical protein spr0521 [Streptococcus pneumoniae R6]
ref|YP_816019.1| hypothetical protein SPD_0517 [Streptococcus pneumoniae D39]
ref|ZP_01817294.1| hypothetical protein CGSSp3BS71_07574 [Streptococcus pneumoniae
SP3-BS71]
ref|ZP_01822019.1| hypothetical protein CGSSp9BS68_06365 [Streptococcus pneumoniae
SP9-BS68]
ref|ZP_01827215.1| hypothetical protein CGSSp14BS69_01489 [Streptococcus pneumoniae
SP14-BS69]
ref|ZP_02707781.1| leucine-rich protein [Streptococcus pneumoniae CDC1873-00]
gb|AAK99325.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gb|ABJ54876.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
gb|EDK66579.1| hypothetical protein CGSSp14BS69_01489 [Streptococcus pneumoniae
SP14-BS69]
gb|EDK75234.1| hypothetical protein CGSSp3BS71_07574 [Streptococcus pneumoniae
SP3-BS71]
gb|EDK79934.1| hypothetical protein CGSSp9BS68_06365 [Streptococcus pneumoniae
SP9-BS68]
gb|EDT51871.1| leucine-rich protein [Streptococcus pneumoniae CDC1873-00]
Length = 294
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 154/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + +
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFPNCQTVLQVGSQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|ZP_02712480.1| leucine-rich protein [Streptococcus pneumoniae SP195]
gb|EDT93759.1| leucine-rich protein [Streptococcus pneumoniae SP195]
Length = 294
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 154/284 (54%), Gaps = 8/284 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL+D+FPE ++ P+ + ++++ Q++ ++ LSE+E+ L+ + L Q E + L
Sbjct: 5 ELQDWFPEARISDQPVEKEGYLTLPLASQQWILLEEAGLSEREKQLVAL-LTQQEQARSL 63
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLN---HQQALPDDLVELLQQMIAGLEVILPISAT 117
+PW YL++ +G PQ+++ Q +Y + QQ +++++ + + +L + +
Sbjct: 64 -NPWYSYLVEGKGQAPQVFKKIQLVYCHLSYFQQENLASWLDMMRTLFPNCQTVLQVGSQ 122
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
F+ +Q V L D + +E DFGL L++ +G W Q L + + E L
Sbjct: 123 DYVFVLQQDKYTSVRDILSDTIEAVEYDFGLRLSIMLGQVWSQTGHQALSDLIKAERDLF 182
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQ-FHQFLSPQSDMADVVHALWSEHGN 236
+ RQ + + TFS L LWS+ L ++ HQ + Q + +++ +LW
Sbjct: 183 KTWWRQ-GHQGVHTFSQLYLWSMGERLVDLKPIKECLHQMILDQDQIQEIILSLWENSAV 241
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
L +TAQ+LY+HRNSLQYK+DK+ + +GL LK+L DL + +L
Sbjct: 242 LTKTAQQLYLHRNSLQYKIDKWEELTGLQLKELTDLTLCYQLIL 285
>ref|YP_001035964.1| Leucine-rich protein, putative [Streptococcus sanguinis SK36]
gb|ABN45414.1| Leucine-rich protein, putative [Streptococcus sanguinis SK36]
Length = 291
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 147/286 (51%), Gaps = 8/286 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL FP+ ++ P D +S+ + +V + L+++E+ LL + + V
Sbjct: 5 ELLALFPKARLENKPSQDSQKVSLPIDQKHWVVLAREDLTDREQHLLALLTEKESVFS-- 62
Query: 61 GSPWQRYLLDH-QGNPPQLYETSQFIY---LNHQQALPDDLVELLQQMIAGLEVILPISA 116
+PW RYLL H + + PQ + +QFI+ +++ +E+++ ++ S
Sbjct: 63 QNPWYRYLLAHSEEDLPQDSQATQFIHCHLFHYETESISAWLEMMRTLLTNRVSYFQTSP 122
Query: 117 TQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQL 176
F+ Q + V L D+L +E DF L L + +G W + A L E ++ E L
Sbjct: 123 QDYIFVLDQGQELAVKDLLRDVLSAVEYDFNLRLAVLIGQVWPKAAKDQLPELYQAESNL 182
Query: 177 LTAYLRQQSGRKLLTFSGLMLWSL-LSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHG 235
+L Q +L FS L LW L + + L L R+ HQ + Q +A+++ ALW
Sbjct: 183 FAQWLNQYHQSLVLPFSQLFLWGLGEAKESLLPLKRKLHQLIDGQEQLAEIILALWENGA 242
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+ + AQ+LYIHRN+LQY+LDK+ + +GL LK+L DL+ + +L+
Sbjct: 243 VVTKAAQQLYIHRNTLQYRLDKWEELTGLQLKELTDLSLCYHIILR 288
>ref|ZP_00875824.1| Helix-turn-helix, Fis-type [Streptococcus suis 89/1591]
gb|EAP40007.1| Helix-turn-helix, Fis-type [Streptococcus suis 89/1591]
Length = 284
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 143/287 (49%), Gaps = 19/287 (6%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIKEGD-QYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL +FP+ ++ + D S+ GD +Y++ + L+E+ER LL + L + +P
Sbjct: 5 ELAGWFPQAKLSQ----EADAQSLALGDGRYLNLADADLTERERYLLSL-LSHPQEQKP- 58
Query: 61 GSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILP------- 113
SPWQ YL Q + PQ E QFI++ H + D ++ Q M+ L LP
Sbjct: 59 SSPWQSYL-HGQSSLPQAVEAIQFIHV-HLWSQKDAQLDAWQTMMTDL---LPSQLAQVQ 113
Query: 114 ISATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEE 173
+S+ F+ Q+ L D L LE DFGL LT VG W + A + ++ E
Sbjct: 114 LSSQDYLFIIEQSRWTDYQTILADTLSALEFDFGLRLTFLVGQVWSRQLADRWSQLYQAE 173
Query: 174 CQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSE 233
L + +L+FS L LW + + L Q DM D++ ALW+E
Sbjct: 174 AALFAHWRAHYHQSTVLSFSQLFLWGQGRAGLEFGMIKASMLQLIDQQDMQDIILALWTE 233
Query: 234 HGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
+ +TAQ LYIHRN+LQY+LDK+ +GL LK L DL+F + LL
Sbjct: 234 GAVVTKTAQILYIHRNTLQYRLDKWQDLTGLQLKDLTDLSFCYQVLL 280
>ref|YP_001449670.1| leucine-rich protein [Streptococcus gordonii str. Challis substr.
CH1]
gb|ABV09531.1| leucine-rich protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 291
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 8/286 (2%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIKEGDQ-YVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
EL FP+ + P D +S++ Q ++ L+++E+ LL + + V
Sbjct: 5 ELLALFPKASLQDKPSQDSQKVSLRLDQQHWLVLATEDLTDREQQLLALLTEKESVFS-- 62
Query: 61 GSPWQRYLL-DHQGNPPQLYETSQFIY--LNHQQALP-DDLVELLQQMIAGLEVILPISA 116
+PW RYL+ + + P E QFI+ L H +A +++++ ++ S
Sbjct: 63 QNPWYRYLVSESEETLPHEVEALQFIHCHLFHYEAESISAWLDMMRTLLTNKVAYFQTSP 122
Query: 117 TQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQL 176
F+ Q + V L D+L +E DF L L + +G W + L + ++ E L
Sbjct: 123 QDYIFVLDQGQQLAVKDLLRDVLSAVEYDFNLRLAVLIGQVWPRSVKDELPQLYQAENSL 182
Query: 177 LTAYLRQQSGRKLLTFSGLMLWSL-LSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHG 235
T +L + L FS L LW L + T L L R+ HQ + Q + +++ ALW
Sbjct: 183 FTQWLNRYQQSLALPFSQLFLWGLDEAKDTLLPLKRRLHQLIEGQEQLTEIILALWENGA 242
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+ + AQ+LYIHRN+LQY+LDK+ + +GL LK+L DL+ + +LK
Sbjct: 243 VVTKAAQQLYIHRNTLQYRLDKWEELTGLQLKELTDLSLCYHIILK 288
>ref|YP_001199274.1| Regulator of polyketide synthase expression [Streptococcus suis
05ZYH33]
gb|ABP90875.1| Regulator of polyketide synthase expression [Streptococcus suis
05ZYH33]
Length = 286
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 22/270 (8%)
Query: 16 PLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLGSPWQRYLLDHQGNP 75
PL ++ W S+ D L+++E L+++ + Q G PW RY G P
Sbjct: 30 PLANQTWFSVDRKD---------LTDREIELIDLLMNDSSAEQ--GHPWGRYF--QGGGP 76
Query: 76 -PQLYETSQFIYLNHQQALPDD----LVELLQQMIAGLEVILPISATQTAFLCRQAISIK 130
PQ E Q I+ + +D ++++ +++ L+ + F+ QA
Sbjct: 77 LPQTLEKLQVIHAHVGHVSDEDGKVAWLDMMAKLLPNLQGYYTGNGQDYLFILHQAPLFD 136
Query: 131 VLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLL 190
V L D L T+E DFGL +T+F+G W + + E E L + +LL
Sbjct: 137 VKEILRDTLATMEFDFGLRITLFLGQIWPAKLVHSWPQLIEAEQSLFHHWRSSHHQSRLL 196
Query: 191 TFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNS 250
TF L LW+ H + R+ L + + ALW E + + AQ LYIHRN+
Sbjct: 197 TFGQLYLWAGQLH----PVLREGLASLIAHQQLEKEIVALWQEGAVITKAAQSLYIHRNT 252
Query: 251 LQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
LQY+LDK+ +GL LK+L DLA ++ ++
Sbjct: 253 LQYRLDKWFDWTGLQLKELTDLAVCYMVIM 282
>ref|YP_001201468.1| Regulator of polyketide synthase expression [Streptococcus suis
98HAH33]
gb|ABP93069.1| Regulator of polyketide synthase expression [Streptococcus suis
98HAH33]
Length = 286
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 22/270 (8%)
Query: 16 PLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLGSPWQRYLLDHQGNP 75
PL ++ W S+ D L+++E L+++ + Q G PW RY G P
Sbjct: 30 PLANQTWFSVDRKD---------LTDREIELIDLLMNDSSAEQ--GHPWGRYF--QGGGP 76
Query: 76 -PQLYETSQFIYLNHQQALPDD----LVELLQQMIAGLEVILPISATQTAFLCRQAISIK 130
PQ E Q I+ + +D ++++ +++ L+ + F+ QA
Sbjct: 77 LPQTLEKLQVIHAHVGHVSDEDGKVAWLDMMAKLLPNLQGYYTGNGQDYLFILHQAPLFD 136
Query: 131 VLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLL 190
V L D L T+E DFGL +T+F+G W + + E E L + +LL
Sbjct: 137 VKEILRDTLATMEFDFGLRITLFLGQIWPAKLVHSWPQLIEAEQSLFHHWRSSHHQSRLL 196
Query: 191 TFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNS 250
TF L LW+ H + R+ L + + ALW E + + AQ LYIHRN+
Sbjct: 197 TFGQLYLWAGQLH----PVLREGLASLIAHQQLEKEIVALWQEGAVITKAAQSLYIHRNT 252
Query: 251 LQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
LQY+LDK+ +GL LK+L DLA ++ ++
Sbjct: 253 LQYRLDKWFDWTGLQLKELTDLAVCYMVIM 282
>ref|NP_815868.1| DNA-binding protein, Fis family [Enterococcus faecalis V583]
gb|AAO81938.1| DNA-binding protein, Fis family [Enterococcus faecalis V583]
Length = 283
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 24/277 (8%)
Query: 17 LGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLGS-PWQRYLLDHQGNP 75
+G + SI DQ+ K+ LS KE+ LLE E G+ PW YL P
Sbjct: 19 IGSEATYSIPVDDQFFIVNKAFLSIKEQHLLEALFPISENPTITGNHPWFSYLFQQAKLP 78
Query: 76 PQLYETSQFIYLNHQQALPDDLVELLQQMIAGL--EVILPISATQTAFLCRQAISIKVLR 133
+ F L Q + +L Q + + + + S + ++ + S +
Sbjct: 79 AE----GTFRMLQIQTNVTKELQAEWQFNLTKMFPDTVDCFSPSNNMYILVEEQSKNTFQ 134
Query: 134 W--LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLT 191
++ + TL++DF +FVGN + + LR CF EE ++ + L S + +
Sbjct: 135 QEEIQGIFLTLDTDFDCTSAVFVGN--FYSSEDILRRCFHEEQRIFSEELNSSSRTTVFS 192
Query: 192 FSGLMLWSLLSHHTFL-------ALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRL 244
+ + L H F L + + L+ +D+ ++ ALW GN+ TA+ L
Sbjct: 193 LTDVAL------HYFTKEAMSQNVLVEYYRRLLNKDTDIQPIISALWKNQGNISSTAKDL 246
Query: 245 YIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
++HRN+L Y+L+KF +Q+GL LK++DDL F +L L K
Sbjct: 247 FMHRNTLHYRLEKFFEQTGLSLKKMDDLIFCYLLLRK 283
>ref|ZP_02186037.1| DNA-binding protein, Fis family [Carnobacterium sp. AT7]
gb|EDP67196.1| DNA-binding protein, Fis family [Carnobacterium sp. AT7]
Length = 287
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 36/290 (12%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
+LK +P + D +++ DQ++HF K L+ E+ LL + + Q
Sbjct: 5 QLKSIYPSTFLTDDIKNDPAYLTFPYQDQWIHFDKKQLTASEKELLTLLFNKDTTGQNAE 64
Query: 62 SP---WQRYLLDHQGNPP---QLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPIS 115
P WQ++L+++ +PP +Y QF +L L + E +
Sbjct: 65 IPQSKWQKFLIENNPSPPIEVGVYRVIQFEINKKDTRFDKNL--WLSSFKSFFEDV---- 118
Query: 116 ATQTAFLCRQAISIKVLRW---------LEDLLPTLESDFGLALTMFVGNAWYQVAAGTL 166
Q AF + + R+ L T++ DF T ++G W +
Sbjct: 119 --QEAFFVNDHYGLLIHRYSGYSITQDETTGFLQTIDDDFSTKTTGYIGQYW--DISLHF 174
Query: 167 RECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTR-----QFHQFLSPQS 221
++ F+EE + L++ +++ + S + L +++ ALT+ Q + L+
Sbjct: 175 KKLFQEEQTIFFNQLKK--NKQVFSLSDVAL----NYYASEALTKSPIIQQLKKDLASHP 228
Query: 222 DMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++ +++ A+W GN+ A++LYIHRN+LQY+LD+F SGL LK +D
Sbjct: 229 EIKELIAAIWLNQGNISLAAKQLYIHRNTLQYRLDRFFDDSGLSLKNRND 278
>ref|ZP_01941684.1| hypothetical protein LMRG_01969 [Listeria monocytogenes 10403S]
gb|EBA22571.1| hypothetical protein LMRG_01969 [Listeria monocytogenes 10403S]
Length = 293
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 22/287 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 6 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 65
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L ++ N + Y +QF I +++ + + L + ++
Sbjct: 66 STQFWFDLLFGNKELAITNEKETYRITQFHIKTTTTKSMLQEWQKALLSFFSPEAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 STNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 184 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYL 282
>ref|NP_466249.1| hypothetical protein lmo2727 [Listeria monocytogenes EGD-e]
ref|YP_015302.1| hypothetical protein LMOf2365_2714 [Listeria monocytogenes str. 4b
F2365]
ref|ZP_01945167.1| hypothetical protein LMSG_00149 [Listeria monocytogenes HPB2262]
emb|CAD00940.1| lmo2727 [Listeria monocytogenes]
gb|AAT05479.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
F2365]
gb|EBA35848.1| hypothetical protein LMSG_00149 [Listeria monocytogenes HPB2262]
Length = 293
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 22/287 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 6 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 65
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L ++ N + Y +QF I +++ + + L + ++
Sbjct: 66 STQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTKSMLQEWQKALLSFFSPEAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 STNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 184 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYL 282
>ref|ZP_02278347.1| hypothetical protein LmonFS_17155 [Listeria monocytogenes FSL
J1-194]
ref|ZP_02285688.1| hypothetical protein LmonoFSL_22291 [Listeria monocytogenes FSL
R2-503]
Length = 324
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 127/287 (44%), Gaps = 22/287 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 37 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 96
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L ++ N + Y +QF I + + + + L + ++
Sbjct: 97 STQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTKNMLQEWQKALLSFFSPEAELIMF 156
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 157 STNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 214
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 215 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 266
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L
Sbjct: 267 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYL 313
>ref|NP_786843.1| regulator [Lactobacillus plantarum WCFS1]
emb|CAD65721.1| regulator [Lactobacillus plantarum WCFS1]
Length = 288
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 22/288 (7%)
Query: 2 ELKDYFPEMQVGPHPLGDKDWMSIK-EGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPL 60
+L +P+ + P P K+ + + + +Y+ + LS +E LLE+ L +
Sbjct: 5 QLLSIYPQATISPRPSVAKNMVCVAIDAGKYICIDTTNLSNRELSLLEL-LTHTKSNATT 63
Query: 61 GSPWQRYLLDHQGNPPQLYETS----QF-IYLNHQQALPDDLVELLQQMIAGLEVILP-- 113
G W +L PQ QF ++ + A D + L + E +L
Sbjct: 64 GDAWSEFLTGRHTTAPQTTAKKLQILQFRVHFTERHA---DRSQWLSAIADTFEHVLHRA 120
Query: 114 -ISATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEE 172
I+A L ++++ L LL +++DF +F+G+ ++ L F
Sbjct: 121 FITADSGYLLLTESLT-DTSADLASLLALIDNDFYTNTHLFIGST--HRSSQDLPTTFAL 177
Query: 173 ECQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWS 232
E QL + Q ++T S +L L++ H + LS SD ++ AL+
Sbjct: 178 EQQLFS----QNQQDTIVTLSSSLLPFLVNQHQ--PELQALRNSLSLDSDNKQLIRALYH 231
Query: 233 EHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
GN+ Q A +L++HRN+L Y+++KF + +GL+LK +DDL + +L L
Sbjct: 232 TQGNVRQAASKLFLHRNTLLYRIEKFERCNGLNLKNMDDLVYCYLLTL 279
>ref|ZP_00230138.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
ref|ZP_01928651.1| hypothetical protein LMHG_00433 [Listeria monocytogenes FSL N1-017]
gb|EAL10068.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gb|EBA27558.1| hypothetical protein LMHG_00433 [Listeria monocytogenes FSL N1-017]
Length = 293
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 127/287 (44%), Gaps = 22/287 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 6 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 65
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L ++ N + Y +QF I + + + + L + ++
Sbjct: 66 STQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTKNMLQEWQKALLSFFSPEAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 STNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 184 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYL 282
>ref|ZP_00233143.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
ref|ZP_01933885.1| hypothetical protein LMMG_01574 [Listeria monocytogenes F6900]
ref|ZP_01936398.1| hypothetical protein LMOG_02349 [Listeria monocytogenes J0161]
ref|ZP_01939479.1| hypothetical protein LMPG_01493 [Listeria monocytogenes J2818]
gb|EAL07068.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gb|EBA19368.1| hypothetical protein LMOG_02349 [Listeria monocytogenes J0161]
gb|EBA24809.1| hypothetical protein LMPG_01493 [Listeria monocytogenes J2818]
gb|EBA33134.1| hypothetical protein LMMG_01574 [Listeria monocytogenes F6900]
Length = 293
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 22/291 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 6 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 65
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L + N Y +QF I +++ + + L + ++
Sbjct: 66 STQFWFDLLFGNSEMAITNEKDTYRITQFHIKTTTTKSMLQEWQKALLSFFSPEAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 STNYGVIIEKSTGSLLGEEELVAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 184 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L L+
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYLSTLQ 286
>ref|ZP_02310271.1| hypothetical protein LmonocytFSL_22448 [Listeria monocytogenes FSL
J2-003]
Length = 324
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 22/291 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 37 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 96
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L + N Y +QF I +++ + + L + ++
Sbjct: 97 STQFWFDLLFGNSEMAITNEKDTYRITQFHIKTTTTKSMLQEWQKALLSFFSPEAELIMF 156
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 157 SPNYGVIIEKSTGSLLGEEELVAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 214
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 215 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 266
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L L+
Sbjct: 267 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYLSTLQ 317
>ref|YP_850877.1| hypothetical protein lwe2680 [Listeria welshimeri serovar 6b str.
SLCC5334]
emb|CAK22098.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 295
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 22/291 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQC--EVLQP 59
LK+ +P + V +P+ D +S E Y PKS LSE+E LL + +
Sbjct: 6 LKNRYPNIIVSKNPIKSTTDTISFFEEPYYFTIPKSNLSEEEATLLHTLFPEPLPTFTKE 65
Query: 60 LGSPWQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
W L ++ N + Y +QF I ++L + + L + ++
Sbjct: 66 STQFWFDLLFGNEEVAITNEKETYRITQFHIKTTMTKSLLQEWQKALLSFFSPDAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
SA + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 SANYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDKLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+ T + + F ++H L
Sbjct: 184 AIFNYNNREVVQTVASESLKVIAIRMKESLI--------TNELNSFFHQDDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L L+
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYLATLQ 286
>ref|ZP_01931294.1| hypothetical protein LMIG_00145 [Listeria monocytogenes FSL N3-165]
gb|EBA30446.1| hypothetical protein LMIG_00145 [Listeria monocytogenes FSL N3-165]
Length = 293
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 22/291 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL + P
Sbjct: 6 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLFPEPLPTFPKE 65
Query: 62 SP--WQRYLLDHQ----GNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
S W L + N Y +QF I +++ + + L + ++
Sbjct: 66 STQFWFDLLFGNSEMAITNEKDTYRITQFHIKTTTTKSMLQEWQKALLSFFSPEAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
S + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 SPNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL+++ L FHQ ++H L
Sbjct: 184 AIFNHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLK 281
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L L+
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYLSTLQ 286
>ref|ZP_02688897.1| hypothetical protein LmonFSL_17104 [Listeria monocytogenes FSL
J2-071]
Length = 293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 126/289 (43%), Gaps = 26/289 (8%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLG 61
LK+ +P + V +P+ D +S E Y PKS LSE+E +LL E L
Sbjct: 6 LKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLSEEEAMLLHTLF--PEPLPTFS 63
Query: 62 SPWQRYLLD--------HQGNPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVIL 112
++ D N + Y +QF I +++ + + L + ++
Sbjct: 64 KESTQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTKSMLQEWQKALLSFFSPEAELI 123
Query: 113 PISATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEE 172
S + + S+ L + TLE+DF + T F+G + LR F E
Sbjct: 124 MFSTNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNDRLRGLFAE 181
Query: 173 ECQLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVH 228
E + R+ + L + M SL+++ L FHQ ++H
Sbjct: 182 ERAIFDHNNREVVQTVASESLKVIALRMKESLITNE----LNDLFHQ----DDTWIPLIH 233
Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
L+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L
Sbjct: 234 TLFKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYL 282
>ref|NP_472203.1| hypothetical protein lin2875 [Listeria innocua Clip11262]
emb|CAC98101.1| lin2875 [Listeria innocua]
Length = 293
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 22/287 (7%)
Query: 3 LKDYFPEMQVGPHPL-GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQC--EVLQP 59
LK+ +P + V +P+ D S E Y PKS LSE+E LL + +
Sbjct: 6 LKNRYPNIVVSKNPIKSTTDTFSFFEEPYYFTIPKSDLSEEEAALLHTLFPKPLPTFTKE 65
Query: 60 LGSPWQRYLLDHQG----NPPQLYETSQF-IYLNHQQALPDDLVELLQQMIAGLEVILPI 114
W L ++ + + Y +QF I +++ + + L + ++
Sbjct: 66 STQFWFDLLFGNEAVTITSEKETYRITQFHIKTATTKSMLQEWQKALLSFFSPDAELIMF 125
Query: 115 SATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEEC 174
SA+ + + S+ L + TLE+DF + T F+G + LR F EE
Sbjct: 126 SASYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQSTFFMG--LFHPLNAKLRGLFAEER 183
Query: 175 QLLTAYLRQQ----SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL 230
+ R+ + L + M SL++ L FHQ ++H L
Sbjct: 184 TIFDHNNREVVQTVASESLKVIALRMKESLITSE----LNNLFHQ----DDTWIPLIHTL 235
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ GN+ TA+ L++HRN++QY+LDKF +Q+ L L+++D L A+L
Sbjct: 236 FKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDGLLLAYL 282
>ref|ZP_01170673.1| hypothetical protein B14911_15357 [Bacillus sp. NRRL B-14911]
gb|EAR66757.1| hypothetical protein B14911_15357 [Bacillus sp. NRRL B-14911]
Length = 298
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 138 LLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLML 197
++ E+DF + + +++G + A LR FEEE LR ++LTF
Sbjct: 149 IIQAFETDFYVKMYVYLGK--FFPAGDQLRGGFEEEKDFFGRALRLMPHERVLTFEKAFP 206
Query: 198 WSLLSHHTFLALTRQFHQFLSP---QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYK 254
L++ Q L P S++ + A N +A++LYIHRN+LQY+
Sbjct: 207 SCLVAEMKPSLRESLDTQLLGPAAEDSELLATIKAFLENGSNATLSAKKLYIHRNTLQYR 266
Query: 255 LDKFAQQSGLHLKQLDDLAFAHLFLL 280
LDKF++++G++LK ++ +L L
Sbjct: 267 LDKFSEKTGVNLKDFNNAVTVYLACL 292
>ref|ZP_00603322.1| Helix-turn-helix, Fis-type [Enterococcus faecium DO]
gb|EAN10353.1| Helix-turn-helix, Fis-type [Enterococcus faecium DO]
Length = 285
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 28/278 (10%)
Query: 7 FPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLGSPWQR 66
+P+ Q P + D +S D ++ + LS++E LL+ + PW
Sbjct: 10 YPQAQKKNSPASEADILSFAIDDAFIWIKQDSLSQQETSLLKALFPV--INDQKKHPWYH 67
Query: 67 YLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISA-----TQTAF 121
YL + + E S + H ++ + L + Q I L SA T T
Sbjct: 68 YLF---KDASCVQEKSFRLIQLHVESKGEFLKKEWQDTILEL---FRYSADFFFYTDTDA 121
Query: 122 LCRQAISIKVLRWLE--DLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTA 179
L + I+ L E + +L++DF ++FVG+ + L F EE ++
Sbjct: 122 LLVEQINRDYLDATEINGIFLSLDADFDTTTSVFVGS--FHSPGTDLVPLFAEERKI--- 176
Query: 180 YLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSP------QSDMADVVHALWSE 233
+L +Q+ L T S ++ H + T + + + Q++M ++ LW+E
Sbjct: 177 FLTEQNN--LYTHSRTFSMQDVALHYYTKDTVKDSKLIKSYIELIKQNEMEVIIQELWNE 234
Query: 234 HGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
GN+ A+ L++HRN+L+Y+++KF +QSG +LK+ +D
Sbjct: 235 LGNVSSAAKTLFLHRNTLKYRIEKFQEQSGFNLKKAND 272
>ref|ZP_01861709.1| hypothetical protein BSG1_09903 [Bacillus sp. SG-1]
gb|EDL63233.1| hypothetical protein BSG1_09903 [Bacillus sp. SG-1]
Length = 304
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 48/298 (16%)
Query: 1 MELKDYFPEMQVGPHPLGDKD----WMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEV 56
++L+ +P+ ++ P ++D W++ + ++++ PK L++ E LL C +
Sbjct: 3 LKLQQKYPQARLHKVPPSEEDPETLWLTDEANEEFLAIPKHLLTQSEIDLL------CSL 56
Query: 57 LQ---PLGS---------PWQRYLLD-----HQGNPPQLYETSQFIYLNHQQALPDDLV- 98
P G+ W YL D +P Y QF ++ + +DL+
Sbjct: 57 FSEAAPSGNWNNDTLESRSWHDYLYDGMPLREDVSPKDHYRVIQFAI---KENVENDLLK 113
Query: 99 ELLQQMIAGLEVILPISATQTAFLCRQAISIKVLRWL---EDLLP---TLESDFGLALTM 152
E + + A VI+ S+ A + +Q W E+LL +E DF ++ T
Sbjct: 114 EAFRSIFAEQAVIVFTSSGTGAIVEKQT------EWSLPEEELLSAAAVIEGDFFVSPTF 167
Query: 153 FVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLLSH---HTFLAL 209
F+G + F+EE L + + S ++ TF +L + T ++
Sbjct: 168 FIGR--FYAINDRFPSFFKEEKNLFSFAEKNISKDRVFTFPSTFPSFVLHYVPKQTKTSM 225
Query: 210 TRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLK 267
Q + ++ + N QTA+ L++HRNS+QY++DKF ++ G+ +K
Sbjct: 226 FADIIQLFAEDEELKKTIKTYLENQSNTSQTAKVLFMHRNSVQYRIDKFIEKIGIDIK 283
>ref|NP_391761.1| hypothetical protein BSU38820 [Bacillus subtilis subsp. subtilis
str. 168]
dbj|BAA11722.1| yxkF [Bacillus subtilis]
emb|CAB15908.1| yxkF [Bacillus subtilis subsp. subtilis str. 168]
Length = 297
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 117/264 (44%), Gaps = 12/264 (4%)
Query: 28 GDQYVHFPKSCLSEKERLLLEVGL------GQCEVLQPLGSPWQRYLLDHQGNPPQLYET 81
+Y+ PK+ +SEKE L+L+ L Q + P + W +L P + +
Sbjct: 31 NQRYISIPKTEISEKEVLVLQSFLTPADEGNQLSMKSPEENKWFSFLFSRGELPAYIKKR 90
Query: 82 SQFIYLN-HQQALPDDLVELLQQMIAGLEVILPISATQTAFLCRQAISIKVLRWLEDLLP 140
++F++ + + E ++ VI+ I + + +++ + LE L
Sbjct: 91 TRFVHFHLFGKIERTSFTEAVRHFWPVSFVIVWIHEDRGVIVEQESEAAAEKDELESLAK 150
Query: 141 TLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLR---QQSGRKLLTFSGLML 197
LESDF ++ + G +Y+ + E+ L A R QS + F L+L
Sbjct: 151 VLESDFYFSVRFYAGR-FYEPDECLRKHYAREQAYFLFAEKRLPQVQSVTFEMIFPFLLL 209
Query: 198 WSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDK 257
+ L L+ + +S++ + + N+ TA++L++HRNSLQY++DK
Sbjct: 210 ETEKEKLETL-LSEEAELLFGSESELRKTIKLFIENNSNVTLTAKKLHLHRNSLQYRIDK 268
Query: 258 FAQQSGLHLKQLDDLAFAHLFLLK 281
F ++SG+ +K A+ L+
Sbjct: 269 FIERSGIDIKSYKGALLAYFICLQ 292
>ref|ZP_02321421.1| hypothetical protein LmonocytoFSL_18686 [Listeria monocytogenes FSL
J2-064]
Length = 245
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 141 TLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQ----SGRKLLTFSGLM 196
TLE+DF + T F+G + LR F EE + R+ + L + M
Sbjct: 104 TLENDFYIQSTFFMG--LFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRM 161
Query: 197 LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLD 256
SL+++ L FHQ ++H L+ GN+ TA+ L++HRN++QY+LD
Sbjct: 162 KESLITNE----LNDLFHQ----DDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLD 213
Query: 257 KFAQQSGLHLKQLDDLAFAHL 277
KF +Q+ L L+++D L A+L
Sbjct: 214 KFYEQTNLSLRKMDGLLLAYL 234
>ref|ZP_02913994.1| putative transcriptional regulator, PucR family [Geobacillus sp.
WCH70]
gb|EDT34817.1| putative transcriptional regulator, PucR family [Geobacillus sp.
WCH70]
Length = 300
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 2 ELKDYFPEMQVGPHPLGDKD---WMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQC-EVL 57
+LK Y+ + V + D D W K+GD+ + K LS++E+ LL + L +V
Sbjct: 4 QLKSYYKDAIVINEQVADTDAYEWFYTKDGDK-IGICKQRLSKQEKQLLSIFLTPIPDVS 62
Query: 58 QPLGS---PWQRY-------LLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAG 107
+ + W R+ LL H + Y F ++ DD +++ + +
Sbjct: 63 RTISDEEMAWHRWVTHGDSTLLQHFSSQSPYYRFIHF-FIKGSVVNKDDFFDVISGLFSE 121
Query: 108 LEVILPISATQTAFL-CRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTL 166
+I+ Q + +Q ++ L + E ++ TL +DF + + +F+G+ L
Sbjct: 122 HIIIVWEHDYQGVIIEKKQKPTLDPLPFAE-IIDTLSTDFYITIHLFIGHI--HPYGDHL 178
Query: 167 RE--CFEEEC-QLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDM 223
E C E++C QL Y+ Q+ ++ L+L S + + F + L +S
Sbjct: 179 YELFCHEKQCFQLAQTYMPTQTVYQMEDVIPLLLIHGSSELEMIKKSLPFLETLDDES-- 236
Query: 224 ADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
++ + + N+ A++LY+HRNSLQY++DKF +++G+ +K +L +L
Sbjct: 237 LHIIKTFFQCNLNVSLAAKKLYMHRNSLQYRIDKFIEKTGIDIKHFKGAVAVYLAIL 293
>ref|ZP_02252527.1| hypothetical protein BcerAH_02510 [Bacillus cereus AH187]
ref|ZP_02595663.1| hypothetical protein BcerH_09927 [Bacillus cereus H3081.97]
Length = 287
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 36/297 (12%)
Query: 2 ELKDYFPE-MQVGPHPLG-DKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQP 59
+LK Y+ E +++ L D W + EG++ V K L +KE LL +L P
Sbjct: 4 QLKTYYGEDIKINEAVLSKDYSWFLV-EGNK-VGIRKIRLHQKEHQLL------SSILTP 55
Query: 60 LGS----------PWQRYLLDHQGNPPQLYETSQFIYLNHQQAL--PDDLVELLQQMIAG 107
+ + W L + P + + +F++ Q++ ++ + LQ M +
Sbjct: 56 IHADTFYKTEKEKSWYEALYRNNNIPIR---SVRFLHFFTTQSIVEREEFQDALQSMFSF 112
Query: 108 LEVILPISATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLR 167
+L ++ + + I+ VL + L TLE+DF ++L+ FVG + Q T
Sbjct: 113 TTTMLWETSQAGVLILEENITESVL---QTALDTLETDFFISLSFFVGRRYSQTTEFTYL 169
Query: 168 ECFEEEC-QLLTAYLRQQSGRKLLTFSGLMLWSL---LSHHTFLALTRQFHQFLSPQSDM 223
+E +L+ YL +K+ L+ + L L T Q + +S ++
Sbjct: 170 YQWERTLFSVLSPYL----SKKITYIEQLLPYQLMISLPKEERKKYTNQLLENISKDKEL 225
Query: 224 ADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
D V + + N+ A++LY+HRN+LQY++DKF +++G+++K + ++ L
Sbjct: 226 IDSVKVFFQCNLNVSLAAKQLYLHRNTLQYRIDKFIEKTGINIKTFEGAVAVYMAFL 282
>ref|ZP_02290664.1| hypothetical protein LmonocyFSL_20761 [Listeria monocytogenes FSL
J1-208]
Length = 245
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 141 TLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQ----SGRKLLTFSGLM 196
TLE+DF + T F+G + LR F EE + R+ + L + M
Sbjct: 104 TLENDFYIQSTFFMG--LFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRM 161
Query: 197 LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLD 256
SL+++ L FHQ ++H L+ GN+ TA+ L++HRN++QY+LD
Sbjct: 162 KESLITNE----LNDLFHQ----DDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLD 213
Query: 257 KFAQQSGLHLKQLDDLAFAHL 277
KF +Q+ L L+++D L A+L
Sbjct: 214 KFYEQTNLSLRKMDGLLLAYL 234
>ref|ZP_02288143.1| hypothetical protein LmonocFSL_21886 [Listeria monocytogenes FSL
J1-175]
Length = 214
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 14/145 (9%)
Query: 141 TLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQ----SGRKLLTFSGLM 196
TLE+DF + T F+G + LR F EE + R+ + L + M
Sbjct: 73 TLENDFYIQSTFFMG--LFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRM 130
Query: 197 LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLD 256
SL+++ L FHQ ++H L+ GN+ TA+ L++HRN++QY+LD
Sbjct: 131 KESLITNE----LNDLFHQ----DDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLD 182
Query: 257 KFAQQSGLHLKQLDDLAFAHLFLLK 281
KF +Q+ L L+++D L A+L L+
Sbjct: 183 KFYEQTNLSLRKMDGLLLAYLSTLQ 207
>ref|ZP_02283654.1| hypothetical protein LmonL_24353 [Listeria monocytogenes LO28]
Length = 218
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 14/145 (9%)
Query: 141 TLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQ----SGRKLLTFSGLM 196
TLE+DF + T F+G + LR F EE + R+ + L + M
Sbjct: 77 TLENDFYIQSTFFMG--LFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRM 134
Query: 197 LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLD 256
SL+++ L FHQ ++H L+ GN+ TA+ L++HRN++QY+LD
Sbjct: 135 KESLITNE----LNDLFHQ----DDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLD 186
Query: 257 KFAQQSGLHLKQLDDLAFAHLFLLK 281
KF +Q+ L L+++D L A+L L+
Sbjct: 187 KFYEQTNLSLRKMDGLLLAYLSTLQ 211
>gb|AAC62410.1| leucine-rich protein transcriptional regulator [Bacillus firmus]
Length = 296
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 119/289 (41%), Gaps = 16/289 (5%)
Query: 4 KDYFPEMQVGPHPLGDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCE----VLQP 59
K P PHP + W+ I + + F + L+EKE LL + + +
Sbjct: 11 KAIVPAHITPPHP--EVLWL-IDDSASLLGFWRDQLNEKETALLTYFYKEYQHTPKAVTY 67
Query: 60 LGSPWQRYLLDHQGNPPQLYETSQFIYLNHQQALPD--DLVELLQQMIAGLEVILPISAT 117
W+ +LLD P + + I+ + +++ D L Q+ + I+ +
Sbjct: 68 TDKEWRAWLLDSDVRQPNVERPVRLIHFHLSESIDDYEALSSTWQEAFPHVITIVWVHQQ 127
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
+ +E + DF L L +G + RE F + +L
Sbjct: 128 YGVVVLESLDGYGDEMDIESFAEAISMDFYLDLYTLIG---IESTVENSRESFLYQHELF 184
Query: 178 TAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQ----SDMADVVHALWSE 233
L + + + ++L L+ + T + R + +S + ++ V +S
Sbjct: 185 QYLLSKSHPKHVYKEQEVLLLYLMRNSTGKEMDRIIQRLISVELLNDKELLTTVGTYFSH 244
Query: 234 HGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
+ N Q A+ L++HRNSLQY++DKF ++G+ +KQ D A ++ LL Y
Sbjct: 245 NLNTTQAAKALHMHRNSLQYRIDKFVDRTGIDIKQFSDAALVYMLLLHY 293
>ref|YP_001423165.1| YxkF [Bacillus amyloliquefaciens FZB42]
gb|ABS75934.1| YxkF [Bacillus amyloliquefaciens FZB42]
Length = 297
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 135 LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEE---CQLLTAYLRQQSGRKLLT 191
+ + LE DF ++ F+G Y A LR + E CQ+ YL Q S LT
Sbjct: 145 IASFVKILEGDFYFSVRFFIGR--YYGAGERLRLHYRREQQYCQIGRRYLPQLS---TLT 199
Query: 192 FSGLMLWSLLSHHTFLALTRQFHQ----FLSPQSDMADVVHALWSEHGNLVQTAQRLYIH 247
+ + ++L+ + L+ H+ + ++ + + N+ T++RL++H
Sbjct: 200 -AETVFPAMLTEESREKLSALLHEEAVLLFQKEPELKHTIQTFIEHNSNMSLTSKRLHLH 258
Query: 248 RNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
RNSLQY++DKFA++SG+ +K A+ L+Y
Sbjct: 259 RNSLQYRIDKFAERSGIDIKTYRGALLAYFICLQY 293
>ref|YP_083228.1| hypothetical protein BCZK1633 [Bacillus cereus E33L]
gb|AAU18620.1| conserved hypothetical protein [Bacillus cereus E33L]
Length = 287
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 135 LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSG 194
L+ L TLE+DF ++L+ FVG + Q + ++ E L +YL +K+
Sbjct: 137 LQTALDTLETDFFISLSFFVGRHYTQ--TNQVSHLYQWERNLF-SYLSPYLSKKITYIEQ 193
Query: 195 LM---LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSL 251
L+ L +LL T + + +S ++ + + + + N+ A++LY+HRN+L
Sbjct: 194 LLPYQLMTLLPKEKREKYTNRLLENVSNDKELIESIKVFFQCNLNVSLAAKQLYLHRNTL 253
Query: 252 QYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QY++DKF +++GL++K + +L L
Sbjct: 254 QYRIDKFIEKTGLNIKTFEGAVAVYLAFL 282
>ref|NP_978214.1| fis-type helix-turn-helix domain protein [Bacillus cereus ATCC
10987]
gb|AAS40822.1| fis-type helix-turn-helix domain protein [Bacillus cereus ATCC
10987]
Length = 287
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 135 LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSG 194
L+ L TLE+DF ++L+ FVG + Q + ++ E L +YL +K+
Sbjct: 137 LQTALDTLETDFFISLSFFVGRHYTQ--TNQVSHLYQWERNLF-SYLSPYLSKKITYIEQ 193
Query: 195 LM---LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSL 251
L+ L +LL T + + +S ++ + + + + N+ A++LY+HRN+L
Sbjct: 194 LLPYQLMTLLPKEKREKYTNRLLENVSNDKELIESIKVFFQCNLNVSLAAKQLYLHRNTL 253
Query: 252 QYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QY++DKF +++GL++K + +L L
Sbjct: 254 QYRIDKFIEKTGLNIKTFEGAVAVYLAFL 282
>ref|ZP_01697006.1| hypothetical proteins-like [Bacillus coagulans 36D1]
gb|EAY43752.1| hypothetical proteins-like [Bacillus coagulans 36D1]
Length = 295
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 120/304 (39%), Gaps = 42/304 (13%)
Query: 3 LKDYFPEMQVGPHPLGDKD--WMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEV---- 56
LK +P + P+ K W ++E +Y L+ +E LLL+ + +
Sbjct: 5 LKTRYPNACIANEPIAAKPLLWFWMEEEKKYFGIDPVELTPEETLLLKTLFPKFQENTAG 64
Query: 57 LQPLGSPWQRYLLDHQGNPP---QLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILP 113
S W YL + P +Y +QF L + + E ++ M +++
Sbjct: 65 TTSEASKWYDYLFLPDADAPVHDGVYRVTQFA-LAKAGSDVSGVQEAIKNMFVPDVLVIV 123
Query: 114 ISATQTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEE 173
+ + + ++ +I L L E DF + +++G + ++AA L+ F E
Sbjct: 124 TNQLEGIVIEEKSETIATKDDLTASLRAFEGDFYTPVLLYLGE-FQEMAA--LKHHFSFE 180
Query: 174 CQLLTAYLRQQSGRKLLTF----------------SGLMLWSLLSHHTFLALTRQFHQFL 217
+L ++ L T GL+ SL H
Sbjct: 181 RRLFEFAKSRRKTSALFTVHSLLPLYLLSNLPESEKGLLFQSL-------------HGLF 227
Query: 218 SPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+M + N TA++L+IHRNSLQY+++KF +++GL+LK D FA+
Sbjct: 228 EEDREMGQTIKRYLENFANASLTAKQLFIHRNSLQYRIEKFEEKTGLNLKHFTDAIFAYF 287
Query: 278 FLLK 281
L+
Sbjct: 288 ACLE 291
>ref|NP_242007.1| hypothetical protein BH1141 [Bacillus halodurans C-125]
dbj|BAB04860.1| BH1141 [Bacillus halodurans C-125]
Length = 297
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 111/279 (39%), Gaps = 26/279 (9%)
Query: 19 DKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVL-QPLG---SPWQRYLLDHQGN 74
D DW + D + ++ ++ +ER+LL + L + QP W ++ QG
Sbjct: 26 DIDWFRTENHD-VIGIKRNLITSRERVLLNMLLEPYSLAPQPKTVEEEQWAAWIFKGQGT 84
Query: 75 PPQLYETSQFIYLNHQQALPDDLVELLQQM---IAGLEVILPISATQTAFLCRQAISIKV 131
PP Q ++ Q P D E Q+ I IL +T + SI
Sbjct: 85 PPA---KGQLQLIHFQLDQPVDQYEAFQEAWTSIGHDSFILLWQTEKTGIVLLFNHSIDD 141
Query: 132 LRWLEDLLPTLESDFGLALTMFVG--------NAWYQVAAGTLRECFEEECQLLTAYLRQ 183
LE L SDF + + VG A ++ + E + + Y +
Sbjct: 142 PLALEGFTEALSSDFYFNVFLLVGLPHQTEATPALFRFEQHAFQTAVERKSKQEIWYGVE 201
Query: 184 QSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQR 243
L + + L H RQ H+ L QS H L N+ A+
Sbjct: 202 AIPHLLFSEATTNTKRDLIDHLLPEDVRQDHELL--QSITCYFKHNL-----NITSAARS 254
Query: 244 LYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
L++HRNSLQY++DKF +++G+ ++Q + +L LL Y
Sbjct: 255 LHLHRNSLQYRVDKFIEKTGIDIRQFSQASVVYLALLLY 293
>ref|ZP_02850655.1| putative transcriptional regulator, PucR family [Paenibacillus sp.
JDR-2]
gb|EDS49450.1| putative transcriptional regulator, PucR family [Paenibacillus sp.
JDR-2]
Length = 379
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 220 QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+++M + +S N+ +TA++LYIHRN+L Y+LDK Q++GL ++Q D + L
Sbjct: 311 EAEMLATLETFFSLDCNVSETAKKLYIHRNTLLYRLDKLKQETGLDVRQFRDAVLVKIIL 370
Query: 280 LKY 282
L Y
Sbjct: 371 LLY 373
>ref|YP_175011.1| regulator of polyketide synthase expression [Bacillus clausii
KSM-K16]
dbj|BAD64050.1| regulator of polyketide synthase expression [Bacillus clausii
KSM-K16]
Length = 287
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 64 WQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTAFLC 123
W YL PP T + I H Q L + L+ A E +L T F+
Sbjct: 70 WHAYLFGDGQQPP----TEETICAVHFQ-----LEKPLEDFAAFREAVLNTFPPYTCFVW 120
Query: 124 RQAISIKVL-------RWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQL 176
+ ++S +L L+ ++ +E+DF + ++ VG V + + E +L
Sbjct: 121 QNSMSGMLLFPSAAEDVDLDAVVELIETDFYIGISFMVGTP---VEGPKAKAAWRFESEL 177
Query: 177 LTAYLRQQSGRK--LLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMAD-----VVHA 229
Q+ +K +L + L LL L L + FL PQ + D V
Sbjct: 178 FACCKDDQTKKKRHVLQAAEAGLAYLLKQTPSLELEKLRAHFL-PQEIVDDKELVRTVRV 236
Query: 230 LWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
E+ N + A+ L++HRNSLQY++DKF +G+ ++ + AF L L
Sbjct: 237 YLLENMNSTKAAKTLHLHRNSLQYRIDKFVAVTGIDIRTFPNAAFVALLL 286
>ref|NP_692056.1| hypothetical protein OB1135 [Oceanobacillus iheyensis HTE831]
dbj|BAC13091.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 298
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 217 LSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAH 276
+ D + + + NL +T+++LY+HRNS+QY+LDKF + +G+ +KQ D +
Sbjct: 228 FTEDEDALETIQTFIECNLNLSETSKKLYMHRNSIQYRLDKFHESTGIDVKQFDQAITVY 287
Query: 277 LFLL 280
L ++
Sbjct: 288 LAII 291
>ref|NP_266971.1| hypothetical protein L26721 [Lactococcus lactis subsp. lactis
Il1403]
gb|AAK04913.1|AE006315_2 HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis Il1403]
Length = 223
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 137 DLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLM 196
D+ TL D G +T +VG V L E + EE ++ + QQ TFS +
Sbjct: 95 DIFQTLSQDMGEEVTAYVGRF---VEKNKLSEVYSEEYKIFES---QQ------TFSEYI 142
Query: 197 LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLD 256
L L+ L + L D +V A++ N + A+ LY+HRN+L K+
Sbjct: 143 LSESLNLSENRILQEIRKELLENPEDQK-LVEAMYKASSNQTKAAKILYVHRNTLINKIK 201
Query: 257 KFAQQSGLHLKQLDDLAFAHLFL 279
K+ Q+ GL L DL A+ L
Sbjct: 202 KYEQKYGLQLSG-SDLTLAYNLL 223
>ref|YP_001813177.1| putative transcriptional regulator, PucR family [Exiguobacterium
sibiricum 255-15]
gb|ACB60160.1| putative transcriptional regulator, PucR family [Exiguobacterium
sibiricum 255-15]
Length = 277
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 64 WQRYLLDHQGNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTAFLC 123
W+R L + F++ +DL +LL I+P+++ + +
Sbjct: 69 WRRRLEQPSSEEAHPFRMIHFLFEQLDVRTGEDLQQLLTSFFHPSSWIIPLTSNRLVVIE 128
Query: 124 RQ-AISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLR 182
R+ ++S L D L+SDF + + +G Q +G L F +L A LR
Sbjct: 129 REDSVSEN---DLHDFFTALQSDFLMDGKVLIGQ---QRQSGDLAAQF----RLEQAALR 178
Query: 183 QQSGRKLLTF-SGLMLWSLLSHHTFLALTRQFHQFLSP-QSDMADVVHALWSEHGNLVQT 240
+ + F LM +LLS+ L +F++P + + + + A + N+ T
Sbjct: 179 ELPLLHIERFLPALMRLTLLSNEVRDDL---IERFITPLERESRETIDAFCRANLNVSLT 235
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
A+ L++HRNSLQY+LD+ +Q+ + ++ + F + LL
Sbjct: 236 AKHLFLHRNSLQYRLDRLTEQTEIDIRSFEGAMFLYTLLL 275
>ref|YP_001033015.1| putative regulator [Lactococcus lactis subsp. cremoris MG1363]
emb|CAL98314.1| putative regulator [Lactococcus lactis subsp. cremoris MG1363]
Length = 223
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 137 DLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLM 196
D+ TL D G +T +VG V L E + EE ++ + QQ TFS +
Sbjct: 95 DIFQTLSQDMGEEVTAYVGRF---VEKNKLSEVYSEEYKIFES---QQ------TFSEYI 142
Query: 197 LWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLD 256
L L+ L + L D +V A++ N + A+ LY+HRN+L K+
Sbjct: 143 LSESLNLSENRILQEIRKELLENPEDQK-LVEAMYKASSNQTKAAKILYVHRNTLINKIK 201
Query: 257 KFAQQSGLHLKQLDDLAFAHLFL 279
K+ Q+ GL L DL A+ L
Sbjct: 202 KYEQKYGLQLSG-SDLTLAYNLL 223
>ref|YP_146485.1| hypothetical protein GK0632 [Geobacillus kaustophilus HTA426]
dbj|BAD74917.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 296
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 135 LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSG 194
L D+ L +DF A+ + +G + L E F E + +A R R + +
Sbjct: 147 LADMAEALAADFYTAIHLLIGP--IRSVDERLYESFLLEKECFSAARRFWPKRTVYEWED 204
Query: 195 LMLWSLLSHHTFLALTRQFHQFLSP-QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQY 253
++ L R+ FL + + + N+ A++LY+HRNSLQY
Sbjct: 205 VIPLPLFEEGAVSEKARRTLSFLDGFDEEEVRAMETFLQCNLNVSMAAKKLYMHRNSLQY 264
Query: 254 KLDKFAQQSGLHLKQLDDLAFAHLFLL 280
++DK+ +Q+G+ +K+ A +L +L
Sbjct: 265 RIDKWTEQTGVDIKRFKGAAAVYLAIL 291
>ref|ZP_01722136.1| hypothetical protein BB14905_16920 [Bacillus sp. B14905]
gb|EAZ87564.1| hypothetical protein BB14905_16920 [Bacillus sp. B14905]
Length = 301
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 10/221 (4%)
Query: 64 WQRYLLDHQGNPPQLY----ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQT 119
W ++ + PP+L Q ++N L + L E L V L ++ Q
Sbjct: 71 WYEFIYSNGDMPPKLKFNKARVIQITFINENPPL-EALKEALYNFFQEDTVFLQVAKNQF 129
Query: 120 AFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTA 179
+ + SI+ L+ T+E+DF + + +++G + +++ F+ E Q
Sbjct: 130 LLIEPEKHSIREKEDFIALIRTIEADFYVRIHLYLGEFYTINQDFSVK--FQREAQWFKE 187
Query: 180 YLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSP---QSDMADVVHALWSEHGN 236
L + +F + L LT Q + P ++ + V N
Sbjct: 188 CLHLRFAEPYYSFQTIFPILLTEQLPTSILTFIEEQIIIPLKSDKELLETVKTFCECGFN 247
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ T+++L++HRN+L Y+L KF + + +H+K LD + +
Sbjct: 248 ISLTSKKLHMHRNTLTYRLSKFQEITNIHIKNLDGVILVYF 288
>ref|ZP_01995010.1| hypothetical protein DORLON_01001 [Dorea longicatena DSM 13814]
gb|EDM63716.1| hypothetical protein DORLON_01001 [Dorea longicatena DSM 13814]
Length = 335
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
V+ + + N+ +TA+RLY+HRN+L Y+L+K +++GL ++ DD
Sbjct: 272 VYTFFDNNLNISETARRLYVHRNTLVYRLEKIQKKTGLDVRVFDD 316
>ref|YP_078256.1| hypothetical protein with helix-turn-helix domain [Bacillus
licheniformis ATCC 14580]
ref|YP_090654.1| YxkF [Bacillus licheniformis ATCC 14580]
gb|AAU22618.1| hypothetical protein with helix-turn-helix domain [Bacillus
licheniformis ATCC 14580]
gb|AAU39961.1| YxkF [Bacillus licheniformis DSM 13]
Length = 293
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
N TA+RL+IHRNSLQY++DKF +++ + ++Q ++ A +L +
Sbjct: 247 NASLTAKRLFIHRNSLQYRIDKFIERTAIDIRQFEEAAAVYLMM 290
>ref|YP_001664562.1| transcriptional regulator, CdaR [Thermoanaerobacter
pseudethanolicus ATCC 33223]
ref|YP_001662680.1| transcriptional regulator, CdaR [Thermoanaerobacter sp. X514]
gb|ABY92344.1| transcriptional regulator, CdaR [Thermoanaerobacter sp. X514]
gb|ABY94226.1| transcriptional regulator, CdaR [Thermoanaerobacter
pseudethanolicus ATCC 33223]
Length = 350
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++A + NL +TA+ LYIHRN+L Y+LDK + +GL K DD
Sbjct: 288 LNAFFRNSLNLSETARELYIHRNTLVYRLDKIFKMTGLDAKNFDD 332
>ref|YP_808846.1| Regulator of polyketide synthase expression [Lactococcus lactis
subsp. cremoris SK11]
gb|ABJ72424.1| Regulator of polyketide synthase expression [Lactococcus lactis
subsp. cremoris SK11]
Length = 223
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 137 DLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLM 196
D+ TL D G +T +VG V L E + EE ++ QS TFS +
Sbjct: 95 DVFQTLSQDMGEEVTAYVGRF---VDKNRLSEVYAEESKIF----ENQS-----TFSEYI 142
Query: 197 L---WSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQY 253
L +LL ++ + ++ + +P+ +V A++ N + A+ LY+HRN+L
Sbjct: 143 LSESLNLLENNILHEIRKELLE--NPED--QKLVKAMYKASANQTKAAKLLYVHRNTLIN 198
Query: 254 KLDKFAQQSGLHLKQLDDLAFAHLFL 279
K+ K+ Q+ GL L DL A+ L
Sbjct: 199 KIKKYEQKYGLQLSG-SDLTLAYNLL 223
>ref|ZP_02691785.1| transcriptional regulator, CdaR [Epulopiscium sp. 'N.t. morphotype
B']
Length = 365
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
V+ + N+ +T+++LYIHRN+L Y+LDK + +GL L++ DD
Sbjct: 296 VNKFFENSLNVSETSRQLYIHRNTLVYRLDKLLKMTGLDLREFDD 340
>ref|YP_001124671.1| Leucine-rich protein transcriptional regulator [Geobacillus
thermodenitrificans NG80-2]
gb|ABO65926.1| Leucine-rich protein transcriptional regulator [Geobacillus
thermodenitrificans NG80-2]
Length = 295
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 111/268 (41%), Gaps = 11/268 (4%)
Query: 21 DWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQPLGSP----WQRYLLDHQGNPP 76
+W +GD+ + K L+++E+ LL + L E + S W+R++ + + P
Sbjct: 26 EWFYTADGDE-IGIAKQRLTKREQRLLALFLTPTEHRRERESEEERVWKRWMENGDPSAP 84
Query: 77 QLYETS--QFIYLNHQQALPD--DLVELLQQMIAGLEVILPISATQTAFLCRQAISIKVL 132
+ T + I+ Q + + + E + + I+ + + L
Sbjct: 85 AMLTTPYCRLIHFTVNQPITNKTEFAETIHNLFESPITIVWDKDKNGLIIEAKQKRTAEL 144
Query: 133 RWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTF 192
L ++ L +DF + +F+G + L E F E + +A R + + +
Sbjct: 145 PLLAEMADALAADFYTTIHLFIGPV--RPVDDRLHESFLLEKECFSAARRFWPKQTVYEW 202
Query: 193 SGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQ 252
+ LLS + R D + + N+ A++LY+HRNSLQ
Sbjct: 203 EDAIPLPLLSAESDDKTDRILSFLDQFDEDEIRAMETFLQCNLNVSMAAKKLYMHRNSLQ 262
Query: 253 YKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
Y++DK+ +Q+G+ +K+ +L +L
Sbjct: 263 YRIDKWTEQTGIDIKRFKGAVAIYLAIL 290
>ref|ZP_00970385.1| COG3835: Sugar diacid utilization regulator [Pseudomonas aeruginosa
C3719]
gb|EAZ51628.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 370
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 121 FLCRQAISIKVLR-WLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTA 179
F CR L WLE +G+A + G+ + +A C + L
Sbjct: 203 FWCRPVAHADTLEHWLER---ADARGWGVA-RLCAGDPAHDLAELRASACAARD---LLD 255
Query: 180 YLRQQ-SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFL------SPQSDMADVVHALWS 232
Y R + GR+++T G L SLL + RQ L PQ +A + + +
Sbjct: 256 YARSRLPGRRVVTLDGHRLASLLFSQSDSWQVRQLLAPLQRLLDHDPQGSLAATLESWCA 315
Query: 233 EHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
G+ AQ L IHRNSL+Y+L++ A SGL L +L+
Sbjct: 316 HDGHAQACAQALGIHRNSLRYRLERIASISGLDLARLE 353
>ref|YP_001488836.1| sugar diacid utilization regulator [Bacillus pumilus SAFR-032]
gb|ABV64276.1| sugar diacid utilization regulator [Bacillus pumilus SAFR-032]
Length = 370
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 213 FHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSG---LHLKQL 269
F++ L+ + ++A + E G+L + RLYIHRN+L+Y+LDK +G H+KQL
Sbjct: 298 FYKPLTQEVELAHTLSIYIEEGGDLQRIVDRLYIHRNTLRYRLDKIQALTGKDPRHVKQL 357
Query: 270 DDLAFAHLF 278
+L A L
Sbjct: 358 MELYMAQLM 366
>ref|NP_349831.1| Possible transcriptional regulator from YAEG/LRPR family
[Clostridium acetobutylicum ATCC 824]
gb|AAK81171.1|AE007819_7 Possible transcriptional regulator from YAEG/LRPR family
[Clostridium acetobutylicum ATCC 824]
Length = 312
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 165 TLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSL---LSHHTFLALTRQFH-QFLSPQ 220
L++ ++ + L + R +++ ++ L L + + ++ + +F +F
Sbjct: 187 NLKQAYDNAIEALVLFRRFSLKEEVIDYNKLFLERMAYYMDNNLKKKIMYKFKDKFDELD 246
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLA-FAHLFL 279
S+M + + N+ TA+RL+IHRN+L Y++DK +++G +K + A F FL
Sbjct: 247 SEMLNTIDEFVKNGLNISNTAKRLFIHRNTLIYRIDKLKKETGFDIKNFKEAAVFVISFL 306
Query: 280 L 280
+
Sbjct: 307 I 307
>ref|ZP_02138518.1| carbohydrate diacid regulator [Vibrio fischeri MJ11]
gb|EDQ19999.1| carbohydrate diacid regulator [Vibrio fischeri MJ11]
Length = 381
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 215 QFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAF 274
Q P+ + + A ++ + + QT + L+IHRN+L+Y+LDK +++GL + +++D +
Sbjct: 312 QKADPKGILLKTLKAFFNHNCDSAQTCKSLHIHRNTLRYRLDKINKETGLDINKINDSTY 371
Query: 275 AHL 277
+L
Sbjct: 372 LYL 374
>ref|ZP_02329052.1| transcriptional regulator, CdaR [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 374
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
N+ +TA++LYIHRN+L Y+LDKF Q++ L ++ + LL Y
Sbjct: 322 NVSETAKKLYIHRNTLLYRLDKFKQETSLDVRNFHHAVLVKIALLLY 368
>ref|ZP_01870723.1| putative sugar diacid utilization regulator [Vibrio shilonii AK1]
gb|EDL50679.1| putative sugar diacid utilization regulator [Vibrio shilonii AK1]
Length = 380
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 32/41 (78%)
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++++ +L QT + L+IHRN+L+Y+LDK Q++ L + +LDD
Sbjct: 329 FAQNCDLAQTCESLHIHRNTLRYRLDKIQQETSLDINKLDD 369
>ref|NP_249741.1| hypothetical protein PA1050 [Pseudomonas aeruginosa PAO1]
ref|ZP_00976515.1| COG3835: Sugar diacid utilization regulator [Pseudomonas aeruginosa
2192]
ref|ZP_01364412.1| hypothetical protein PaerPA_01001519 [Pseudomonas aeruginosa PACS2]
ref|YP_792220.1| hypothetical protein PA14_50790 [Pseudomonas aeruginosa UCBPP-PA14]
gb|AAG04439.1|AE004537_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gb|ABJ10214.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
gb|EAZ56848.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 370
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Query: 121 FLCRQAISIKVLR-WLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTA 179
F CR L WLE +G+A + G+ + +A C + L
Sbjct: 203 FWCRPVAHADTLEHWLER---ADARGWGVA-RLCAGDPAHDLAELRASACAARD---LLD 255
Query: 180 YLRQQ-SGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFL------SPQSDMADVVHALWS 232
Y R + GR+++T G L SLL RQ L PQ +A + + +
Sbjct: 256 YARSRLPGRRVVTLDGHRLASLLFSQRDSWQVRQLLAPLQRLLDHDPQGSLAATLESWCA 315
Query: 233 EHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
G+ AQ L IHRNSL+Y+L++ A SGL L +L+
Sbjct: 316 HDGHAQACAQALGIHRNSLRYRLERIASISGLDLARLE 353
>ref|YP_395325.1| hypothetical protein LSA0710 [Lactobacillus sakei subsp. sakei 23K]
emb|CAI55014.1| Hypothetical protein [Lactobacillus sakei subsp. sakei 23K]
Length = 345
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
+ +GN+V+TA +L+IHRN+L Y+L + + GL K+ D+L + L Y
Sbjct: 291 FRNNGNIVETAHQLHIHRNTLNYRLGQIKDKLGLDPKRYDELVILYTAFLNY 342
>ref|NP_623553.1| Regulator of polyketide synthase expression [Thermoanaerobacter
tengcongensis MB4]
gb|AAM25157.1| Regulator of polyketide synthase expression [Thermoanaerobacter
tengcongensis MB4]
Length = 351
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 217 LSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
L ++ ++A + + NL +T++ LYIHRN+L Y+LDK + SGL ++ D+
Sbjct: 279 LLKDEELMQTLNAFFRNNLNLSETSRDLYIHRNTLVYRLDKILKMSGLDARKFDE 333
>ref|ZP_02037848.1| hypothetical protein BACCAP_03467 [Bacteroides capillosus ATCC
29799]
gb|EDM98665.1| hypothetical protein BACCAP_03467 [Bacteroides capillosus ATCC
29799]
Length = 363
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFAHLFLLK 281
++ + + N+ +TA++L++HRN+L Y+L+K + +GL L++ DD + F ++K
Sbjct: 298 INKFFENNLNVSETARKLFVHRNTLVYRLEKIKKLTGLDLREFDDAITFKVALMVK 353
>ref|ZP_02992175.1| putative transcriptional regulator, PucR family [Exiguobacterium
sp. AT1b]
gb|EDU19985.1| putative transcriptional regulator, PucR family [Exiguobacterium
sp. AT1b]
Length = 280
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 26/271 (9%)
Query: 18 GDKDWMSIKEGDQYVHFPKSCLSEKERLLLEVGLGQCEVLQ--PLGSPWQRYLLDHQGNP 75
GD DW ++G + P LSE+E+ LL L +LQ P WQ L D
Sbjct: 23 GDLDWFETQDGTLF-GLPAFELSEREQKLL--ALWATPILQSDPHQRKWQATLQDETFRF 79
Query: 76 PQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTAFLCRQAISIKVLRWL 135
Q + ++ + V +++ + EVIL +T+ L Q + L+
Sbjct: 80 EQPFRLISLSLQEAEEEAFESFVSIVRDFMPHAEVIL--MSTRHIELIEQNPFVD-LQEF 136
Query: 136 EDLLPTLESDFGLALTMFVGNAWY-QVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSG 194
ED+L + SD +A Y + G+L + + QLL Y R + K S
Sbjct: 137 EDVLRAIASD-----CFIEAHAIYSERPQGSLAHVYRQH-QLLMPYARMST--KTYPASQ 188
Query: 195 LMLWSLLSHHTFLALTRQFHQFLSPQSDMADV-----VHALWSEHGNLVQTAQRLYIHRN 249
L+ LL L + H +P M D+ + AL+ N+ TA+ L++HRN
Sbjct: 189 LLYHYLLQQQD---LKERMH-ITAPLMQMLDLSTIELLEALFRHSLNVSHTAKALFMHRN 244
Query: 250 SLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
+L Y+LD+ + +G + D + L ++
Sbjct: 245 TLNYRLDRLFETTGYDARTFYDASLLQLMVM 275
>ref|YP_001038275.1| transcriptional regulator, CdaR [Clostridium thermocellum ATCC
27405]
gb|ABN53082.1| transcriptional regulator, CdaR family [Clostridium thermocellum
ATCC 27405]
Length = 361
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFAHLFLLK 281
++ + + N+ +T+++LY+HRN+L Y+LDK + +GL L+ DD + F L+K
Sbjct: 296 INKFFENNLNVSETSRQLYVHRNTLVYRLDKIQKITGLDLRLFDDAIIFKVAMLVK 351
>ref|ZP_01996881.1| hypothetical protein DORLON_02906 [Dorea longicatena DSM 13814]
gb|EDM61753.1| hypothetical protein DORLON_02906 [Dorea longicatena DSM 13814]
Length = 362
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 296 INKFFENNLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 353
>ref|YP_001560696.1| transcriptional regulator, CdaR [Clostridium phytofermentans ISDg]
gb|ABX43957.1| transcriptional regulator, CdaR [Clostridium phytofermentans ISDg]
Length = 362
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 185 SGRKLLTFSGLMLWSLLSH------HTFLALTRQFHQFLSPQS---DMADVVHALWSEHG 235
SGR ++ +S L + L+ F+ R+ + SP + ++ +
Sbjct: 248 SGRNVVAYSNLGIGRLIYQLPMPLCKMFI---REIFEGKSPDDFDEETLTTINKFFENSL 304
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
N+ +T+++LYIHRN+L Y+LDK + + L L+ +D + F L ++KY
Sbjct: 305 NVSETSRQLYIHRNTLVYRLDKLQKSTNLDLRVFEDAITFKIALMVVKY 353
>ref|ZP_02433765.1| hypothetical protein CLOSCI_04050 [Clostridium scindens ATCC 35704]
gb|EDS04911.1| hypothetical protein CLOSCI_04050 [Clostridium scindens ATCC 35704]
Length = 362
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 296 INKFFENNLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 353
>ref|ZP_02235623.1| hypothetical protein DORFOR_02509 [Dorea formicigenerans ATCC
27755]
gb|EDR45908.1| hypothetical protein DORFOR_02509 [Dorea formicigenerans ATCC
27755]
Length = 367
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 301 INKFFENNLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 358
>ref|ZP_02026208.1| hypothetical protein EUBVEN_01464 [Eubacterium ventriosum ATCC
27560]
gb|EDM51137.1| hypothetical protein EUBVEN_01464 [Eubacterium ventriosum ATCC
27560]
Length = 362
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 296 INKFFENSLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 353
>ref|YP_001697532.1| hypothetical protein Bsph_1808 [Lysinibacillus sphaericus C3-41]
gb|ACA39402.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 356
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 164 GTLRECFEEECQLLTAYLRQQSGRK-----LLTFSGLMLWSLL-SHHTFLALTRQFHQFL 217
+L+EC+ E L ++Q + + ++ FS L L +L S ++ L + + + L
Sbjct: 219 NSLKECYREARIALNTIVKQSANVQDSRLIIVEFSNLYLERVLYSENSDLEMRYIYMETL 278
Query: 218 SP--------QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQL 269
P +S+ D + + N+ TAQ+LY+H+N+++Y++ ++ + L
Sbjct: 279 DPIIQYDKKNKSNFLDTLEHFIKSNMNIEVTAQQLYLHKNTIRYRMKLISELMNIDFNNL 338
Query: 270 D-----DLAFAHLFLLK 281
+ +AF +L L+K
Sbjct: 339 NTIMLLKIAFNYLHLMK 355
>ref|ZP_02205628.1| hypothetical protein COPEUT_00390 [Coprococcus eutactus ATCC 27759]
gb|EDP26869.1| hypothetical protein COPEUT_00390 [Coprococcus eutactus ATCC 27759]
Length = 362
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 296 INKFFENSLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 353
>ref|ZP_02432440.1| hypothetical protein CLOSCI_02686 [Clostridium scindens ATCC 35704]
gb|EDS06326.1| hypothetical protein CLOSCI_02686 [Clostridium scindens ATCC 35704]
Length = 355
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 33/45 (73%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
V+ + + N+ +TA++LY+HRN+L Y+L+K +++GL ++ +D
Sbjct: 292 VYTFFDNNLNISETARQLYVHRNTLVYRLEKIQKKTGLDVRVFED 336
>ref|YP_001181114.1| transcriptional regulator, CdaR [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|ABP67923.1| transcriptional regulator, CdaR family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 363
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
N+ +TA++LYIHRN+L Y+LDK + GL L++ +D
Sbjct: 305 NVSETARQLYIHRNTLVYRLDKIERMIGLDLRKFED 340
>ref|ZP_01966516.1| hypothetical protein RUMTOR_00054 [Ruminococcus torques ATCC 27756]
gb|EDK25162.1| hypothetical protein RUMTOR_00054 [Ruminococcus torques ATCC 27756]
Length = 363
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 297 INKFFENSLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 354
>ref|ZP_02039393.1| hypothetical protein RUMGNA_00146 [Ruminococcus gnavus ATCC 29149]
gb|EDN79378.1| hypothetical protein RUMGNA_00146 [Ruminococcus gnavus ATCC 29149]
Length = 363
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
++ + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 297 INKFFENSLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 354
>ref|ZP_02169927.1| putative transcriptional regulator, PucR family [Bacillus
selenitireducens MLS10]
gb|EDP83445.1| putative transcriptional regulator, PucR family [Bacillus
selenitireducens MLS10]
Length = 307
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 135 LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSG 194
LE ++ TL SDF L + ++ G ++ A + F E + R S + +
Sbjct: 149 LESVVDTLASDFYLNIGIYSGVLVHK--ADDILPTFVREQYIYDEIKRLFSRKNVFVEQE 206
Query: 195 LMLWSLLSHHTFLALTRQFHQFLSPQSD--MADVVHALWSEHGNLVQTAQRLYIHRNSLQ 252
L+ L + ++ D + + + + N A+ L++HRN++Q
Sbjct: 207 AHLYYALLKLPYEVKELILEPLIAIDDDHELKETISVYLKHNMNTSSAAKELFMHRNTMQ 266
Query: 253 YKLDKFAQQSGLHLKQLDDLAFAHLFL 279
Y+LDKF +++ + +KQ + A +L L
Sbjct: 267 YRLDKFIEKTSIDMKQFPNAAACYLML 293
>ref|YP_001311414.1| transcriptional regulator, PucR family [Clostridium beijerinckii
NCIMB 8052]
gb|ABR36458.1| transcriptional regulator, PucR family [Clostridium beijerinckii
NCIMB 8052]
Length = 405
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 147 GLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLL-SHHT 205
G+++++ +GN++ + +++ E + + Q + + + ++SLL S
Sbjct: 260 GMSVSVGIGNSYKDLK--MMKQSLNEAELAIDSAKCQGLDDTITRYKDIGIYSLLFSVEN 317
Query: 206 FLALTRQFHQFLSPQS-------DMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 258
L F + L P S ++ +++ +E+ N+ TA++L++HRN+L+YK+ K
Sbjct: 318 RSILQNYFSEVLGPISGADNKDNNLIEILEMYLNENCNITVTAEKLFLHRNTLKYKIKKI 377
Query: 259 AQQSGLHLKQLDD 271
+ L+ +D
Sbjct: 378 EELLNCDLRNFND 390
>ref|ZP_01575893.1| transcriptional regulator, CdaR [Clostridium cellulolyticum H10]
gb|EAV70000.1| transcriptional regulator, CdaR [Clostridium cellulolyticum H10]
Length = 359
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
+ + + N+ +TA++LYIHRN+L Y+L+K + +GL L DD + +L
Sbjct: 296 IQKFFENNLNVSETARQLYIHRNTLVYRLEKIKRLTGLELTSFDDAVIFKVAIL 349
>gb|AAL00942.1|AF401662_1 putative leucine-rich transcriptional regulator [Lactobacillus
sakei]
Length = 63
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 234 HGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY 282
+GN+V+TA +L+IHRN+L Y+L + + GL K+ D+L + L Y
Sbjct: 12 NGNIVETAHQLHIHRNTLNYRLGQIKDKLGLDPKRYDELVILYTAFLNY 60
>ref|YP_001308002.1| putative transcriptional regulator, PucR family [Clostridium
beijerinckii NCIMB 8052]
gb|ABR33046.1| putative transcriptional regulator, PucR family [Clostridium
beijerinckii NCIMB 8052]
Length = 314
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 214 HQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLA 273
F DM + + NL + ++ LY+HRN+L Y+LDK + +G +++ +D A
Sbjct: 240 ESFSKLDEDMLKTIEVFFKSDLNLSEASKGLYVHRNTLIYRLDKIQKYTGYDIRKFNDAA 299
>ref|YP_001502558.1| transcriptional regulator, CdaR [Shewanella pealeana ATCC 700345]
gb|ABV88023.1| transcriptional regulator, CdaR [Shewanella pealeana ATCC 700345]
Length = 383
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 235 GNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
G+L Q A L+IHRN+L+Y+LDK Q +G ++ QLD L
Sbjct: 333 GDLQQCANVLFIHRNTLRYRLDKIQQITGANINQLDGL 370
>ref|YP_077298.1| Putative sugar diacid recognition protein [Bacillus licheniformis
ATCC 14580]
ref|YP_089699.1| YsfB [Bacillus licheniformis ATCC 14580]
gb|AAU21660.1| Putative sugar diacid recognition protein [Bacillus licheniformis
ATCC 14580]
gb|AAU39006.1| YsfB [Bacillus licheniformis DSM 13]
Length = 372
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 217 LSPQSDMADVVHALW---SEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
LS ++ H L E+G + +T+ RL+IHRN+L Y+L K +G + K+ DDL
Sbjct: 295 LSQADQKGELTHTLLCYIEENGEIGETSSRLFIHRNTLNYRLRKIELATGCNPKRFDDL 353
>ref|ZP_02420634.1| hypothetical protein ANACAC_03251 [Anaerostipes caccae DSM 14662]
gb|EDR96628.1| hypothetical protein ANACAC_03251 [Anaerostipes caccae DSM 14662]
Length = 237
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAF 274
++ + + N+ +T+++LYIHRN+L Y+LDK + + L L+ +D +AF
Sbjct: 172 IYKFFENNLNVSETSRQLYIHRNTLVYRLDKIQKSTNLDLRNFEDAIAF 220
>ref|YP_001675001.1| transcriptional regulator, CdaR [Shewanella halifaxensis HAW-EB4]
gb|ABZ77342.1| transcriptional regulator, CdaR [Shewanella halifaxensis HAW-EB4]
Length = 386
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 235 GNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
G+L Q A L+IHRN+L+Y+LD+ Q +G +L QLD L
Sbjct: 333 GDLQQCANVLFIHRNTLRYRLDRIQQITGANLNQLDGL 370
>ref|YP_205538.1| DNA-binding transcriptional activator [Vibrio fischeri ES114]
gb|AAW86650.1| DNA-binding transcriptional activator [Vibrio fischeri ES114]
Length = 381
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 219 PQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
P+ + + A ++ + + QT + L+IHRN+L+Y+LDK +++ L + +++D + +L
Sbjct: 316 PKGILLKTLKAFFNHNCDSAQTCKSLHIHRNTLRYRLDKINKETSLDINKINDSTYLYL 374
>ref|ZP_02075657.1| hypothetical protein CLOL250_02433 [Clostridium sp. L2-50]
gb|EDO56745.1| hypothetical protein CLOL250_02433 [Clostridium sp. L2-50]
Length = 380
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
+ + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D + F L ++KY
Sbjct: 314 IDKFFENSLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFEDAITFKIALMVVKY 371
>ref|ZP_02083207.1| hypothetical protein CLOBOL_00723 [Clostridium bolteae ATCC
BAA-613]
gb|EDP19286.1| hypothetical protein CLOBOL_00723 [Clostridium bolteae ATCC
BAA-613]
Length = 362
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++ + N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D
Sbjct: 296 INKFFENSLNVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRIFED 340
>ref|YP_300269.1| putative transcriptional regulator [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
dbj|BAE17324.1| putative transcriptional regulator [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 405
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+ + +L+ N+ QTA+ LYIHRN+L Y+L+K Q+GL+ K+ D
Sbjct: 349 ETLKSLFENDLNIAQTAKYLYIHRNTLLYRLEKCKLQTGLNPKKYSD 395
>ref|NP_233290.1| hypothetical protein VCA0905 [Vibrio cholerae O1 biovar eltor str.
N16961]
ref|ZP_01480713.1| hypothetical protein VchoM_02000113 [Vibrio cholerae MO10]
ref|ZP_01676192.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
ref|ZP_01679756.1| conserved hypothetical protein [Vibrio cholerae V52]
ref|YP_001215173.1| hypothetical protein VC0395_0332 [Vibrio cholerae O395]
ref|ZP_01953487.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
ref|ZP_01971884.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
ref|ZP_01976153.1| conserved hypothetical protein [Vibrio cholerae B33]
gb|AAF96802.1| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor
str. N16961]
gb|EAX59411.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gb|EAX63464.1| conserved hypothetical protein [Vibrio cholerae V52]
gb|EAY37367.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gb|EAZ48578.1| conserved hypothetical protein [Vibrio cholerae MO10]
gb|EAZ72845.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gb|EAZ76223.1| conserved hypothetical protein [Vibrio cholerae B33]
gb|ABQ18686.1| conserved hypothetical protein [Vibrio cholerae O395]
Length = 379
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 211 RQFHQFLSPQSDMADVVH---ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLK 267
R+ Q L Q +V L++ +GNL AQ+L+IHRN+L+Y+L+K + +G+
Sbjct: 302 RRVMQELQTQDKSGQLVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETN 361
Query: 268 QLDDLAFAHLFL 279
L L A L++
Sbjct: 362 SL--LGLAELYI 371
>ref|YP_131296.1| putative sugar diacid utilization regulator [Photobacterium
profundum SS9]
emb|CAG21494.1| putative sugar diacid utilization regulator [Photobacterium
profundum SS9]
Length = 385
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 219 PQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLF 278
P+ + + A + ++ +L QT + L+IHRN+L+Y+L+K Q++ L + D +L
Sbjct: 321 PRGVLIKTLKAFFVQNCDLAQTCEMLHIHRNTLRYRLEKIEQETSLSFNNISDKTRLYLS 380
Query: 279 LL 280
LL
Sbjct: 381 LL 382
>ref|ZP_01977361.1| carbohydrate diacid regulator [Vibrio cholerae MZO-2]
gb|EDM55679.1| carbohydrate diacid regulator [Vibrio cholerae MZO-2]
Length = 379
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+ + L++ +GNL AQ+L+IHRN+L+Y+L+K + +G+ L L A L++
Sbjct: 317 LVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSL--LGLAELYI 371
>ref|YP_439834.1| DNA-binding protein [Burkholderia thailandensis E264]
ref|ZP_02371171.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
ref|ZP_02385067.1| DNA-binding protein [Burkholderia thailandensis Bt4]
gb|ABC35513.1| DNA-binding protein [Burkholderia thailandensis E264]
Length = 410
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 149 ALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLA 208
ALT+FVG + AA E Q L ++G+ L +S L + LL+
Sbjct: 258 ALTLFVGISSTVGAARHYCRGLAEARQALGVAEGMRAGQGLCDYSELGVLKLLAAIPDPT 317
Query: 209 LTRQF-HQFLSPQSD--------MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFA 259
L F + L D + + + AL E+GN ++ A++L IHRN+L ++L +
Sbjct: 318 LIDGFVKETLGNLLDSNRKHPTMLIETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIE 377
Query: 260 QQSG 263
QSG
Sbjct: 378 TQSG 381
>ref|ZP_01220012.1| putative sugar diacid utilization regulator [Photobacterium
profundum 3TCK]
gb|EAS43362.1| putative sugar diacid utilization regulator [Photobacterium
profundum 3TCK]
Length = 385
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 219 PQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLF 278
P+ + + A + ++ +L QT + L+IHRN+L+Y+L+K Q++ L + D +L
Sbjct: 321 PRGVLIKTLKAFFVQNCDLAQTCEMLHIHRNTLRYRLEKIEQETSLSFNNISDKTRLYLS 380
Query: 279 LL 280
LL
Sbjct: 381 LL 382
>ref|ZP_02423222.1| hypothetical protein EUBSIR_02080 [Eubacterium siraeum DSM 15702]
gb|EDS00143.1| hypothetical protein EUBSIR_02080 [Eubacterium siraeum DSM 15702]
Length = 361
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
+ + + N+ +T+++L++HRN+L Y+LDK + +GL L++ D
Sbjct: 296 IQRFFENNLNVSETSRKLFVHRNTLVYRLDKIKKLTGLDLREFD 339
>ref|ZP_02437677.1| hypothetical protein CLOSS21_00108 [Clostridium sp. SS2/1]
gb|EDS23249.1| hypothetical protein CLOSS21_00108 [Clostridium sp. SS2/1]
Length = 361
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFA-HLFLLKY 282
+ + + N+ +T+++L+IHRN+L Y+LDK + + L L+ +D +AF L ++KY
Sbjct: 296 IDKFFENNLNVSETSRQLFIHRNTLVYRLDKIQKNTNLDLRNFEDAIAFKIALMVVKY 353
>ref|ZP_01957947.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gb|EAY39852.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 379
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+ + L++ +GNL AQ+L+IHRN+L+Y+L+K + +G+ L L A L++
Sbjct: 317 LVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSL--LGLAELYI 371
>ref|YP_001696999.1| Hypothetical yxkF protein [Lysinibacillus sphaericus C3-41]
gb|ACA38869.1| Hypothetical yxkF protein [Lysinibacillus sphaericus C3-41]
Length = 313
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 10/221 (4%)
Query: 64 WQRYLLDHQGNPPQLY----ETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQT 119
W ++ + P +L Q ++N L + L E L + + ++
Sbjct: 83 WYEFIYSNGDMPSKLTFKKARVIQITFINENPPL-EALKEALYNFFQEDTIFIQVATNHF 141
Query: 120 AFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTA 179
+ + SI L L+ T+E DF + + ++VG + V F+ E Q
Sbjct: 142 LLIEPENCSINEREDLLALIRTIEVDFYVRIHLYVGE--FYVIDQNFPVKFQREAQWFKE 199
Query: 180 YLRQQSGRKLLTFSGL---MLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHALWSEHGN 236
L ++ +F + +L L + Q L ++ + + N
Sbjct: 200 CLHLRTAEPYYSFQTIFPILLTEQLPTSILKFIEEQIILPLKSDKELLETIKTFCECGFN 259
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHL 277
+ T+++L+IHRN+L Y+L KF + + + +K LD + +
Sbjct: 260 ISSTSKKLHIHRNTLTYRLLKFQEITNITIKNLDGVILVYF 300
>ref|ZP_01481823.1| hypothetical protein VchoR_02002271 [Vibrio cholerae RC385]
gb|EDN13272.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 379
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+ + L++ +GNL AQ+L+IHRN+L+Y+L+K + +G+ L L A L++
Sbjct: 317 LVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSL--LGLAELYI 371
>ref|ZP_01948176.1| conserved hypothetical protein [Vibrio cholerae 1587]
gb|EAY35422.1| conserved hypothetical protein [Vibrio cholerae 1587]
gb|EDN17096.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
Length = 379
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+ + L++ +GNL AQ+L+IHRN+L+Y+L+K + +G+ L L A L++
Sbjct: 317 LVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSL--LGLAELYI 371
>ref|ZP_02918830.1| hypothetical protein BIFDEN_02148 [Bifidobacterium dentium ATCC
27678]
gb|EDT46298.1| hypothetical protein BIFDEN_02148 [Bifidobacterium dentium ATCC
27678]
Length = 387
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 169 CFEEECQLLTAYLRQQSGRKLLT----FSGLMLWSLLSHHTFLALTRQFH-QFLSP---- 219
C + + + L+ QS +KL F L + +L ++R++H Q L P
Sbjct: 258 CVSKSHRQAASILKLQSRKKLEDRINFFDDLGAYRVLLGIEDPEISREYHTQILGPLIEY 317
Query: 220 ----QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
SD+ DV+ + + ++ +TA L++HRN++ YK+ K A+ + L +LD
Sbjct: 318 DKESDSDLLDVLRCYLNHNDSVKETADELFVHRNTVNYKISKAAEILCMDLSKLD 372
>ref|ZP_01965334.1| hypothetical protein RUMOBE_03073 [Ruminococcus obeum ATCC 29174]
gb|EDM86271.1| hypothetical protein RUMOBE_03073 [Ruminococcus obeum ATCC 29174]
Length = 362
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
N+ +T+++LYIHRN+L Y+LDK + +GL L+ +D
Sbjct: 305 NVSETSRQLYIHRNTLVYRLDKLQKSTGLDLRVFED 340
>ref|ZP_02428720.1| hypothetical protein CLORAM_02130 [Clostridium ramosum DSM 1402]
gb|EDS17347.1| hypothetical protein CLORAM_02130 [Clostridium ramosum DSM 1402]
Length = 359
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+++H + E +L+ TA RL+IH+N+LQYKLD+ + G + ++ D +L L
Sbjct: 302 NLLHIYFEEDMSLLNTANRLFIHKNTLQYKLDRIHKLCGYNPRKFRDANILYLAL 356
>ref|ZP_01966538.1| hypothetical protein RUMTOR_00076 [Ruminococcus torques ATCC 27756]
gb|EDK25184.1| hypothetical protein RUMTOR_00076 [Ruminococcus torques ATCC 27756]
Length = 240
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 222 DMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++ V+ + + N+ +TA++L++HRN+L Y+L++ +Q+GL L+ DD
Sbjct: 173 ELMATVNRFFLNNLNIAETARQLHMHRNTLIYRLEQIEKQTGLDLRLFDD 222
>ref|ZP_02848609.1| transcriptional regulator, PucR family [Paenibacillus sp. JDR-2]
gb|EDS51658.1| transcriptional regulator, PucR family [Paenibacillus sp. JDR-2]
Length = 528
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
++M + + G L +TA++LYIHRN+ Y+++K ++ G+ K+++DL
Sbjct: 459 NEMLRTLETYLEQDGQLNETAKKLYIHRNTATYRIEKLSEILGVDFKKMNDL 510
>ref|ZP_01514326.1| Sugar diacid utilization regulator-like [Chloroflexus aggregans DSM
9485]
gb|EAV12086.1| Sugar diacid utilization regulator-like [Chloroflexus aggregans DSM
9485]
Length = 518
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+D+ + A ++ GNL T++ LYIHRN+L Y+L++ + SG+ L ++
Sbjct: 448 ADLIKTLEAYFNHLGNLRATSEALYIHRNTLLYRLERIKEISGMDLDNAEE 498
>ref|ZP_01980730.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gb|EDL74607.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 379
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
+ + L++ +GNL AQ+L+IHRN+L+Y+L+K + +G+ L L A L++
Sbjct: 317 LVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEFTGIDTNSL--LGLAELYI 371
>ref|ZP_02080168.1| hypothetical protein CLOLEP_01620 [Clostridium leptum DSM 753]
gb|EDO61225.1| hypothetical protein CLOLEP_01620 [Clostridium leptum DSM 753]
Length = 361
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFAHLFLLK 281
+ + + N+ +T+++L++HRN+L Y+L+K + +GL L++ +D + F ++K
Sbjct: 296 IQRFFENNLNVSETSRKLFVHRNTLVYRLEKIKKLTGLDLREFEDAIVFKVALMVK 351
>ref|YP_001750132.1| putative transcriptional regulator, PucR family [Pseudomonas putida
W619]
gb|ACA73763.1| putative transcriptional regulator, PucR family [Pseudomonas putida
W619]
Length = 405
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAF 274
+ AL E+GN ++ AQRL +HRN++ ++ + Q+SG K LDD F
Sbjct: 341 LEALLKENGNGIKAAQRLGLHRNTINQRIQRIEQRSG---KSLDDPLF 385
>ref|YP_260484.1| Putative sugar diacid recognition family [Pseudomonas fluorescens
Pf-5]
gb|AAY92648.1| Putative sugar diacid recognition family [Pseudomonas fluorescens
Pf-5]
Length = 373
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 27/221 (12%)
Query: 73 GNPPQLYETSQFIYLNHQQALPDDLVELLQQMIAGLEVILPISATQTAFLCRQAISIKVL 132
G+ P+L + +Q + L Q A L EL Q+ +G V + + L R S V
Sbjct: 142 GDSPRLVDEAQQMGLKPQLARTPYLFELAQEPASGQGV----DSLSSWLLSRYPDSWCVS 197
Query: 133 RWLEDLL----PTLESDFGLALTMFVGNAWY--QVAAGT-------LRECFEEECQLLTA 179
LL +L D L G W +VA G LR C+ LL A
Sbjct: 198 SSKSSLLWCRPASLSLDNPRLLEKLDGQGWNILRVAVGGQAEGLAGLRRCYRRVGDLL-A 256
Query: 180 YLRQQ-SGRKLLTFSG----LMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL--WS 232
Y R +LLT + +MLW + L + L+ S+ ++ L W
Sbjct: 257 YGRDILPDARLLTLNRYRLPVMLWRHRNDDALDELLTPLRKVLAKDSN-GQLLATLRSWC 315
Query: 233 EHGNLVQT-AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
+H Q A L IHRNSL+Y++++ A+ SG+ +LD +
Sbjct: 316 DHDGQSQACADALGIHRNSLRYRMERIAELSGVDPLRLDGM 356
>ref|ZP_02159188.1| hypothetical Sugar diacid utilization regulator [Shewanella
benthica KT99]
gb|EDP99302.1| hypothetical Sugar diacid utilization regulator [Shewanella
benthica KT99]
Length = 388
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 235 GNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
G+L Q A L+IHRN+L+Y+LDK Q + +++++LD L
Sbjct: 333 GDLQQCANALFIHRNTLRYRLDKIQQVTDINIQELDGL 370
>ref|ZP_01965608.1| hypothetical protein RUMOBE_03347 [Ruminococcus obeum ATCC 29174]
gb|EDM86108.1| hypothetical protein RUMOBE_03347 [Ruminococcus obeum ATCC 29174]
Length = 359
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 226 VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++ + + NL +T+++LY+HRN+L Y+ +K ++ GL L+ +D
Sbjct: 294 IIRTFFENNLNLSETSRQLYVHRNTLVYRFEKIQKRFGLDLRTFED 339
>ref|ZP_02235617.1| hypothetical protein DORFOR_02503 [Dorea formicigenerans ATCC
27755]
gb|EDR45902.1| hypothetical protein DORFOR_02503 [Dorea formicigenerans ATCC
27755]
Length = 315
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + + + N+ +TA++L++HRN+L Y+L++ +++GL L+Q +D
Sbjct: 242 KDTLAAIDKFFQNNLNIAETARQLHMHRNTLIYRLEQVEKRTGLDLRQFED 292
>ref|ZP_02441720.1| hypothetical protein ANACOL_01001 [Anaerotruncus colihominis DSM
17241]
gb|EDS12158.1| hypothetical protein ANACOL_01001 [Anaerotruncus colihominis DSM
17241]
Length = 342
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
+ + + N+ +T+++L++HRN+L Y+L+K + +GL L++ D
Sbjct: 277 IQKFFENNLNVSETSRKLFVHRNTLVYRLEKIKKLTGLDLREFD 320
>ref|ZP_02466016.1| putative purine catabolism transcriptional regulator [Burkholderia
thailandensis MSMB43]
Length = 410
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 150 LTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLAL 209
LT+FVG + AA E Q L ++G+ L +S L + LL+ L
Sbjct: 259 LTLFVGISSTVGAARHYCRGLAEARQALGVAEGMRAGQGLCDYSELGVLKLLAAIPDPTL 318
Query: 210 TRQF-HQFLSPQSD--------MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQ 260
F + L D + + + AL E+GN ++ A++L IHRN+L ++L +
Sbjct: 319 IDGFVKETLGNLLDSNRKHPTMLIETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIET 378
Query: 261 QSG 263
QSG
Sbjct: 379 QSG 381
>ref|ZP_02090469.1| hypothetical protein FAEPRAM212_00719 [Faecalibacterium prausnitzii
M21/2]
gb|EDP22475.1| hypothetical protein FAEPRAM212_00719 [Faecalibacterium prausnitzii
M21/2]
Length = 361
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 227 VHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD-LAFAHLFLLK 281
+ + + N+ +T++ L++HRN+L Y+L+K + +GL L++ DD + F ++K
Sbjct: 296 IQRFFENNLNVSETSRGLFVHRNTLVYRLEKIKKLTGLDLREFDDAIVFKVALMVK 351
>ref|YP_001212563.1| sugar diacid utilization regulator [Pelotomaculum thermopropionicum
SI]
dbj|BAF60194.1| sugar diacid utilization regulator [Pelotomaculum thermopropionicum
SI]
Length = 390
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 177 LTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSP---QSDMADVVHALWSE 233
+ Y ++ + S L SLLS R ++L + ++ + + A +
Sbjct: 274 MGKYFKEVRQSNIYHISDFALESLLSRICDEEKERFIERYLGSIKDEKELQETLEAFFQN 333
Query: 234 HGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQL-DDLAFAHLFLLK 281
+ N+ Q A++ ++HRN+ Y+LDK +GL+ + D L A ++K
Sbjct: 334 NLNIAQAAEKAFLHRNTFTYRLDKIQSLTGLNPRSFYDALVLAIALIMK 382
>ref|YP_001345142.1| transcriptional regulator, CdaR [Actinobacillus succinogenes 130Z]
gb|ABR75207.1| transcriptional regulator, CdaR [Actinobacillus succinogenes 130Z]
Length = 383
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 223 MADVVHAL------WSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
+AD H L W E+ + TA+ LYIHRN+L+Y+L+K + +GL+L D
Sbjct: 316 LADNNHVLVKTLFAWFENNMQTIATAKALYIHRNTLEYRLNKISDLTGLNLNSTD 370
>ref|ZP_02210853.1| hypothetical protein CLOBAR_00421 [Clostridium bartlettii DSM
16795]
gb|EDQ97680.1| hypothetical protein CLOBAR_00421 [Clostridium bartlettii DSM
16795]
Length = 389
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 118 QTAFLCRQAISIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLL 177
A + ++V + +++L ++ DF L +F+G L + +EE + +
Sbjct: 214 SVAIVFYNKTDLEVEKIMKELYISMNKDFR-NLKLFIGIGKRVNNLKLLYKGYEE-AKNV 271
Query: 178 TAYLRQQSGRKL-LTFSGLMLWSLLSHHTFLALTRQFH-QFLSP--------QSDMADVV 227
R S K+ + +S + ++ LL + ++FH Q + +D +++
Sbjct: 272 AKINRLISNNKVHIRYSEMAIYRLLLEMENKEIIKEFHDQTIGDLVVYDKVNNTDYVELL 331
Query: 228 HALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
+ + + + +TA+ LY+HRN++ YK+ K + ++L + D + +L L+
Sbjct: 332 ESYFENNCKINETAKSLYLHRNTVNYKISKIEEILDINLDDIGDKSKIYLSLM 384
>ref|YP_087886.1| carbohydrate diacid transcriptional activator CdaR [Mannheimia
succiniciproducens MBEL55E]
gb|AAU37301.1| SrmR protein [Mannheimia succiniciproducens MBEL55E]
Length = 383
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 238 VQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+ TA+ LY+HRN+L+Y+L+K A +GL L D+
Sbjct: 338 IATAKALYVHRNTLEYRLNKIADLTGLDLNSTDN 371
>ref|YP_885838.1| hypothetical protein MSMEG_1456 [Mycobacterium smegmatis str. MC2
155]
gb|ABK75017.1| hypothetical protein MSMEG_1456 [Mycobacterium smegmatis str. MC2
155]
Length = 561
Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 162 AAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQF-HQFLSP- 219
AG +RE + E ++ R+ ++ L +++L+ +RQ L P
Sbjct: 422 GAGEVRESYRE-ARVALGIARRLHRTGATSYQQLRGFTVLAQVAETEDSRQLVRDVLGPL 480
Query: 220 --QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLK 267
D+ + + A SE GN+ TA+ L +HRN++ KLD+ ++ G+ ++
Sbjct: 481 RSSPDLLETLEAYLSEGGNINATARTLNVHRNTMLAKLDRISRMLGMDVR 530
>ref|YP_430960.1| transcriptional regulator, CdaR [Moorella thermoacetica ATCC 39073]
gb|ABC20417.1| transcriptional regulator, CdaR family [Moorella thermoacetica ATCC
39073]
Length = 553
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 220 QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
++ + + L++ NL +TA L+IH N+L+Y++++ Q +GL LK DD
Sbjct: 486 KAGLITTLEMLFANDMNLQKTADALFIHYNTLRYRINRIQQITGLDLKSPDD 537
>ref|YP_001761496.1| transcriptional regulator, CdaR [Shewanella woodyi ATCC 51908]
gb|ACA87401.1| transcriptional regulator, CdaR [Shewanella woodyi ATCC 51908]
Length = 382
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
A + G+ + A L+IHRN+L+Y+LDK Q +G+ ++QLD L
Sbjct: 327 AYLTHFGDQQKCANALFIHRNTLRYRLDKIQQITGVDIQQLDGL 370
>ref|ZP_01290241.1| Response regulator receiver [delta proteobacterium MLMS-1]
gb|EAT03356.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 195
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 148 LALTMFVGNAWYQVAAGTLRECF-------EEECQLLTAYLRQQSGRKLLTFSGLMLWSL 200
LA+ + G A +R+ + ++L A+ + Q G++ SG
Sbjct: 78 LAMVVLTGYGSIATATEAIRQGAVAYLPKPADADEILQAF-QHQPGQEAAAISGG----- 131
Query: 201 LSHHTFLALTRQFHQFLSPQSDMAD---VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDK 257
H A T H F +P A+ + L HGN+ Q AQRL +HR +LQ KL K
Sbjct: 132 -DHPAAEAATGADHDFPAPSLARAEWEHINRVLTDCHGNISQAAQRLGLHRRTLQRKLQK 190
Query: 258 F 258
F
Sbjct: 191 F 191
>ref|NP_693875.1| hypothetical protein OB2953 [Oceanobacillus iheyensis HTE831]
dbj|BAC14909.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 570
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 220 QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
Q D+ A GN+ QTA+ L++HR SL Y+L K +GL L D HLFL
Sbjct: 497 QMDLIGTFTAFHQYRGNVSQTARSLHLHRQSLLYRLRKIESLTGLSLNNSD-----HLFL 551
Query: 280 LK 281
L+
Sbjct: 552 LE 553
>ref|YP_890418.1| DNA-binding protein, putative [Mycobacterium smegmatis str. MC2
155]
gb|ABK75961.1| DNA-binding protein, putative [Mycobacterium smegmatis str. MC2
155]
Length = 538
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQ 268
D V A+ GNL A+ L IH NSL+Y+LD+ +GL L+
Sbjct: 461 DTVAAVLDHPGNLSGAARELGIHANSLRYRLDRITAVAGLDLQS 504
>ref|YP_001074218.1| carbohydrate diacid regulator [Burkholderia pseudomallei 1106a]
gb|ABN94775.1| carbohydrate diacid regulator [Burkholderia pseudomallei 1106a]
Length = 488
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 407 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 453
>ref|ZP_02042240.1| hypothetical protein RUMGNA_03039 [Ruminococcus gnavus ATCC 29149]
gb|EDN76580.1| hypothetical protein RUMGNA_03039 [Ruminococcus gnavus ATCC 29149]
Length = 307
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 33/46 (71%)
Query: 226 VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
V+ + N+ +T+++L++HRN+L Y+L++ +++GL L+Q +D
Sbjct: 239 TVNKFLQNNLNIAETSRQLHMHRNTLIYRLEQIEKRTGLDLRQFED 284
>ref|YP_348640.1| Transcriptional Regulator, CdaR [Pseudomonas fluorescens PfO-1]
gb|ABA74650.1| transcriptional regulator, CdaR family [Pseudomonas fluorescens
PfO-1]
Length = 374
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 166 LRECFEEECQLLTAYLRQQSGR-KLLTFSG----LMLWSLLSHHTFLALTRQFHQFLSPQ 220
LR C+ LL AY R+ R +LLT + +MLW + L + + ++
Sbjct: 244 LRRCYRRVGDLL-AYGREVLPRSRLLTLNRYRLPVMLWRHRNDDALDELLKPLRKVIAKD 302
Query: 221 SDMADVVHAL--WSEHGNLVQT-AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
S+ ++ L W +H Q A L IHRNSL+Y++++ A+ SG+ +LD +
Sbjct: 303 SN-GQLLATLRSWCDHDGQSQACADALGIHRNSLRYRMERIAELSGVDPLKLDGM 356
>ref|YP_336797.1| putative transcriptional regulator [Burkholderia pseudomallei
1710b]
gb|ABA53027.1| putative transcriptional regulator [Burkholderia pseudomallei
1710b]
gb|EDO86556.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
406e]
Length = 488
Score = 41.2 bits (95), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 407 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 453
>gb|EDU10452.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
1655]
Length = 487
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 407 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 453
>ref|ZP_01767468.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
305]
gb|EBA47864.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
305]
Length = 492
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 411 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 457
>ref|YP_001061270.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
668]
gb|ABN85329.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
668]
Length = 483
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 403 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 449
>ref|YP_001311541.1| transcriptional regulator, CdaR [Clostridium beijerinckii NCIMB
8052]
gb|ABR36585.1| transcriptional regulator, CdaR [Clostridium beijerinckii NCIMB
8052]
Length = 342
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 191 TFSGLMLWSLLSHHTFLALTRQFHQFLSPQS--DMADVVHALWSEHGNLVQTAQRLYIHR 248
++ L + LSH L L + ++ + A E+G++ A RL IHR
Sbjct: 249 SYDELRFFIKLSHDNKLPLISMMSNLDKAGNKLELIQTIQAYIEENGDIGNVANRLNIHR 308
Query: 249 NSLQYKLDKFAQQSGLHLKQL 269
N+L Y+L+K + +G + K L
Sbjct: 309 NTLNYRLEKIKKLTGKNPKNL 329
>ref|ZP_02465419.1| carbohydrate diacid regulator [Burkholderia thailandensis MSMB43]
Length = 402
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYANDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|ZP_00828898.1| COG3835: Sugar diacid utilization regulator [Yersinia frederiksenii
ATCC 33641]
Length = 385
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA+ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TAKALFIHRNTLEYRLNRISELTGLDLANFDD 371
>ref|ZP_02358385.1| DNA-binding protein [Burkholderia oklahomensis EO147]
Length = 410
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSG 263
+ + + AL E+GN ++ A++L IHRN+L ++L + QSG
Sbjct: 341 LIETLEALLQENGNAIKAAEQLAIHRNTLNHRLRRIETQSG 381
>ref|ZP_00824547.1| COG3835: Sugar diacid utilization regulator [Yersinia mollaretii
ATCC 43969]
Length = 385
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA+ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TAKALFIHRNTLEYRLNRISELTGLDLANFDD 371
>ref|ZP_00821822.1| COG3835: Sugar diacid utilization regulator [Yersinia bercovieri
ATCC 43970]
Length = 367
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H TA+ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 310 ACWFRHNVQPTATAKALFIHRNTLEYRLNRISELTGLDLANFDD 353
>ref|YP_105362.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
ref|ZP_00442418.1| COG2508: Regulator of polyketide synthase expression [Burkholderia
mallei GB8 horse 4]
ref|ZP_00929741.1| COG2508: Regulator of polyketide synthase expression [Burkholderia
mallei FMH]
ref|ZP_00936504.1| COG2508: Regulator of polyketide synthase expression [Burkholderia
mallei JHU]
ref|ZP_01341834.1| hypothetical protein Bmal2_03000272 [Burkholderia mallei
2002721280]
ref|ZP_01346650.1| hypothetical protein Bmal10_03000717 [Burkholderia mallei 10399]
ref|YP_001024679.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
ref|YP_001079014.1| putative purine catabolism transcriptional regulator [Burkholderia
mallei NCTC 10247]
gb|AAU46835.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
gb|ABN00556.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
gb|ABO03296.1| putative purine catabolism transcriptional regulator [Burkholderia
mallei NCTC 10247]
gb|EDK52021.1| putative purine catabolism transcriptional regulator [Burkholderia
mallei FMH]
gb|EDK57325.1| putative purine catabolism transcriptional regulator [Burkholderia
mallei JHU]
gb|EDK82845.1| putative purine catabolism transcriptional regulator [Burkholderia
mallei 2002721280]
gb|EDP85655.1| putative purine catabolism transcriptional regulator [Burkholderia
mallei ATCC 10399]
Length = 410
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
+ + + AL E+GN ++ A++L IHRN+L ++L + QSG L
Sbjct: 341 LIETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIETQSGQSL 384
>ref|ZP_02365454.1| DNA-binding protein [Burkholderia oklahomensis C6786]
Length = 410
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSG 263
+ + + AL E+GN ++ A++L IHRN+L ++L + QSG
Sbjct: 341 LIETLEALLQENGNAIKAAEQLAIHRNTLNHRLRRIETQSG 381
>ref|ZP_02450854.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 91]
Length = 241
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
+ + AL E+GN ++ A++L IHRN+L ++L + QSG L
Sbjct: 174 ETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIETQSGQSL 215
>ref|YP_001062118.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 668]
ref|ZP_02493188.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei NCTC 13177]
gb|ABN87986.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 668]
gb|EDU10757.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 1655]
Length = 410
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
+ + + AL E+GN ++ A++L IHRN+L ++L + QSG L
Sbjct: 341 LIETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIETQSGQSL 384
>ref|YP_110771.1| DNA-binding protein [Burkholderia pseudomallei K96243]
ref|YP_337485.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
ref|ZP_01324653.1| hypothetical protein BpseP_03001512 [Burkholderia pseudomallei
Pasteur]
ref|ZP_01330878.1| hypothetical protein BpseS_03001039 [Burkholderia pseudomallei S13]
ref|ZP_01337131.1| hypothetical protein Bpse4_03000334 [Burkholderia pseudomallei
406e]
ref|YP_001075069.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 1106a]
ref|ZP_01766033.1| DNA-binding protein [Burkholderia pseudomallei 305]
ref|ZP_02100026.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 1106b]
ref|ZP_02108383.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 1710a]
ref|ZP_02414764.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 14]
ref|ZP_02459020.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 9]
ref|ZP_02474531.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei B7210]
ref|ZP_02485023.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 7894]
ref|ZP_02501377.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 112]
ref|ZP_02509284.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei BCC215]
emb|CAH38220.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
gb|ABA53194.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
gb|ABN95616.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 1106a]
gb|EBA49820.1| DNA-binding protein [Burkholderia pseudomallei 305]
gb|EDO87418.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei 406e]
gb|EDO93150.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei Pasteur 52237]
gb|EDS82419.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei S13]
Length = 410
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
+ + + AL E+GN ++ A++L IHRN+L ++L + QSG L
Sbjct: 341 LIETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIETQSGQSL 384
>ref|ZP_02369557.1| carbohydrate diacid regulator [Burkholderia thailandensis TXDOH]
Length = 403
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYANDGHPGATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|ZP_00832595.1| COG3835: Sugar diacid utilization regulator [Yersinia intermedia
ATCC 29909]
Length = 385
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA+ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TAKALFIHRNTLEYRLNRISELTGLDLANFDD 371
>ref|YP_438405.1| carbohydrate diacid regulator [Burkholderia thailandensis E264]
gb|ABC35448.1| carbohydrate diacid regulator [Burkholderia thailandensis E264]
Length = 402
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 324 DTLKAWYANDGHPGATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 370
>ref|ZP_02383491.1| carbohydrate diacid regulator [Burkholderia thailandensis Bt4]
Length = 403
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYANDGHPGATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|NP_737877.1| hypothetical protein CE1267 [Corynebacterium efficiens YS-314]
dbj|BAC18077.1| hypothetical protein [Corynebacterium efficiens YS-314]
Length = 401
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 214 HQFLSPQSDMAD-------VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
+FL P D+ D V A G++ +TA+ +IH N+++Y++ +F + +G
Sbjct: 313 RRFLEPIEDLGDFAEDLLGTVRAYVHCGGSVARTAESQHIHVNTVRYRISRFEELTGFDR 372
Query: 267 KQLDDL 272
+DDL
Sbjct: 373 DNIDDL 378
>ref|ZP_01328401.1| hypothetical protein BpseS_03003549 [Burkholderia pseudomallei S13]
ref|ZP_02413817.1| carbohydrate diacid regulator [Burkholderia pseudomallei 14]
gb|EDS84946.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
S13]
Length = 406
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|ZP_01325046.1| hypothetical protein BpseP_03001028 [Burkholderia pseudomallei
Pasteur]
gb|EDO92955.1| putative carbohydrate diacid regulator [Burkholderia pseudomallei
Pasteur 52237]
Length = 405
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|ZP_01335471.1| hypothetical protein Bpse4_03001964 [Burkholderia pseudomallei
406e]
ref|ZP_02112329.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
ref|ZP_02458084.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
ref|ZP_02484090.1| putative transcriptional regulator [Burkholderia pseudomallei 7894]
ref|ZP_02492317.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
13177]
ref|ZP_02508403.1| putative transcriptional regulator [Burkholderia pseudomallei
BCC215]
Length = 406
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|YP_110150.1| transcriptional regulator [Burkholderia pseudomallei K96243]
ref|ZP_02104624.1| carbohydrate diacid regulator [Burkholderia pseudomallei 1106b]
ref|ZP_02449905.1| carbohydrate diacid regulator [Burkholderia pseudomallei 91]
ref|ZP_02473640.1| carbohydrate diacid regulator [Burkholderia pseudomallei B7210]
ref|ZP_02500463.1| carbohydrate diacid regulator [Burkholderia pseudomallei 112]
emb|CAH37574.1| putative transcriptional regulator [Burkholderia pseudomallei
K96243]
Length = 406
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D + A ++ G+ TAQ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 DTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDD 371
>ref|ZP_02406245.1| putative purine catabolism transcriptional regulator [Burkholderia
pseudomallei DM98]
Length = 384
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
+ + + AL E+GN ++ A++L IHRN+L ++L + QSG L
Sbjct: 315 LIETLEALLQENGNAIKAAEQLSIHRNTLNHRLRRIETQSGQSL 358
>ref|YP_118782.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
dbj|BAD57418.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 418
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 210 TRQFHQFLSP---QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
TRQ L P +++D + A N TA++L++H N++ Y+L + AQ +G+ L
Sbjct: 333 TRQVAGLLEPLDAHPELSDTMRAYLRNDMNRRMTARQLFVHPNTVDYRLRRIAQLTGIDL 392
Query: 267 KQLDDLAFAHLFLL 280
++ A + LL
Sbjct: 393 ATSAGISQAAIALL 406
>ref|YP_001486167.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
gb|ABV61607.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 291
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQL 269
N + A+ LY+HRNSLQY++DKF +++ + ++
Sbjct: 242 NASKAAKALYVHRNSLQYRIDKFIERTAIDIRHF 275
>ref|NP_781580.1| transcriptional regulatory protein [Clostridium tetani E88]
gb|AAO35517.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 396
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 222 DMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
D+ D + + + NL +TA L+IH+N+++Y+L K + +GL +K +D
Sbjct: 327 DLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHED 376
>ref|YP_517104.1| hypothetical protein DSY0871 [Desulfitobacterium hafniense Y51]
dbj|BAE82660.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 512
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 54/217 (24%)
Query: 85 IYLNHQQALPDDLVELLQQM---------IAGLEVILPISATQTAFLCRQAISIKVLRWL 135
I+ + AL +D+++L ++ I ++I+ +S TA+ +
Sbjct: 300 IFSEKKDALYEDVIDLFPEVCKKIPGKAFIYEFKIIVILSGDSTAY-----------DPI 348
Query: 136 EDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQ----------QS 185
+ P LES + + W + T F C L AYL+ QS
Sbjct: 349 TQIKPFLESK--------IIDGWKSCISFT----FPSPCDLKNAYLQCLAAATFGCSLQS 396
Query: 186 GRKLLTFSGLMLWSLLSHHTF--------LALTRQFHQF-LSPQSDMADVVHALWSEHGN 236
+ + M + LLS L L R+ +F ++ + A +H H N
Sbjct: 397 RNMIFDYKDYMGYHLLSKAATYFNTTDFCLPLAREIMKFDIAHNTQYAKTLHHYLRNHKN 456
Query: 237 LVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLA 273
+ ++ L++HRN++ Y+L++ + GL LDD A
Sbjct: 457 INIVSKNLHLHRNTVVYRLERLKELFGL---DLDDFA 490
>ref|YP_001885175.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
gb|ACD22723.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 313
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 201 LSHHTFLALTRQFHQ-FLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFA 259
LS + + +F+ F D + + ++ NL ++A+ LY+HRN+L Y+LDK
Sbjct: 226 LSEEKKVKILSKFNDGFNKLDDDTINTIEVFFNCDLNLSESAKNLYVHRNTLIYRLDKIK 285
Query: 260 QQSGLHLKQLDD 271
+ + ++ ++
Sbjct: 286 KCTSYDIRNFNE 297
>ref|YP_001634135.1| transcriptional regulator, CdaR [Chloroflexus aurantiacus J-10-fl]
ref|ZP_02988964.1| transcriptional regulator, CdaR [Chloroflexus sp. Y-400-fl]
gb|ABY33746.1| transcriptional regulator, CdaR [Chloroflexus aurantiacus J-10-fl]
gb|EDU23217.1| transcriptional regulator, CdaR [Chloroflexus sp. Y-400-fl]
Length = 517
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+D+ + A ++ GNL T++ L++HRN+L Y+L++ + SG+ L ++
Sbjct: 448 ADLIKTLEAYFNHLGNLRATSEALHVHRNTLLYRLERIKEISGMDLDNAEE 498
>ref|YP_051389.1| carbohydrate diacid transcriptional activator CdaR [Erwinia
carotovora subsp. atroseptica SCRI1043]
emb|CAG76198.1| carbohydrate diacid regulator [Erwinia carotovora subsp.
atroseptica SCRI1043]
Length = 385
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA+ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TAKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|YP_001186934.1| transcriptional regulator, CdaR [Pseudomonas mendocina ymp]
gb|ABP84202.1| transcriptional regulator, CdaR family [Pseudomonas mendocina ymp]
Length = 371
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 231 WSEHGNLVQ-TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
W H VQ AQ L IHRN+L+Y+L++ + SGL L +LD
Sbjct: 313 WCAHDGQVQLCAQALGIHRNTLRYRLERIGELSGLDLDRLD 353
>ref|ZP_02170096.1| putative transcriptional regulator, PucR family [Bacillus
selenitireducens MLS10]
gb|EDP82951.1| putative transcriptional regulator, PucR family [Bacillus
selenitireducens MLS10]
Length = 583
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 177 LTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFHQFLSPQSDMADVVHAL--WSEH 234
+T LR S +KL F L SL+ LS + + D++ L + EH
Sbjct: 486 VTELLRTVSPQKLREFYESTLKSLV---------------LSSKKEDEDLIKTLTVYLEH 530
Query: 235 -GNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
G + +TA+ L++HRN++ Y+L K + ++LK DD+
Sbjct: 531 NGQIAETAKALFVHRNTVIYRLKKCEDKLQVNLKHADDI 569
>ref|ZP_02170032.1| transcriptional regulator, CdaR [Bacillus selenitireducens MLS10]
gb|EDP83550.1| transcriptional regulator, CdaR [Bacillus selenitireducens MLS10]
Length = 388
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 133 RWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTF 192
R L+ +L ++ F VG + LR ++E + ++A + K++ +
Sbjct: 231 RELKQILQEIDRQFQFQAQAGVGTVVH--VPEELRRSYQEAKRAISA---KGHSEKVVFY 285
Query: 193 SGLMLWSLLSHHTFLALTRQFHQFLSP---QSDMADVVHALWSEHGNLVQTAQRLYIHRN 249
S L L L+ + + R + + + D+ D + + L TA+ L+IH N
Sbjct: 286 SELSLELALAEISTMTRERLIEKVIGSIMNEKDLMDTLDVFIEHNLRLKPTAEALHIHIN 345
Query: 250 SLQYKLDKFAQQSGLHLKQLDDLA 273
+L Y+L + ++ +G +K+ +D+
Sbjct: 346 TLHYRLKRISELTGKSVKRTEDIV 369
>ref|NP_799625.1| hypothetical protein VPA0115 [Vibrio parahaemolyticus RIMD 2210633]
dbj|BAC61458.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
Length = 380
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGL 264
AL+ +GN+ + ++ L+IHRN+L+Y+L+K + +GL
Sbjct: 324 ALFECNGNVTECSKMLFIHRNTLRYRLEKITEITGL 359
>ref|ZP_01476734.1| hypothetical protein VEx2w_02000742 [Vibrio sp. Ex25]
gb|EDN58993.1| carbohydrate diacid regulator [Vibrio sp. Ex25]
Length = 380
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGL 264
AL+ +GN+ + ++ L+IHRN+L+Y+L+K + +GL
Sbjct: 324 ALFECNGNVTECSKMLFIHRNTLRYRLEKITEITGL 359
>ref|ZP_01990305.1| carbohydrate diacid regulator [Vibrio parahaemolyticus AQ3810]
gb|EDM59849.1| carbohydrate diacid regulator [Vibrio parahaemolyticus AQ3810]
Length = 380
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGL 264
AL+ +GN+ + ++ L+IHRN+L+Y+L+K + +GL
Sbjct: 324 ALFECNGNVTECSKMLFIHRNTLRYRLEKITEITGL 359
>ref|ZP_01261381.1| hypothetical protein V12G01_03696 [Vibrio alginolyticus 12G01]
gb|EAS75272.1| hypothetical protein V12G01_03696 [Vibrio alginolyticus 12G01]
Length = 380
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGL 264
AL+ +GN+ + ++ L+IHRN+L+Y+L+K + +GL
Sbjct: 324 ALFECNGNVTECSKMLFIHRNTLRYRLEKITEITGL 359
>ref|YP_001349683.1| hypothetical protein PSPA7_4330 [Pseudomonas aeruginosa PA7]
gb|ABR84909.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 370
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 219 PQSDMADVVHALWSEH-GNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD 270
PQ +A + A W H G+ AQ L IHRNSL+Y+L++ A SGL L +L+
Sbjct: 302 PQGLLAATL-ACWCAHDGHPQACAQALGIHRNSLRYRLERIASISGLDLGRLE 353
>ref|YP_001485863.1| hypothetical protein BPUM_0611 [Bacillus pumilus SAFR-032]
gb|ABV61303.1| hypothetical protein BPUM_0611 [Bacillus pumilus SAFR-032]
Length = 552
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 215 QFLSP----QSDMADVVHAL---WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLK 267
+ LSP + AD++H L + + N+ ++A L+IHR++L Y+L + ++G LK
Sbjct: 465 ELLSPLLYTKKQGADLIHTLEVYLAHNENIQKSAGELFIHRHTLSYRLKQIETRTGCSLK 524
Query: 268 QLDDLAFAHLFLLKY 282
DD L ++ Y
Sbjct: 525 STDDRMKLQLSIMAY 539
>ref|YP_888283.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
gb|ABK73434.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
Length = 364
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 231 WSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
++++G++ TA LY HRN++ ++ +F + +G+ L+ LA L LL
Sbjct: 313 FADNGSVADTASVLYCHRNTVMNRIRRFEEATGISLRSPRSLAMVQLCLL 362
>ref|YP_704314.1| hypothetical protein RHA1_ro04370 [Rhodococcus sp. RHA1]
gb|ABG96156.1| conserved hypothetical protein [Rhodococcus sp. RHA1]
Length = 563
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 218 SPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
S +D +++ A E GN+ A+RL IHRN++ KLD+ ++ G+ +++ ++
Sbjct: 483 SSHADTEELLFAYLEEGGNINAAARRLRIHRNTMIAKLDRTSRLIGMDIREPEN 536
>ref|YP_176744.1| sugar diacid utilization regulator [Bacillus clausii KSM-K16]
dbj|BAD65783.1| sugar diacid utilization regulator [Bacillus clausii KSM-K16]
Length = 371
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 217 LSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLA--- 273
+S + ++ + A +L +TA+ L++H N+L Y+ K Q +GL +++ +D
Sbjct: 291 VSDEQELLGTLAAFLENDQSLKRTAEALHVHINTLHYRFQKLKQHTGLDVRKSEDFVLFY 350
Query: 274 FAHLFL 279
AHLFL
Sbjct: 351 LAHLFL 356
>ref|YP_001448966.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
gb|ABU74739.1| hypothetical protein VIBHAR_06864 [Vibrio harveyi ATCC BAA-1116]
Length = 376
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 223 MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGL 264
+ + A + +GN A+ LYIHRN+L+Y+LD+ ++ +G+
Sbjct: 314 LVKTLEAYFQANGNANDCAKALYIHRNTLRYRLDRISEVTGI 355
>ref|ZP_02327337.1| YsfB [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 75
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
++ D + +E+G +T +RL IHRN+L+Y+L++ + +G ++ DL
Sbjct: 7 GELYDTLQVFLAENGEPHRTTERLIIHRNTLRYRLNRITEITGKDPRRFHDL 58
>ref|YP_001701660.1| Conserved hypothetical protein [Mycobacterium abscessus]
emb|CAM61006.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 380
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 135 LEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSG 194
+E++L + ++ G + VG A +A G + C + E L A +++ + + +
Sbjct: 232 VENVLRSAQAISGASAEYGVGLARRGLA-GAHQSCIDAERALRMARVQKLPAARFVDW-- 288
Query: 195 LMLWSLLSHHTFLA-LTRQFHQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQY 253
+ SLL + LA L H+ + D+A+ V +L + A+RL +H NS+ Y
Sbjct: 289 WLEASLLDFQSQLAVLFDAVHETATKYPDLAEAVLVFADCGFSLARAARRLQVHPNSVAY 348
Query: 254 KLDKFAQQSGLHLKQLDDLA 273
+L ++ Q SG + D LA
Sbjct: 349 RLTRWQQLSGADPRTFDGLA 368
>ref|YP_080532.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
ref|YP_092957.1| PucR [Bacillus licheniformis ATCC 14580]
gb|AAU24894.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
gb|AAU42264.1| PucR [Bacillus licheniformis DSM 13]
Length = 532
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 210 TRQFHQFLS-PQSD--MADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHL 266
T HQ S P+ D + + H + +TA+RLYIHRN++ Y+L+K + G L
Sbjct: 452 THALHQLASLPKDDPGLLQTLSVYLETHCQISETAKRLYIHRNTVIYRLEKCEELLGKSL 511
Query: 267 KQLD 270
K D
Sbjct: 512 KDAD 515
>ref|ZP_02950471.1| purine catabolism regulatory protein-like family [Clostridium
butyricum 5521]
gb|EDT74429.1| purine catabolism regulatory protein-like family [Clostridium
butyricum 5521]
Length = 386
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 220 QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQ-----SGLHLKQLDDLAF 274
+D V+ S +G+L TA LYIHRN++ YK+ K + S L ++++ D+A+
Sbjct: 321 NTDYFTVLRCYLSYNGSLQDTANELYIHRNTVNYKIKKSEEILNVDLSKLEIREMIDIAY 380
>ref|ZP_01291889.1| Response regulator receiver [delta proteobacterium MLMS-1]
gb|EAT01694.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 195
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 214 HQFLSPQSDMAD---VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 258
H F +P A+ + L HGN+ Q AQRL +HR +LQ KL KF
Sbjct: 144 HDFPAPSLARAEWEHINRVLTDCHGNISQAAQRLGLHRRTLQRKLQKF 191
>ref|ZP_00921195.1| COG3835: Sugar diacid utilization regulator [Shigella dysenteriae
1012]
ref|YP_539219.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli UTI89]
ref|YP_851362.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli APEC O1]
ref|YP_001461333.1| carbohydrate diacid regulator [Escherichia coli E24377A]
gb|ABE05688.1| carbohydrate diacid regulator [Escherichia coli UTI89]
gb|ABI99647.1| carbohydrate diacid regulator [Escherichia coli APEC O1]
gb|ABV18596.1| carbohydrate diacid regulator [Escherichia coli E24377A]
Length = 376
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 319 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 362
>ref|NP_752149.2| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli CFT073]
Length = 385
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 328 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|YP_001430540.1| transcriptional regulator, CdaR [Roseiflexus castenholzii DSM
13941]
gb|ABU56522.1| transcriptional regulator, CdaR [Roseiflexus castenholzii DSM
13941]
Length = 525
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 226 VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSG 263
+ A + +GNL +TA+ L+IHRN+L Y+L + + SG
Sbjct: 458 TLEAFFDHNGNLARTAEALHIHRNTLLYRLTRIKEISG 495
>ref|YP_894022.1| possible carbohydrate diacid regulator [Bacillus thuringiensis str.
Al Hakam]
ref|ZP_02604279.1| possible carbohydrate diacid regulator [Bacillus cereus 03BB108]
gb|ABK84515.1| transcriptional regulator, CdaR family [Bacillus thuringiensis str.
Al Hakam]
Length = 371
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTAQ+L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAQQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLL 358
>ref|NP_308193.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. Sakai]
ref|NP_285858.2| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 EDL933]
ref|ZP_02740173.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4045]
ref|ZP_02749506.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4206]
ref|ZP_02770246.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4115]
ref|ZP_02776404.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4113]
ref|ZP_02780783.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4401]
ref|ZP_02789337.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4501]
ref|ZP_02795371.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4486]
ref|ZP_02802007.1| carbohydrate diacid regulator [Escherichia coli O157:H7 str.
EC4196]
ref|ZP_02807062.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4076]
ref|ZP_02814279.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC869]
ref|ZP_02817551.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC4042]
ref|ZP_02827325.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli O157:H7 str. EC508]
dbj|BAB33589.1| regulator protein of D-galactarate, D-glucarate and D-glycerate
metabolism [Escherichia coli O157:H7 str. Sakai]
gb|EDU31522.1| carbohydrate diacid regulator [Escherichia coli O157:H7 str.
EC4196]
Length = 385
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 328 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|AP_000823.1| DNA-binding transcriptional regulator [Escherichia coli W3110]
ref|NP_414704.4| DNA-binding transcriptional activator [Escherichia coli str. K-12
substr. MG1655]
ref|YP_001726438.1| transcriptional regulator, CdaR [Escherichia coli ATCC 8739]
ref|YP_001729119.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
substr. DH10B]
sp|P37047.2|CDAR_ECOLI Carbohydrate diacid regulator (Sugar diacid regulator)
gb|AAB08592.1| hypothetical [Escherichia coli]
dbj|BAB96739.2| DNA-binding transcriptional regulator [Escherichia coli W3110]
gb|AAC73273.2| DNA-binding transcriptional activator [Escherichia coli str. K-12
substr. MG1655]
gb|ACA79111.1| transcriptional regulator, CdaR [Escherichia coli ATCC 8739]
gb|ACB01341.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
substr. DH10B]
Length = 385
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 328 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|ZP_00716956.1| COG3835: Sugar diacid utilization regulator [Escherichia coli B7A]
ref|ZP_00722849.1| COG3835: Sugar diacid utilization regulator [Escherichia coli
E110019]
ref|ZP_00724194.1| COG3835: Sugar diacid utilization regulator [Escherichia coli F11]
ref|ZP_00734747.1| COG3835: Sugar diacid utilization regulator [Escherichia coli
53638]
ref|ZP_00924124.1| COG3835: Sugar diacid utilization regulator [Escherichia coli
101-1]
ref|YP_668111.1| carbohydrate diacid transcriptional activator CdaR [Escherichia
coli 536]
ref|YP_001456947.1| carbohydrate diacid regulator [Escherichia coli HS]
ref|YP_309202.2| carbohydrate diacid transcriptional activator CdaR [Shigella sonnei
Ss046]
gb|ABG68212.1| carbohydrate diacid regulator [Escherichia coli 536]
gb|ABV04564.1| carbohydrate diacid regulator [Escherichia coli HS]
Length = 385
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 328 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|ZP_00237211.1| carbohydrate diacid regulator [Bacillus cereus G9241]
gb|EAL15067.1| carbohydrate diacid regulator [Bacillus cereus G9241]
Length = 371
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTAQ+L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAQQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLL 358
>ref|YP_001742291.1| carbohydrate diacid regulator [Escherichia coli SMS-3-5]
gb|ACB15617.1| carbohydrate diacid regulator [Escherichia coli SMS-3-5]
Length = 385
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 328 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|YP_174266.1| regulator of polyketide synthase expression [Bacillus clausii
KSM-K16]
dbj|BAD63305.1| regulator of polyketide synthase expression [Bacillus clausii
KSM-K16]
Length = 410
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 220 QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQ 268
Q+ + + + + G+L A+ L++H NSLQY+L + A+ +GLHL+
Sbjct: 323 QTSLLETLAMYIEKDGHLTAAAKALHVHPNSLQYRLKRIAELTGLHLRN 371
>gb|AAZ86967.1| conserved hypothetical protein [Shigella sonnei Ss046]
Length = 391
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 334 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 377
>ref|ZP_02949680.1| conserved hypothetical protein [Clostridium butyricum 5521]
gb|EDT75311.1| conserved hypothetical protein [Clostridium butyricum 5521]
Length = 314
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 188 KLLTFSGLMLWSLLSHHTFLALTR---QFHQ-FLSPQSDMADVVHALWSEHGNLVQTAQR 243
K+ LM S++ + R +F++ F +D+ + + + NL + +++
Sbjct: 210 KVFNMDSLMFESIIDNLNEDEKNRIIAKFNEGFERLDNDIIQSIDVFFELNLNLSEASKK 269
Query: 244 LYIHRNSLQYKLDKFAQQSGLHLKQLDD-----LAFA 275
LY+HRN+L Y+LDK + + +++ ++ +AFA
Sbjct: 270 LYVHRNTLIYRLDKIQKCTSYDIRKFNEAVIFKVAFA 306
>gb|AAN78693.1|AE016755_193 Carbohydrate diacid regulator [Escherichia coli CFT073]
Length = 391
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 334 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 377
>gb|AAG54466.1|AE005192_8 orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
Length = 391
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 334 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 377
>ref|YP_001454725.1| hypothetical protein CKO_03205 [Citrobacter koseri ATCC BAA-895]
gb|ABV14289.1| hypothetical protein CKO_03205 [Citrobacter koseri ATCC BAA-895]
Length = 403
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 346 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 389
>ref|YP_001571784.1| hypothetical protein SARI_02794 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gb|ABX22642.1| hypothetical protein SARI_02794 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 403
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 358 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 389
>ref|YP_215197.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gb|AAX64116.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
Length = 385
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFL 279
T++ L+IHRN+L+Y+L++ ++ +GL L DD ++ L
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVVL 379
>ref|YP_001126381.1| hypothetical protein GTNG_2287 [Geobacillus thermodenitrificans
NG80-2]
gb|ABO67636.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 560
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 224 ADVVHALWS---EHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
D+VH L + GN+ QTA+ L +HR++L Y+L K +G L DDL
Sbjct: 492 GDLVHTLTTYIRNQGNISQTARELCVHRHTLLYRLKKIESLTGRSLMNPDDL 543
>ref|YP_001473257.1| transcriptional regulator, CdaR [Shewanella sediminis HAW-EB3]
gb|ABV36129.1| transcriptional regulator, CdaR [Shewanella sediminis HAW-EB3]
Length = 385
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
A L+IHRN+L+Y+L+K Q +G+++++LD L
Sbjct: 339 ANTLFIHRNTLRYRLEKIQQITGVNIQELDGL 370
>ref|YP_401901.1| hypothetical protein SDY_0180 [Shigella dysenteriae Sd197]
gb|ABB60412.1| hypothetical protein SDY_0180 [Shigella dysenteriae Sd197]
Length = 108
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 229 ALWSEHG-NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
A W H + T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 51 AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDD 94
>ref|ZP_02832784.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
Length = 385
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|NP_459215.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
typhimurium LT2]
ref|ZP_02340358.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
ref|ZP_02344342.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
ref|ZP_02562385.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
ref|ZP_02566272.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
ref|ZP_02571194.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
ref|ZP_02653563.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
ref|ZP_02655574.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
ref|ZP_02660044.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
ref|ZP_02669993.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
ref|ZP_02674333.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
ref|ZP_02685898.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
ref|ZP_02698132.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gb|AAL19174.1| putative inner membrane protein [Salmonella typhimurium LT2]
Length = 385
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|YP_001586543.1| hypothetical protein SPAB_00268 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gb|ABX65710.1| hypothetical protein SPAB_00268 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 385
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|NP_454818.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
ref|NP_804093.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Typhi Ty2]
ref|ZP_02348914.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
ref|ZP_02646998.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
ref|ZP_02676240.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
ref|ZP_02706555.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
pir||AD0528 conserved hypothetical protein STY0232 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
emb|CAD01364.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gb|AAO67942.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
Length = 385
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|YP_149558.1| carbohydrate diacid transcriptional activator CdaR [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gb|AAV76246.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
Length = 385
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|ZP_01789426.1| hypothetical protein CGSHi3655_01442 [Haemophilus influenzae 3655]
gb|EDJ92281.1| hypothetical protein CGSHi3655_01442 [Haemophilus influenzae 3655]
Length = 225
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 236 NLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+L TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 178 DLYLTAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 213
>ref|YP_001396499.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
gb|EDK35128.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 410
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 221 SDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLD-----DLAF 274
+ + + + +E+ NL+ TA+ L+IH+N+L+Y++ + + +L+ ++ D+AF
Sbjct: 342 TSLVETLKVYINENCNLIHTAEELFIHKNTLKYRIKRIEEILNCNLRNMEHLFRFDMAF 400
>ref|YP_001175440.1| carbohydrate diacid transcriptional activator CdaR [Enterobacter
sp. 638]
gb|ABP59389.1| transcriptional regulator, CdaR family [Enterobacter sp. 638]
Length = 385
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 340 TSKALFIHRNTLEYRLNRISELTGLDLGNFDD 371
>ref|YP_001094653.1| transcriptional regulator, CdaR [Shewanella loihica PV-4]
gb|ABO24394.1| transcriptional regulator, CdaR [Shewanella loihica PV-4]
Length = 387
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 241 AQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDL 272
A+ L+IHRN+L+Y+LDK AQ + + +++LD L
Sbjct: 339 AKALFIHRNTLRYRLDKIAQITKVDIQKLDGL 370
>ref|ZP_01797575.1| hypothetical protein CGSHiR3021_00717 [Haemophilus influenzae
R3021]
gb|EDK13148.1| hypothetical protein CGSHiR3021_00717 [Haemophilus influenzae
22.4-21]
Length = 387
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 344 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 375
>ref|ZP_02524019.1| Carbohydrate diacid regulator [Bacillus cereus AH1134]
Length = 371
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTA++L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAKQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALL 358
>ref|ZP_02586368.1| Carbohydrate diacid regulator [Bacillus cereus G9842]
Length = 371
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTA++L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAKQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALL 358
>ref|ZP_00740069.1| Carbohydrate diacid regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gb|EAO55670.1| Carbohydrate diacid regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 374
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTA++L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 320 QTAKQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALL 361
>ref|ZP_01172822.1| hypothetical Sugar diacid utilization regulator [Bacillus sp. NRRL
B-14911]
gb|EAR64473.1| hypothetical Sugar diacid utilization regulator [Bacillus sp. NRRL
B-14911]
Length = 373
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 220 QSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+ ++ + + E+G+ A RLYIHRN+L+Y+L++ + +G + + D
Sbjct: 308 KGELQETLRIYIEENGDSSSAASRLYIHRNTLRYRLERIKELTGKDPRSIKD 359
>ref|YP_001274529.1| transcriptional regulator, CdaR [Roseiflexus sp. RS-1]
gb|ABQ88579.1| transcriptional regulator, CdaR family [Roseiflexus sp. RS-1]
Length = 525
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 226 VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSG 263
+ A + +GNL +TA L+IHRN+L Y+L + + SG
Sbjct: 458 TLEAFFEHNGNLARTADALHIHRNTLLYRLTRIKEISG 495
>ref|ZP_01784827.1| hypothetical protein CGSHi22121_09510 [Haemophilus influenzae
22.1-21]
gb|EDJ88254.1| hypothetical protein CGSHi22121_09510 [Haemophilus influenzae
22.1-21]
Length = 393
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 350 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 381
>ref|NP_831080.1| Carbohydrate diacid regulator [Bacillus cereus ATCC 14579]
ref|ZP_02579164.1| Carbohydrate diacid regulator [Bacillus cereus B4264]
gb|AAP08281.1| Carbohydrate diacid regulator [Bacillus cereus ATCC 14579]
Length = 371
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTA++L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAKQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALL 358
>ref|YP_001644088.1| transcriptional regulator, CdaR [Bacillus weihenstephanensis KBAB4]
gb|ABY42460.1| transcriptional regulator, CdaR [Bacillus weihenstephanensis KBAB4]
Length = 371
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTA++L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAEQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALL 358
>ref|ZP_01787303.1| hypothetical protein CGSHi22421_01607 [Haemophilus influenzae
22.4-21]
gb|EDJ90397.1| hypothetical protein CGSHi22421_01607 [Haemophilus influenzae
R3021]
Length = 393
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 350 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 381
>ref|YP_001333867.1| regulator of D-galactarate, D-glucarate and D-glycerate metabolism
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gb|ABR75637.1| regulator of D-galactarate, D-glucarate and D-glycerate metabolism
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 403
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
T++ L+IHRN+L+Y+L++ ++ +GL L DD
Sbjct: 358 TSKALFIHRNTLEYRLNRISELTGLDLGSFDD 389
>ref|YP_001511854.1| transcriptional regulator, CdaR [Alkaliphilus oremlandii OhILAs]
gb|ABW17858.1| transcriptional regulator, CdaR [Alkaliphilus oremlandii OhILAs]
Length = 551
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 187 RKLLTFSGLMLWSLLSH-HTFLALTRQFHQFLSP--------QSDMADVVHALWSEHGNL 237
RK++ F L ++ +L H L R +++ + P +++ + + HGNL
Sbjct: 442 RKIIFFEDLGVYKILCQDHLTEELERFYNKTIEPLVKYDEKKSTELIKTLEYYFEYHGNL 501
Query: 238 VQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+ ++ L+ H N+ Y++++ Q +GL+++ +D
Sbjct: 502 KKISEALFTHYNTTLYRIERIKQITGLNIECSND 535
>ref|ZP_01791190.1| hypothetical protein CGSHiAA_03751 [Haemophilus influenzae PittAA]
gb|EDK07259.1| hypothetical protein CGSHiAA_03751 [Haemophilus influenzae PittAA]
Length = 368
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 325 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 356
>ref|ZP_01793332.1| hypothetical protein CGSHiHH_02966 [Haemophilus influenzae PittHH]
gb|EDK09087.1| hypothetical protein CGSHiHH_02966 [Haemophilus influenzae PittHH]
Length = 368
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 325 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 356
>ref|YP_247816.1| hypothetical protein NTHI0172 [Haemophilus influenzae 86-028NP]
gb|AAX87156.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
Length = 368
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 325 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 356
>ref|NP_438266.1| hypothetical protein HI0093 [Haemophilus influenzae Rd KW20]
sp|P44509|Y093_HAEIN Uncharacterized protein HI0093
gb|AAC21771.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
Length = 368
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 325 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 356
>ref|ZP_00157686.2| COG3835: Sugar diacid utilization regulator [Haemophilus influenzae
R2866]
ref|ZP_01795198.1| hypothetical protein CGSHiII_10143 [Haemophilus influenzae PittII]
gb|EDK11298.1| hypothetical protein CGSHiII_10143 [Haemophilus influenzae PittII]
Length = 368
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 240 TAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
TA++L++H N+L+Y+L+K Q +GL ++DD
Sbjct: 325 TAEKLFVHPNTLRYRLNKIEQITGLFFNKIDD 356
>ref|ZP_02444751.1| hypothetical protein ANACOL_04080 [Anaerotruncus colihominis DSM
17241]
gb|EDS09306.1| hypothetical protein ANACOL_04080 [Anaerotruncus colihominis DSM
17241]
Length = 387
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 226 VVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLK 267
++ A + G++ AQ LY+H+N+LQYKL K +G ++
Sbjct: 319 ILEAYYESEGSISAAAQALYMHKNTLQYKLKKLCDITGRDVR 360
>ref|ZP_02253507.1| transcriptional regulator, putative [Bacillus cereus AH187]
ref|ZP_02598353.1| transcriptional regulator, putative [Bacillus cereus H3081.97]
Length = 371
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 239 QTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLL 280
QTA++L+IH N+L Y+L K + +GL KQ DL + LL
Sbjct: 317 QTAEQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLL 358
>ref|YP_925460.1| hypothetical protein Noca_4276 [Nocardioides sp. JS614]
gb|ABL83773.1| transcriptional regulator, CdaR family [Nocardioides sp. JS614]
Length = 552
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQ 260
DV + GN+ ++A+RL IHRN++ YKLD+ ++
Sbjct: 479 DVAREYVAAGGNVNESARRLGIHRNTMLYKLDRISR 514
>ref|ZP_02357655.1| carbohydrate diacid regulator [Burkholderia oklahomensis EO147]
ref|ZP_02367593.1| carbohydrate diacid regulator [Burkholderia oklahomensis C6786]
Length = 400
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 225 DVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDD 271
+ + A ++ G+ TA+ L IHRN+L Y+L + +GL L +DD
Sbjct: 325 ETLKAWYANDGHPSATAEALGIHRNTLDYRLQQIRDATGLDLGSMDD 371
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.324 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 1,256,829,054
Number of extensions: 50934361
Number of successful extensions: 106934
Number of sequences better than 10.0: 383
Number of HSP's gapped: 107599
Number of HSP's successfully gapped: 384
Length of query: 282
Length of database: 2,222,278,849
Length adjustment: 132
Effective length of query: 150
Effective length of database: 1,362,285,121
Effective search space: 204342768150
Effective search space used: 204342768150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)