BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E09A05_A17_01.ab1'
        (576 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 12 Sequences     : less than 12 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 3896 693 |=========================================================
   6310 3203 532 |============================================
   3980 2671 726 |============================================================
   2510 1945 403 |=================================
   1580 1542 346 |============================
   1000 1196 229 |===================
    631  967 203 |================
    398  764 157 |=============
    251  607 119 |=========
    158  488 102 |========
    100  386  72 |======
   63.1  314  71 |=====
   39.8  243  42 |===
   25.1  201  39 |===
   15.8  162  19 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 143  <<<<<<<<<<<<<<<<<
   10.0  143  20 |=
   6.31  123  12 |=
   3.98  111   9 |:
   2.51  102   9 |:
   1.58   93   4 |:
   1.00   89   2 |:
   0.63   87  10 |:
   0.40   77   2 |:
   0.25   75   2 |:
   0.16   73   4 |:
   0.10   69   1 |:
  0.063   68   0 |
  0.040   68   2 |:
  0.025   66   0 |
  0.016   66   3 |:
  0.010   63   0 |
 0.0063   63   1 |:
 0.0040   62   0 |
 0.0025   62   0 |
 0.0016   62   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|3608481|gb|AAD13388.1|(AF088913) ribosomal protein... +1   698  8.1e-68   1
gi|1710530|sp|P49637|RL2A_ARATH60S RIBOSOMAL PROTEIN ... +1   688  9.3e-67   1
gi|7959355|dbj|BAA96068.1|(AB042856) 60S ribosomal pr... +1   685  1.9e-66   1
gi|9295692|gb|AAF86998.1|AC005292_7(AC005292) F26F24.... +1   674  2.8e-65   1
gi|11546004|gb|AAG37952.1|(AC087079) Hypothetical pro... +1   282  1.1e-49   2
gi|1350711|sp|P48160|RL2A_DICDI60S RIBOSOMAL PROTEIN ... +1   523  2.8e-49   1
gi|132846|sp|P18445|RL2A_RAT60S RIBOSOMAL PROTEIN L27... +1   522  3.6e-49   1
gi|4506625ref|NP_000981.1| ribosomal protein L27a [Ho... +1   518  9.6e-49   1
gi|3122699|sp|O01358|RL2A_OSCBR60S RIBOSOMAL PROTEIN ... +1   518  9.6e-49   1
gi|4760604|dbj|BAA77362.1|(AB020237) ribosomal protei... +1   515  2.0e-48   1
gi|6321335ref|NP_011412.1| Ribosomal protein L28 (L29... +1   514  2.6e-48   1
gi|132847|sp|P02406|RL28_YEAST60S RIBOSOMAL PROTEIN L... +1   512  4.2e-48   1
gi|132844|sp|P14115|RL2A_MOUSE60S RIBOSOMAL PROTEIN L... +1   509  8.6e-48   1
gi|1350712|sp|P47830|RL2A_XENLA60S RIBOSOMAL PROTEIN ... +1   509  8.6e-48   1
gi|132845|sp|P08978|RL28_NEUCR60S RIBOSOMAL PROTEIN L... +1   502  4.8e-47   1
gi|2500272|sp|Q94530|RL2B_DROME60S RIBOSOMAL PROTEIN ... +1   497  1.6e-46   1
gi|10727335|gb|AAF51006.2|(AE003576) RpL27A gene prod... +1   497  1.6e-46   1
gi|730551|sp|P41092|RL2A_DROME60S RIBOSOMAL PROTEIN L... +1   496  2.1e-46   1
gi|5921511|emb|CAB56512.1|(AJ249749) putative 60S rib... +1   496  2.1e-46   1
gi|2500274|sp|P78987|RL2A_ERYGR60S RIBOSOMAL PROTEIN ... +1   487  1.9e-45   1
gi|400993|sp|Q00454|RL2A_TETTH60S RIBOSOMAL PROTEIN L... +1   483  4.9e-45   1
gi|1710529|sp|P36585|R28A_SCHPO60S RIBOSOMAL PROTEIN ... +1   475  3.5e-44   1
gi|12230515|sp|P57728|R28B_SCHPO60S RIBOSOMAL PROTEIN... +1   470  1.2e-43   1
gi|540075|gb|AAA73459.1|(U13207) large subunit riboso... +1   468  1.9e-43   1
gi|1350705|sp|P48161|RL2A_EUPCR60S RIBOSOMAL PROTEIN ... +1   468  1.9e-43   1
gi|161844|gb|AAA30125.1|(M76719) rpL29 [Tetrahymena t... +1   463  6.5e-43   1
gi|2500273|sp|Q27021|RL2A_TENMO60S RIBOSOMAL PROTEIN ... +1   463  6.5e-43   1
gi|1263104|emb|CAA65760.1|(X97045) ORF [Bos taurus]      +1   446  4.1e-41   1
gi|11136707|gb|AAG31288.1|AC009805_1(AC009805) Riboso... +1   433  9.8e-40   1
gi|10305197|gb|AAG16278.1|AC016024_1(AC016024) Riboso... +1   432  1.2e-39   1
gi|10305199|gb|AAG16280.1|AC016024_3(AC016024) riboso... +1   431  1.6e-39   1
gi|6094046|sp|O15883|RL2A_TRYBB60S RIBOSOMAL PROTEIN ... +1   430  2.0e-39   1
gi|12584634|emb|CAC27402.1|(AJ305223) 60S ribosomal p... +1   429  2.6e-39   1
gi|10178306|emb|CAC08391.1|(AL121886) dJ1028D15.2 (si... +1   415  7.9e-38   1
gi|12580751|emb|CAC27069.1|(AJ010592) 60S ribosomal p... +1   393  1.7e-35   1
gi|7674267|sp|O62581|RL2A_ENCCU60S RIBOSOMAL PROTEIN ... +1   355  1.8e-31   1
gi|2982333|gb|AAC32151.1|(AF051252) probable 60S ribo... +1   334  3.0e-29   1
gi|4104078|gb|AAD01931.1|(AF031466) ribosomal protein... +1   288  2.3e-24   1
gi|8698743|gb|AAF78501.1|AC012187_21(AC012187) Contai... +1   146  3.1e-23   2
gi|2996179|gb|AAC32179.1|(AF051765) putative 60S ribo... +1   277  3.3e-23   1
gi|2996177|gb|AAC32178.1|(AF051764) putative 60S ribo... +1   262  1.3e-21   1
gi|3914721|sp|Q29333|RL2A_PIG60S RIBOSOMAL PROTEIN L27A  +1   248  3.9e-20   1
gi|11436069ref|XP_006092.1| ribosomal protein L27a [H... +1   243  1.3e-19   1
gi|1710492|sp|P54047|RL15_METJA50S RIBOSOMAL PROTEIN ... +1   199  6.1e-15   1
gi|3122688|sp|O26133|RL15_METTH50S RIBOSOMAL PROTEIN ... +1   193  2.6e-14   1
gi|132684|sp|P14032|RL15_METVA50S RIBOSOMAL PROTEIN L... +1   192  3.4e-14   1
gi|1881382|dbj|BAA19416.1|(AB001584) ribosomal protei... +1   186  1.5e-13   1
gi|6685880|sp|Q9YF98|RL15_AERPE50S RIBOSOMAL PROTEIN ... +1   185  1.9e-13   1
gi|3914680|sp|O05643|RL15_SULAC50S RIBOSOMAL PROTEIN ... +1   182  3.9e-13   1
gi|7021396|gb|AAF35324.1|(AF222926) ribosomal protein... +1   182  3.9e-13   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 93 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|3608481|gb|AAD13388.1|  (AF088913) ribosomal protein L27a [Petunia x
            hybrida]
            Length = 150

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100

  Plus Strand HSPs:

 Score = 698 (245.7 bits), Expect = 8.1e-68, P = 8.1e-68
 Identities = 131/150 (87%), Positives = 139/150 (92%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASK---ENKAPLIDVTQFGYFKVLGKGVLPQ 441
             FHKLRNKFY P +NIDKLWSLVPQ+VKDK +    +  APLIDVTQ+GYFKVLGKGVLP+
Sbjct:    61 FHKLRNKFYCPTVNIDKLWSLVPQDVKDKVAAGGAKGTAPLIDVTQYGYFKVLGKGVLPE 120

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             NQ VVVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct:   121 NQAVVVKAKLVSKNAEKKIKEAGGAVVLTA 150


 >gi|1710530|sp|P49637|RL2A_ARATH  60S RIBOSOMAL PROTEIN L27A
            >gi|2129719|pir||S71256 ribosomal protein L27a, cytosolic -
            Arabidopsis thaliana >gi|1107487|emb|CAA63025.1| (X91959) 60S
            ribosomal protein L27a [Arabidopsis thaliana]
            >gi|12324756|gb|AAG52338.1|AC011663_17 (AC011663) 60S ribosomal
            protein L27A; 82981-83421 [Arabidopsis thaliana]
            >gi|12325037|gb|AAG52464.1|AC010796_3 (AC010796) 60S ribosomal
            protein L27A; 71521-71081 [Arabidopsis thaliana]
            Length = 146

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 119..140
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..143
   PFAM                 L15: Ribosomal protein L15               107..140
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..105
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..139
__________________


  Plus Strand HSPs:

 Score = 688 (242.2 bits), Expect = 9.3e-67, P = 9.3e-67
 Identities = 127/147 (86%), Positives = 139/147 (94%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             FHKLRNKF+ PI+N+DKLWSLVP++VK K++K+N  PLIDVTQ G+FKVLGKG LP+N+P
Sbjct:    61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDN-VPLIDVTQHGFFKVLGKGHLPENKP 119

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
              VVKAKLISK AEKKIKEAGGAVVLTA
Sbjct:   120 FVVKAKLISKTAEKKIKEAGGAVVLTA 146


 >gi|7959355|dbj|BAA96068.1|  (AB042856) 60S ribosomal protein L27a [Panax
            ginseng]
            Length = 146

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 685 (241.1 bits), Expect = 1.9e-66, P = 1.9e-66
 Identities = 125/147 (85%), Positives = 136/147 (92%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             MTTRFKKN KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct:     1 MTTRFKKNXKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             FH+LRNKFY P++NIDKLWSL+PQE K+KA  +N AP+IDVTQ GYFKVLGKG LP + P
Sbjct:    61 FHRLRNKFYCPVVNIDKLWSLLPQEAKEKADAQN-APVIDVTQHGYFKVLGKGFLPSSHP 119

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
             +VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct:   120 IVVKAKLVSKTAEKKIKEAGGAVVLTA 146


 >gi|9295692|gb|AAF86998.1|AC005292_7  (AC005292) F26F24.13 [Arabidopsis
            thaliana] >gi|11692928|gb|AAG40067.1|AF324716_1 (AF324716)
            F26F24.13 [Arabidopsis thaliana]
            Length = 146

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 674 (237.3 bits), Expect = 2.8e-65, P = 2.8e-65
 Identities = 125/147 (85%), Positives = 136/147 (92%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct:     1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             FHKLRNKF+ PI+N+DKLWSLVP++VK K+SK+N  PLIDVTQ G+FKVLGKG LP+N+P
Sbjct:    61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDN-VPLIDVTQHGFFKVLGKGHLPENKP 119

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
              VVKAKLISK AEKKIKEAGGAVVLTA
Sbjct:   120 FVVKAKLISKTAEKKIKEAGGAVVLTA 146


 >gi|11546004|gb|AAG37952.1|  (AC087079) Hypothetical protein Y37E3.h
            [Caenorhabditis elegans]
            Length = 202

Frame  1 hits (HSPs):   ________________           _______________________
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 282 (99.3 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
 Identities = 55/92 (59%), Positives = 73/92 (79%), Frame = +1

Query:   256 VGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVL 435
             VGMR FH  +N+ Y P +N+++LWSLVPQEV+DKA+   K+P+ID T+ GYFKVLGKG+L
Sbjct:   113 VGMRVFHLNKNQHYCPTVNVERLWSLVPQEVRDKATG-GKSPVIDCTKLGYFKVLGKGLL 171

Query:   436 PQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             P+  P++VKA+  S  AE+KIK+AGGA VL A
Sbjct:   172 PET-PLIVKARFFSHEAEQKIKKAGGACVLVA 202

 Score = 262 (92.2 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
 Identities = 48/64 (75%), Positives = 51/64 (79%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKV-GMR 267
             M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPG+FGKV  +R
Sbjct:     1 MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVLFLR 60

Query:   268 YFHK 279
             YF K
Sbjct:    61 YFFK 64


 >gi|1350711|sp|P48160|RL2A_DICDI  60S RIBOSOMAL PROTEIN L27A
            >gi|7440771|pir||JE0320 ribosomal protein Ddl27a - slime mold
            (Dictyostelium discoideum) >gi|790954|dbj|BAA08873.1| (D50338)
            ribosomal protein [Dictyostelium discoideum]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 101..117
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 121..142
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..145
   PFAM                 L15: Ribosomal protein L15               110..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      110..141
__________________


  Plus Strand HSPs:

 Score = 523 (184.1 bits), Expect = 2.8e-49, P = 2.8e-49
 Identities = 94/148 (63%), Positives = 122/148 (82%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPG+FGK+GMR+
Sbjct:     1 MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEV-KDKASK-ENKAPLIDVTQFGYFKVLGKGVLPQN 444
             FH LRN+++ P ++++K+W+LVP+ V K  A+K +  AP++DVTQ G+FKVLG G+LP  
Sbjct:    61 FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 119

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             QP++VKA+  SK+AEKKIK  GGA +L A
Sbjct:   120 QPIIVKARYFSKVAEKKIKAVGGACILVA 148


 >gi|132846|sp|P18445|RL2A_RAT  60S RIBOSOMAL PROTEIN L27A >gi|71190|pir||R5RTLA
            ribosomal protein L27a, cytosolic [validated] - rat
            >gi|57696|emb|CAA36947.1| (X52733) ribosomal protein L27a (AA 1 -
            148) [Rattus rattus] >gi|227227|prf||1617101A ribosomal protein
            L27a [Rattus norvegicus]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 522 (183.8 bits), Expect = 3.6e-49, P = 3.6e-49
 Identities = 97/148 (65%), Positives = 118/148 (79%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQN 444
             +H  RN+ + P +N+DKLW+LV ++ +  A+K     AP+IDV + GY+KVLGKG LP+ 
Sbjct:    61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 119

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148


 >gi|4506625  ref|NP_000981.1| ribosomal protein L27a [Homo sapiens]
            >gi|1173017|sp|P46776|RL2A_HUMAN 60S RIBOSOMAL PROTEIN L27A
            >gi|1362930|pir||S55914 ribosomal protein L27a - human
            >gi|550017|gb|AAA85656.1| (U14968) ribosomal protein L27a [Homo
            sapiens] >gi|4760602|dbj|BAA77361.1| (AB020236) ribosomal protein
            L27A [Homo sapiens] >gi|1096940|prf||2113200C ribosomal protein
            L27a [Homo sapiens]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 518 (182.3 bits), Expect = 9.6e-49, P = 9.6e-49
 Identities = 97/148 (65%), Positives = 120/148 (81%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPG+FGKVGM++
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQ 441
             +H  RN+ + P +N+DKLW+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+
Sbjct:    61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGKGKLPK 119

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 -QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


 >gi|3122699|sp|O01358|RL2A_OSCBR  60S RIBOSOMAL PROTEIN L27A (RIBOSOMAL PROTEIN
            RPL-27) >gi|7440776|pir||T10266 ribosomal protein L27 - Oscheius
            brevesophaga >gi|1906642|gb|AAB71725.1| (U90830) ribosomal protein
            rpl-27 [Oscheius brevesophaga]
            Length = 145

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 118..139
   PFAM                 L15: Ribosomal protein L15               107..139
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..105
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..138
__________________


  Plus Strand HSPs:

 Score = 518 (182.3 bits), Expect = 9.6e-49, P = 9.6e-49
 Identities = 98/147 (66%), Positives = 113/147 (76%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPG+FGKVGMR 
Sbjct:     1 MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             FH  +N  Y P +N+D+LW+LVP+E K K S E KAP+ID  + GYFKVLGKG+LP+ QP
Sbjct:    61 FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAE-KAPVIDCVKAGYFKVLGKGLLPK-QP 118

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
             ++VKAK  S  AE KIK AGGA +L A
Sbjct:   119 LIVKAKFFSHEAENKIKAAGGACILVA 145


 >gi|4760604|dbj|BAA77362.1|  (AB020237) ribosomal protein L27A [Mus musculus]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 515 (181.3 bits), Expect = 2.0e-48, P = 2.0e-48
 Identities = 98/148 (66%), Positives = 119/148 (80%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQ 441
             +H  RN+ + P +N+DK W+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+
Sbjct:    61 YHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAK-NKTGVAPIIDVVRSGYYKVLGKGKLPK 119

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 -QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148


 >gi|6321335  ref|NP_011412.1| Ribosomal protein L28 (L29) (rp44) (YL24); Rpl28p
            [Saccharomyces cerevisiae] >gi|71192|pir||R6BY29 ribosomal protein
            L27a.e, cytosolic - yeast (Saccharomyces cerevisiae)
            >gi|3620|emb|CAA25729.1| (X01573) ribosomal protein L29
            [Saccharomyces cerevisiae] >gi|172484|gb|AAA35003.1| (K01162)
            ribosomal protein L29 [Saccharomyces cerevisiae]
            >gi|1256572|gb|AAA96382.1| (U30497) CYH2 gene product [Cloning
            vector pAS2-1] >gi|1322643|emb|CAA96808.1| (Z72625) ORF YGL103w
            [Saccharomyces cerevisiae]
            Length = 149

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100

  Plus Strand HSPs:

 Score = 514 (180.9 bits), Expect = 2.6e-48, P = 2.6e-48
 Identities = 97/149 (65%), Positives = 118/149 (79%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMRY
Sbjct:     1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDK----ASKENKAPLIDVTQFGYFKVLGKGVLP 438
             FHK +  F+ P+LN+DKLW+L+P++ +D+    ASKE  AP+ID    GY K+LGKG +P
Sbjct:    61 FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKET-APVIDTLAAGYGKILGKGRIP 119

Query:   439 QNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              N PV+VKA+ +SK+AE+KI+ AGG V L A
Sbjct:   120 -NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149


 >gi|132847|sp|P02406|RL28_YEAST  60S RIBOSOMAL PROTEIN L28 (L27A) (L29) (YL24)
            (RP62)
            Length = 149

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM00524: RIBOSOMALPROTEINL15             2..145
   Entrez               Domain: NUCLEAR LOCALIZATION SIGNAL.     7..13
   Entrez               Domain: NUCLEAR LOCALIZATION SIGNAL.     24..30
   PFAM                 L15: Ribosomal protein L15               110..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      110..141
__________________


  Plus Strand HSPs:

 Score = 512 (180.2 bits), Expect = 4.2e-48, P = 4.2e-48
 Identities = 97/149 (65%), Positives = 118/149 (79%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMRY
Sbjct:     1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDK----ASKENKAPLIDVTQFGYFKVLGKGVLP 438
             FHK +  F+ P+LN+DKLW+L+P++ +D+    ASKE  AP+ID    GY K+LGKG +P
Sbjct:    61 FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKET-APVIDTLAAGYGKILGKGRIP 119

Query:   439 QNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              N PV+VKA+ +SK+AE+KI+ AGG V L A
Sbjct:   120 -NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149


 >gi|132844|sp|P14115|RL2A_MOUSE  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|71191|pir||R5MS27 ribosomal protein L27a - mouse
            >gi|50321|emb|CAA28678.1| (X05021) URF (homologous to yeast L29
            ribosomal protein) [Mus musculus]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 6..20
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 26..35
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 100..116
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 120..141
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 509 (179.2 bits), Expect = 8.6e-48, P = 8.6e-48
 Identities = 97/148 (65%), Positives = 118/148 (79%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +R +K RK RGHVS GHGRIGKHRKHP GRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPSGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQ 441
             +H  RN+ + P +N+DK W+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+
Sbjct:    61 YHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAK-NKTGVAPIIDVVRSGYYKVLGKGKLPK 119

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 -QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148


 >gi|1350712|sp|P47830|RL2A_XENLA  60S RIBOSOMAL PROTEIN L27A (L22)
            >gi|530785|emb|CAA45531.1| (X64207) ribosomal protein L22 [Xenopus
            laevis] >gi|1095557|prf||2109274A ribosomal protein L22 [Xenopus
            laevis]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 6..20
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 26..35
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 100..116
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 120..141
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 509 (179.2 bits), Expect = 8.6e-48, P = 8.6e-48
 Identities = 94/148 (63%), Positives = 116/148 (78%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M ++ +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSKLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASK--ENKAPLIDVTQFGYFKVLGKGVLPQN 444
             +H  +N+ + P +N+DKLW+LV ++ +   +K  E  AP+ID    GY+KVLGKG LP+ 
Sbjct:    61 YHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK- 119

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148


 >gi|132845|sp|P08978|RL28_NEUCR  60S RIBOSOMAL PROTEIN L28 (L27A) (L29) (CRP1)
            >gi|71193|pir||R6NC7A ribosomal protein L27a.e - Neurospora crassa
            >gi|2991|emb|CAA29635.1| (X06320) put. ribosomal protein
            [Neurospora crassa] >gi|2993|emb|CAA31630.1| (X13254) put.
            ribosomal protein (AA 1-149) [Neurospora crassa]
            >gi|11595625|emb|CAC18245.1| (AL451018) ribosomal protein L27a.e
            [Neurospora crassa]
            Length = 149

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..146
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 502 (176.7 bits), Expect = 4.8e-47, P = 4.8e-47
 Identities = 95/149 (63%), Positives = 114/149 (76%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M TRF K RK RGHVSAG GR+GKHRKHPGGRG AGG HHHR   DKYHPG+FGKVGMR+
Sbjct:     1 MPTRFSKTRKHRGHVSAGKGRVGKHRKHPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDK---ASKENKAPLIDVTQFGYFKVLGKGVLPQ 441
             FH LRN  ++PILNI+KLW+LVP E ++K    +    AP+ID+   GY K+LGKG LPQ
Sbjct:    61 FHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ 120

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
               P+VV+A+ +S  AE+KIKEAGG + L A
Sbjct:   121 -VPIVVRARYVSAEAERKIKEAGGVIELVA 149


 >gi|2500272|sp|Q94530|RL2B_DROME  60S RIBOSOMAL PROTEIN L27A 2
            >gi|7440770|pir||JC6202 ribosomal protein L27a - fruit fly
            (Drosophila melanogaster) >gi|1575561|gb|AAC47472.1| (U66358)
            RpL27a [Drosophila melanogaster] >gi|1881581|gb|AAC47475.1|
            (U66357) ribosomal protein RpL27a [Drosophila melanogaster]
            Length = 149

Frame  1 hits (HSPs):     ________________________________________________
Annotated Domains:        ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 8..22
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 28..37
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     7..109
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 497 (175.0 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 96/143 (67%), Positives = 112/143 (78%), Frame = +1

Query:   106 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLR 285
             KK RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR FH  R
Sbjct:     7 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRR 66

Query:   286 NKFYSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVTQFGYFKVLGKGVLPQNQPVVV 459
                + P +N+DKLWSLV  E   +  KE   KAP+ID+ +FGY+K+LG+G LP  +PV+V
Sbjct:    67 QHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIV 125

Query:   460 KAKLISKIAEKKIKEAGGAVVLTA 531
             KAK  SK AE KIK+AGG  +L+A
Sbjct:   126 KAKYFSKKAEDKIKKAGGVCLLSA 149


 >gi|10727335|gb|AAF51006.2|  (AE003576) RpL27A gene product [Drosophila
            melanogaster]
            Length = 282

Frame  1 hits (HSPs):                           __________________________
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 282
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 497 (175.0 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 96/143 (67%), Positives = 112/143 (78%), Frame = +1

Query:   106 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLR 285
             KK RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR FH  R
Sbjct:   140 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRR 199

Query:   286 NKFYSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVTQFGYFKVLGKGVLPQNQPVVV 459
                + P +N+DKLWSLV  E   +  KE   KAP+ID+ +FGY+K+LG+G LP  +PV+V
Sbjct:   200 QHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIV 258

Query:   460 KAKLISKIAEKKIKEAGGAVVLTA 531
             KAK  SK AE KIK+AGG  +L+A
Sbjct:   259 KAKYFSKKAEDKIKKAGGVCLLSA 282


 >gi|730551|sp|P41092|RL2A_DROME  60S RIBOSOMAL PROTEIN L27A 1
            >gi|1071986|pir||JC2392 ribosomal protein L27a - fruit fly
            (Drosophila melanogaster) >gi|397852|emb|CAA52601.1| (X74484)
            ribosomal protein L27a [Drosophila melanogaster]
            Length = 149

Frame  1 hits (HSPs):     ________________________________________________
Annotated Domains:       ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 8..22
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 28..37
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   DOMO                 DM00524: RIBOSOMALPROTEINL15             4..146
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     7..109
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 496 (174.6 bits), Expect = 2.1e-46, P = 2.1e-46
 Identities = 96/143 (67%), Positives = 111/143 (77%), Frame = +1

Query:   106 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLR 285
             KK RK RGHVS GHGRIGKHRKHPGGRGN GGMHHHRI FDKYHPG+FGKVGMR FH  R
Sbjct:     7 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLRR 66

Query:   286 NKFYSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVTQFGYFKVLGKGVLPQNQPVVV 459
                + P +N+DKLWSLV  E   +  KE   KAP+ID+ +FGY+K+LG+G LP  +PV+V
Sbjct:    67 QHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIV 125

Query:   460 KAKLISKIAEKKIKEAGGAVVLTA 531
             KAK  SK AE KIKEAGG  +L+A
Sbjct:   126 KAKYFSKKAEDKIKEAGGVCLLSA 149


 >gi|5921511|emb|CAB56512.1|  (AJ249749) putative 60S ribosomal protein L27A
            [Mortierella alpina]
            Length = 147

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 496 (174.6 bits), Expect = 2.1e-46, P = 2.1e-46
 Identities = 94/147 (63%), Positives = 112/147 (76%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M TR   NRKKRGHVSAGHGR+GKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMR 
Sbjct:     1 MPTRLHHNRKKRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRINMDKYHPGYFGKVGMRR 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKA-PLIDVTQFGYFKVLGKGVLPQNQ 447
             FH  RN  + PI+N+D LWSLV ++ +  A+K  +  P+ID  + GY KVL KG LP+ Q
Sbjct:    61 FHLTRNGQHCPIVNLDTLWSLVSEQTRKNAAKNTEVVPVIDTLRAGYGKVLAKGRLPE-Q 119

Query:   448 PVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             PV+VKA+ +S+ AE+KIK  GGAV L A
Sbjct:   120 PVIVKARYVSRAAEQKIKAVGGAVQLVA 147


 >gi|2500274|sp|P78987|RL2A_ERYGR  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|1865792|emb|CAA72204.1| (Y11394) 60S ribosomal protein L29
            (L27A) [Blumeria graminis f. sp. hordei]
            Length = 149

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 487 (171.4 bits), Expect = 1.9e-45, P = 1.9e-45
 Identities = 91/149 (61%), Positives = 111/149 (74%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M T   K RK RGHVSAGHGR+GKHRKHPGGRG AGG HHHR   DKYHPG+FGKVGMRY
Sbjct:     1 MPTHLSKTRKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKD---KASKENKAPLIDVTQFGYFKVLGKGVLPQ 441
             FHK  N F+ P+LN++KLWSL+P E ++    ++  +  P+ID+   GY KVLGKG +P+
Sbjct:    61 FHKQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK 120

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
               P+VV+A+  SK AE+KI EAGG V L A
Sbjct:   121 -VPLVVRARWFSKEAERKITEAGGVVELVA 149


 >gi|400993|sp|Q00454|RL2A_TETTH  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|1078807|pir||A56403 ribosomal protein L27a.e - Tetrahymena
            thermophila >gi|161842|gb|AAA30124.1| (M76718) rpL29 [Tetrahymena
            thermophila]
            Length = 149

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 29..38
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   Entrez               mutagenized site: M->K,E: CONFERS CYLOHE 40
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     2..109
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 483 (170.0 bits), Expect = 4.9e-45, P = 4.9e-45
 Identities = 94/149 (63%), Positives = 112/149 (75%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYHPGFFGKVGM 264
             M +  KK RK RGHVS GHGR+GKHRK    GGRG AGGMHHHRIL +K+HPG++GK+GM
Sbjct:     1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60

Query:   265 RYFHKLRNKFYSPILNIDKLWSLVPQEVKDK-ASKENKAPLIDVTQFGYFKVLGKGVLPQ 441
             R FH  +N  + P++NIDKLWSLV    + K A  + K P+IDVT+ G+FKVLGKG LP 
Sbjct:    61 RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP- 119

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             NQPVVVKAK  SK AE++I   GGA VLTA
Sbjct:   120 NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149


 >gi|1710529|sp|P36585|R28A_SCHPO  60S RIBOSOMAL PROTEIN L28-A (L27A) (L29)
            >gi|101072|pir||S25593 60s ribosomal protein l27a - fission yeast
            (Schizosaccharomyces pombe) >gi|2119130|pir||S60002 ribosomal
            protein L27a.e.2 - fission yeast (Schizosaccharomyces pombe)
            >gi|5057|emb|CAA40492.1| (X57207) ribosomal protein L29
            [Schizosaccharomyces pombe] >gi|1150623|emb|CAA56901.1| (X80929)
            rpgL29 [Schizosaccharomyces pombe] >gi|3859085|emb|CAA21962.1|
            (AL033406) 60s ribosomal protein L27a.2/L28A [Schizosaccharomyces
            pombe]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               110..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      110..141
__________________


  Plus Strand HSPs:

 Score = 475 (167.2 bits), Expect = 3.5e-44, P = 3.5e-44
 Identities = 90/148 (60%), Positives = 112/148 (75%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M T   K RK RGHVSAGHGRIGKHRKHPGGRG AGG+ H R  FDKYHPG+FGKVGMR 
Sbjct:     1 MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQN 444
             FH ++N  + P +N+D+LW+L+P E +DK   +N   AP+I+V Q GY KVLGKG LP+ 
Sbjct:    61 FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              PV+V+ + +S+ AE+KIK+AGG V L A
Sbjct:   121 -PVIVQTRYVSRRAEEKIKQAGGVVELIA 148


 >gi|12230515|sp|P57728|R28B_SCHPO  60S RIBOSOMAL PROTEIN L28-B
            >gi|2119131|pir||S60001 60s ribosomal protein ll28B 27a - fission
            yeast  (Schizosaccharomyces pombe) >gi|547474|emb|CAA85731.1|
            (Z37501) Rpl29p [Schizosaccharomyces pombe]
            >gi|4176528|emb|CAA22884.1| (AL035263) 60s ribosomal protein ll28B
            27a [Schizosaccharomyces pombe]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 470 (165.4 bits), Expect = 1.2e-43, P = 1.2e-43
 Identities = 89/148 (60%), Positives = 111/148 (75%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M T   K RK RGHVSAGHGRIGKHRKHPGGRG AGG+ H R  FDKYHPG+FGKVGMR 
Sbjct:     1 MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQN 444
             FH ++N  + P +N+D+LW+LVP E ++K   +N   AP+I+V Q GY KVLGKG LP  
Sbjct:    61 FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              PV+++ + +S+ AE+KIK+AGG V L A
Sbjct:   121 -PVIIQTRYVSRRAEEKIKQAGGVVELIA 148


 >gi|540075|gb|AAA73459.1|  (U13207) large subunit ribosomal protein 29 [Euplotes
            crassus] >gi|1093613|prf||2104279A ribosomal protein L29 [Euplotes
            crassus]
            Length = 147

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 468 (164.7 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 91/146 (62%), Positives = 111/146 (76%), Frame = +1

Query:    97 TRFKKN-RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYF 273
             T  K+N RK RGHVS GHGR+GKHRKHPGGRG AG  HHHRI   KYHPG  GK GMR+F
Sbjct:     2 THSKRNTRKLRGHVSHGHGRVGKHRKHPGGRGMAGPEHHHRINVFKYHPGHIGKHGMRHF 61

Query:   274 HKLRNKFYSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             H +RN++Y P +N+ KLWSLV +E + KA  + +K  LIDV + GY+KVLGKG+LP+  P
Sbjct:    62 HLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VP 120

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
             +VVKAKL +  AEK+IK+ GGA VL A
Sbjct:   121 LVVKAKLFTPTAEKRIKQVGGACVLRA 147


 >gi|1350705|sp|P48161|RL2A_EUPCR  60S RIBOSOMAL PROTEIN L27A (L29)
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 100..116
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 120..141
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..144
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 468 (164.7 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 91/146 (62%), Positives = 111/146 (76%), Frame = +1

Query:    97 TRFKKN-RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYF 273
             T  K+N RK RGHVS GHGR+GKHRKHPGGRG AG  HHHRI   KYHPG  GK GMR+F
Sbjct:     2 THSKRNTRKLRGHVSHGHGRVGKHRKHPGGRGMAGPEHHHRINVFKYHPGHIGKHGMRHF 61

Query:   274 HKLRNKFYSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             H +RN++Y P +N+ KLWSLV +E + KA  + +K  LIDV + GY+KVLGKG+LP+  P
Sbjct:    62 HLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VP 120

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
             +VVKAKL +  AEK+IK+ GGA VL A
Sbjct:   121 LVVKAKLFTPTAEKRIKQVGGACVLRA 147


 >gi|161844|gb|AAA30125.1|  (M76719) rpL29 [Tetrahymena thermophila]
            Length = 149

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100

  Plus Strand HSPs:

 Score = 463 (163.0 bits), Expect = 6.5e-43, P = 6.5e-43
 Identities = 90/149 (60%), Positives = 109/149 (73%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYHPGFFGKVGM 264
             M +  +K RK RGHVS GHGR+GKHRK    GGRG AGGMHHHRIL +K+HPG++GK+GM
Sbjct:     1 MVSHLRKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60

Query:   265 RYFHKLRNKFYSPILNIDKLWSLVPQEVKDK-ASKENKAPLIDVTQFGYFKVLGKGVLPQ 441
             R FH  +N  + P++NIDKLW       + K A  + K P+IDVT+ G+FKVLGKG LP 
Sbjct:    61 RTFHLKKNPLHCPVVNIDKLWRKETDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP- 119

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             NQPVVVKAK  SK AE++I   GGA VLTA
Sbjct:   120 NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149


 >gi|2500273|sp|Q27021|RL2A_TENMO  60S RIBOSOMAL PROTEIN L27A
            >gi|1431618|emb|CAA67590.1| (X99204) ribosomal protein L27a
            [Tenebrio molitor]
            Length = 148

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 101..117
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 121..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD064595: RL2A_TENMO                     110..147
__________________


  Plus Strand HSPs:

 Score = 463 (163.0 bits), Expect = 6.5e-43, P = 6.5e-43
 Identities = 86/148 (58%), Positives = 111/148 (75%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M+T  KK RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGK+GMR 
Sbjct:     1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRN 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASK--ENKAPLIDVTQFGYFKVLGKGVLPQN 444
             +H  RN  ++P +N+DKLW+LV ++ + K     E KAP+ID+ + GY+K+LGKG    N
Sbjct:    61 YHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTN 120

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
               ++  +  ++++ E KIK  GGA VL+A
Sbjct:   121 LSLLKPSFSLNRL-EDKIKAVGGACVLSA 148


 >gi|1263104|emb|CAA65760.1|  (X97045) ORF [Bos taurus]
            Length = 165

Frame  1 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |              |               |              |    | 165
                       0             50             100            150

  Plus Strand HSPs:

 Score = 446 (157.0 bits), Expect = 4.1e-41, P = 4.1e-41
 Identities = 90/151 (59%), Positives = 113/151 (74%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRI-----GKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGK 255
             M +R +K RK RGHVS GHG I      +  + PG RGNAGGMHHHRI FDKYHPG+FGK
Sbjct:     3 MPSRLRKTRKLRGHVSHGHGAIVMCSCRQTPETPGSRGNAGGMHHHRINFDKYHPGYFGK 62

Query:   256 VGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGK 426
             VGMR++H  RN+ + P +N+DKLW+LV ++ +  A+K NK   AP+IDV + GY+KVLGK
Sbjct:    63 VGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGK 121

Query:   427 GVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVL 525
             G LP+ QPV+VKAK  S+ AE+KIK  GGA VL
Sbjct:   122 GKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVL 153


 >gi|11136707|gb|AAG31288.1|AC009805_1  (AC009805) Ribosomal protein L27a copy 1
            [Leishmania major]
            Length = 159

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 433 (152.4 bits), Expect = 9.8e-40, P = 9.8e-40
 Identities = 81/161 (50%), Positives = 111/161 (68%), Frame = +1

Query:    49 STHAGGGD*SREEKMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFD 228
             +TH        + +M TRFKK R +RG    G+GR+GKHRKH  GRGNAGGMHHHRI FD
Sbjct:     1 NTHYRDHSTQLDYEMPTRFKKCRHQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFD 60

Query:   229 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGY 408
             KYHPG+FGK+GM ++H+ +N  + P +N++ L  L+  E   KA+K    P++D+   GY
Sbjct:    61 KYHPGYFGKLGMDHYHRKKNPMWKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSSGY 120

Query:   409 FKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              K+LG G +    P +VKA+ +SK+A+KKI++AGGAVVL A
Sbjct:   121 AKLLGNGHI--QVPCIVKARYVSKLADKKIRKAGGAVVLQA 159


 >gi|10305197|gb|AAG16278.1|AC016024_1  (AC016024) Ribosomal protein L27a copy 1
            [Leishmania major]
            Length = 219

Frame  1 hits (HSPs):                   __________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 1.2e-39, P = 1.2e-39
 Identities = 79/148 (53%), Positives = 107/148 (72%), Frame = +1

Query:    88 KMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMR 267
             +M TRFKK R +RG    G+GR+GKHRKH  GRGNAGGMHHHRI FDKYHPG+FGK+GM 
Sbjct:    74 EMPTRFKKCRHQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFDKYHPGYFGKLGMD 133

Query:   268 YFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQ 447
             ++H+ +N  + P +N++ L  L+  E   KA+K    P++D+   GY K+LG G +    
Sbjct:   134 HYHRKKNPMWKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSSGYAKLLGNGHI--QV 191

Query:   448 PVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             P +VKA+ +SK+A+KKI++AGGAVVL A
Sbjct:   192 PCIVKARYVSKLADKKIRKAGGAVVLQA 219


 >gi|10305199|gb|AAG16280.1|AC016024_3  (AC016024) ribosomal protein L27a copy 2
            [Leishmania major]
            Length = 145

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 79/147 (53%), Positives = 106/147 (72%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M TRFKK R +RG    G+GR+GKHRKH  GRGNAGGMHHHRI FDKYHPG+FGK+GM +
Sbjct:     1 MPTRFKKCRHQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFDKYHPGYFGKLGMDH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             +H+ +N  + P +N++ L  L+  E   KA+K    P++D+   GY K+LG G +    P
Sbjct:    61 YHRKKNPMWKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSSGYAKLLGNGHI--QVP 118

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
              +VKA+ +SK+A+KKI++AGGAVVL A
Sbjct:   119 CIVKARYVSKLADKKIRKAGGAVVLQA 145


 >gi|6094046|sp|O15883|RL2A_TRYBB  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|2232029|gb|AAB62182.1| (U96757) ribosomal protein L27a
            [Trypanosoma brucei brucei]
            Length = 145

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               108..139
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..105
   PRODOM               PD172443: RL2A_TRYBB                     107..144
__________________


  Plus Strand HSPs:

 Score = 430 (151.4 bits), Expect = 2.0e-39, P = 2.0e-39
 Identities = 81/147 (55%), Positives = 104/147 (70%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M TRFKK R +RG    G+GR+GKHRKHP GRGNAGG HHHRI F KYHPG+FGK GM +
Sbjct:     1 MPTRFKKTRHQRGSTFCGYGRVGKHRKHPSGRGNAGGEHHHRINFRKYHPGYFGKCGMNH 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             +HK +N  + P +N+D L  L+ ++   KA K    P+ID+   GY K+LG G L    P
Sbjct:    61 YHKKKNTTWKPTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAP 118

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLTA 531
              +VKA+ +SK+A+KKI++AGGAVVL A
Sbjct:   119 CIVKARWVSKLADKKIRKAGGAVVLQA 145


 >gi|12584634|emb|CAC27402.1|  (AJ305223) 60S ribosomal protein L27A or L22
            [Platichthys flesus]
            Length = 125

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 125
                       0                  50                 100

  Plus Strand HSPs:

 Score = 429 (151.0 bits), Expect = 2.6e-39, P = 2.6e-39
 Identities = 79/125 (63%), Positives = 99/125 (79%), Frame = +1

Query:   160 KHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVP 339
             KHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR++H  RN  + P +N+DKLW+LV 
Sbjct:     1 KHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNTTHCPTINLDKLWTLVS 60

Query:   340 QEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGG 513
             ++ +    KE++  AP+ID  + GY+K+LGKG LP+ QPV+VKAK  S+ AE+KIK  GG
Sbjct:    61 EQTRLNYGKESEGPAPIIDAVRAGYYKILGKGKLPK-QPVIVKAKFFSRRAEEKIKAVGG 119

Query:   514 AVVLTA 531
             A VL A
Sbjct:   120 ACVLMA 125


 >gi|10178306|emb|CAC08391.1|  (AL121886) dJ1028D15.2 (similar to RPL27A
            (ribosomal protein L27a)) [Homo sapiens]
            Length = 142

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 142
                       0                50              100

  Plus Strand HSPs:

 Score = 415 (146.1 bits), Expect = 7.9e-38, P = 7.9e-38
 Identities = 90/147 (61%), Positives = 109/147 (74%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M +R +K +K RGHVS GHGRIGK +KHP G  NAGGMHHHRI F+KY+PG+FGKVGMRY
Sbjct:     1 MPSRLRKTQKLRGHVSHGHGRIGKLQKHPRGHSNAGGMHHHRINFNKYYPGYFGKVGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQ 441
             + K RN+  S    +DKLW+LV ++ +  A+K NK   APLIDV Q GY+KVLGK  LP+
Sbjct:    61 YLK-RNQTVS----LDKLWTLVSEQTQVNAAK-NKPGAAPLIDVVQSGYYKVLGKEKLPK 114

Query:   442 NQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
              QPV+VKAK  S+ AEK IK   G  VL A
Sbjct:   115 -QPVIVKAKFFSRRAEK-IKGVKGTCVLVA 142


 >gi|12580751|emb|CAC27069.1|  (AJ010592) 60S ribosomal protein L27A [Guillardia
            theta]
            Length = 144

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 393 (138.3 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 73/146 (50%), Positives = 102/146 (69%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             M T  +++RKKRGHVS+GHGR+GKHRKHPGGRGN+GG HHH+I F+KYH   FGK GMRY
Sbjct:     1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQP 450
             + KL+   ++  +N+DK+   + + +      +N +   D++  G  KVLG+G + Q +P
Sbjct:    61 YRKLKQNNFNKSINLDKISDKLVKNMH--LHTKNSSDSFDLSLIGMSKVLGRGRMVQ-KP 117

Query:   451 VVVKAKLISKIAEKKIKEAGGAVVLT 528
              V+KA   SK+A KKIK+AGG  +LT
Sbjct:   118 FVIKANSFSKVAVKKIKKAGGYCILT 143


 >gi|7674267|sp|O62581|RL2A_ENCCU  60S RIBOSOMAL PROTEIN L27A
            >gi|3025760|gb|AAC68578.1| (AF054829) ribosomal protein L27a
            [Encephalitozoon cuniculi]
            Length = 147

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 355 (125.0 bits), Expect = 1.8e-31, P = 1.8e-31
 Identities = 67/146 (45%), Positives = 96/146 (65%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             MT R KK RK RGHVS G+GR+GKHRKH GGRG AGG  H +  F ++HP + GK GMR 
Sbjct:     1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQEVK-DKASKENKAPLIDVTQFGYFKVLGKGVLPQNQ 447
             +H+  N  Y+  ++  +LW ++P+E + D      K P+IDV +FGY  V+G G L   +
Sbjct:    61 YHRKENSDYARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVG-GKLSLER 119

Query:   448 PVVVKAKLISKIAEKKIKEAGGAVVLT 528
             P+VVKA+  +  A+++I + GG  ++T
Sbjct:   120 PIVVKARYFTPSAKEEITKVGGKWIIT 146


 >gi|2982333|gb|AAC32151.1|  (AF051252) probable 60S ribosomal protein L27a
            [Picea mariana]
            Length = 86

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 86
                       0          20         40          60         80

  Plus Strand HSPs:

 Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 66/88 (75%), Positives = 80/88 (90%), Frame = +1

Query:   268 YFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQ 447
             +FHKLRN ++ PI+NI+KLWSLVP++VK KA+ ++  PLIDVTQFGYFKVLGKG LP +Q
Sbjct:     1 HFHKLRNHYHCPIVNIEKLWSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP-SQ 58

Query:   448 PVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             P+VVKAKLISK+AEKKIKEAGGAV+LTA
Sbjct:    59 PIVVKAKLISKLAEKKIKEAGGAVMLTA 86


 >gi|4104078|gb|AAD01931.1|  (AF031466) ribosomal protein rpl-27 [Entamoeba
            dispar]
            Length = 107

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |        |         |        |        |         |   | 107
                       0       20        40       60       80       100

  Plus Strand HSPs:

 Score = 288 (101.4 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 55/106 (51%), Positives = 72/106 (67%), Frame = +1

Query:   106 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLR 285
             ++ R++RGHVS G+GRIGKHRK  GGRGNAGG HH +  F  +HP  FGK GMR FH   
Sbjct:     1 RQTRRRRGHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPENFGKHGMRVFHLKA 60

Query:   286 NKFYSPILNIDKLWSLVPQEVKDK---ASKENKAPLID-VTQFGYF 411
             NK+Y P +N+D LWSLV ++V+ +   A    + P+ID VT +  F
Sbjct:    61 NKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVTWYSRF 106


 >gi|8698743|gb|AAF78501.1|AC012187_21  (AC012187) Contains similarity to 60S
            ribosomal protein L27a from Panax ginseng gb|AB042856 and contains
            a ribosomal protein L15 PF|00256 domain. [Arabidopsis thaliana]
            Length = 104

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 104
                       0        20       40        60       80       100

  Plus Strand HSPs:

 Score = 146 (51.4 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
 Identities = 31/42 (73%), Positives = 34/42 (80%), Frame = +1

Query:   415 VLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA*FY 540
             VLGKG LP+N+PVVVKAKL+S   EKKIKEAG AVVLT   Y
Sbjct:    63 VLGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLTFLLY 104

 Score = 146 (51.4 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
 Identities = 30/50 (60%), Positives = 34/50 (68%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAG-GMHHHRILFDKYH 237
             MTT  KK R  R HVS GHGR GKHRK PG RGNAG GM +   L +K++
Sbjct:     1 MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFY 50

 Score = 132 (46.5 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 40/90 (44%), Positives = 49/90 (54%), Frame = +1

Query:   166 RKHPG-GRGNAGGMHHHRILFDKYHPGFFGK--VGMRYFHKLRNKFYSPILNIDKLWSLV 336
             R+H   G G  G    HR L     PG  G   VGMRYFHKLRNKFY  I+N+DKLWS+V
Sbjct:    12 REHVSVGHGRFG---KHRKL-----PGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63

Query:   337 PQE--VKDKASKENKAPLIDVTQFGYFKVLGKGVL 435
               +  + +      KA L+  T     K  G  V+
Sbjct:    64 LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVV 98


 >gi|2996179|gb|AAC32179.1|  (AF051765) putative 60S ribosomal protein L27a
            [Picea mariana]
            Length = 71

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 71
                       0            20            40            60

  Plus Strand HSPs:

 Score = 277 (97.5 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 57/73 (78%), Positives = 67/73 (91%), Frame = +1

Query:   313 IDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEK 492
             I+KLWSLVP++VK KA+ ++  PLIDVTQFGYFKVLGKG LP +QP+VVKAKLISK+AEK
Sbjct:     1 IEKLWSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP-SQPIVVKAKLISKLAEK 58

Query:   493 KIKEAGGAVVLTA 531
             KIKEAGGAV+LTA
Sbjct:    59 KIKEAGGAVMLTA 71


 >gi|2996177|gb|AAC32178.1|  (AF051764) putative 60S ribosomal protein L27a
            [Picea mariana]
            Length = 67

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |              |              |              |     | 67
                       0             20             40             60

  Plus Strand HSPs:

 Score = 262 (92.2 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 54/69 (78%), Positives = 63/69 (91%), Frame = +1

Query:   325 WSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKE 504
             WSLVP++VK KA+ ++  PLIDVTQFGYFKVLGKG LP +QP+VVKAKLISK+AEKKIKE
Sbjct:     1 WSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP-SQPIVVKAKLISKLAEKKIKE 58

Query:   505 AGGAVVLTA 531
             AGGAV+LTA
Sbjct:    59 AGGAVMLTA 67


 >gi|3914721|sp|Q29333|RL2A_PIG  60S RIBOSOMAL PROTEIN L27A
            Length = 54

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                  |             | 54
                       0                20                 40

  Plus Strand HSPs:

 Score = 248 (87.3 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 43/54 (79%), Positives = 46/54 (85%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFG 252
             M +R +  RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYH G+FG
Sbjct:     1 MPSRLRXTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHXGYFG 54


 >gi|11436069  ref|XP_006092.1| ribosomal protein L27a [Homo sapiens]
            Length = 91

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 91
                       0         20         40         60         80

  Plus Strand HSPs:

 Score = 243 (85.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 50/91 (54%), Positives = 69/91 (75%), Frame = +1

Query:   262 MRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGV 432
             M+++H  RN+ + P +N+DKLW+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG 
Sbjct:     1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGKGK 59

Query:   433 LPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:    60 LPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 91


 >gi|1710492|sp|P54047|RL15_METJA  50S RIBOSOMAL PROTEIN L15P
            >gi|2119132|pir||E64359 ribosomal protein L15 - Methanococcus
            jannaschii >gi|1591179|gb|AAB98466.1| (U67497) LSU ribosomal
            protein L15P (rplO) [Methanococcus jannaschii]
            Length = 143

Frame  1 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 29..38
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 117..138
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..141
   PFAM                 L15: Ribosomal protein L15               107..138
   PRODOM               PD064572: RL15(6)                        6..102
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..137
__________________


  Plus Strand HSPs:

 Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 55/144 (38%), Positives = 79/144 (54%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGM 264
             M  + KK +K RG  + G G   K R   + GGRG AGG  H      KY P +FGK G 
Sbjct:     1 MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGF 60

Query:   265 RYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQN 444
             +    L  +  +  +N+ +L  +V +   DK  KE+   ++DV + GY KVLGKG +   
Sbjct:    61 KRHPSLVKRLET--INVGELEEIVLKN-PDKFEKEDDKFVVDVIELGYEKVLGKGKV--T 115

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVV 522
              P++VKA  +S+ A +KI+  GG VV
Sbjct:   116 IPMIVKAVEVSEKAREKIEAVGGEVV 141


 >gi|3122688|sp|O26133|RL15_METTH  50S RIBOSOMAL PROTEIN L15P
            >gi|7440772|pir||C69131 ribosomal protein L15 - Methanobacterium
            thermoautotrophicum (strain Delta H) >gi|2621062|gb|AAB84534.1|
            (AE000796) ribosomal protein L27a (E.coli L15) [Methanothermobacter
            thermautotrophicus]
            Length = 146

Frame  1 hits (HSPs):   ________________________________________________  
Annotated Domains:        ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               109..140
   PRODOM               PD064572: RL15(6)                        7..104
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..139
__________________


  Plus Strand HSPs:

 Score = 193 (67.9 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 53/141 (37%), Positives = 78/141 (55%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGM 264
             M  + +K  + RG  + G G   K R   H GGRG AGG  HH     KY P  FGK G 
Sbjct:     1 MIRKRRKITRMRGSRTVGGGCSKKRRGAGHRGGRGQAGGHKHHWTWIVKYDPKHFGKYGF 60

Query:   265 RYFHKLRNKFYSPILNIDKLWSLVPQEV-KDKASKENKAPLIDVTQFGYFKVLGKGVLPQ 441
             +   KL  +  +  +N+  L  ++P+ + +  AS+E+   ++DV   G+ KVLG G +  
Sbjct:    61 KRPQKLIKRLET--VNLAYLDEMIPELLERGVASEEDGMVVLDVRDLGFEKVLGSGRI-- 116

Query:   442 NQPVVVKAKLISKIAEKKIKEAGG 513
              +PV +KA   S+ A +KI+EAGG
Sbjct:   117 TRPVHLKAYEFSRSATEKIEEAGG 140


 >gi|132684|sp|P14032|RL15_METVA  50S RIBOSOMAL PROTEIN L15P
            >gi|71194|pir||R6MX15 ribosomal protein L15 - Methanococcus
            vannielii >gi|44770|emb|CAA34702.1| (X16720) rpL15 (AA 1-143)
            [Methanococcus vannielii]
            Length = 143

Frame  1 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 29..38
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 117..138
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..141
   PFAM                 L15: Ribosomal protein L15               107..138
   PRODOM               PD064572: RL15(6)                        5..102
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..137
__________________


  Plus Strand HSPs:

 Score = 192 (67.6 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 52/144 (36%), Positives = 80/144 (55%), Frame = +1

Query:    91 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGM 264
             M  + KK  K+RG  + G+G   KHR   H GGRGNAG   H  +   K++P +FGK G 
Sbjct:     1 MIRKSKKITKQRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPEYFGKYGF 60

Query:   265 RYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQN 444
                  L  K  +  +N+ +L   V  + KD    ++   +++ T+ G+ K+LGKG +  +
Sbjct:    61 NRNPCLIKKLET--INVGELEEYV-LKYKDAFKLKDGKVVVNATEIGFEKILGKGRI--S 115

Query:   445 QPVVVKAKLISKIAEKKIKEAGGAVV 522
               +VVKA   S+ A++KI+ AGG  V
Sbjct:   116 TAMVVKAVEFSEGAKEKIEAAGGEFV 141


 >gi|1881382|dbj|BAA19416.1|  (AB001584) ribosomal protein L27a [Solanum
            melongena]
            Length = 58

Frame  1 hits (HSPs):            _________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40

  Plus Strand HSPs:

 Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 37/47 (78%), Positives = 43/47 (91%), Frame = +1

Query:   391 VTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 531
             VTQ+GY KVLGKGVLP+N+ VVVKAKL+SK AE+KIK+ GGAVVLTA
Sbjct:    12 VTQYGYLKVLGKGVLPENKAVVVKAKLVSKNAERKIKDGGGAVVLTA 58


 >gi|6685880|sp|Q9YF98|RL15_AERPE  50S RIBOSOMAL PROTEIN L15P
            >gi|7440775|pir||F72725 probable ribosomal protein L15 APE0343 -
            Aeropyrum pernix  (strain K1) >gi|5103982|dbj|BAA79298.1|
            (AP000059) 158aa long hypothetical 50S ribosomal protein L15
            [Aeropyrum pernix]
            Length = 158

Frame  1 hits (HSPs):    ______________________________________________   
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 53/144 (36%), Positives = 81/144 (56%), Frame = +1

Query:   100 RFKKNRKKRGHV-SAGHGRIGKHRKH--PGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 270
             R KK+RK RG   +   GRIG+HRK    GG G AG   H      KY P ++GK G   
Sbjct:     5 RRKKSRKLRGRTRTMSWGRIGQHRKSGSKGGYGAAGLGKHEWTWTIKYAPTWYGKKGFNP 64

Query:   271 FHKLRNKFYSPILNIDKLWSLVPQ-EVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQ 447
               ++R       +N+ +L  +    E + KA KE+   ++++ + G  K+LG+G + +  
Sbjct:    65 -PRIRAGLEVTTINVGQLDEIAALLEAQGKAEKEDGKIVVNLEKLGIHKLLGEGRVAR-- 121

Query:   448 PVVVKAKLISKIAEKKIKEAGGAVVLT 528
             P+ V   L S++A KKI+EAGG V++T
Sbjct:   122 PLKVITPLASELAIKKIEEAGGEVIVT 148


 >gi|3914680|sp|O05643|RL15_SULAC  50S RIBOSOMAL PROTEIN L15P
            >gi|2052268|emb|CAA69099.1| (Y07778) ribosomal protein L15
            [Sulfolobus acidocaldarius]
            Length = 144

Frame  1 hits (HSPs):     _______________________________________________ 
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100
__________________

Annotated Domains:
   PRODOM               PD064572: RL15(6)                        7..96
   PRODOM               PD065361: RL15_SULAC                     98..143
__________________


  Plus Strand HSPs:

 Score = 182 (64.1 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 47/142 (33%), Positives = 79/142 (55%), Frame = +1

Query:   106 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFD-KYHPGFFGKVGMRYFHKL 282
             KK+RK RG+ + G G  G+HR      G   GMH  +  +  K+  G++GK G   F   
Sbjct:     7 KKSRKYRGYRTHGWGTKGQHRDRGAQGGRQIGMHKEKWSWTVKFGEGWYGKHG---FRNP 63

Query:   283 RNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVK 462
              +K  + I  + KL   +  + K K  +EN   ++D+ ++GY K+LG G L    P+V+K
Sbjct:    64 TSKLVNAI-GLRKLQEYIDND-KIKIEEENGKKVVDLAKYGYDKLLGGGNL--RLPLVIK 119

Query:   463 AKLISKIAEKKIKEAGGAVVLTA 531
                 ++ A++++KE GG ++LT+
Sbjct:   120 VAKATEKAKERVKEIGGEIILTS 142


 >gi|7021396|gb|AAF35324.1|  (AF222926) ribosomal protein L27a [Penaeus monodon]
            Length = 49

Frame  1 hits (HSPs):            _______________________________________  
                        __________________________________________________
Database sequence:     |                   |                   |          | 49
                       0                  20                  40

  Plus Strand HSPs:

 Score = 182 (64.1 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 33/38 (86%), Positives = 33/38 (86%), Frame = +1

Query:   106 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI 219
             KK RK RGHVS GHGRIGKHRKHPGGRG AGGMH HRI
Sbjct:    10 KKTRKLRGHVSHGHGRIGKHRKHPGGRGYAGGMHDHRI 47


WARNING:  HSPs involving 93 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.99

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.337   0.148   0.516  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.333   0.137   0.406  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.330   0.148   0.469  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.323   0.139   0.389  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.336   0.147   0.524  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.352   0.152   0.566  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      191       188       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      191       189       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +1      0      192       189       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -1      0      192       189       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      191       189       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      191       188       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  143
  No. of states in DFA:  586 (58 KB)
  Total size of DFA:  195 KB (256 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  222.64u 1.22s 223.86t  Elapsed: 00:00:47
  Total cpu time:  222.67u 1.30s 223.97t  Elapsed: 00:00:47
  Start:  Wed Jan 23 10:26:00 2002   End:  Wed Jan 23 10:26:47 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000