R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7486304|pir||T04535 hypothetical protein F28J12.50 - Arabidopsis thaliana
>gi|2832644|emb|CAA16719.1| (AL021710) teosinte branched1 - like
protein [Arabidopsis thaliana] >gi|7268632|emb|CAB78841.1|
(AL161548) teosinte branched1-like protein [Arabidopsis thaliana]
Length = 360
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 360
0 150 300
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 22/43 (51%), Positives = 25/43 (58%), Frame = +1
Query: 232 KGVGGGGGSDASTNHFHQSSWHY-SSKIXRVSXASGGKXRHXKV 360
K G D N+ S WH+ SS+I RVS ASGGK RH KV
Sbjct: 2 KNNNNGDVVDNEVNN-RLSRWHHNSSRIIRVSRASGGKDRHSKV 44
Score = 83 (29.2 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 19/37 (51%), Positives = 26/37 (70%), Frame = +2
Query: 356 KLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
K++TSKG R+ V LSV+TA+ FYD + LG P+K
Sbjct: 43 KVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSK 79
>gi|12320852|gb|AAG50562.1|AC073506_4 (AC073506) hypothetical protein
[Arabidopsis thaliana]
Length = 324
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 324
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/37 (54%), Positives = 26/37 (70%), Frame = +2
Query: 356 KLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
K++TSKGLR+ + LSV TAI FYD + LG P+K
Sbjct: 56 KVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSK 92
Score = 73 (25.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/25 (64%), Positives = 19/25 (76%), Frame = +1
Query: 289 SWHY-SSKIXRVSXASGGKXRHXKV 360
+W+ SS+I RVS ASGGK RH KV
Sbjct: 33 NWNNPSSRIIRVSRASGGKDRHSKV 57
>gi|7294399|gb|AAF49745.1| (AE003535) CG13482 gene product [Drosophila
melanogaster]
Length = 102
Frame -3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
Minus Strand HSPs:
Score = 104 (36.6 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/75 (34%), Positives = 33/75 (44%), Frame = -3
Query: 283 GGSGLC*HHFHHHHQHLXFLGHPLLPPLGIGHYSYHFQL*GTYMXESHPPPYHSHAFFPS 104
GG G HH HHHH H PP + H+ +H G M PPP+H H + P
Sbjct: 20 GGGG---HHHHHHHPPPPV--HHYHPPPPVHHHHHH----GPPMHHHGPPPHHHHHYGPP 70
Query: 103 LTP-HLVFFSYPHGKY 59
P H + HG +
Sbjct: 71 PPPPHYDHHHHHHGSH 86
Score = 70 (24.6 bits), Expect = 3.6, P = 0.97
Identities = 16/45 (35%), Positives = 22/45 (48%), Frame = -3
Query: 253 HHHHQHLXFLGHPLLPPLGIGHYSYHFQL*GTYMXESHPPPYHSH 119
HHHH + G P PP HY +H G++ + H P+H H
Sbjct: 62 HHHHHY----GPPPPPP----HYDHHHHHHGSHF-DHHHGPHHGH 97
>gi|3328126|gb|AAC26786.1| (AF072691) putative basic helix-loop-helix DNA
binding protein TCP2 [Arabidopsis thaliana]
Length = 335
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 335
0 150 300
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/37 (51%), Positives = 26/37 (70%), Frame = +2
Query: 356 KLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
K++TSKG R+ V LSV+TA+ FYD + LG P+K
Sbjct: 20 KVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSK 56
Score = 71 (25.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 15/20 (75%), Positives = 16/20 (80%), Frame = +1
Query: 301 SSKIXRVSXASGGKXRHXKV 360
SS+I RVS ASGGK RH KV
Sbjct: 2 SSRIIRVSRASGGKDRHSKV 21
>gi|11358650|pir||T50492 probable helix-loop-helix DNA binding protein -
Arabidopsis thaliana >gi|8346544|emb|CAB93708.1| (AL357612)
putative helix-loop-helix DNA binding protein [Arabidopsis
thaliana]
Length = 242
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 242
0 50 100 150 200
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.011, Sum P(2) = 0.011
Identities = 18/38 (47%), Positives = 25/38 (65%), Frame = +2
Query: 356 KLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNKL 466
K+ T +GLR+ + LSV TAI YD + LGL P+K+
Sbjct: 39 KVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKV 76
Score = 60 (21.1 bits), Expect = 0.011, Sum P(2) = 0.011
Identities = 13/23 (56%), Positives = 16/23 (69%), Frame = +1
Query: 292 WHYSSKIXRVSXASGGKXRHXKV 360
W+ + +I RVS A GGK RH KV
Sbjct: 19 WN-NPRIVRVSRAFGGKDRHSKV 40
>gi|7488996|pir||T07030 extensin - tomato (fragment) >gi|575950|emb|CAA86660.1|
(Z46675) extensin [Lycopersicon esculentum]
Length = 42
Frame -2 hits (HSPs): ______________________________
Frame -3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 42
0 20 40
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.083, Sum P(2) = 0.079
Identities = 11/26 (42%), Positives = 14/26 (53%), Frame = -2
Query: 251 PPPPTPFXLRSPSSSSSXYWSLLLPF 174
PPPPTP +SP + Y S P+
Sbjct: 6 PPPPTPIY-KSPPPPTPAYNSPPPPY 30
Score = 45 (15.8 bits), Expect = 0.083, Sum P(2) = 0.079
Identities = 7/11 (63%), Positives = 8/11 (72%), Frame = -3
Query: 157 YMXESHPPPYH 125
Y+ S PPPYH
Sbjct: 31 YLYTSPPPPYH 41
>gi|7499707|pir||T30119 hypothetical protein F22H10.2 - Caenorhabditis elegans
>gi|1572746|gb|AAB09100.1| (U70845) contains weak similarity to
B-type repeats found in plant dehydrins [Caenorhabditis elegans]
Length = 102
Frame -3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.18, P = 0.16
Identities = 19/48 (39%), Positives = 23/48 (47%), Frame = -3
Query: 262 HHFHHHHQHLXFLGHPLLPPLGIGHYSYHFQL*GTYMXESHPPPYHSH 119
HH HHHH L LGH L G GH+ +H G + H +H H
Sbjct: 61 HHHHHHHGLLHGLGHALT---G-GHHHHHHHG-GHHFGHHHH--HHGH 101
>gi|7504000|pir||T16435 hypothetical protein F53A9.2 - Caenorhabditis elegans
>gi|746553|gb|AAC46557.1| (U23523) histidine-rich [Caenorhabditis
elegans]
Length = 83
Frame -3 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Minus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.23, P = 0.21
Identities = 19/48 (39%), Positives = 23/48 (47%), Frame = -3
Query: 262 HHFHHHHQH--LXFLGHPLLPPLGIGHYSYHFQL*GTYMXESHPPPYHSH 119
HH HHHH H L LGH L GH+ +H G + H +H H
Sbjct: 42 HHGHHHHHHSFLHELGHALT-----GHHHHHH---GHHFGHHHHH-HHGH 82
>gi|7503998|pir||T16436 hypothetical protein F53A9.1 - Caenorhabditis elegans
>gi|746552|gb|AAC46556.1| (U23523) F53A9.1 gene product
[Caenorhabditis elegans]
Length = 77
Frame -3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.87, P = 0.58
Identities = 14/29 (48%), Positives = 17/29 (58%), Frame = -3
Query: 262 HHFHHHHQH--LXFLGHPLLPPLGIGHYSYH 176
HH HHHH H L LGH + GH+ +H
Sbjct: 43 HHGHHHHHHGFLHELGHAMT-----GHHHHH 68
>gi|1076601|pir||S49761 structural cell wall protein - tomato (fragment)
>gi|575952|emb|CAA86659.1| (Z46674) extensin [Lycopersicon
esculentum]
Length = 80
Frame -2 hits (HSPs): __________________
Frame -3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 51 (18.0 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 13/28 (46%), Positives = 15/28 (53%), Frame = -2
Query: 251 PPPPTPFXLRSPSSSSSXYWSLLLPF-PT 168
PPPPTP +SP S Y P+ PT
Sbjct: 21 PPPPTPVY-KSPPSPVKPYHPSPTPYHPT 48
Score = 46 (16.2 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 7/11 (63%), Positives = 8/11 (72%), Frame = -3
Query: 157 YMXESHPPPYH 125
Y+ S PPPYH
Sbjct: 69 YVSSSPPPPYH 79
>gi|11359668|pir||T48707 related to regulatory protein wetA [imported] -
Neurospora crassa >gi|11544665|emb|CAB88506.2| (AL353817) related
to regulatory protein wetA [Neurospora crassa]
Length = 963
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | 963
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 88 (31.0 bits), Expect = 3.2, P = 0.96
Identities = 20/55 (36%), Positives = 25/55 (45%), Frame = -3
Query: 256 FHHHHQHLXFLGHPLLPPLGIGHYSYHFQL*GTYMXESHPPPYHSHAFFPSLTPH 92
FHH H H +G+P +PPL H H G PPP+H H S + H
Sbjct: 756 FHHPH-HRGVMGYPPMPPLPAHHLQAHHGP-GASSLSPPPPPHHHHHPSKSFSLH 808
>gi|8777486|dbj|BAA97066.1| (AP000370) gene_id:K15M2.17~unknown protein
[Arabidopsis thaliana]
Length = 406
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 22/50 (44%), Positives = 28/50 (56%), Frame = +2
Query: 329 HLVAXTGT----XKLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
H+V TG K+ T+KG R+ V LS TAI FYD + LG P+K
Sbjct: 24 HIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSK 73
Score = 38 (13.4 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 6/15 (40%), Positives = 12/15 (80%), Frame = +1
Query: 460 QTVEWLIQLLKTTLN 504
+ V+WLI+ KT+++
Sbjct: 73 KAVDWLIKKAKTSID 87
>gi|737061|prf||1921322A polyserin [Homo sapiens]
Length = 115
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 3.7, P = 0.97
Identities = 22/65 (33%), Positives = 29/65 (44%), Frame = +1
Query: 178 GRSSDQYXEEEEEGDLRXKGVGGG---GGSDASTNHFHQSSWHYSSKIXRVSXASGGKXR 348
G S++ E E G + G GGG G S +S++ SS SS S +SGGK
Sbjct: 26 GSVSNRNMEREASGSGKGSGSGGGSSSGSSSSSSSSSSSSSSSSSSSSSSPSSSSGGKGS 85
Query: 349 HXKVD 363
D
Sbjct: 86 ETSSD 90
>gi|3746070|gb|AAC63845.1| (AC005311) unknown protein [Arabidopsis thaliana]
Length = 361
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 361
0 150 300
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 4.9, P = 0.99
Identities = 22/50 (44%), Positives = 28/50 (56%), Frame = +2
Query: 329 HLVAXTGT----XKLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
H++ TG K+ TSKG R+ V LS TAI FYD + LG P+K
Sbjct: 22 HIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 71
>gi|12722782 ref|XP_010700.1| small protein effector 1 of Cdc42 [Homo sapiens]
Length = 69
Frame -2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.7, P = 1.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Frame = -2
Query: 263 ASLPPPPPTPFXLRS-PSSSSSXYWSLLLPFP 171
+SLPP P P SS +W LLPFP
Sbjct: 35 SSLPPCPSPPSCWNELKQMSSRGWWGCLLPFP 66
>gi|9758388|dbj|BAB08875.1| (AB022212) AP2 domain transcription factor-like
[Arabidopsis thaliana]
Length = 248
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 6.2, P = 1.0
Identities = 20/75 (26%), Positives = 32/75 (42%), Frame = +1
Query: 190 DQYXEEEEEGDLRXKGVGGGGGSDASTNHFHQSSWHYSSKIXRVSXASGGKXRHXKVDDL 369
+QY + GD+ +GGG GS + H +S ++ S +SGG R + D
Sbjct: 175 NQYYHDASSGDMLSFNLGGGYGSGTGYSMSHDNS---TTTAATTSSSSGGSSRQQEEQDY 231
Query: 370 XRVKKXXGXALCDHS 414
R + + HS
Sbjct: 232 ARFWRFGDSSSSPHS 246
>gi|3243274|gb|AAC24010.1| (AF072134) TCP3 [Arabidopsis thaliana]
Length = 373
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 373
0 150 300
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 6.9, P = 1.0
Identities = 22/50 (44%), Positives = 28/50 (56%), Frame = +2
Query: 329 HLVAXTGT----XKLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
H+V TG K+ T+KG R+ V LS TAI FYD + LG P+K
Sbjct: 24 HIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSK 73
>gi|6689585|emb|CAB65515.1| (AJ243596) homeodomain transcription factor
[Xenopus laevis]
Length = 69
Frame -3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 7.2, P = 1.0
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = -3
Query: 262 HHFHHHHQH 236
HH HHHHQH
Sbjct: 25 HHHHHHHQH 33
>gi|7291971|gb|AAF47387.1| (AE003468) CG13885 gene product [Drosophila
melanogaster]
Length = 71
Frame -3 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 7.2, P = 1.0
Identities = 16/46 (34%), Positives = 19/46 (41%), Frame = -3
Query: 262 HHFHHHHQHLXFLGHPLLPPLGIGHYSYHFQL*GTYMXESHPP---PYH 125
H HHHH H HP P H+ H G + H P PY+
Sbjct: 26 HSHHHHHSH----SHPHPHPHSHPHHHPHLGTAGGMPMDLHVPQGFPYY 70
>gi|7769872|gb|AAF69550.1|AC008007_25 (AC008007) F12M16.13 [Arabidopsis
thaliana]
Length = 391
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 391
0 150 300
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 7.3, P = 1.0
Identities = 22/50 (44%), Positives = 28/50 (56%), Frame = +2
Query: 329 HLVAXTGT----XKLMTSKGLRNXXVXLSVTTAIXFYDFKI-LGLXXPNK 463
H+V TG K+ T+KG R+ V LS TAI FYD + LG P+K
Sbjct: 42 HIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSK 91
>gi|9632203 ref|NP_048922.1| a566L [Paramecium bursaria Chlorella virus 1]
>gi|7461701|pir||T18068 hypothetical protein a566L - Chlorella
virus PBCV-1 >gi|2447145|gb|AAC97003.1| (U42580) a566L [Paramecium
bursaria Chlorella virus 1]
Length = 90
Frame -2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 7.7, P = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Frame = -2
Query: 278 KWFVLASLPPPPPTP--FXLRSPSSSSSXYWSLLLPFPT 168
++F++ + PPPPP P F PS + S PFP+
Sbjct: 32 RFFLILTPPPPPPPPPDFTHFFPSQFHPFFMSHTQPFPS 70
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.374 0.170 0.793
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.338 0.145 0.450
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.325 0.138 0.432
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.146 0.464
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.333 0.141 0.475
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.162 0.619
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 168 155 10. 74 3 12 22 0.096 34
30 0.12 36
+2 0 168 155 10. 74 3 12 22 0.096 34
30 0.12 36
+1 0 169 155 10. 74 3 12 22 0.096 34
30 0.12 36
-1 0 169 154 10. 74 3 12 22 0.095 34
30 0.12 36
-2 0 168 157 10. 74 3 12 22 0.098 34
30 0.12 36
-3 0 168 156 10. 74 3 12 22 0.097 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 21
No. of states in DFA: 596 (59 KB)
Total size of DFA: 191 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 159.01u 1.21s 160.22t Elapsed: 00:00:27
Total cpu time: 159.03u 1.25s 160.28t Elapsed: 00:00:27
Start: Mon Oct 1 23:38:01 2001 End: Mon Oct 1 23:38:28 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000