BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SP_0166
(368 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15900104|ref|NP_344708.1| pyridoxal-dependent decarboxyl... 703 0.0
gi|52550218|gb|AAU84067.1| diaminopimelate decarboxylase [u... 73 3e-11
gi|52548561|gb|AAU82410.1| diaminopimelate decarboxylase [u... 72 4e-11
gi|52549770|gb|AAU83619.1| diaminopimelate decarboxylase [u... 72 6e-11
gi|89094856|ref|ZP_01167789.1| Ornithine decarboxylase [Oce... 72 6e-11
gi|149378202|ref|ZP_01895918.1| decarboxylase, ornithine/DA... 68 1e-09
gi|145525334|ref|XP_001448489.1| hypothetical protein [Para... 67 2e-09
gi|42526619|ref|NP_971717.1| decarboxylase, pyridoxal-depen... 66 3e-09
gi|154249371|ref|YP_001410196.1| Orn/DAP/Arg decarboxylase ... 66 3e-09
gi|21672689|ref|NP_660756.1| diaminopimelate decarboxylase ... 66 4e-09
gi|124298701|gb|ABN04356.1| putative ornithine decarboxylas... 65 7e-09
gi|150006522|ref|YP_001301266.1| diaminopimelate decarboxyl... 65 8e-09
gi|53803251|ref|YP_114999.1| carboxynorspermidine decarboxy... 65 1e-08
gi|152984562|ref|YP_001350471.1| ornithine decarboxylase [P... 64 1e-08
gi|15599715|ref|NP_253209.1| ornithine decarboxylase [Pseud... 64 2e-08
gi|145621591|ref|ZP_01777560.1| Orn/DAP/Arg decarboxylase 2... 64 2e-08
gi|57652470|ref|YP_185011.1| pyridoxal-dependent decarboxyl... 63 3e-08
gi|88802815|ref|ZP_01118342.1| diaminopimelate decarboxylas... 62 5e-08
gi|120553020|ref|YP_957371.1| Ornithine decarboxylase [Mari... 61 1e-07
gi|118793147|ref|XP_001238365.1| ENSANGP00000031768 [Anophe... 61 1e-07
gi|67156236|ref|ZP_00417862.1| Ornithine decarboxylase [Azo... 61 1e-07
gi|82749837|ref|YP_415578.1| probable diaminopimelate decar... 60 2e-07
gi|71280920|ref|YP_269410.1| Orn/DAP/Arg decarboxylase, fam... 60 2e-07
gi|15923113|ref|NP_370647.1| probable diaminopimelate decar... 59 4e-07
gi|49482366|ref|YP_039590.1| pyridoxal-dependent decarboxyl... 59 4e-07
gi|21281825|ref|NP_644911.1| hypothetical protein MW0096 [S... 59 6e-07
gi|150021213|ref|YP_001306567.1| Orn/DAP/Arg decarboxylase ... 57 2e-06
gi|20093921|ref|NP_613768.1| Diaminopimelate decarboxylase ... 57 2e-06
gi|67923188|ref|ZP_00516676.1| Orn/DAP/Arg decarboxylase 2:... 57 2e-06
gi|20091552|ref|NP_617627.1| ornithine decarboxylase [Metha... 57 3e-06
gi|71734289|ref|YP_276391.1| decarboxylase, ornithine/DAP/a... 57 3e-06
gi|70734359|ref|YP_257999.1| pyridoxal-dependent decarboxyl... 56 3e-06
gi|86133354|ref|ZP_01051936.1| diaminopimelate decarboxylas... 56 3e-06
gi|62261067|gb|AAX77957.1| unknown protein [synthetic const... 56 3e-06
gi|77457028|ref|YP_346533.1| Ornithine decarboxylase [Pseud... 56 4e-06
gi|56707207|ref|YP_169103.1| diaminopimelate decarboxylase ... 56 4e-06
gi|54113955|gb|AAV29611.1| NT02FT1732 [synthetic construct] 56 4e-06
gi|85712875|ref|ZP_01043917.1| Carboxynorspermidine decarbo... 56 4e-06
gi|89257094|ref|YP_514456.1| diaminopimelate decarboxylase ... 56 4e-06
gi|151572771|gb|EDN38425.1| hypothetical protein FTDG_01241... 56 4e-06
gi|154150589|ref|YP_001404207.1| Orn/DAP/Arg decarboxylase ... 55 5e-06
gi|109672761|ref|ZP_01374996.1| diaminopimelate decarboxyla... 55 5e-06
gi|66825991|ref|XP_646350.1| hypothetical protein DDBDRAFT_... 55 5e-06
gi|151571310|gb|EDN36964.1| hypothetical protein FTCG_01683... 55 6e-06
gi|118498245|ref|YP_899295.1| pyridoxal-dependent decarboxy... 55 6e-06
gi|149280434|ref|ZP_01886554.1| diaminopimelate decarboxyla... 55 8e-06
gi|56461100|ref|YP_156381.1| Carboxynorspermidine decarboxy... 55 8e-06
gi|88806142|ref|ZP_01121660.1| diaminopimelate decarboxylas... 55 9e-06
gi|126661847|ref|ZP_01732846.1| diaminopimelate decarboxyla... 55 1e-05
gi|42523266|ref|NP_968646.1| hypothetical protein Bd1777 [B... 55 1e-05
>gi|15900104|ref|NP_344708.1| pyridoxal-dependent decarboxylase, Orn/Lys/Arg family
[Streptococcus pneumoniae TIGR4]
gi|149013610|ref|ZP_01834181.1| pyridoxal-dependent decarboxylase, Orn/Lys/Arg family protein
[Streptococcus pneumoniae SP19-BS75]
gi|14971633|gb|AAK74348.1| pyridoxal-dependent decarboxylase, Orn/Lys/Arg family
[Streptococcus pneumoniae TIGR4]
gi|147762801|gb|EDK69756.1| pyridoxal-dependent decarboxylase, Orn/Lys/Arg family protein
[Streptococcus pneumoniae SP19-BS75]
Length = 368
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MINKKIQQVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKAN 60
MINKKIQQVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKAN
Sbjct: 1 MINKKIQQVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKAN 60
Query: 61 SNEKILEFLVDKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDI 120
SNEKILEFLVDKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDI
Sbjct: 61 SNEKILEFLVDKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDI 120
Query: 121 NFLEHLQQFSPKESVGIRVTEPDELNNRMSRFGINICSDNWTSNLQNPLITRLHFHFGEK 180
NFLEHLQQFSPKESVGIRVTEPDELNNRMSRFGINICSDNWTSNLQNPLITRLHFHFGEK
Sbjct: 121 NFLEHLQQFSPKESVGIRVTEPDELNNRMSRFGINICSDNWTSNLQNPLITRLHFHFGEK 180
Query: 181 DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDS 240
DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDS
Sbjct: 181 DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDS 240
Query: 241 TVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIITTLNSSS 300
TVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIITTLNSSS
Sbjct: 241 TVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIITTLNSSS 300
Query: 301 KERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLHRNDFMREVY 360
KERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLHRNDFMREVY
Sbjct: 301 KERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLHRNDFMREVY 360
Query: 361 LWTKNLTY 368
LWTKNLTY
Sbjct: 361 LWTKNLTY 368
>gi|52550218|gb|AAU84067.1| diaminopimelate decarboxylase [uncultured archaeon GZfos36D8]
Length = 425
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 60/367 (16%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVT-FNYQLFYAVKANSNEKILEFLVDKIDGVDVASLS 82
+P V D L +KN T + ++YAVKAN N +L+ L + G DV S
Sbjct: 24 TPLYVTDENKLRNNFKSYKNAFETTNIDTDIYYAVKANGNLALLKILASEGAGADVFSAG 83
Query: 83 ELDVAK-KFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSP-------KES 134
EL++ K P +I NG + S + L ++ +V ++ ++ L+ S +
Sbjct: 84 ELELTKLAGIPAEKILFNGNSKSDDDLKEAVESGVRVSVDSVDELRALSAVANELGREVE 143
Query: 135 VGIRV---TEPD-----ELNNRMSRFG------INICSDNWTSNLQNPLITRLHFH---- 176
+ IRV PD + S+FG I +C + L N L+ LH H
Sbjct: 144 IAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVCEE--AEKLPNVLLAGLHCHIGSQ 201
Query: 177 ------FGEKDDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENR--------- 221
FGE +K + ++++ + +++ ++LGGG + +
Sbjct: 202 ILDITVFGEATEKMMALVERVY------ERGMQLKFVDLGGGLGIGYRQEEKATAPTPED 255
Query: 222 LKEFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTS- 280
L E L L E K D+ ++ ++EPG +I S ++ S VN + + + +D
Sbjct: 256 LAEMILPLFE-NKIRDLGISLKLVLEPGRSIVGASTILL-SRVNAVKRANKNFVAIDAGF 313
Query: 281 --IYTNTLWFVPH---IITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIV 335
+ ++ H + +N + E Y+ + GN C D LP++ + +
Sbjct: 314 NLLIRPVMYDAYHEVVVANKVNERASELYTVV--GNVCESGDIMAKDRMLPKVERGDLVA 371
Query: 336 FFPVGAY 342
GAY
Sbjct: 372 ILDTGAY 378
>gi|52548561|gb|AAU82410.1| diaminopimelate decarboxylase [uncultured archaeon GZfos17C7]
Length = 425
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 60/367 (16%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVT-FNYQLFYAVKANSNEKILEFLVDKIDGVDVASLS 82
+P V D L +KN T + ++YAVKAN N +L+ L + G DV S
Sbjct: 24 TPLYVTDENKLRNNFKSYKNAFETTNIDTDIYYAVKANGNLALLKILASEGAGADVFSAG 83
Query: 83 ELDVAK-KFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSP-------KES 134
EL++ K P +I NG + S + L ++ +V ++ ++ L+ S +
Sbjct: 84 ELELTKLAGIPAEKILFNGNSKSDDDLKEAVESGVRVSVDSVDELRALSAVANELGREVE 143
Query: 135 VGIRV---TEPD-----ELNNRMSRFG------INICSDNWTSNLQNPLITRLHFH---- 176
+ IRV PD + S+FG I +C + L N L+ LH H
Sbjct: 144 IAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVCEE--AEKLPNVLLAGLHCHIGSQ 201
Query: 177 ------FGEKDDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENR--------- 221
FGE +K + ++++ + +++ ++LGGG + +
Sbjct: 202 ILDISVFGEATEKMMALVERMY------ERGMKLKFVDLGGGLGIGYRQEEKATAPTPED 255
Query: 222 LKEFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTS- 280
L E L L E K D+ ++ ++EPG +I S ++ S VN + + + +D
Sbjct: 256 LAEMILPLFE-NKIRDLGISLKLVLEPGRSIVGASTILL-SRVNAVKRANKNFVAIDAGF 313
Query: 281 --IYTNTLWFVPH---IITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIV 335
+ ++ H + +N + E Y+ + GN C D LP++ + +
Sbjct: 314 NLLIRPVMYGAYHEVVVANKVNERASELYTVV--GNVCESGDIMAKDRMLPKVERGDLVA 371
Query: 336 FFPVGAY 342
GAY
Sbjct: 372 ILDTGAY 378
>gi|52549770|gb|AAU83619.1| diaminopimelate decarboxylase [uncultured archaeon GZfos32E4]
Length = 425
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 60/367 (16%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVT-FNYQLFYAVKANSNEKILEFLVDKIDGVDVASLS 82
+P V D L +KN T + ++YAVKAN N +L+ L + G DV S
Sbjct: 24 TPLYVTDENKLRNNFKSYKNAFETTNIDTDIYYAVKANGNLALLKILASEGAGADVFSAG 83
Query: 83 ELDVAK-KFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSP-------KES 134
EL++ K P +I NG + S + L ++ +V ++ ++ L+ S +
Sbjct: 84 ELELTKLAGIPAEKILFNGNSKSDDDLKEAVESGVRVSVDSVDELRALSAVANELGREVE 143
Query: 135 VGIRV---TEPD-----ELNNRMSRFG------INICSDNWTSNLQNPLITRLHFH---- 176
+ IRV PD + S+FG I +C + L N L+ LH H
Sbjct: 144 IAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVCEE--AEKLPNVLLAGLHCHIGSQ 201
Query: 177 ------FGEKDDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENR--------- 221
FGE +K + ++++ + +++ ++LGGG + +
Sbjct: 202 ILDISVFGEATEKMMALVERMY------ERGMKLKFVDLGGGLGIGYRQEEKATAPTPED 255
Query: 222 LKEFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTS- 280
L E L L E K D+ ++ ++EPG +I S ++ S VN + + + +D
Sbjct: 256 LAEMILPLFE-NKIRDLGISLKLVLEPGRSIVGASTILL-SRVNAVKRANKNFVAIDAGF 313
Query: 281 --IYTNTLWFVPH---IITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIV 335
+ ++ H + +N + E Y+ + GN C D LP++ + +
Sbjct: 314 NLLIRPVMYDAYHEVVVANKVNERASELYTVV--GNVCESGDIMAKDRMLPKVERGDLVA 371
Query: 336 FFPVGAY 342
GAY
Sbjct: 372 ILDTGAY 378
>gi|89094856|ref|ZP_01167789.1| Ornithine decarboxylase [Oceanospirillum sp. MED92]
gi|89080911|gb|EAR60150.1| Ornithine decarboxylase [Oceanospirillum sp. MED92]
Length = 385
Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 104/389 (26%), Positives = 169/389 (43%), Gaps = 64/389 (16%)
Query: 8 QVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILE 67
Q LESL + +P + D ++E E ++ P +FYAVKAN ++++E
Sbjct: 12 QSRLESLIE----KYPTPFLAMDLSVVEKRYVELEHGFP---EADIFYAVKANPADEVIE 64
Query: 68 FLVDKIDGVDVASLSELDVAKKFFPPTQISVNGPA--------FSYETLYNLIKKQYKVD 119
L K D+AS ELD + P + G + YE L + D
Sbjct: 65 LLASKGSSFDIASPQELDKVLAYGVPAERMSYGNTIKKASAIKYFYEQGVRLFATDSEAD 124
Query: 120 INFLEHLQQFSPKESVGIRV-TEPDE-LNNRMSR-FGINICSDNWTSNLQ--------NP 168
L+++ +++P ++ IRV T+ E + +SR FG C+ L NP
Sbjct: 125 ---LQNIAKYAPGSNIYIRVLTDGSEGADWPLSRKFG---CNPEMAYELAVLAKELGLNP 178
Query: 169 LITRLHFHFGEKD----DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRLKE 224
H ++D D I K+ I +L E +R + IN+GGGF ++++ + E
Sbjct: 179 YGVSFHVGSQQRDIDVWDGAIAKVKVIFERLLEEAGIR-LEMINMGGGFPAIYLQ-KTNE 236
Query: 225 FFLSLMEI--YKKYDIDSTVTTII-EPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSI 281
F EI + + D + II EPG ++ + +++ V +S + L+ +
Sbjct: 237 FTTYAEEIKRFLREDFGEDIPRIILEPGRSLVGDAGVIVSEVVLIS---RKSSTALERWV 293
Query: 282 YTNTLWFVPHIITTLN-------SSSK--ERYSTILYGNTC------YEHDKYKMKVSLP 326
YT+ F +I TL SSS+ E IL G TC YE KYK+ +S
Sbjct: 294 YTDVGMF-NGLIETLGEAIKYPISSSRQGEEEEVILAGPTCDSLDIMYEQFKYKLPLS-- 350
Query: 327 RLTQNSSIVFFPVGAYIKSNHSNLHRNDF 355
L + ++ GAY S +S++ N F
Sbjct: 351 -LEIGDHVFWYSTGAYTTS-YSSIEFNGF 377
>gi|149378202|ref|ZP_01895918.1| decarboxylase, ornithine/DAP/arginine decarboxylase family 2
[Marinobacter algicola DG893]
gi|149357526|gb|EDM46032.1| decarboxylase, ornithine/DAP/arginine decarboxylase family 2
[Marinobacter algicola DG893]
Length = 391
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 96/385 (24%), Positives = 160/385 (41%), Gaps = 70/385 (18%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+PCVV D + DE P ++YAVKAN ++L L DK D+AS+ E
Sbjct: 30 TPCVVIDTATINRQYDELVEGFPYA---NVYYAVKANPAPQVLTMLRDKGASFDIASVYE 86
Query: 84 LDVAKKFFPPTQISVNGPAFSY----------ETLYNLIKKQYKVDINF-LEHLQQFSPK 132
LD + V G SY T Y + Y D L ++ + +P
Sbjct: 87 LDKV------MGLGVTGDRISYGNTIKKAKDIRTFYERGVRLYATDSEADLRNIAKAAPG 140
Query: 133 ESVGIRVTEPDELNNR--MSR-FGINICSDNWTSNLQNPLITR--------LHFHFGEKD 181
V +R+ L +SR FG C + +L ++ R + FH G +
Sbjct: 141 SKVYVRILTEGTLTADWPLSRKFG---CQTDMAMDLL--ILARDLGLVPYGVSFHVGSQQ 195
Query: 182 ------DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIY 233
D + K+ I +L+E + + E++ IN+GGGF ++ N LK + +
Sbjct: 196 REIGAWDAALGKVKVIFERLKEEDGI-ELKMINMGGGFPANYITRTNDLKTYAEEIKRFL 254
Query: 234 KKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHII 293
+ D IIEPG ++ S + +++ V +S + L ++T+ F +I
Sbjct: 255 DEDFGDDLPEIIIEPGRSLISNAGVLVSEVVLIS---RKSRTALHRWVFTDVGKF-GGLI 310
Query: 294 TTLNSS---------SKERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFP 338
TL+ S S E ++ G TC YEH KY + ++ L + +
Sbjct: 311 ETLDESIKFPIFTEKSGEGEDCVIAGPTCDSADIMYEHHKYPLPLN---LAIGDRMYWLS 367
Query: 339 VGAYIKSNHSNLHRNDF--MREVYL 361
GAY + +S + N F +++ Y+
Sbjct: 368 TGAY-TTTYSAIEFNGFPPLKDYYI 391
>gi|145525334|ref|XP_001448489.1| hypothetical protein [Paramecium tetraurelia]
gi|124416033|emb|CAK81092.1| unnamed protein product [Paramecium tetraurelia]
Length = 408
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 88/374 (23%), Positives = 165/374 (44%), Gaps = 32/374 (8%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNY--QLFYAVKAN 60
N IQ + +SL F SP VYD +++ + +F+ ++ YA KAN
Sbjct: 4 NFTIQNLTPKSLVQ----EFGSPLYVYDEEIIKRQCQTITTALKNSFDQGAKVLYACKAN 59
Query: 61 SNEKILEFL-VDKIDGVDVASLSELDVA-KKFFPPTQISVNGPAFSYETLYNLIKKQYKV 118
+N +L+ + + + G+D S +E++VA + F QI+ + E + I+K +
Sbjct: 60 TNPNVLKIMKSNGVHGIDAVSPNEVEVALQAGFLNNQITFTANYMTKEEIDYAIQKGVIL 119
Query: 119 DINFLEHLQQF-SPKESVGIR------VTEPDELNN--RMSRFGINICSDNWTSNLQNP- 168
++ ++ L++ + K V IR + + +N S+FGIN+ S +Q
Sbjct: 120 NVGEIDTLKKLIAHKAEVIIRLNLDVGIGHHNHVNTGGNDSKFGINLMWKEQLSEIQKQG 179
Query: 169 -LITRLHFHFGEK-----DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFME--- 219
I LH H G K D +++ ++K+ + +L ++ I++GGGF + +
Sbjct: 180 VKIIGLHQHMGSKIMKKDHDSYLLGIEKLFQAATQELELPYLKYIDIGGGFGVKYQDYEE 239
Query: 220 -NRLKEFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLD 278
+ L F + ++Y KY I+ IEPG + + S Y++ + ++ + + D
Sbjct: 240 TSDLNLLFSEIKKLYDKYFINVKPMLFIEPGRYLIAESGYLLCTVQAINTNKSRTFVGTD 299
Query: 279 TSIY---TNTLWFVPHIITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIV 335
+ ++ L+ H I E + GN C D + +L ++ N +V
Sbjct: 300 SGMHHLIRPALYESYHEIINSEEKQVESRLVTVCGNICESGDLLGVDRNL-KVEVNDVLV 358
Query: 336 FFPVGAYIKSNHSN 349
GAY S SN
Sbjct: 359 IQNGGAYGFSMSSN 372
>gi|42526619|ref|NP_971717.1| decarboxylase, pyridoxal-dependent family [Treponema denticola ATCC
35405]
gi|41816812|gb|AAS11598.1| decarboxylase, pyridoxal-dependent family [Treponema denticola ATCC
35405]
Length = 389
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 94/377 (24%), Positives = 161/377 (42%), Gaps = 59/377 (15%)
Query: 21 NFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVAS 80
N +PCVV + ++ + + P +FYA+KAN +E+I+ L + D+AS
Sbjct: 21 NLETPCVVINLKTIKKNYQKLRENFPYA---DIFYAIKANPHEEIISMLNEMGSCFDIAS 77
Query: 81 LSELD-VAKKFFPPTQISVNGP-------AFSYETLYNLIKKQYKVDINFLEHLQQFSPK 132
ELD V K P ++S A+ YE + K D L+++ QF+P
Sbjct: 78 RYELDKVLKLGVSPERLSYGNTIKKAKDIAYFYEKGVRMFATDSKDD---LKNIAQFAPG 134
Query: 133 ESVGIRV-----TEPDELNNRMSRFGI------NICSDNWTSNLQNPLITRLHFHFGEKD 181
V +R+ T D +R +FG ++C S L + + FH G +
Sbjct: 135 SRVYVRILVENTTSADWPLSR--KFGCHPDMAYDLCIQARDSGL---IPYGISFHVGSQQ 189
Query: 182 ------DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIY 233
+ I K ++ L+E +++ + +N+GGGF ++ N L E+ +
Sbjct: 190 RDIGQWNDAIAKTKYLMDSLEEEEEIK-LEMVNMGGGFPASYVTPANDLSEYASEISRYL 248
Query: 234 KKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQV---ITLDTSIYTNTLWFVP 290
+ + I+EPG ++ S ++T V +S N + + LDT ++ + +
Sbjct: 249 EDDFGEERPRIILEPGRSLVGDSGILVTEVVMISRKNNTALFRWVYLDTGLFNGLIETLN 308
Query: 291 H-----IITTLNSSSKERYSTILYGNTC------YEHDKYKMKVSLP-RLTQNSSIVFFP 338
IIT + K+ +L G TC YE KY SLP L + F
Sbjct: 309 ESLKYPIITDKDEGCKKWGEVVLAGPTCDSMDIMYEDYKY----SLPTNLKPGDRVYFLT 364
Query: 339 VGAYIKSNHSNLHRNDF 355
GAY S+++++ N F
Sbjct: 365 TGAY-TSSYASVEFNGF 380
>gi|154249371|ref|YP_001410196.1| Orn/DAP/Arg decarboxylase 2 [Fervidobacterium nodosum Rt17-B1]
gi|154153307|gb|ABS60539.1| Orn/DAP/Arg decarboxylase 2 [Fervidobacterium nodosum Rt17-B1]
Length = 393
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 83/358 (23%), Positives = 158/358 (44%), Gaps = 42/358 (11%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P +V D L + + ++ I N +++YAVK+NS+ +I++FL D DVAS E
Sbjct: 13 TPVLVMD---LNVIANNYRQLIENINNCKVYYAVKSNSHIEIVKFLKDMGSHFDVASRGE 69
Query: 84 LDV--------AKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSPKESV 135
++ ++ F T + F+YE + +++I E + +P +
Sbjct: 70 IEKLLSIGVEPSRMSFGNTIKKIEDIKFAYEVGIRMFAVDAEMEI---EKIALVAPNADI 126
Query: 136 GIRVT----EPDELNNRMSRFGINICSDNWTSNL--------QNPLITRLHFHFGEKD-- 181
+R++ E D +FG ++ N L NP+ L FH G ++
Sbjct: 127 YVRISTNGMEGDADWPLTRKFGTSV---NHAIELVRYAKEKGLNPI--GLSFHVGSQNYN 181
Query: 182 -DKFIVKLDKILFKLQEINKLR-EVREINLGGGFMKLFMEN--RLKEFFLSLMEIYKKYD 237
+ + + + +E + E++ IN GGG ++ + +K+ + E ++Y
Sbjct: 182 PENWRTAIREASIVFEEAKQFGVEMKMINTGGGMPVRYVRDIPSIKKIAKVINEAVEEY- 240
Query: 238 IDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIY---TNTLWFVPHIIT 294
+ + +T I+EPG ++ + MI+ + S+ ++ + LD ++ T T+ + + IT
Sbjct: 241 LGNDITVIVEPGRSMVGNAGVMISRVILRSKKGDENWLYLDAGVFHGLTETIQNIRYRIT 300
Query: 295 TLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIV-FFPVGAYIKSNHSNLH 351
+E +L G TC D LP+ T IV FF GAY +N +
Sbjct: 301 VDGKEDEELEKFVLAGPTCDSVDVMYYDAMLPKSTTLGDIVYFFATGAYTTEYGTNFN 358
>gi|21672689|ref|NP_660756.1| diaminopimelate decarboxylase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008347|sp|Q8K9C4|DCDA_BUCAP Diaminopimelate decarboxylase (DAP decarboxylase)
gi|21623329|gb|AAM67967.1| diaminopimelate decarboxylase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 415
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 101/405 (24%), Positives = 170/405 (41%), Gaps = 59/405 (14%)
Query: 1 MINKKIQQVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKAN 60
++NK + E+++ L F SP VYD ++ ++ K V F A KA
Sbjct: 4 LLNKTKTNLNFENIK-ILIKKFQSPFWVYDSNIIHKKINLLKEFDIVRF------AQKAC 56
Query: 61 SNEKILEFLVDKIDGVDVASLSELDVA--KKFFPPT-QISVNGPAFSYETLYNLIKKQYK 117
SN IL + K VD SL E++ A F P + +I F ETL +I +
Sbjct: 57 SNIHILRLMKQKNIKVDAVSLGEIERALVAGFKPNSNEIIFTADLFDEETLSKVIDFKIP 116
Query: 118 VD---INFLEHLQQFSPKESVGIRV--------TEPDELNNRMSRFGINICSDNWTSNLQ 166
V+ I+ LE L + SP V +R+ ++ S+ GI W L
Sbjct: 117 VNAGSIDMLEQLGKLSPGHHVWLRINPGFGHGHSKKTNTGGENSKHGI------WNPRLA 170
Query: 167 NPLITR-------LHFHFGEK-DDKFIVKLDKILF-KLQEINKLREVREINLGGGFMKLF 217
P+I + LH H G + K + K+ + + K EIN+ ++ I+ GGG +
Sbjct: 171 IPIIKKYKLKLIGLHMHIGSGVNYKHLKKVGQAMIEKAMEINE--KILFISAGGGLPIPY 228
Query: 218 MENR----LKEFFLSLMEIYKKYD--IDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNE 271
N K++F+ E KK +++ + IEPG + + S +I+ + ++ +
Sbjct: 229 TFNEKPIDTKKYFIIWDEARKKISRFLNTPIQLEIEPGRFLVAESGILISQVRAIKKMGD 288
Query: 272 QQVITLDT---SIYTNTLWFVPHIITTL-----NSSSKERYSTILYGNTCYEHDKYKMKV 323
+ + +D + T++ H ++ + N E TI+ G C D + K
Sbjct: 289 KNFVLIDAGFNDLMRPTMYGSYHHVSVVTKDDRNIHETETIDTIIGGPLCESGDIFTQKE 348
Query: 324 -------SLPRLTQNSSIVFFPVGAYIKSNHSNLHRNDFMREVYL 361
LP L ++F VGAY S SN + ++E+ L
Sbjct: 349 GGNITTRKLPILKIGDYLIFHDVGAYGASMSSNYNTRPLIQEILL 393
>gi|124298701|gb|ABN04356.1| putative ornithine decarboxylase [Theobroma cacao]
Length = 411
Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 86/359 (23%), Positives = 146/359 (40%), Gaps = 43/359 (11%)
Query: 25 PCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSEL 84
P V D G++ + D++ +P+ Q FYAVK N N +L L G D AS +E+
Sbjct: 47 PFYVLDLGVVMALFDKWARNLPMA---QPFYAVKCNPNPALLGALATLGSGFDCASKAEI 103
Query: 85 D-VAKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINF--------LEHLQQFSPKESV 135
+ V P +I P + IK V +N LE ++++ PK ++
Sbjct: 104 ESVLSLGVSPGRIIFANPCKAESH----IKYAATVGVNLTTFDSKEELEKIKKWHPKCAL 159
Query: 136 GIRVTEPDELNNRMS---RFGINICSDNWTSNLQNPLITRL-----HFHFGEKDDKF--- 184
IRV PD+ R ++G + T LQ RL FH G +F
Sbjct: 160 LIRVKAPDDGGARCPLGPKYGA--LPEEVTPLLQAAQTARLTVTGVSFHIGSGAMQFRAY 217
Query: 185 --IVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDSTV 242
+ K +F+ + ++ +N+GGGF + ++ Y + + ++
Sbjct: 218 REAIAAAKTVFETAARLGMPKMHVLNIGGGFTAGPQFAEAASTVKAALQAY--FPNEPSL 275
Query: 243 TTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIY--TNTLWFVPHIITT--LNS 298
T I EPG + + T+ + + + ++ IY N + + ++T L
Sbjct: 276 TVIAEPGRFFAESAFTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHAVVTCMPLAR 335
Query: 299 SSKER------YSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLH 351
+S R Y + ++G TC D LP L N +VF +GAY + SN +
Sbjct: 336 ASSPRCKGARTYDSTVFGPTCDALDTVLKVYPLPELQVNDWLVFPNMGAYTAAAGSNFN 394
>gi|150006522|ref|YP_001301266.1| diaminopimelate decarboxylase [Bacteroides vulgatus ATCC 8482]
gi|149934946|gb|ABR41644.1| diaminopimelate decarboxylase [Bacteroides vulgatus ATCC 8482]
Length = 391
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 97/373 (26%), Positives = 160/373 (42%), Gaps = 30/373 (8%)
Query: 21 NFISPCVVYDFGLLETVLDEFKNQIPVTF-NYQLFYAVKANSNEKILEFLVDKIDGVDVA 79
N +PC + D L + + EFK + F N+ + Y++K NS +L L + +V
Sbjct: 5 NLKTPCFILDSDKLVSNVLEFKRALNSRFSNHCIGYSIKTNSLPYMLHMLNELGCYAEVV 64
Query: 80 SLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIKKQYKVDINF---LEHLQQFSPKES- 134
S +E +A + F + I NGPA ET + IK V+I+ +E L + + S
Sbjct: 65 SYTEYALALQVGFEKSHIVYNGPAKDKETFLDAIKNGAYVNIDTKREIEWLNDLNKQHSY 124
Query: 135 -VGIRVT--------EPDELNNRMSRFGINICSD------NWTSNLQNPLITRLHFHFGE 179
VGIRV E + SRFG + + N +N + LH H
Sbjct: 125 KVGIRVNLNLGKISPEDAKEGESDSRFGFSFENGELEEAINKIQLCKNVKLGGLHLHRTS 184
Query: 180 KDDKFIVKLDKILFKLQEINKL-REVREINLGGG-FMKLFMENRLKEFFLSLMEIYKKYD 237
V + + ++ IN L E+ I++GGG F KE+ ++ +
Sbjct: 185 LTRSLNVYRNICKYAIRIINSLGLELDYIDVGGGYFGDKPNAPTYKEYVDTIYSSLLEEG 244
Query: 238 ID-STVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPH-IITT 295
ID S + I+EPG+AI + ++ ++ ++ + Q+I D S +F+ +
Sbjct: 245 IDVSKMKVIVEPGNAIVASPFSFLSEIIDTKKIGDSQIIVTDGSRNDVDPFFLKKDYFKS 304
Query: 296 LNSSSKERY---STILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLHR 352
+E+ S ++ G +C E+DK + P L I++ VGAY + R
Sbjct: 305 FIRKQEEKVFIDSQMVVGCSCLEYDKLFTLQNQPLLNVGDRILYQNVGAYTMTLSPLFIR 364
Query: 353 NDFMREVYLWTKN 365
F VYL T N
Sbjct: 365 --FFPRVYLKTLN 375
>gi|53803251|ref|YP_114999.1| carboxynorspermidine decarboxylase [Methylococcus capsulatus str.
Bath]
gi|53757012|gb|AAU91303.1| carboxynorspermidine decarboxylase [Methylococcus capsulatus str.
Bath]
Length = 375
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 93/364 (25%), Positives = 152/364 (41%), Gaps = 44/364 (12%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P VYD ++ L F+ + +L Y+VK+ +L + ++DG+ +SL E
Sbjct: 4 TPAFVYDQTAIDRTLSTFE-EAAAGSGPRLLYSVKSFPFLPLLRRIAPRVDGLSASSLFE 62
Query: 84 LDV-AKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSPK----ESVGIR 138
+ A+ + + P F + + + V N LE ++S + SVG+R
Sbjct: 63 ARLCAEALAGRGGLHITTPGFRPGEIDEIGRLCDFVSFNSLEQFDRWSARMEGTASVGLR 122
Query: 139 VT-----EPDELNNRM---SRFGINICSDNWTSNLQNPLITRL------HFHFGEKDDKF 184
V PD + S+ G+ + L + RL HFH D
Sbjct: 123 VNPQLSFAPDPRYDPCRPHSKLGVPL------DRLVPAEVGRLERLEGIHFH-TVFDCAS 175
Query: 185 IVKLDKILFKLQEI--NKLREVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDSTV 242
L +IL KL+ +L+ +R +NLGGG+ RL+ L + D +
Sbjct: 176 FEPLAEILAKLENKLGERLKRLRWLNLGGGY-------RLEGDLGRLAGFSTRLQRDYGL 228
Query: 243 TTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIITTLNSSSKE 302
EPG A+ + Y++ S ++V + V LD+SI + F L +E
Sbjct: 229 EVYFEPGKAVIGSAGYLVASVIDVFNSGGKTVAVLDSSINHHPEVFEYQRSPRLAEVCEE 288
Query: 303 -RYSTILYGNTCYEHDKYKMKVSLP-RLTQNSSIVFFPVGAY--IKSNHSNLHRNDFMRE 358
R + IL G TC D + + +LP R +VF VGAY +K+N N H +
Sbjct: 289 GRETAILAGGTCLAGDLFG-EYALPTRPRIGDRLVFEDVGAYTLVKANRFNGHN---LPS 344
Query: 359 VYLW 362
+Y W
Sbjct: 345 IYRW 348
>gi|152984562|ref|YP_001350471.1| ornithine decarboxylase [Pseudomonas aeruginosa PA7]
gi|150959720|gb|ABR81745.1| ornithine decarboxylase [Pseudomonas aeruginosa PA7]
Length = 387
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 95/384 (24%), Positives = 165/384 (42%), Gaps = 68/384 (17%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P VV D + D+ + P +++YAVKAN +I E L DK D+AS+ E
Sbjct: 26 TPFVVIDRQTIADAYDQLTDCFPFA---RIYYAVKANPATEITELLRDKGSNFDIASIYE 82
Query: 84 LD-VAKKFFPPTQISVNGPA-------FSYETLYNLIKKQYKVDINFLEHLQQFSPKESV 135
LD V K P +IS + YE L + D L ++ + +P V
Sbjct: 83 LDKVLKTGVGPERISYGNTIKKSKDIRYFYEKGVRLFATDSEAD---LRNIAKAAPGAKV 139
Query: 136 GIRV-----TEPDELNNRMSRFGINICSDNWTSNLQNPLITR--------LHFHFGEKD- 181
+R+ T D +R +FG C + +L ++ R + FH G +
Sbjct: 140 YVRILTEGSTTADWPLSR--KFG---CQTDMAMDLL--ILARQLGLEPYGISFHVGSQQR 192
Query: 182 -----DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIYK 234
D I K+ I +L+E + + ++ IN+GGGF ++ N L+ + ++ K
Sbjct: 193 DISVWDAAIAKVKVIFERLKEEDGI-VLKMINMGGGFPANYITKTNDLETYAEEIIRFLK 251
Query: 235 KYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIIT 294
+ D I+EPG ++ + + +++ V V+ + V + +Y + F +I
Sbjct: 252 EDFGDDLPEIILEPGRSLIANAGILVSEVVLVARKSRTAV---ERWVYADVGKF-SGLIE 307
Query: 295 TLNSSSK---------ERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFPV 339
T++ S K E ++ G TC YEH KY + ++ L+ + +
Sbjct: 308 TMDESIKFPIWTEKQGEMEEVVIAGPTCDSADIMYEHYKYGLPLN---LSSGDRLYWLST 364
Query: 340 GAYIKSNHSNLHRNDF--MREVYL 361
GAY S +S + N F ++ YL
Sbjct: 365 GAYTTS-YSAVEFNGFPPLKAFYL 387
>gi|15599715|ref|NP_253209.1| ornithine decarboxylase [Pseudomonas aeruginosa PAO1]
gi|84317153|ref|ZP_00965609.1| COG0019: Diaminopimelate decarboxylase [Pseudomonas aeruginosa
C3719]
gi|84322947|ref|ZP_00971024.1| COG0019: Diaminopimelate decarboxylase [Pseudomonas aeruginosa
2192]
gi|107099896|ref|ZP_01363814.1| hypothetical protein PaerPA_01000917 [Pseudomonas aeruginosa PACS2]
gi|116052549|ref|YP_792864.1| putative ornithine decarboxylase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|9950761|gb|AAG07907.1|AE004866_1 ornithine decarboxylase [Pseudomonas aeruginosa PAO1]
gi|115587770|gb|ABJ13785.1| putative ornithine decarboxylase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170754|gb|EAZ56265.1| hypothetical protein PACG_04987 [Pseudomonas aeruginosa C3719]
gi|126198047|gb|EAZ62110.1| hypothetical protein PA2G_05538 [Pseudomonas aeruginosa 2192]
Length = 387
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 95/384 (24%), Positives = 164/384 (42%), Gaps = 68/384 (17%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P VV D + D+ + P +++YAVKAN +I E L DK D+AS+ E
Sbjct: 26 TPFVVIDKQTIADAYDQLTDCFPFA---RIYYAVKANPATEITELLRDKGSNFDIASIYE 82
Query: 84 LD-VAKKFFPPTQISVNGPA-------FSYETLYNLIKKQYKVDINFLEHLQQFSPKESV 135
LD V K P +IS + YE L + D L ++ + +P V
Sbjct: 83 LDKVMKTGVGPERISYGNTIKKSKDIRYFYEKGVRLFATDSEAD---LRNIAKAAPGAKV 139
Query: 136 GIRV-----TEPDELNNRMSRFGINICSDNWTSNLQNPLITR--------LHFHFGEKD- 181
+R+ T D +R +FG C + +L ++ R + FH G +
Sbjct: 140 YVRILTEGSTTADWPLSR--KFG---CQTDMAMDLL--ILARQLGLEPYGISFHVGSQQR 192
Query: 182 -----DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIYK 234
D I K+ I +L+E + + ++ IN+GGGF ++ N L+ + ++ K
Sbjct: 193 DISVWDAAIAKVKVIFERLKEEDGI-VLKMINMGGGFPANYITKTNDLETYAEEIIRFLK 251
Query: 235 KYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIIT 294
+ D I+EPG ++ + + +++ V V+ + V + +Y + F +I
Sbjct: 252 EDFGDDLPEIILEPGRSLIANAGILVSEVVLVARKSRTAV---ERWVYADVGKF-SGLIE 307
Query: 295 TLNSSSK---------ERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFPV 339
T++ S K E ++ G TC YEH KY + ++ L + +
Sbjct: 308 TMDESIKFPIWTEKQGEMEEVVIAGPTCDSADIMYEHYKYGLPLN---LASGDRLYWLST 364
Query: 340 GAYIKSNHSNLHRNDF--MREVYL 361
GAY S +S + N F ++ YL
Sbjct: 365 GAYTTS-YSAVEFNGFPPLKAFYL 387
>gi|145621591|ref|ZP_01777560.1| Orn/DAP/Arg decarboxylase 2 [Petrotoga mobilis SJ95]
gi|144948228|gb|EDJ83255.1| Orn/DAP/Arg decarboxylase 2 [Petrotoga mobilis SJ95]
Length = 413
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 166/350 (47%), Gaps = 34/350 (9%)
Query: 50 NYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQI---SVNGPAFSY 105
+++ F+AVKA N IL+ ++ GVD +S++EL A+K F +I S + P Y
Sbjct: 49 DFKEFFAVKATPNPNILKITKEEGCGVDCSSMAELVAAEKSGFVNNEILFTSNDTPLQEY 108
Query: 106 ETLYNLIKKQYKVDINFLEHL-QQFSPKESVGIRVTEPDELNNRM------SRFGINICS 158
E +L D++ ++ L +++ + V IR + N + S+FG+
Sbjct: 109 EKALSLNAILNLDDVSHIDLLKEKYKLPDLVSIRYNPGGDFGNEIIGNLKESKFGVPKKD 168
Query: 159 -DNWTSNLQNPLITRLHFHF----GEKDDKFIVKLDKILFKLQ-EINK--LREVREINLG 210
N + L++ + R H E + + I+K+ + LF+ E+NK + + INLG
Sbjct: 169 LINGFARLKDYGVKRFGLHAMLISNELNPQNIIKVAQFLFETAVEVNKKLVIDFEFINLG 228
Query: 211 GGFMKLFM--ENRLKEFFLS--LMEIYKKYDIDSTV---TTIIEPGSAITSFSAYMITSP 263
GGF + E L +++S + ++Y+ +++ + +E G IT + Y+IT
Sbjct: 229 GGFGIPYKPEETELDIYYISRQIKKLYENVLLENGLKPPKIYMEHGRYITGPNGYLITKV 288
Query: 264 VNVSEVNEQQ--VITLDTSIYTNTLWFVPHIITTLNSSSKERYSTILY---GNTCYEHDK 318
+++ E ++ + ++ ++ H IT LN +S E+ T LY G+ C +DK
Sbjct: 289 LHIKESYKKYAGIDANSANLLRPAMYKAYHHITVLNKNSDEK--TELYDVVGSLCENNDK 346
Query: 319 YKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLHRNDFMREVYLWTKNLTY 368
LP L + +VF VGA+ S N + YL+TK+ +
Sbjct: 347 LATDRLLPELKRGDVLVFHDVGAHGYSMGYN-YNGKLRSAEYLFTKDRAF 395
>gi|57652470|ref|YP_185011.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus COL]
gi|87160623|ref|YP_492842.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus USA300]
gi|88193897|ref|YP_498682.1| hypothetical protein SAOUHSC_00082 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151220279|ref|YP_001331102.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|32441994|gb|AAP82070.1| SbnH [Staphylococcus aureus]
gi|57286656|gb|AAW38750.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus COL]
gi|87126597|gb|ABD21111.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87201455|gb|ABD29265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150373079|dbj|BAF66339.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
str. Newman]
Length = 400
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 87/354 (24%), Positives = 142/354 (40%), Gaps = 41/354 (11%)
Query: 28 VYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVA 87
+YD LE L + +P N Q++YA+KANS KIL+ + ++G +VAS E+
Sbjct: 22 IYDLVGLEHHLQHITSSLPS--NCQMYYAMKANSERKILDTISQYVEGFEVASQGEIAKG 79
Query: 88 KKFFPPTQISVNGPAFSYETL-YNLIKKQYKVDINFLEHLQQFSP-------KESVGIRV 139
F P I GP + E L Y + + ++ + + LQ+ + + + +RV
Sbjct: 80 LAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRV 139
Query: 140 TEPDELNN-------RMSRFGI--NICSDNWTSNLQNPLITRLHFHF----GEKDDKFIV 186
N R ++FGI + D + L P I FHF D V
Sbjct: 140 NLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIHLDGFHFHSISNNLDSNLHV 199
Query: 187 KLDKILFKLQEI--NKLR-EVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDST-- 241
+ K+ FK + K R ++ INLGGG + + + + + +E +K ++
Sbjct: 200 DVVKLYFKKAKAWSEKHRFPLKHINLGGGIGVNYADLTNQFEWDNFVERFKTLIVEQEME 259
Query: 242 -VTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTL---WFVPHIIT--- 294
VT E G I + Y +T +++ +V+ L L W H
Sbjct: 260 DVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFDIYR 319
Query: 295 ------TLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
+ S R T L G C D + +V + ++ IVF GAY
Sbjct: 320 YKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAY 373
>gi|88802815|ref|ZP_01118342.1| diaminopimelate decarboxylase [Polaribacter irgensii 23-P]
gi|88781673|gb|EAR12851.1| diaminopimelate decarboxylase [Polaribacter irgensii 23-P]
Length = 422
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 96/385 (24%), Positives = 159/385 (41%), Gaps = 36/385 (9%)
Query: 5 KIQQVVLESLQNF-LNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNE 63
KI Q LE Q L + SP VYD +E + N N +L YAVKA SN
Sbjct: 3 KINQHPLERTQLLELATKYGSPLYVYDTDKIEAQYNRLTNAFSTVKNLKLNYAVKALSNI 62
Query: 64 KILEFLVDKIDGVDVASLSELDVA-KKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINF 122
IL+FL G+D S+ E+ + P +I S + + K +++I+
Sbjct: 63 NILKFLQGIGAGLDTVSIQEVQLGLTTGIDPKKIIFTPNGVSLTEIEEVAKLGVQINIDN 122
Query: 123 LEHLQQFS---PKESVGIRVTEPDELNNRMSRFGI-NICSDNWTSNLQNPLITR------ 172
L L+ F PK V +R+ P + S+ + +I S S Q P I R
Sbjct: 123 LSILELFGQKHPKIPVCVRIN-PHIMAGGNSKISVGHIDSKFGISIHQVPHIKRVVENTG 181
Query: 173 -----LHFHFGEK--DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFME----NR 221
+H H G D ++ +ILF + + + + I+ G GF + E
Sbjct: 182 MNINGIHMHTGSDILDIDTFLRATEILFDVAK--QFENIDFIDFGSGFKVPYKEGDISTD 239
Query: 222 LKEFFLSLMEIYKKYDID--STVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDT 279
+++ L L E + + ++ +T + EPG + S A + + VNV + V
Sbjct: 240 IEQLGLQLSERFNDFCVEYGKEITLMFEPGKFLVS-EAGVFLAKVNVVKQTTSTVFAHVD 298
Query: 280 SIYTNTLWFV-----PHIITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSI 334
S + + + + HI N+ ++RY +++ G C E D + + +++ +
Sbjct: 299 SGFNHLVRPMMYDSYHHITNISNTEGRDRYYSVV-GYIC-ETDTFGSNRRISEISEEDVL 356
Query: 335 VFFPVGAYIKSNHSNLHRNDFMREV 359
F GAY S SN + EV
Sbjct: 357 CFHNAGAYCFSMASNYNSRYLPAEV 381
>gi|120553020|ref|YP_957371.1| Ornithine decarboxylase [Marinobacter aquaeolei VT8]
gi|120322869|gb|ABM17184.1| Ornithine decarboxylase [Marinobacter aquaeolei VT8]
Length = 391
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 99/399 (24%), Positives = 169/399 (42%), Gaps = 73/399 (18%)
Query: 11 LESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLV 70
+ +++F +G +P VV D ++ +E P +++YAVKAN +IL L
Sbjct: 18 FKRIKDFADGKE-TPFVVIDTQTIDRQYEELVEGFPYA---KVYYAVKANPAPQILNMLR 73
Query: 71 DKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSY----------ETLYNLIKKQYKVDI 120
DK D+AS+ ELD + V G SY T Y + Y D
Sbjct: 74 DKGANFDIASVYELDKV------MALGVTGDRISYGNTIKKAKDIRTFYEKGVRLYATDS 127
Query: 121 NF-LEHLQQFSPKESVGIRVTEPDELNNR--MSR-FGINICSDNWTSNLQNPLITR---- 172
L ++ + +P V +R+ L +SR FG C + +L ++ R
Sbjct: 128 EADLRNIAKAAPGSKVYVRILTEGTLTADWPLSRKFG---CQTDMAMDLL--ILARDLGL 182
Query: 173 ----LHFHFGEKD------DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRL 222
+ FH G + D + K+ I +L+E + + E++ IN+GGGF ++ R
Sbjct: 183 VPYGVSFHVGSQQREIGAWDAALNKVKVIFERLKEEDGI-ELKMINMGGGFPANYI-TRT 240
Query: 223 KEFFLSLMEI--YKKYDI-DSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDT 279
E + EI + D D IIEPG ++ S + +++ V +S + L
Sbjct: 241 NELGVYAEEIARFLHEDFGDDLPEIIIEPGRSLISNAGVLVSEVVLIS---RKSRTALHR 297
Query: 280 SIYTNTLWFVPHIITTLNSS---------SKERYSTILYGNTC------YEHDKYKMKVS 324
++T+ F +I TL+ S S E ++ G TC YEH KY + ++
Sbjct: 298 WVFTDVGKF-SGLIETLDESIKFPIWTEKSGEGEDCVIAGPTCDSADIMYEHHKYPLPLN 356
Query: 325 LPRLTQNSSIVFFPVGAYIKSNHSNLHRNDF--MREVYL 361
L + + GAY + +S + N F +++ Y+
Sbjct: 357 ---LAIGDRMYWLSTGAY-TTTYSAIEFNGFPPLKDYYI 391
>gi|118793147|ref|XP_001238365.1| ENSANGP00000031768 [Anopheles gambiae str. PEST]
gi|116117239|gb|EAU75863.1| AGAP011807-PA [Anopheles gambiae str. PEST]
Length = 397
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 84/324 (25%), Positives = 143/324 (44%), Gaps = 44/324 (13%)
Query: 54 FYAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLI 112
+YAVK N + +IL+ L+ G D AS E++ + P I PA S +L
Sbjct: 58 YYAVKCNDDPRILQTLMTLGTGFDCASKGEMERMLGYGVKPESIIFAQPAKSIPSLLYAR 117
Query: 113 KKQYKVDINF-----LEHLQQFSPKESVGIRVTEPDELNNRMS---RFGINICSD----- 159
KQ V + F LE + Q+ P+ + +R+ D L R S +FG + ++
Sbjct: 118 SKQVSV-MTFDGAVELEKIHQYYPEARLVLRMRH-DSLKVRCSLGKKFGCDPIAEAPELL 175
Query: 160 NWTSNLQNPLITRLHFHFGEKDDKF-----IVKLDKILFKLQEINKLREVREINLGGGFM 214
+ + L+ +I + FH G D+ VK+ K LF+ + E +++GGGF
Sbjct: 176 RYAATLRMNVIG-ISFHVGSDCDEHEVYYEAVKIAKGLFEYAKTIGY-EFSLLDIGGGFP 233
Query: 215 KLFMENRLKEFFLSL-MEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQ 273
+ + + ++ + I + + +S + I EPG S SA + S V+ V +++
Sbjct: 234 G-DNDKPIDRYVQAVNVAIDQFFPAESDIRIIAEPGRYYVS-SAVTLVSFVDSKRVMKEK 291
Query: 274 VITLDTSIYTNTLWFV---------------PHIITTLNSSSKERYSTILYGNTCYEHDK 318
D + T +++ ++ + S +RY T L+G TC+ DK
Sbjct: 292 --QPDGTEKTRMYYYLNDGIFGTFYCTALEGQQVVPIVRSKLTKRYDTTLWGPTCHVVDK 349
Query: 319 YKMKVSLPRLTQNSSIVFFPVGAY 342
+ LP L S+VF VGAY
Sbjct: 350 IA-EARLPELDVGDSVVFENVGAY 372
>gi|67156236|ref|ZP_00417862.1| Ornithine decarboxylase [Azotobacter vinelandii AvOP]
gi|67086566|gb|EAM06035.1| Ornithine decarboxylase [Azotobacter vinelandii AvOP]
Length = 387
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 91/382 (23%), Positives = 165/382 (43%), Gaps = 64/382 (16%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P VV D ++ +E + P +++YAVKAN +I+ L DK D+AS E
Sbjct: 26 TPFVVIDTEIIANAYEELGDCFPFA---RIYYAVKANPAVEIIRLLRDKGSNFDIASRYE 82
Query: 84 LD-VAKKFFPPTQISVNGPA-------FSYETLYNLIKKQYKVDINFLEHLQQFSPKESV 135
LD V + P ++S + YE L + D L ++ + +P V
Sbjct: 83 LDKVMAEGVGPERVSYGNTIKKAKDIRYFYEKGVRLFATDSEAD---LRNIAKAAPGSKV 139
Query: 136 GIRVTEPDELNNR--MSR-FGINICSDNWTSNLQNPLITR--------LHFHFGEKD--- 181
+R+ + +SR FG C + +L ++ R L FH G +
Sbjct: 140 YVRILTEGTASADWPLSRKFG---CQPDMALDLM--ILARQLGLVPYGLSFHVGSQQRDI 194
Query: 182 ---DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIYKKY 236
D I K+ I +L++ + + E++ IN+GGGF ++ N L+ + ++ K+
Sbjct: 195 DVWDAVIAKVKVIFERLKQEDGI-ELKMINMGGGFPANYITKTNSLQTYAEEIIRFLKED 253
Query: 237 DIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIITTL 296
+ I+EPG ++ + + +++ V VS + V + +YT+ F +I T+
Sbjct: 254 FGEELPEIILEPGRSLIANAGILVSEVVLVSRKSRTAV---ERWVYTDVGKF-SGLIETM 309
Query: 297 NSSSK---------ERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFPVGA 341
+ + K E ++ G TC YE+ KY + ++ L + + GA
Sbjct: 310 DEAIKYPIWTEKKGEMEEVVIAGPTCDSADIMYENYKYGLPLN---LASGDRLYWLSTGA 366
Query: 342 YIKSNHSNLHRNDF--MREVYL 361
Y S +S + N F ++ YL
Sbjct: 367 YTTS-YSAVEFNGFPPLKSYYL 387
>gi|82749837|ref|YP_415578.1| probable diaminopimelate decarboxylase protein [Staphylococcus
aureus RF122]
gi|82655368|emb|CAI79750.1| probable diaminopimelate decarboxylase protein [Staphylococcus
aureus RF122]
Length = 400
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 41/354 (11%)
Query: 28 VYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVA 87
+YD LE L + +P N Q++YA+KANS IL+ + ++G +VAS E+
Sbjct: 22 IYDLVGLEHHLQHITSSLPN--NCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKG 79
Query: 88 KKFFPPTQISVNGPAFSYETL-YNLIKKQYKVDINFLEHLQQFSP-------KESVGIRV 139
F P I GP + E L Y + + ++ + + LQ+ + + + +RV
Sbjct: 80 LAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRV 139
Query: 140 TEPDELNN-------RMSRFGI--NICSDNWTSNLQNPLITRLHFHF----GEKDDKFIV 186
N R ++FGI + D + L P I FHF D V
Sbjct: 140 NLAGPFPNATLHMAGRPTQFGISEDDVDDVIEAALAMPKIHLDGFHFHSISNNLDSNLHV 199
Query: 187 KLDKILFKLQEI--NKLR-EVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDST-- 241
+ K+ FK + K R ++ INLGGG + + + + + +E +K ++
Sbjct: 200 DVVKLYFKKAKAWSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEME 259
Query: 242 -VTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTL---WFVPHIIT--- 294
VT E G I + Y +T +++ +V+ L L W H
Sbjct: 260 DVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFDIYR 319
Query: 295 ------TLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
+ S R T L G C D + +V + ++ IVF GAY
Sbjct: 320 YKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAY 373
>gi|71280920|ref|YP_269410.1| Orn/DAP/Arg decarboxylase, family 2 [Colwellia psychrerythraea 34H]
gi|71146660|gb|AAZ27133.1| Orn/DAP/Arg decarboxylase, family 2 [Colwellia psychrerythraea 34H]
Length = 425
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 90/365 (24%), Positives = 150/365 (41%), Gaps = 58/365 (15%)
Query: 32 GLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVA-KKF 90
GL +TV D + P F + +AVKAN+ K+LE L + G +VAS EL +A
Sbjct: 31 GLKKTVNDAYA-AFPANFFHT--FAVKANALVKVLEPLREYGMGAEVASPGELLIAVTAG 87
Query: 91 FPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFS------PKES--VGIRVTE- 141
F I + PA + + L IKK ++I+ L+ L++ P+ + +G RV
Sbjct: 88 FTAENIIFDSPAKTLQDLRTCIKKGIALNIDNLQELERIDALMLEFPESTSIIGFRVNPQ 147
Query: 142 -------PDELNNRMSRFGINICSDNWTSNL-----QNPLITRLHFHFGEK--DDKFIVK 187
S+FG + + + L + P + +H H G + + + K
Sbjct: 148 IGGGKIGSTSTATATSKFGYALVDGDNRNELISIYKKRPWLKSIHTHSGSQGCELSLMAK 207
Query: 188 LDKILFKL-QEINK---LREVREINLGGGFMKLFMENRLKEFFLSLMEIYK--------- 234
KI+ +L +EIN L+++ +++GGG F +K F +I K
Sbjct: 208 GIKIITELAEEINSLVGLQQITRLDIGGGLPVNFSSEIIKPSFKDYADILKAEVPLLFTD 267
Query: 235 KYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLD--TSIYTNTLWFV--- 289
KY + + E G AI + + +IT + + T I T T +
Sbjct: 268 KYQVKT------EFGRAIVAKNGVIITRVEYTKNSGGRHIATTHAGAQIITRTAFLPKSW 321
Query: 290 PHIITTLNSSSKER-------YSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
P +T + +ER +T + G C+ D LP+L N ++ G Y
Sbjct: 322 PIRVTGYTTKGEERTAQTSEVVTTDVAGPCCFAGDLICSNQPLPKLESNDYVMVHDTGGY 381
Query: 343 IKSNH 347
+NH
Sbjct: 382 YFTNH 386
>gi|15923113|ref|NP_370647.1| probable diaminopimelate decarboxylase protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|15925827|ref|NP_373360.1| hypothetical protein SA0119 [Staphylococcus aureus subsp. aureus
N315]
gi|148266550|ref|YP_001245493.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH9]
gi|150392588|ref|YP_001315263.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH1]
gi|156978453|ref|YP_001440712.1| hypothetical protein SAHV_0122 [Staphylococcus aureus subsp. aureus
Mu3]
gi|13700039|dbj|BAB41338.1| putative diaminopimelate decarboxylase [Staphylococcus aureus
subsp. aureus N315]
gi|14245890|dbj|BAB56285.1| probable diaminopimelate decarboxylase protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|147739619|gb|ABQ47917.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH9]
gi|149945040|gb|ABR50976.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH1]
gi|156720588|dbj|BAF77005.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
Length = 400
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 41/354 (11%)
Query: 28 VYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVA 87
+YD LE L + +P N Q++YA+KANS IL+ + ++G +VAS E+
Sbjct: 22 IYDLVGLEHHLQHITSSLPS--NCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKG 79
Query: 88 KKFFPPTQISVNGPAFSYETL-YNLIKKQYKVDINFLEHLQQFSP-------KESVGIRV 139
F P I GP + E L Y + + ++ + + LQ+ + + + +RV
Sbjct: 80 LAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRV 139
Query: 140 TEPDELNN-------RMSRFGI--NICSDNWTSNLQNPLITRLHFHF----GEKDDKFIV 186
N R ++FGI + D + L P I FHF D V
Sbjct: 140 NLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHV 199
Query: 187 KLDKILFKLQE--INKLR-EVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDST-- 241
+ K+ FK + K R ++ INLGGG + + + + + +E +K ++
Sbjct: 200 DVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEME 259
Query: 242 -VTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTL---WFVPHIIT--- 294
VT E G I + Y +T +++ +V+ L L W H
Sbjct: 260 DVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFEIYR 319
Query: 295 ------TLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
+ S R T L G C D + +V + ++ IVF GAY
Sbjct: 320 YKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAY 373
>gi|49482366|ref|YP_039590.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49240495|emb|CAG39152.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus MRSA252]
Length = 400
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 83/354 (23%), Positives = 140/354 (39%), Gaps = 41/354 (11%)
Query: 28 VYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVA 87
+YD LE L + +P N Q++YA+KANS IL+ + ++G +VAS E+
Sbjct: 22 IYDLVGLEHHLQHITSSLPS--NCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKG 79
Query: 88 KKFFPPTQISVNGPAFSYETL-YNLIKKQYKVDINFLEHLQQFSP-------KESVGIRV 139
F P I GP + E L Y + + ++ + + LQ+ + + + +RV
Sbjct: 80 LVFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRV 139
Query: 140 TEPDELNN-------RMSRFGI--NICSDNWTSNLQNPLITRLHFHF----GEKDDKFIV 186
N R ++FGI + D + L P I FHF D V
Sbjct: 140 NLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGFHFHSISNNLDSNLHV 199
Query: 187 KLDKILFKLQEINKLRE---VREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDST-- 241
+ K+ FK + + ++ INLGGG + + + + + +E +K ++
Sbjct: 200 DVVKLYFKKAKAWSEKHQFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEME 259
Query: 242 -VTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTL---WFVPHIIT--- 294
VT E G I + Y +T +++ +V+ L L W H
Sbjct: 260 DVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFDIYR 319
Query: 295 ------TLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
+ S R T L G C D + ++ + ++ IVF GAY
Sbjct: 320 YKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREIQIEAISTGDVIVFKYAGAY 373
>gi|21281825|ref|NP_644911.1| hypothetical protein MW0096 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485000|ref|YP_042221.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus MSSA476]
gi|21203260|dbj|BAB93961.1| putative diaminopimelate decarboxylase [Staphylococcus aureus
subsp. aureus MW2]
gi|49243443|emb|CAG41864.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus MSSA476]
Length = 400
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 140/354 (39%), Gaps = 41/354 (11%)
Query: 28 VYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVA 87
+YD LE L +P N Q++YA+KANS IL+ + ++G +VAS E+
Sbjct: 22 IYDLVGLEHHLQHITLSLPS--NCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKG 79
Query: 88 KKFFPPTQISVNGPAFSYETL-YNLIKKQYKVDINFLEHLQQFSP-------KESVGIRV 139
F P I GP + E L Y + + ++ + + LQ+ + + + +RV
Sbjct: 80 LAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRV 139
Query: 140 TEPDELNN-------RMSRFGI--NICSDNWTSNLQNPLITRLHFHF----GEKDDKFIV 186
N R ++FGI + D + L P I FHF D V
Sbjct: 140 NLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGFHFHSISNNLDSNLHV 199
Query: 187 KLDKILFKLQE--INKLR-EVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDST-- 241
+ K+ FK + K R ++ INLGGG + + + + + +E +K ++
Sbjct: 200 DVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEME 259
Query: 242 -VTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTL---WFVPHIIT--- 294
VT E G I + Y +T +++ +V+ L L W H
Sbjct: 260 DVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFEIYR 319
Query: 295 ------TLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
+ S R T L G C D + +V + ++ IVF GAY
Sbjct: 320 YKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAY 373
>gi|150021213|ref|YP_001306567.1| Orn/DAP/Arg decarboxylase 2 [Thermosipho melanesiensis BI429]
gi|149793734|gb|ABR31182.1| Orn/DAP/Arg decarboxylase 2 [Thermosipho melanesiensis BI429]
Length = 386
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 80/357 (22%), Positives = 159/357 (44%), Gaps = 36/357 (10%)
Query: 22 FISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASL 81
F +P +V D +++ ++ I N +++YAVKANS+ +IL+ L D DVAS
Sbjct: 17 FGTPVLVMDLNIVKA---NYEKLIDNVRNSRVYYAVKANSHIEILKLLRDLGSYFDVASR 73
Query: 82 SELDVAKKF-FPPTQISVNGPAFSYETL---YNLIKKQYKVDINF-LEHLQQFSPKESVG 136
E++ P ++S + + YN + + VD +E + +P +
Sbjct: 74 PEIEKLLSIGVEPERMSFGNTIKKTKDISFAYNNGIRMFAVDSEMEIEKIADNAPGSDIY 133
Query: 137 IRVT----EPDELNNRMSRFGINICSD----NWTSNLQ-NPLITRLHFHFGEKD---DKF 184
+R++ E D +FG ++ + +L+ NP+ + FH G ++ D +
Sbjct: 134 VRISTNGMEDDADWPLTRKFGTSVDHAIKLVKYAVDLELNPI--GVSFHVGSQNYNPDNW 191
Query: 185 IVKLDKILFKLQEINKLR-EVREINLGGGFMKLFMEN--RLKEFFLSLMEIYKKYDID-- 239
V + ++ +E K+ ++ +N GGG + N ++E + E+ K +D
Sbjct: 192 RVAIREVSVVFEEARKMGIDMYMVNTGGGMPVKYSRNIPSVEE----ISEVINKAIVDYI 247
Query: 240 -STVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIY---TNTLWFVPHIITT 295
++EPG ++ + M+TS + S+ E+ + D I+ T T+ + + +
Sbjct: 248 GENTLVVLEPGRSMVGSAGAMVTSVILRSKKGEENWVYTDAGIFHGLTETIQNIRYEVEV 307
Query: 296 LNSSSKERYSTILYGNTCYEHDKYKMKVSLPR-LTQNSSIVFFPVGAYIKSNHSNLH 351
+ +E+ +L G TC D + L + +T + IV + GAY +N +
Sbjct: 308 IGRELEEKGKFVLAGPTCDSVDVMYYDIELAKNVTIDDLIVLYNTGAYTTEYSTNFN 364
>gi|20093921|ref|NP_613768.1| Diaminopimelate decarboxylase [Methanopyrus kandleri AV19]
gi|19886865|gb|AAM01698.1| Diaminopimelate decarboxylase [Methanopyrus kandleri AV19]
Length = 405
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 55/337 (16%)
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSYETLYNLIKK 114
YA+KAN N ++E +VD+ DV SL E+ VA T + VNG A S + + +++
Sbjct: 48 YAMKANFNPYLVEHIVDETRAADVVSLWEMKVAVNAGAET-VVVNGNAKSSDEIRAAVER 106
Query: 115 QYKVDINFLEHLQQFSP-------KESVGIRV---TEPDELNN-----RMSRFGIN---- 155
+ ++++ E Q+ + V +RV PD ++ S+FG+
Sbjct: 107 SWVINVDSFEEFQRIEKIARHEGERALVALRVNPKVSPDTHSHIATAVEGSKFGVELEIA 166
Query: 156 --IC----SDNWTSNLQNPLITRLHFHFGEKDDK---FIVKLDKILFKLQEINKLREVRE 206
+C W L LH+H G + F L + L++ + E+
Sbjct: 167 ERVCRRMIESEWVEFLG------LHYHIGSQITDLRPFSEALRSVRTFLEDTGLIEEISY 220
Query: 207 INLGGGFMKLFMENR--------LKEFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAY 258
+N+GGG + +E L E++ + S +EPG +I +
Sbjct: 221 LNIGGGLGIRYRRGEEVPSPHDLAEELQEDLKELHSE---SSGFDLYLEPGRSIVGEAGI 277
Query: 259 MITSPVNVSEVNEQQVITLDT---SIYTNTLWFVPH--IITTLNSSSKERYSTILYGNTC 313
++TS V ++ + +DT ++ L+ H ++ + S+ E+ S + G C
Sbjct: 278 LVTSVRQVKR-GRRRWVFVDTGMNALIRPALYDAYHEVVVHGGDYSATEKAS--VAGPLC 334
Query: 314 YEHDKYKMKVSLP-RLTQNSSIVFFPVGAYIKSNHSN 349
D LP +++ +VF GAY +S SN
Sbjct: 335 ESGDVLAEDRELPIDISEGDLVVFLSAGAYCESMASN 371
>gi|67923188|ref|ZP_00516676.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Crocosphaera watsonii WH 8501]
gi|67854974|gb|EAM50245.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Crocosphaera watsonii WH 8501]
Length = 404
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 38/379 (10%)
Query: 2 INKKIQQVVLESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLF-YAVKAN 60
I +K Q +L + L + SP VY LL + IP +N LF +A N
Sbjct: 4 IAQKQNQPFSATLAHSLLNCYGSPLYVYQSDLLRHGISHITTSIP--YNNTLFQFATVTN 61
Query: 61 SNEKILEFLVDKIDGVDVASLSELDVA-KKFFPPTQISVNGPAFSYETLYNLIK---KQY 116
N ++L+ D+ G+ + ++ + K F +I +G + E + ++K +
Sbjct: 62 GNIELLKLFNDQGWGIHANTPGDIYLGLKAGFSGEKIVYSGSNLNPEEMTQILKWGVRTL 121
Query: 117 KVD----INFLEHLQQFSPKE----SVGIRVTEPDELNNRMSRFGINICSDNWTSNLQNP 168
+D + L + + P + +G+R+ EP+ + + SR G+ +
Sbjct: 122 NLDSISQLELLYEIYKSFPGDLSSLKLGLRLNEPNLIKD--SRIGVQPQEFPEAIKIAKR 179
Query: 169 L---ITRLHFHFGEKDDKFIVKLDKILFKLQEINKLREVRE-INLGGGFMKLFMENRLK- 223
+ I LHF+ G + K++ + +I +L E ++ GGGF + +++
Sbjct: 180 VGLNIQGLHFYRGTGTNA-TRAFTKVIDDIIQIGQLLPNWEYLDFGGGFGYPYHHDKIAF 238
Query: 224 ---EFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTS 280
+F L + K + + IIEPG A+ + A ++ V+V ++Q+I +DT+
Sbjct: 239 NWHKFGQELTD--KLNQLSKPIQLIIEPGRAVIANCATLLAKVVSVKWQGDKQIIGVDTT 296
Query: 281 IYTNTLWFVPHI------ITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSI 334
+ + VP + I + S+ + T + GNT Y D LP L I
Sbjct: 297 VGNLS---VPSVHGGYRKIISWPEKSQTLWLTDVCGNTTYSRDYLGKNCQLPALEIGDII 353
Query: 335 VFFPVGAYIKSNHSN-LHR 352
VGAY + S+ LHR
Sbjct: 354 GILEVGAYGYAMSSHFLHR 372
>gi|20091552|ref|NP_617627.1| ornithine decarboxylase [Methanosarcina acetivorans C2A]
gi|19916709|gb|AAM06107.1| ornithine decarboxylase [Methanosarcina acetivorans C2A]
Length = 390
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 93/362 (25%), Positives = 151/362 (41%), Gaps = 59/362 (16%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P +V D +E +E +P ++ YAVKAN ++++ L DK DVA++ E
Sbjct: 31 TPFLVIDLQKIERSYEELVEHMPFA---KIHYAVKANPMDRVVLALKDKGSNFDVATIYE 87
Query: 84 LD-VAKKFFPPTQISVNGP-------AFSYETLYNLIKKQYKVDINFLEHLQQFSPKESV 135
LD V + P +IS A++YE L + D L+ L + +P V
Sbjct: 88 LDQVLRLGVEPERISYGNTIKKEKDIAYAYEKGVRLFVTDSESD---LKKLSREAPGSRV 144
Query: 136 GIRV-TEPDELNNRMSR-FGINICSDNWTSNLQNPLITR----------LHFHFGEKD-- 181
R+ TE D + +SR FG + +L LI + L FH G +
Sbjct: 145 FFRILTESDGADWPLSRKFGSH-------PDLIYKLILKAEKLGLEPYGLSFHVGSQQRD 197
Query: 182 ----DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLF--MENRLKEFFLSLMEIYKK 235
D I K K LF+ K +++ INLGGGF + N L+ + +
Sbjct: 198 IGQWDNAISKC-KYLFE-AAAEKGIQLKMINLGGGFPAKYQAQANDLETYAREIRRFLHD 255
Query: 236 YDIDSTVTTIIEPGSAITSFSAYMITSPVNVSE---VNEQQVITLDTSIYTNTLWFVPHI 292
+ +IEPG ++ + + +++ V +S+ N+ + + LD + + +
Sbjct: 256 DFGEELPEILIEPGRSLVADAGIIVSEVVMISKKARFNQYKWVYLDIGKFGGLIETLDEC 315
Query: 293 ITTLNSSSKE--RYSTILYGNTC------YEHDKYKMKVSLPR-LTQNSSIVFFPVGAYI 343
I K+ IL G TC YEH KY S P + + + F GAY
Sbjct: 316 IKYPIFCDKKGCAEEVILAGPTCDSMDILYEHHKY----SFPHTMREGNRAYIFTTGAYT 371
Query: 344 KS 345
+S
Sbjct: 372 QS 373
>gi|71734289|ref|YP_276391.1| decarboxylase, ornithine/DAP/arginine decarboxylase family 2
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554842|gb|AAZ34053.1| decarboxylase, ornithine/DAP/arginine decarboxylase family 2
[Pseudomonas syringae pv. phaseolicola 1448A]
Length = 387
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 92/385 (23%), Positives = 166/385 (43%), Gaps = 70/385 (18%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNY-QLFYAVKANSNEKILEFLVDKIDGVDVASLS 82
+P VV D ++ D+ + F + +++YAVKAN +++ L DK D+AS+
Sbjct: 26 TPFVVIDTAIISKAYDDLR----AGFEFAKVYYAVKANPAVEVINLLKDKGSSFDIASIY 81
Query: 83 ELD-VAKKFFPPTQISVNGPA-------FSYETLYNLIKKQYKVDINFLEHLQQFSPKES 134
ELD V P +IS + YE L + D L ++ + +P
Sbjct: 82 ELDKVMSCGVGPERISYGNTIKKSKDIRYFYEKGVRLFATDSEAD---LRNIAKAAPGAK 138
Query: 135 VGIRV-----TEPDELNNRMSRFGINICSDNWTSNLQNPLITR--------LHFHFGEKD 181
V +R+ T D +R +FG C + +L ++ R + FH G +
Sbjct: 139 VYVRILTEGSTTADWPLSR--KFG---CQTDMAMDLL--ILARDLGLVPYGISFHVGSQQ 191
Query: 182 ------DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIY 233
D I K+ I +L+E + + ++ IN+GGGF ++ N L+ + ++
Sbjct: 192 RDISVWDAAIAKVKVIFERLKEEDGI-VLKLINMGGGFPANYITRTNSLETYAEEIIRFL 250
Query: 234 KKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHII 293
K+ D I+EPG ++ S + +++ V V+ + V + +YT+ F +I
Sbjct: 251 KEDFGDDLPEIILEPGRSLISNAGILVSEVVLVARKSRTAV---ERWVYTDVGKF-SGLI 306
Query: 294 TTLNSSSK---------ERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFP 338
T++ + K E ++ G TC YE+ KY + ++ L + +
Sbjct: 307 ETMDEAIKFPIWTEKKGEMEEVVIAGPTCDSADIMYENYKYGLPLN---LAIGDRMYWLS 363
Query: 339 VGAYIKSNHSNLHRNDF--MREVYL 361
GAY S +S + N F ++ YL
Sbjct: 364 TGAYTTS-YSAVEFNGFPPLKSFYL 387
>gi|70734359|ref|YP_257999.1| pyridoxal-dependent decarboxylase, pyridoxal binding domain
[Pseudomonas fluorescens Pf-5]
gi|68348658|gb|AAY96264.1| pyridoxal-dependent decarboxylase, pyridoxal binding domain
[Pseudomonas fluorescens Pf-5]
Length = 387
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 92/382 (24%), Positives = 168/382 (43%), Gaps = 64/382 (16%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNY-QLFYAVKANSNEKILEFLVDKIDGVDVASLS 82
+P VV D ++ D+ + F + +++YAVKAN +I++ L +K D+AS+
Sbjct: 26 TPFVVIDTQMISQAYDDLR----AGFEFAKVYYAVKANPAVEIIDLLHEKGSSFDIASIY 81
Query: 83 ELD-VAKKFFPPTQISVNG---PAFSYETLYNLIKKQYKVDINF-LEHLQQFSPKESVGI 137
ELD V + P IS + Y+ + Y D L ++ + +P V +
Sbjct: 82 ELDKVLGRGVNPANISYGNTIKKSKDIRYFYDKGVRLYATDSEADLRNIAKAAPGSKVYV 141
Query: 138 RV-----TEPDELNNRMSRFGINICSDNWTSNLQNPLITR--------LHFHFGEKD--- 181
R+ T D +R +FG C + +L ++ R + FH G +
Sbjct: 142 RILTEGSTTADWPLSR--KFG---CQTDMAMDLL--ILARDLGLVPYGVSFHVGSQQRDI 194
Query: 182 ---DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIYKKY 236
D I K+ I +L+E + + E++ IN+GGGF ++ N L+ + ++ K+
Sbjct: 195 SVWDAAIAKVKVIFERLKEEDGI-ELKLINMGGGFPANYITRTNSLETYAEEIIRFLKED 253
Query: 237 DIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHIITTL 296
D I+EPG ++ + + +++ V V+ + V + +YT+ F +I T+
Sbjct: 254 FGDDLPEIILEPGRSLIANAGILVSEVVLVARKSRTAV---ERWVYTDVGKF-SGLIETM 309
Query: 297 NSSSK---------ERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFPVGA 341
+ S K E ++ G TC YE+ KY + ++ L + + GA
Sbjct: 310 DESIKFPIWTEKKGEVEEVVIAGPTCDSADIMYENYKYGLPLN---LAIGDRLYWLSTGA 366
Query: 342 YIKSNHSNLHRNDF--MREVYL 361
Y S +S + N F ++ YL
Sbjct: 367 YTTS-YSAVEFNGFPPLKAFYL 387
>gi|86133354|ref|ZP_01051936.1| diaminopimelate decarboxylase [Tenacibaculum sp. MED152]
gi|85820217|gb|EAQ41364.1| diaminopimelate decarboxylase [Polaribacter dokdonensis MED152]
Length = 414
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 88/373 (23%), Positives = 151/373 (40%), Gaps = 35/373 (9%)
Query: 18 LNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVD 77
L + SP VYD + + + N N +L YAVKA SN IL+F + G+D
Sbjct: 9 LANKYGSPLYVYDTDKIASQYNRLTNAFSNVKNLKLNYAVKALSNVNILKFFKNLGAGLD 68
Query: 78 VASLSELDVA-KKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFS---PKE 133
S E+ + P I S + + + K +++I+ L L+ F P+
Sbjct: 69 TVSYQEVQLGLTTGINPKNIIYTPNGVSLQEIEQVAKLGVQINIDNLSILEIFGQKHPEI 128
Query: 134 SVGIRVTEPDELNNRMSRFGI-NICSDNWTSNLQNPLITR-----------LHFHFGEK- 180
V +R+ P + S+ + +I S S Q P I R +H H G
Sbjct: 129 PVCVRIN-PHIMAGGNSKISVGHIDSKFGISIHQVPHIKRVVENTGMNINGIHMHTGSDI 187
Query: 181 -DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFME----NRLKEFFLSLMEIYKK 235
D ++ ILF + + + + I+ G GF + E +++ + L E + +
Sbjct: 188 LDIDTFLRASDILFDVAR--QFKNIDFIDFGSGFKVPYKEGDISTDIEQLGIQLSERFNE 245
Query: 236 Y--DIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFV---- 289
+ D +T + EPG + S A + + VNV + V S + + + +
Sbjct: 246 FCSDYGKDITLMFEPGKFLVS-EAGVFLAKVNVVKQTTSTVFAHVDSGFNHLVRPMMYDS 304
Query: 290 -PHIITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHS 348
HI N ++RY +++ G C E D + + +++ + F GAY S S
Sbjct: 305 YHHITNISNPEGRDRYYSVV-GYIC-ETDTFASNRRIAEISEEDVLCFHNAGAYCFSMAS 362
Query: 349 NLHRNDFMREVYL 361
N + EV L
Sbjct: 363 NYNSRYLPAEVML 375
>gi|62261067|gb|AAX77957.1| unknown protein [synthetic construct]
Length = 452
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 92/396 (23%), Positives = 166/396 (41%), Gaps = 65/396 (16%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 42 NKQIETIIQR---------YASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 85
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIK 113
Y+VK S I++ + +V S E + +K I NGP + +L ++
Sbjct: 86 YSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKSIIFNGPYKNDASLIKALQ 145
Query: 114 KQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC-----SDNW 161
++ + + + ++ + +G+RV + N SRFG + SD +
Sbjct: 146 LNAMINCDHFDEILRIAKIAKKLNITAKIGLRVADNKTPQN-WSRFGFALTDQQSNSDIF 204
Query: 162 TS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE-INLGG 211
T+ + N + LH H G +D + K + +L E + K + E I+LGG
Sbjct: 205 TTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEWIDLGG 264
Query: 212 GFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAITSFSAY 258
G + + RL+ + +E+Y K+Y + I E G ++ +S
Sbjct: 265 GLAGISPTLSDKRLQPYNPFDLELYAATIIAPLKEYLNKTNDKTKLIFELGRSLVDYSVA 324
Query: 259 MITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGNTCYEH 316
++T+ V E NE Q + D I+T T+ H I L + S + T+L G +C +H
Sbjct: 325 LLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGPSCMQH 383
Query: 317 DKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
D + LP+L ++ VGAY I N+ +H
Sbjct: 384 DFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 419
>gi|77457028|ref|YP_346533.1| Ornithine decarboxylase [Pseudomonas fluorescens PfO-1]
gi|77381031|gb|ABA72544.1| Ornithine decarboxylase [Pseudomonas fluorescens PfO-1]
Length = 387
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 68/377 (18%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNY-QLFYAVKANSNEKILEFLVDKIDGVDVASLS 82
+P VV D ++ D+ + F + +++YAVKAN +I++ L +K D+AS+
Sbjct: 26 TPFVVIDTAMIAQAYDDLR----AGFEFAKVYYAVKANPAVEIIDLLKEKGSSFDIASIY 81
Query: 83 ELD-VAKKFFPPTQISVNGPA-------FSYETLYNLIKKQYKVDINFLEHLQQFSPKES 134
ELD V + QIS + YE L + D L ++ + +P
Sbjct: 82 ELDKVLSRGVSADQISYGNTIKKSKDIRYFYEKGVRLFATDSEAD---LRNIAKAAPGAK 138
Query: 135 VGIRV-----TEPDELNNRMSRFGINICSDNWTSNLQNPLITR--------LHFHFGEKD 181
V +R+ T D +R +FG C + +L ++ R + FH G +
Sbjct: 139 VYVRILTEGSTTADWPLSR--KFG---CQTDMAMDLL--ILARDLGLVPYGISFHVGSQQ 191
Query: 182 ------DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFM--ENRLKEFFLSLMEIY 233
D I K+ I +L+E + + ++ IN+GGGF ++ N L+ + ++
Sbjct: 192 RDISVWDAAIAKVKVIFERLKEEDGI-HLKLINMGGGFPANYITRTNSLETYAEEIIRFL 250
Query: 234 KKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNTLWFVPHII 293
K+ D I+EPG ++ + + +++ V V+ + V + +YT+ F +I
Sbjct: 251 KEDFGDDLPEIILEPGRSLIANAGILVSEVVLVARKSRTAV---ERWVYTDVGKF-SGLI 306
Query: 294 TTLNSSSK---------ERYSTILYGNTC------YEHDKYKMKVSLPRLTQNSSIVFFP 338
T++ + K E ++ G TC YE+ KY + ++ L + +
Sbjct: 307 ETMDEAIKFPIWTEKKGEMEEVVIAGPTCDSADIMYENYKYGLPLN---LAIGDRLYWLS 363
Query: 339 VGAYIKSNHSNLHRNDF 355
GAY S +S + N F
Sbjct: 364 TGAYTTS-YSAVEFNGF 379
>gi|56707207|ref|YP_169103.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669677|ref|YP_666234.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
tularensis FSC198]
gi|56603699|emb|CAG44660.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320010|emb|CAL08043.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
tularensis FSC 198]
gi|151569662|gb|EDN35316.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
tularensis FSC033]
Length = 417
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 92/396 (23%), Positives = 166/396 (41%), Gaps = 65/396 (16%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 16 NKQIETII---------QRYASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 59
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIK 113
Y+VK S I++ + +V S E + +K I NGP + +L ++
Sbjct: 60 YSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKSIIFNGPYKNDASLIKALQ 119
Query: 114 KQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC-----SDNW 161
++ + + + ++ + +G+RV + N SRFG + SD +
Sbjct: 120 LNAMINCDHFDEILRIAKIAKKLNITAKIGLRVADNKTPQN-WSRFGFALTDQQSNSDIF 178
Query: 162 TS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE-INLGG 211
T+ + N + LH H G +D + K + +L E + K + E I+LGG
Sbjct: 179 TTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEWIDLGG 238
Query: 212 GFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAITSFSAY 258
G + + RL+ + +E+Y K+Y + I E G ++ +S
Sbjct: 239 GLAGISPTLSDKRLQPYNPFDLELYAATIIAPLKEYLNKTNDKTKLIFELGRSLVDYSVA 298
Query: 259 MITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGNTCYEH 316
++T+ V E NE Q + D I+T T+ H I L + S + T+L G +C +H
Sbjct: 299 LLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGPSCMQH 357
Query: 317 DKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
D + LP+L ++ VGAY I N+ +H
Sbjct: 358 DFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 393
>gi|54113955|gb|AAV29611.1| NT02FT1732 [synthetic construct]
Length = 417
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 92/396 (23%), Positives = 166/396 (41%), Gaps = 65/396 (16%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 16 NKQIETII---------QRYASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 59
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIK 113
Y+VK S I++ + +V S E + +K I NGP + +L ++
Sbjct: 60 YSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKSIIFNGPYKNDASLIKALQ 119
Query: 114 KQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC-----SDNW 161
++ + + + ++ + +G+RV + N SRFG + SD +
Sbjct: 120 LNAMINCDHFDEILRIAKIAKKLNITAKIGLRVADNKTPQN-WSRFGFALTDQQSNSDIF 178
Query: 162 TS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE-INLGG 211
T+ + N + LH H G +D + K + +L E + K + E I+LGG
Sbjct: 179 TTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEWIDLGG 238
Query: 212 GFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAITSFSAY 258
G + + RL+ + +E+Y K+Y + I E G ++ +S
Sbjct: 239 GLAGISPTLSDKRLQPYNPFDLELYAATIIAPLKEYLNKTNDKTKLIFELGRSLVDYSVA 298
Query: 259 MITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGNTCYEH 316
++T+ V E NE Q + D I+T T+ H I L + S + T+L G +C +H
Sbjct: 299 LLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGPSCMQH 357
Query: 317 DKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
D + LP+L ++ VGAY I N+ +H
Sbjct: 358 DFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 393
>gi|85712875|ref|ZP_01043917.1| Carboxynorspermidine decarboxylase [Idiomarina baltica OS145]
gi|85693339|gb|EAQ31295.1| Carboxynorspermidine decarboxylase [Idiomarina baltica OS145]
Length = 380
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 77/333 (23%), Positives = 138/333 (41%), Gaps = 45/333 (13%)
Query: 11 LESLQNFLNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLV 70
+ ++ +L + SPC V D LL L E ++ V + A+K S +
Sbjct: 1 MSNMNKYLREDIPSPCYVLDEALLRNNL-ELMKRVQVESGASIILALKGYSMWSAFPLIK 59
Query: 71 DKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFS 130
+ G +S+ E +A F +++ PA+ E + L+ + N + + ++
Sbjct: 60 QYLKGCTASSVWEAQLAADKFG-SEVHAYAPAYKAEDIKQLLPIVNHISFNSISQWEAYA 118
Query: 131 PKE-----SVGIRVT-EPDELNNRM-------SRFGINICSDNWTSNLQNPL---ITRLH 174
+ SVG+RV E E + + SR G+ S L+N + +H
Sbjct: 119 DQAKAAGVSVGLRVNPEHQEADTELYDPSAPGSRLGVR------ASELENVSLDDVEGIH 172
Query: 175 FHFGEKDDKFIVKLDKILFKLQEINK----LREVREINLGGGFMKLFMENRLKEFFLSLM 230
H + D + L++ L ++ NK L +V+ +NLGGG + + L
Sbjct: 173 VHNLCECDSY--ALERTLAAVE--NKFGDLLHQVKWLNLGGGHLMTREGYDVDHLISQLQ 228
Query: 231 EIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNT----- 285
+ Y++D I+EPGSA+ + ++ V++ E N+ + LD S +
Sbjct: 229 RLKATYNLD----IILEPGSAVAWQTGPLVCEVVDIVE-NQGSIALLDISATAHMPDVLE 283
Query: 286 LWFVPHII-TTLNSSSKERYSTILYGNTCYEHD 317
+ + PHI L + RY L GN+C D
Sbjct: 284 MPYRPHIEGAGLPADKPYRYR--LGGNSCLAGD 314
>gi|89257094|ref|YP_514456.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica]
gi|115315451|ref|YP_764174.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica OSU18]
gi|156503308|ref|YP_001429373.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica FTA]
gi|89144925|emb|CAJ80273.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica LVS]
gi|115130350|gb|ABI83537.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica OSU18]
gi|134254137|gb|EBA53231.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica 257]
gi|156253911|gb|ABU62417.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica FTA]
gi|157121882|gb|EDO66052.1| diaminopimelate decarboxylase [Francisella tularensis subsp.
holarctica FSC022]
Length = 417
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 92/396 (23%), Positives = 166/396 (41%), Gaps = 65/396 (16%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 16 NKQIETII---------QRYASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 59
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIK 113
Y+VK S I++ + +V S E + +K I NGP + +L ++
Sbjct: 60 YSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKSIIFNGPYKNDASLIKALQ 119
Query: 114 KQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC-----SDNW 161
++ + + + ++ + +G+RV + N SRFG + SD +
Sbjct: 120 LNAMINCDHFDEILRIAKIAKKLNITAKIGLRVADNKTPQN-WSRFGFALTDQQSNSDIF 178
Query: 162 TS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE-INLGG 211
T+ + N + LH H G +D + K + +L E + K + E I+LGG
Sbjct: 179 TTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEWIDLGG 238
Query: 212 GFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAITSFSAY 258
G + + RL+ + +E+Y K+Y + I E G ++ +S
Sbjct: 239 GLAGISPTLSDKRLQPYNPFDLELYAATIIVPLKEYLNKTNDKTKLIFELGRSLVDYSVA 298
Query: 259 MITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGNTCYEH 316
++T+ V E NE Q + D I+T T+ H I L + S + T+L G +C +H
Sbjct: 299 LLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGPSCMQH 357
Query: 317 DKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
D + LP+L ++ VGAY I N+ +H
Sbjct: 358 DFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 393
>gi|151572771|gb|EDN38425.1| hypothetical protein FTDG_01241 [Francisella tularensis subsp.
novicida GA99-3548]
Length = 416
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 92/396 (23%), Positives = 166/396 (41%), Gaps = 65/396 (16%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 16 NKQIETII---------QRYASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 59
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIK 113
Y+VK S I++ + +V S E + +K I NGP + +L ++
Sbjct: 60 YSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKSIIFNGPYKNDASLIKALQ 119
Query: 114 KQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC-----SDNW 161
++ + + + ++ + +G+RV + N SRFG + SD +
Sbjct: 120 LNAMINCDHFDEILRIAKIAKKLNITAKIGLRVADNKTPQN-WSRFGFALTDLQSNSDIF 178
Query: 162 TS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE-INLGG 211
T+ + N + LH H G +D + K + +L E + K + E I+LGG
Sbjct: 179 TTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEWIDLGG 238
Query: 212 GFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAITSFSAY 258
G + + RL+ + +E+Y K+Y + I E G ++ +S
Sbjct: 239 GLAGISPTLSDKRLQPYNPFDLELYAATIIAPLKEYLNKTNDKTKLIFELGRSLVDYSVA 298
Query: 259 MITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGNTCYEH 316
++T+ V E NE Q + D I+T T+ H I L + S + T+L G +C +H
Sbjct: 299 LLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGPSCMQH 357
Query: 317 DKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
D + LP+L ++ VGAY I N+ +H
Sbjct: 358 DFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 393
>gi|154150589|ref|YP_001404207.1| Orn/DAP/Arg decarboxylase 2 [Candidatus Methanoregula boonei 6A8]
gi|153999141|gb|ABS55564.1| Orn/DAP/Arg decarboxylase 2 [Candidatus Methanoregula boonei 6A8]
Length = 397
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 82/353 (23%), Positives = 147/353 (41%), Gaps = 44/353 (12%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P V D + EFK P Q ++AVKANSN I++ L+D DVAS+ E
Sbjct: 34 TPLFVIDHAKIRENYREFKKNFP---KIQAYFAVKANSNPGIVKTLMDLGASFDVASMPE 90
Query: 84 LDVAKKF-----------FPPTQISVNGPAFSYETLYNLIKKQYKVDINF-----LEHLQ 127
+ F F +I ETL L QYK + F L+ ++
Sbjct: 91 FMIVHNFIKDMPDKERQDFIWDRIIYANTIKPIETLEEL--NQYKPLVTFDNIEELKKIR 148
Query: 128 QFSPKESVGIRVTEPD--ELNNRMSRFG------INICSDNWTSNLQNPLITRLHFHFGE 179
Q +P+ + +R+ P+ + S+FG +++ + L ++ L FH G
Sbjct: 149 QHAPQAGLVLRLRVPNTGSMVELSSKFGADPGEAVDLIKAAFDLGL---VVEGLSFHVGS 205
Query: 180 KDDKF-----IVKLDKILFKLQEINKLREVREINLGGGF-MKLFMENR-LKEFFLSL-ME 231
+ F +++ + + E R++R +++GGGF +K E R ++E + L E
Sbjct: 206 QCTNFENYVVALQISANIIEETEHRTGRKIRILDIGGGFPVKYNPEVRSIEELAVKLKAE 265
Query: 232 IYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIY-TNTLWFVP 290
I + + D + + EPG + + + ++ V + + + ++ +Y T +
Sbjct: 266 IARLFPDDMEI--LAEPGRFLVANACTLVAKVVGKAYRDGKPCYYINDGVYHTYSGQVFD 323
Query: 291 HII-TTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
H L R + ++G TC D + LP L + +GAY
Sbjct: 324 HCTYPVLAFKEGPRQISAVFGPTCDAFDTITLSAELPELDIGDLVYSVNIGAY 376
>gi|109672761|ref|ZP_01374996.1| diaminopimelate decarboxylase [Campylobacter concisus 13826]
gi|112801631|gb|EAT98975.1| diaminopimelate decarboxylase [Campylobacter concisus 13826]
Length = 407
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 93/381 (24%), Positives = 158/381 (41%), Gaps = 53/381 (13%)
Query: 18 LNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVD 77
L + +P VYDF ++ + KN + + YAVKANSN +L+FL D G D
Sbjct: 6 LASKYKTPLYVYDFNYIKERYEALKNAFYARKSL-VCYAVKANSNLSVLKFLADLGAGFD 64
Query: 78 VASLSE-----LDVAKKFFPPTQISVNGPAFSYETLYN-------LIKKQYKVDINFLEH 125
S+ E L AK++ QI +G S E L LI + ++ LE
Sbjct: 65 CVSIGEVKRALLAGAKRY----QIIFSGVGKSDEELKEALENEILLINVESFAELLRLEE 120
Query: 126 LQQ-FSPKESVGIRV-------TEP---DELNNRMSRFGINICSDNW------TSNLQNP 168
+ + + K + IRV T P LN ++FG++ + S P
Sbjct: 121 IAKGLNLKARISIRVNPGVDAKTHPYISTGLNE--NKFGVDAVTAKKMYIHAKASEFLEP 178
Query: 169 LITRLHFHFGEKDDKF--IVKLDKILFKL-QEINKLR-EVREINLGGGFMKLFMENR--- 221
T +HFH G + I+ KI+ +L +E+ L +++ ++GGG ++ + +
Sbjct: 179 --TGIHFHIGSQLTSLSPIIDAAKIVSELLRELRALEIDIKFFDVGGGLGIIYNDEKEIN 236
Query: 222 LKEFFLSLMEIYKKYDIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLD--- 278
L ++ ++ K D VT + EPG I + Y + S + +++ + D
Sbjct: 237 LYDYAQGILGALKGQD----VTIVCEPGRFIVGNAGYFVASVLYEKFNGKKRFVITDGAM 292
Query: 279 TSIYTNTLWFVPHIITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFP 338
+ +L+ H I ++ + + + G C D ++LP IV
Sbjct: 293 NDLIRPSLYGAHHKIF-VDGKDENLGTCDVVGPVCESGDFLAKDINLPECESGDVIVVKG 351
Query: 339 VGAYIKSNHSNLHRNDFMREV 359
GAY S SN + + EV
Sbjct: 352 AGAYGFSMSSNYNTRNRAAEV 372
>gi|66825991|ref|XP_646350.1| hypothetical protein DDBDRAFT_0190621 [Dictyostelium discoideum
AX4]
gi|60474341|gb|EAL72278.1| hypothetical protein DDBDRAFT_0190621 [Dictyostelium discoideum
AX4]
Length = 421
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 154/350 (44%), Gaps = 54/350 (15%)
Query: 35 ETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPP 93
E +++ FK P NY+ ++AVKA N IL+ L + GVD +SL+EL +++K F
Sbjct: 42 ELLMNSFKKYFP---NYRNYFAVKATPNPSILKLLKEIGMGVDCSSLAELILSEKVGFKN 98
Query: 94 TQISVNGPAFSYETLYNLIKKQYKVD--INFLEHLQQFSPKESVGIRVTE-------PDE 144
+I S T KK Y++ IN ++ Q ES+G + E P
Sbjct: 99 EEIMFT----SNNTKSEEYKKAYELGSIINLDDYTQIEYLYESLGGVMPELISFRYNPGP 154
Query: 145 L--------NNRMSRFGINICSDNWTSNLQNPL-ITRLHFH----FGEKDDKFIVKLDKI 191
L N + ++FG+ N L + R H E D + + ++
Sbjct: 155 LKKGNDIIGNPKDAKFGLTSDDLEKAYNKAKELGVKRFGLHCMVASNELDLDYFEETARL 214
Query: 192 LFKLQEINKLRE-----VREINLGGGFMKLFMENRLKEFFLSLME----IYKKYDIDS-- 240
LF I+KL + +NLGGG + N++ +L L E YK+ ++
Sbjct: 215 LF--STISKLTKSCGITFEMVNLGGGIGIPYRPNQIAVDYLKLTEKISNAYKELIVEEEG 272
Query: 241 --TVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLD---TSIYTNTLWFVPHIITT 295
+ + E G IT ++T ++ S+ ++ I +D ++ ++ H IT
Sbjct: 273 LPKLNVVTECGRVITGPYGVLVTKAIH-SKSTYKEYIGVDACMVNLMRPGMYGAYHHITV 331
Query: 296 LNSS---SKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
LN + S E Y + G+ C +DK+ + SLP++ + ++V GA+
Sbjct: 332 LNPTDPNSTETYDVV--GSLCENNDKFCIDRSLPKIHRGDTLVIHDTGAH 379
>gi|151571310|gb|EDN36964.1| hypothetical protein FTCG_01683 [Francisella tularensis subsp.
novicida GA99-3549]
Length = 416
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 75/401 (18%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 16 NKQIETII---------QRYASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 59
Query: 55 YAVKANSNEKILE------FLVDKIDGVDVASLSELDVAKKFFPPTQISVNGPAFSYETL 108
Y+VK S I++ F+ + + + + L + K I NGP + +L
Sbjct: 60 YSVKTQSLNTIIQKFCEVGFIPEVVSSDEFEQIQTLQLCDK-----SIIFNGPYKNDASL 114
Query: 109 YNLIKKQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC---- 157
++ ++ + + + ++ + +G+RV + N SRFG +
Sbjct: 115 IKALQLNAMINCDHFDEILRIAKIAKKLNITAKIGLRVADNKTPQN-WSRFGFALTDQQN 173
Query: 158 -SDNWTS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE- 206
SD +T+ + N + LH H G +D + K + +L E + K + E
Sbjct: 174 NSDIFTTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEW 233
Query: 207 INLGGGFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAIT 253
I+LGGG + + RL+ + +E+Y K+Y ++ I E G ++
Sbjct: 234 IDLGGGLAGISPTLSDKRLQPYNPFDLELYAATIIAPLKEYLNKTNNKTKLIFELGRSLV 293
Query: 254 SFSAYMITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGN 311
+S ++T+ V E NE Q + D I+T T+ H I L + S + T+L G
Sbjct: 294 DYSVALLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGP 352
Query: 312 TCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
+C +HD + LP+L ++ VGAY I N+ +H
Sbjct: 353 SCMQHDFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 393
>gi|118498245|ref|YP_899295.1| pyridoxal-dependent decarboxylase [Francisella tularensis subsp.
novicida U112]
gi|95045105|gb|ABF50970.1| FigC [Francisella tularensis subsp. novicida]
gi|118424151|gb|ABK90541.1| pyridoxal-dependent decarboxylase [Francisella tularensis subsp.
novicida U112]
Length = 417
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 91/396 (22%), Positives = 166/396 (41%), Gaps = 65/396 (16%)
Query: 3 NKKIQQVVLESLQNFLNGNFISPCVVYDFGLL--------ETVLDEFKNQIPVTFNYQLF 54
NK+I+ ++ + SPC + D L + +L++++N I
Sbjct: 16 NKQIETII---------QRYASPCFIIDENALLERARLFQQAILNQYQNSIAA------- 59
Query: 55 YAVKANSNEKILEFLVDKIDGVDVASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIK 113
Y+VK S I++ + +V S E + +K I NGP + +L ++
Sbjct: 60 YSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKSIIFNGPYKNDASLIKALQ 119
Query: 114 KQYKVDINFLEHL-------QQFSPKESVGIRVTEPDELNNRMSRFGINIC-----SDNW 161
++ + + + ++ + +G+R+ + N SRFG + SD +
Sbjct: 120 LNAMINCDHFDEILRIAKIAKKLNITAKIGLRIADNKTPQN-WSRFGFALTDQQNNSDIF 178
Query: 162 TS-----NLQNPLITRLHFHFGE--KDDKFIVKLDKILFKLQE--INKLREVRE-INLGG 211
T+ + N + LH H G +D + K + +L E + K + E I+LGG
Sbjct: 179 TTIDKIQQIANIQLAGLHCHIGTNIRDISRFTAMAKNIAELAETILTKYKLTLEWIDLGG 238
Query: 212 GFMKL---FMENRLKEFFLSLMEIY--------KKY--DIDSTVTTIIEPGSAITSFSAY 258
G + + RL+ + +E+Y K+Y + I E G ++ +S
Sbjct: 239 GLAGISPTLSDKRLQPYNPFDLELYAATIIAPLKEYLNKTNDKTKLIFELGRSLVDYSVA 298
Query: 259 MITSPVNVSEVNEQ-QVITLDTSIYT-NTLWFVPHIITTLNSSSKERYSTILYGNTCYEH 316
++T+ V E NE Q + D I+T T+ H I L + S + T+L G +C +H
Sbjct: 299 LLTTIVGTREQNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHK-KTLLLGPSCMQH 357
Query: 317 DKYKMKVSLPRLTQNSSIVFFPVGAY-IKSNHSNLH 351
D + LP+L ++ VGAY I N+ +H
Sbjct: 358 DFLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIH 393
>gi|149280434|ref|ZP_01886554.1| diaminopimelate decarboxylase [Pedobacter sp. BAL39]
gi|149228848|gb|EDM34247.1| diaminopimelate decarboxylase [Pedobacter sp. BAL39]
Length = 384
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 87/363 (23%), Positives = 151/363 (41%), Gaps = 40/363 (11%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
+P YD LL+ L V +N+ + YA+KAN N ++LE + G D S E
Sbjct: 15 TPFYYYDLALLQNTLSNCSAAAKV-YNFHVHYAMKANFNPRVLEMIKATGFGADCVSGGE 73
Query: 84 LDVAKKF-FPPTQISVNGPAFSYETLYNLIKKQ---YKVD-INFLEHLQQFS----PKES 134
+ A + F QI G S + + + +Q + V+ I LE + + + K
Sbjct: 74 VKRAVEVGFNHQQIVFAGVGKSDREINDALDQQIFCFNVESIQELEVINELAGLKNTKAK 133
Query: 135 VGIRVTEPDELNNRM--------SRFGINI-----CSDNWTSNLQNPLITRLHFHFGEKD 181
V IR+ + + ++FGIN C++ + +N +HFH G +
Sbjct: 134 VAIRINPNVDAHTHHNITTGLDENKFGINSWDLPQCAEVLKQS-ENLEFIGVHFHIGSQI 192
Query: 182 DKFIVKLDKILFKLQEINKLRE-----VREINLGGGFMKLFMENRLKEF--FLSLMEIYK 234
V + ++ E E V+ +N+GGG + + N ++ F + ++Y
Sbjct: 193 TSMDV-FKNLCVRVNEFAAWFEERGFIVKVLNVGGG-LGIDYHNPEQQIPDFEAYFKVYH 250
Query: 235 KY-DIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLD---TSIYTNTLWFVP 290
+ ++ S E G A+ A +I+ + V ++ I LD T + L+
Sbjct: 251 DFLEVRSNQEVHFELGRALVGQCASLISKVLYVKNGKKKNFIVLDAGMTELMRPALYQAY 310
Query: 291 HIITTLN-SSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY--IKSNH 347
H I L+ S S E + G C D + +V+LP + I GAY + ++H
Sbjct: 311 HQIDHLSGSKSAEGVKYDVVGPICESTDCFGKEVALPETFRGDLIALRSAGAYGEVMASH 370
Query: 348 SNL 350
NL
Sbjct: 371 YNL 373
>gi|56461100|ref|YP_156381.1| Carboxynorspermidine decarboxylase [Idiomarina loihiensis L2TR]
gi|56180110|gb|AAV82832.1| Carboxynorspermidine decarboxylase [Idiomarina loihiensis L2TR]
Length = 377
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 35/315 (11%)
Query: 24 SPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVASLSE 83
SPC V D LL L E ++ + A+K + + + G +S+ E
Sbjct: 11 SPCYVLDEKLLRKNL-ELMQKVQEQSGADIILALKGYAMWSAFPLIRQYLKGCTASSVWE 69
Query: 84 LDVAKKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSPKE-----SVGIR 138
+A + F ++ PA+ E + L+ + N + ++ + SVG+R
Sbjct: 70 AKLAAEEFS-REVHAYAPAYKQEDIDELLPLVNHLSFNSVSQWHKYREQTADAGVSVGLR 128
Query: 139 VT-EPDELNNRM-------SRFGINICSDNWTSNLQNPL--ITRLHFHFGEKDDKFIVK- 187
+ E E + SR GI N Q L + LH H + D F ++
Sbjct: 129 INPEHQEAETELYDPSAPGSRLGIRASELN-----QQDLTGVEGLHVHNLCECDSFALER 183
Query: 188 -LDKILFKLQEINKLREVREINLGGGFMKLFMENRLKEFFLSLMEIYKKYDIDSTVTTII 246
LD + + E +L++++ +NLGGG + + L + + YD+ I+
Sbjct: 184 TLDAVENRFGE--QLKQMKWLNLGGGHLMTRQGYDVDHLIKQLKRLRETYDLQ----VIL 237
Query: 247 EPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTNT--LWFVPH--IITTLNSSSKE 302
EPGSA+ + ++ V++ E N+ Q+ LD S + + +P+ +IT +++
Sbjct: 238 EPGSAVAWQTGPLVCEVVDIVE-NQGQIALLDISATAHMPDVLEMPYRPVITGAGLPAEK 296
Query: 303 RYSTILYGNTCYEHD 317
+S L GN+C D
Sbjct: 297 AFSYRLGGNSCLAGD 311
>gi|88806142|ref|ZP_01121660.1| diaminopimelate decarboxylase [Robiginitalea biformata HTCC2501]
gi|88783751|gb|EAR14922.1| diaminopimelate decarboxylase [Robiginitalea biformata HTCC2501]
Length = 420
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 90/371 (24%), Positives = 151/371 (40%), Gaps = 36/371 (9%)
Query: 21 NFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVDVAS 80
+F +P VYD G +++ + V +L YA KA SN IL L + G+D S
Sbjct: 12 DFGAPVYVYDAGKIQSQFKRLTHAFRVVPKLKLNYAAKALSNLSILRLLNNLGSGLDTVS 71
Query: 81 LSELDVA-KKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFSPKE---SVG 136
+ E+ + + P I S E + +++I+ L L+QF K V
Sbjct: 72 IQEVQLGLLAGYRPEDIIYTPNGVSLEEIEEAASLGVQINIDNLSILEQFGSKHPDIPVC 131
Query: 137 IRVTEPDEL---NNRM------SRFGINICSDNW---TSNLQNPLITRLHFHFGEK--DD 182
IR+ P + N+++ S+FGI+I L I +H H G D
Sbjct: 132 IRIN-PHVMAGGNSKISVGHIDSKFGISIHQIPHLLRIVELTKMKINGIHMHTGSDILDI 190
Query: 183 KFIVKLDKILFKLQEINKLREVREINLGGGFMKLF----MENRLKEFFLSLMEIYKKY-- 236
+ +ILF +++ I+ G GF + +E ++E L ++++
Sbjct: 191 DVFLYASEILF--DTAMHFKDLEFIDFGSGFKVPYKEGDIETNVEELGEKLGGRFREFCD 248
Query: 237 DIDSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTSIYTN----TLWFVPHI 292
+T EPG + S + Y + VNV + V S + + L+ H
Sbjct: 249 AYGRELTLAFEPGKFLVSEAGYFLAR-VNVVKQTTSTVFAGVDSGFNHLIRPMLYGANHH 307
Query: 293 ITTL-NSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAYIKSNHSNLH 351
I L N KERY +++ G C E D + + +++ + F GAY + SN +
Sbjct: 308 IENLSNPGGKERYYSVV-GYIC-ETDTFASNRRIREISEGDILCFRNAGAYCFTMASN-Y 364
Query: 352 RNDFMREVYLW 362
+ F LW
Sbjct: 365 NSRFRPAEVLW 375
>gi|126661847|ref|ZP_01732846.1| diaminopimelate decarboxylase [Flavobacteria bacterium BAL38]
gi|126625226|gb|EAZ95915.1| diaminopimelate decarboxylase [Flavobacteria bacterium BAL38]
Length = 401
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 86/367 (23%), Positives = 147/367 (40%), Gaps = 47/367 (12%)
Query: 18 LNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVD 77
L F SP VYD + + +N +++ YAVKA SN +L +L G+D
Sbjct: 9 LATEFGSPLYVYDAEKIAFQYNRLQNAFKKVERFKVHYAVKALSNISVLNYLKSLGSGLD 68
Query: 78 VASLSELDVA-KKFFPPTQISVNGPAFSYETLYNLIKKQYKVDINFLEHLQQFS---PKE 133
S+ E+ + F P I S E + + +++I+ L L+QF P
Sbjct: 69 TVSIQEVLLGLHAGFDPRDIIYTPNGVSMEEIETVANFGVQINIDNLSILEQFGTKHPNV 128
Query: 134 SVGIRV--------TEPDELNNRMSRFGINICSDNWTSNLQNPLITR-----------LH 174
V IR+ + + S+FGI+I Q P I R +H
Sbjct: 129 PVCIRINPHVMAGGNANISVGHIDSKFGISI--------HQLPHILRIIENTKMHINGIH 180
Query: 175 FHFGEK--DDKFIVKLDKILFKLQEINKLREVREINLGGGFMKLF----MENRLKEFFLS 228
H G D + + +ILF+ + +++ I+ G GF + +E ++EF
Sbjct: 181 MHTGSDILDVEVFLYAAEILFETAK--NFKDLDFIDFGSGFKVPYKKDDIETNVEEFGTK 238
Query: 229 LMEIYKKYDID--STVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTS---IYT 283
L + + ++ + +T EPG + S + Y + V + +D+ +
Sbjct: 239 LTKRFLAFEKEYGRPLTLAFEPGKFLVSEAGYFLAKVNVVKQTTSTVFAGIDSGFNHLIR 298
Query: 284 NTLWFVPHIITTL-NSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPVGAY 342
L+ H I + N KERY +++ G C E D + + + + + F GAY
Sbjct: 299 PMLYGSQHHIENISNPKGKERYYSVV-GYIC-ETDTFASNRRISEIHEGDILCFRNAGAY 356
Query: 343 IKSNHSN 349
S SN
Sbjct: 357 CFSMASN 363
>gi|42523266|ref|NP_968646.1| hypothetical protein Bd1777 [Bdellovibrio bacteriovorus HD100]
gi|39575471|emb|CAE79639.1| lysA [Bdellovibrio bacteriovorus HD100]
Length = 391
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 73/363 (20%), Positives = 150/363 (41%), Gaps = 48/363 (13%)
Query: 18 LNGNFISPCVVYDFGLLETVLDEFKNQIPVTFNYQLFYAVKANSNEKILEFLVDKIDGVD 77
L N++ P VYD L++V ++ +LF+AVK+N N +L+ L G D
Sbjct: 20 LVANYMRPIYVYD---LDSVAQRYQAMSQALKGTRLFFAVKSNPNPGVLQKLKSLGAGAD 76
Query: 78 VASLSELDVAKKF-FPPTQISVNGPAFSYETLYNLIKKQ-YKVDINFLEHLQ-------Q 128
V SL E+ A + F P I +G + L +K Y++++ L L+ +
Sbjct: 77 VVSLGEIKRALECGFSPQDIVYSGVGKTKFELAEALKLGIYQINVESLPELERIGVLARE 136
Query: 129 FSPKESVGIRVTEPDELNN--------RMSRFGIN--------ICSDNWTSNLQNPLITR 172
+ K V +R+ ++N + ++FG+ C +++ ++ +
Sbjct: 137 LNKKAQVALRLNPDVDINTHPYIATGLKDNKFGMERSMVPALVKCLKSYSDSID---LVG 193
Query: 173 LHFHFGEKD------DKFIVKLDKILFKLQEINKLREVREINLGGGFMKLFMENRLKEFF 226
+ H G + D+ + +L + +LQ + +++ + GGG + +F + +
Sbjct: 194 VSLHLGSQMLEFSGYDEALKRLKTVYLELQA--QFPTLKKFDFGGG-LGIFYDRVDLQLE 250
Query: 227 LSLMEIYKKYDI----DSTVTTIIEPGSAITSFSAYMITSPVNVSEVNEQQVITLDTS-- 280
SL++ Y + + D EPG + + +IT + E + + + +D
Sbjct: 251 ESLLQKYAQITLENLSDLNCELQAEPGRWLVAHCGALITQVQYIKETSAKTFVIVDAGMN 310
Query: 281 -IYTNTLWFVPHIITTLNSSSKERYSTILYGNTCYEHDKYKMKVSLPRLTQNSSIVFFPV 339
+ +L+ H I L + + G C D + ++SL ++ + +
Sbjct: 311 HLIRPSLYEATHRIEPLKRKDAA-FVVDVVGPICESSDFFAKEISLTKVQEGDFVAIMDS 369
Query: 340 GAY 342
GAY
Sbjct: 370 GAY 372
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,305,029,586
Number of Sequences: 5470121
Number of extensions: 54139182
Number of successful extensions: 136480
Number of sequences better than 1.0e-05: 100
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 136401
Number of HSP's gapped (non-prelim): 106
length of query: 368
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 234
effective length of database: 1,161,091,510
effective search space: 271695413340
effective search space used: 271695413340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)