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GEO accession:
Sample GSM227444
Query DataSets for GSM227444
Status
Public on Sep 12, 2007
Title
100210
Sample type
RNA
Source Name
blood from 68 year old male
Organism(s)
Homo sapiens
Characteristics
acute myeloid leukemia
Sex: M
Age: 68
Diagnosis: AML-SECONDARY
Response: Progressive Disease
Unfavorable Karyotype: Other
Baseline WBC: 1.7
Overall Survival (Days) :654
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
acute myeloid leukemia
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Sep 06, 2007
Contact name
Jack Yu
E-mail(s)
jyu9@VRXUS.jnj.com
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE8970
A two-gene classifier for predicting response to the farnesyltransferase inhibitor tipifarnib in acute myeloid leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
542.7
P
AFFX-BioB-M_at
1090.8
P
AFFX-BioB-3_at
707.3
P
AFFX-BioC-5_at
1983.2
P
AFFX-BioC-3_at
2073.1
P
AFFX-BioDn-5_at
3011.8
P
AFFX-BioDn-3_at
10835.4
P
AFFX-CreX-5_at
21683.5
P
AFFX-CreX-3_at
32397.7
P
AFFX-DapX-5_at
34.3
A
AFFX-DapX-M_at
83.8
A
AFFX-DapX-3_at
12.7
A
AFFX-LysX-5_at
39.1
A
AFFX-LysX-M_at
87.6
A
AFFX-LysX-3_at
34.6
A
AFFX-PheX-5_at
9.4
A
AFFX-PheX-M_at
10
A
AFFX-PheX-3_at
114.3
A
AFFX-ThrX-5_at
30.9
A
AFFX-ThrX-M_at
36.8
A
Total number of rows:
22283
Table truncated, full table size
404 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM227444.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Raw data provided as supplementary file
Processed data included within Sample table
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