BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'D05H05.seq'
        (406 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 13 Sequences     : less than 13 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 3919 769 |===========================================================
   6310 3150 551 |==========================================
   3980 2599 498 |======================================
   2510 2101 490 |=====================================
   1580 1611 357 |===========================
   1000 1254 237 |==================
    631 1017 220 |================
    398  797 152 |===========
    251  645 144 |===========
    158  501  70 |=====
    100  431  96 |=======
   63.1  335  70 |=====
   39.8  265  54 |====
   25.1  211  29 |==
   15.8  182  34 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 148  <<<<<<<<<<<<<<<<<
   10.0  148  25 |=
   6.31  123  14 |=
   3.98  109  13 |=
   2.51   96  10 |:
   1.58   86   2 |:
   1.00   84   3 |:
   0.63   81   1 |:
   0.40   80   1 |:
   0.25   79   6 |:
   0.16   73   4 |:
   0.10   69   1 |:
  0.063   68   1 |:
  0.040   67   0 |
  0.025   67   3 |:
  0.016   64   1 |:
  0.010   63   1 |:
 0.0063   62   1 |:
 0.0040   61   0 |
 0.0025   61   0 |
 0.0016   61   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|3608481|gb|AAD13388.1|(AF088913) ribosomal protein... +1   633  6.3e-61   1
gi|9295692|gb|AAF86998.1|AC005292_7(AC005292) F26F24.... +1   626  3.5e-60   1
gi|1710530|sp|P49637|RL2A_ARATH60S RIBOSOMAL PROTEIN ... +1   623  7.2e-60   1
gi|7959355|dbj|BAA96068.1|(AB042856) 60S ribosomal pr... +1   620  1.5e-59   1
gi|11546004|gb|AAG37952.1|(AC087079) Hypothetical pro... +1   271  9.9e-47   2
gi|3122699|sp|O01358|RL2A_OSCBR60S RIBOSOMAL PROTEIN ... +1   491  7.0e-46   1
gi|132846|sp|P18445|RL2A_RAT60S RIBOSOMAL PROTEIN L27... +1   486  2.4e-45   1
gi|4506625ref|NP_000981.1| ribosomal protein L27a [Ho... +1   482  6.3e-45   1
gi|1350711|sp|P48160|RL2A_DICDI60S RIBOSOMAL PROTEIN ... +1   480  1.0e-44   1
gi|4760604|dbj|BAA77362.1|(AB020237) ribosomal protei... +1   479  1.3e-44   1
gi|1350712|sp|P47830|RL2A_XENLA60S RIBOSOMAL PROTEIN ... +1   478  1.7e-44   1
gi|6321335ref|NP_011412.1| Ribosomal protein L28 (L29... +1   477  2.1e-44   1
gi|132847|sp|P02406|RL28_YEAST60S RIBOSOMAL PROTEIN L... +1   475  3.5e-44   1
gi|132844|sp|P14115|RL2A_MOUSE60S RIBOSOMAL PROTEIN L... +1   473  5.6e-44   1
gi|2500272|sp|Q94530|RL2B_DROME60S RIBOSOMAL PROTEIN ... +1   470  1.2e-43   1
gi|10727335|gb|AAF51006.2|(AE003576) RpL27A gene prod... +1   470  1.2e-43   1
gi|730551|sp|P41092|RL2A_DROME60S RIBOSOMAL PROTEIN L... +1   469  1.5e-43   1
gi|5921511|emb|CAB56512.1|(AJ249749) putative 60S rib... +1   466  3.1e-43   1
gi|132845|sp|P08978|RL28_NEUCR60S RIBOSOMAL PROTEIN L... +1   460  1.3e-42   1
gi|2500274|sp|P78987|RL2A_ERYGR60S RIBOSOMAL PROTEIN ... +1   455  4.6e-42   1
gi|1710529|sp|P36585|R28A_SCHPO60S RIBOSOMAL PROTEIN ... +1   445  5.2e-41   1
gi|400993|sp|Q00454|RL2A_TETTH60S RIBOSOMAL PROTEIN L... +1   443  8.5e-41   1
gi|540075|gb|AAA73459.1|(U13207) large subunit riboso... +1   443  8.5e-41   1
gi|1350705|sp|P48161|RL2A_EUPCR60S RIBOSOMAL PROTEIN ... +1   443  8.5e-41   1
gi|12230515|sp|P57728|R28B_SCHPO60S RIBOSOMAL PROTEIN... +1   441  1.4e-40   1
gi|161844|gb|AAA30125.1|(M76719) rpL29 [Tetrahymena t... +1   426  5.4e-39   1
gi|2500273|sp|Q27021|RL2A_TENMO60S RIBOSOMAL PROTEIN ... +1   425  6.9e-39   1
gi|1263104|emb|CAA65760.1|(X97045) ORF [Bos taurus]      +1   414  1.0e-37   1
gi|12584634|emb|CAC27402.1|(AJ305223) 60S ribosomal p... +1   411  2.1e-37   1
gi|10178306|emb|CAC08391.1|(AL121886) dJ1028D15.2 (si... +1   383  1.9e-34   1
gi|10305197|gb|AAG16278.1|AC016024_1(AC016024) Riboso... +1   381  3.2e-34   1
gi|10305199|gb|AAG16280.1|AC016024_3(AC016024) riboso... +1   381  3.2e-34   1
gi|11136707|gb|AAG31288.1|AC009805_1(AC009805) Riboso... +1   381  3.2e-34   1
gi|6094046|sp|O15883|RL2A_TRYBB60S RIBOSOMAL PROTEIN ... +1   377  8.4e-34   1
gi|12580751|emb|CAC27069.1|(AJ010592) 60S ribosomal p... +1   365  1.6e-32   1
gi|7674267|sp|O62581|RL2A_ENCCU60S RIBOSOMAL PROTEIN ... +1   318  1.5e-27   1
gi|2982333|gb|AAC32151.1|(AF051252) probable 60S ribo... +1   316  2.4e-27   1
gi|4104078|gb|AAD01931.1|(AF031466) ribosomal protein... +1   277  3.3e-23   1
gi|2996179|gb|AAC32179.1|(AF051765) putative 60S ribo... +1   259  2.7e-21   1
gi|2996177|gb|AAC32178.1|(AF051764) putative 60S ribo... +1   244  1.0e-19   1
gi|8698743|gb|AAF78501.1|AC012187_21(AC012187) Contai... +1   136  5.9e-19   2
gi|11436069ref|XP_006092.1| ribosomal protein L27a [H... +1   232  1.9e-18   1
gi|3914721|sp|Q29333|RL2A_PIG60S RIBOSOMAL PROTEIN L27A  +1   229  4.1e-18   1
gi|3122688|sp|O26133|RL15_METTH50S RIBOSOMAL PROTEIN ... +1   187  1.1e-13   1
gi|1710492|sp|P54047|RL15_METJA50S RIBOSOMAL PROTEIN ... +1   183  3.0e-13   1
gi|132684|sp|P14032|RL15_METVA50S RIBOSOMAL PROTEIN L... +1   180  6.3e-13   1
gi|7021396|gb|AAF35324.1|(AF222926) ribosomal protein... +1   172  4.4e-12   1
gi|1881382|dbj|BAA19416.1|(AB001584) ribosomal protei... +1   165  2.5e-11   1
gi|6685880|sp|Q9YF98|RL15_AERPE50S RIBOSOMAL PROTEIN ... +1   162  5.1e-11   1
gi|3914680|sp|O05643|RL15_SULAC50S RIBOSOMAL PROTEIN ... +1   157  1.7e-10   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 98 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|3608481|gb|AAD13388.1|  (AF088913) ribosomal protein L27a [Petunia x
            hybrida]
            Length = 150

Frame  1 hits (HSPs):     _______________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100

  Plus Strand HSPs:

 Score = 633 (222.8 bits), Expect = 6.3e-61, P = 6.3e-61
 Identities = 118/138 (85%), Positives = 126/138 (91%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKY PG+FGKVGMRYFHKLRNK
Sbjct:     8 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNK 67

Query:   181 FYSPILNIDKLWSLVPQEVKDKASK---ENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVK 351
             FY P +NIDKLWSLVPQ+VKDK +    +  APLIDVTQ+GYFKVLGKGVLP+NQ VVVK
Sbjct:    68 FYCPTVNIDKLWSLVPQDVKDKVAAGGAKGTAPLIDVTQYGYFKVLGKGVLPENQAVVVK 127

Query:   352 AKLISKIAEKKIKEAGGA 405
             AKL+SK AEKKIKEAGGA
Sbjct:   128 AKLVSKNAEKKIKEAGGA 145


 >gi|9295692|gb|AAF86998.1|AC005292_7  (AC005292) F26F24.13 [Arabidopsis
            thaliana] >gi|11692928|gb|AAG40067.1|AF324716_1 (AF324716)
            F26F24.13 [Arabidopsis thaliana]
            Length = 146

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 626 (220.4 bits), Expect = 3.5e-60, P = 3.5e-60
 Identities = 115/135 (85%), Positives = 126/135 (93%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKY PG+FGKVGMRYFHKLRNK
Sbjct:     8 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNK 67

Query:   181 FYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
             F+ PI+N+DKLWSLVP++VK K+SK+N  PLIDVTQ G+FKVLGKG LP+N+P VVKAKL
Sbjct:    68 FFCPIVNLDKLWSLVPEDVKAKSSKDN-VPLIDVTQHGFFKVLGKGHLPENKPFVVKAKL 126

Query:   361 ISKIAEKKIKEAGGA 405
             ISK AEKKIKEAGGA
Sbjct:   127 ISKTAEKKIKEAGGA 141


 >gi|1710530|sp|P49637|RL2A_ARATH  60S RIBOSOMAL PROTEIN L27A
            >gi|2129719|pir||S71256 ribosomal protein L27a, cytosolic -
            Arabidopsis thaliana >gi|1107487|emb|CAA63025.1| (X91959) 60S
            ribosomal protein L27a [Arabidopsis thaliana]
            >gi|12324756|gb|AAG52338.1|AC011663_17 (AC011663) 60S ribosomal
            protein L27A; 82981-83421 [Arabidopsis thaliana]
            >gi|12325037|gb|AAG52464.1|AC010796_3 (AC010796) 60S ribosomal
            protein L27A; 71521-71081 [Arabidopsis thaliana]
            Length = 146

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 119..140
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..143
   PFAM                 L15: Ribosomal protein L15               107..140
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..105
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..139
__________________


  Plus Strand HSPs:

 Score = 623 (219.3 bits), Expect = 7.2e-60, P = 7.2e-60
 Identities = 114/135 (84%), Positives = 126/135 (93%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKY PG+FGKVGMRYFHKLRNK
Sbjct:     8 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNK 67

Query:   181 FYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
             F+ PI+N+DKLWSLVP++VK K++K+N  PLIDVTQ G+FKVLGKG LP+N+P VVKAKL
Sbjct:    68 FFCPIVNLDKLWSLVPEDVKAKSTKDN-VPLIDVTQHGFFKVLGKGHLPENKPFVVKAKL 126

Query:   361 ISKIAEKKIKEAGGA 405
             ISK AEKKIKEAGGA
Sbjct:   127 ISKTAEKKIKEAGGA 141


 >gi|7959355|dbj|BAA96068.1|  (AB042856) 60S ribosomal protein L27a [Panax
            ginseng]
            Length = 146

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 620 (218.3 bits), Expect = 1.5e-59, P = 1.5e-59
 Identities = 112/135 (82%), Positives = 123/135 (91%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             N KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKY PG+FGKVGMRYFH+LRNK
Sbjct:     8 NXKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNK 67

Query:   181 FYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
             FY P++NIDKLWSL+PQE K+KA  +N AP+IDVTQ GYFKVLGKG LP + P+VVKAKL
Sbjct:    68 FYCPVVNIDKLWSLLPQEAKEKADAQN-APVIDVTQHGYFKVLGKGFLPSSHPIVVKAKL 126

Query:   361 ISKIAEKKIKEAGGA 405
             +SK AEKKIKEAGGA
Sbjct:   127 VSKTAEKKIKEAGGA 141


 >gi|11546004|gb|AAG37952.1|  (AC087079) Hypothetical protein Y37E3.h
            [Caenorhabditis elegans]
            Length = 202

Frame  1 hits (HSPs):    _______________           ______________________ 
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 271 (95.4 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
 Identities = 52/87 (59%), Positives = 70/87 (80%), Frame = +1

Query:   145 VGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVL 324
             VGMR FH  +N+ Y P +N+++LWSLVPQEV+DKA+   K+P+ID T+ GYFKVLGKG+L
Sbjct:   113 VGMRVFHLNKNQHYCPTVNVERLWSLVPQEVRDKATG-GKSPVIDCTKLGYFKVLGKGLL 171

Query:   325 PQNQPVVVKAKLISKIAEKKIKEAGGA 405
             P+  P++VKA+  S  AE+KIK+AGGA
Sbjct:   172 PET-PLIVKARFFSHEAEQKIKKAGGA 197

 Score = 245 (86.2 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
 Identities = 45/56 (80%), Positives = 47/56 (83%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKV-GMRYFHK 168
             RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKY PG+FGKV  +RYF K
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVLFLRYFFK 64


 >gi|3122699|sp|O01358|RL2A_OSCBR  60S RIBOSOMAL PROTEIN L27A (RIBOSOMAL PROTEIN
            RPL-27) >gi|7440776|pir||T10266 ribosomal protein L27 - Oscheius
            brevesophaga >gi|1906642|gb|AAB71725.1| (U90830) ribosomal protein
            rpl-27 [Oscheius brevesophaga]
            Length = 145

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 118..139
   PFAM                 L15: Ribosomal protein L15               107..139
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..105
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..138
__________________


  Plus Strand HSPs:

 Score = 491 (172.8 bits), Expect = 7.0e-46, P = 7.0e-46
 Identities = 93/134 (69%), Positives = 106/134 (79%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKY PG+FGKVGMR FH  +N  
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNHH 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLI 363
             Y P +N+D+LW+LVP+E K K S E KAP+ID  + GYFKVLGKG+LP+ QP++VKAK  
Sbjct:    69 YCPTVNVDRLWALVPEEQKTKVSAE-KAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFF 126

Query:   364 SKIAEKKIKEAGGA 405
             S  AE KIK AGGA
Sbjct:   127 SHEAENKIKAAGGA 140


 >gi|132846|sp|P18445|RL2A_RAT  60S RIBOSOMAL PROTEIN L27A >gi|71190|pir||R5RTLA
            ribosomal protein L27a, cytosolic [validated] - rat
            >gi|57696|emb|CAA36947.1| (X52733) ribosomal protein L27a (AA 1 -
            148) [Rattus rattus] >gi|227227|prf||1617101A ribosomal protein
            L27a [Rattus norvegicus]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 486 (171.1 bits), Expect = 2.4e-45, P = 2.4e-45
 Identities = 90/135 (66%), Positives = 109/135 (80%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY PG+FGKVGMR++H  RN+ 
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQS 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+DKLW+LV ++ +  A+K     AP+IDV + GY+KVLGKG LP+ QPV+VKAK
Sbjct:    69 FCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAK 127

Query:   358 LISKIAEKKIKEAGGA 405
               S+ AE+KIK  GGA
Sbjct:   128 FFSRRAEEKIKGVGGA 143


 >gi|4506625  ref|NP_000981.1| ribosomal protein L27a [Homo sapiens]
            >gi|1173017|sp|P46776|RL2A_HUMAN 60S RIBOSOMAL PROTEIN L27A
            >gi|1362930|pir||S55914 ribosomal protein L27a - human
            >gi|550017|gb|AAA85656.1| (U14968) ribosomal protein L27a [Homo
            sapiens] >gi|4760602|dbj|BAA77361.1| (AB020236) ribosomal protein
            L27A [Homo sapiens] >gi|1096940|prf||2113200C ribosomal protein
            L27a [Homo sapiens]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 482 (169.7 bits), Expect = 6.3e-45, P = 6.3e-45
 Identities = 90/135 (66%), Positives = 111/135 (82%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKY PG+FGKVGM+++H  RN+ 
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQS 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
             + P +N+DKLW+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+ QPV+VKA
Sbjct:    69 FCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKA 126

Query:   355 KLISKIAEKKIKEAGGA 405
             K  S+ AE+KIK  GGA
Sbjct:   127 KFFSRRAEEKIKSVGGA 143


 >gi|1350711|sp|P48160|RL2A_DICDI  60S RIBOSOMAL PROTEIN L27A
            >gi|7440771|pir||JE0320 ribosomal protein Ddl27a - slime mold
            (Dictyostelium discoideum) >gi|790954|dbj|BAA08873.1| (D50338)
            ribosomal protein [Dictyostelium discoideum]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 101..117
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 121..142
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..145
   PFAM                 L15: Ribosomal protein L15               110..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      110..141
__________________


  Plus Strand HSPs:

 Score = 480 (169.0 bits), Expect = 1.0e-44, P = 1.0e-44
 Identities = 86/136 (63%), Positives = 113/136 (83%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             +RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKY PG+FGK+GMR+FH LRN+
Sbjct:     8 HRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQ 67

Query:   181 FYSPILNIDKLWSLVPQEV-KDKASK-ENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
             ++ P ++++K+W+LVP+ V K  A+K +  AP++DVTQ G+FKVLG G+LP  QP++VKA
Sbjct:    68 YHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKA 126

Query:   355 KLISKIAEKKIKEAGGA 405
             +  SK+AEKKIK  GGA
Sbjct:   127 RYFSKVAEKKIKAVGGA 143


 >gi|4760604|dbj|BAA77362.1|  (AB020237) ribosomal protein L27A [Mus musculus]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 479 (168.6 bits), Expect = 1.3e-44, P = 1.3e-44
 Identities = 91/135 (67%), Positives = 110/135 (81%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY PG+FGKVGMR++H  RN+ 
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQS 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
             + P +N+DK W+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+ QPV+VKA
Sbjct:    69 FCPTVNLDKPWTLVSEQTRVNAAK-NKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKA 126

Query:   355 KLISKIAEKKIKEAGGA 405
             K  S+ AE+KIK  GGA
Sbjct:   127 KFFSRRAEEKIKGVGGA 143


 >gi|1350712|sp|P47830|RL2A_XENLA  60S RIBOSOMAL PROTEIN L27A (L22)
            >gi|530785|emb|CAA45531.1| (X64207) ribosomal protein L22 [Xenopus
            laevis] >gi|1095557|prf||2109274A ribosomal protein L22 [Xenopus
            laevis]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 6..20
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 26..35
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 100..116
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 120..141
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 478 (168.3 bits), Expect = 1.7e-44, P = 1.7e-44
 Identities = 88/135 (65%), Positives = 107/135 (79%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY PG+FGKVGMR++H  +N+ 
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQS 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASK--ENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+DKLW+LV ++ +   +K  E  AP+ID    GY+KVLGKG LP+ QPV+VKAK
Sbjct:    69 FCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAK 127

Query:   358 LISKIAEKKIKEAGGA 405
               S+ AE+KIK  GGA
Sbjct:   128 FFSRKAEEKIKSVGGA 143


 >gi|6321335  ref|NP_011412.1| Ribosomal protein L28 (L29) (rp44) (YL24); Rpl28p
            [Saccharomyces cerevisiae] >gi|71192|pir||R6BY29 ribosomal protein
            L27a.e, cytosolic - yeast (Saccharomyces cerevisiae)
            >gi|3620|emb|CAA25729.1| (X01573) ribosomal protein L29
            [Saccharomyces cerevisiae] >gi|172484|gb|AAA35003.1| (K01162)
            ribosomal protein L29 [Saccharomyces cerevisiae]
            >gi|1256572|gb|AAA96382.1| (U30497) CYH2 gene product [Cloning
            vector pAS2-1] >gi|1322643|emb|CAA96808.1| (Z72625) ORF YGL103w
            [Saccharomyces cerevisiae]
            Length = 149

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100

  Plus Strand HSPs:

 Score = 477 (167.9 bits), Expect = 2.1e-44, P = 2.1e-44
 Identities = 89/135 (65%), Positives = 109/135 (80%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKY PG+FGKVGMRYFHK +  F
Sbjct:     9 RKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHF 68

Query:   184 YSPILNIDKLWSLVPQEVKDK----ASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVK 351
             + P+LN+DKLW+L+P++ +D+    ASKE  AP+ID    GY K+LGKG +P N PV+VK
Sbjct:    69 WKPVLNLDKLWTLIPEDKRDQYLKSASKET-APVIDTLAAGYGKILGKGRIP-NVPVIVK 126

Query:   352 AKLISKIAEKKIKEAGG 402
             A+ +SK+AE+KI+ AGG
Sbjct:   127 ARFVSKLAEEKIRAAGG 143


 >gi|132847|sp|P02406|RL28_YEAST  60S RIBOSOMAL PROTEIN L28 (L27A) (L29) (YL24)
            (RP62)
            Length = 149

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM00524: RIBOSOMALPROTEINL15             2..145
   Entrez               Domain: NUCLEAR LOCALIZATION SIGNAL.     7..13
   Entrez               Domain: NUCLEAR LOCALIZATION SIGNAL.     24..30
   PFAM                 L15: Ribosomal protein L15               110..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      110..141
__________________


  Plus Strand HSPs:

 Score = 475 (167.2 bits), Expect = 3.5e-44, P = 3.5e-44
 Identities = 89/135 (65%), Positives = 109/135 (80%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKY PG+FGKVGMRYFHK +  F
Sbjct:     9 RKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHF 68

Query:   184 YSPILNIDKLWSLVPQEVKDK----ASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVK 351
             + P+LN+DKLW+L+P++ +D+    ASKE  AP+ID    GY K+LGKG +P N PV+VK
Sbjct:    69 WKPVLNLDKLWTLIPEDKRDQYLKSASKET-APVIDTLAAGYGKILGKGRIP-NVPVIVK 126

Query:   352 AKLISKIAEKKIKEAGG 402
             A+ +SK+AE+KI+ AGG
Sbjct:   127 ARFVSKLAEEKIRAAGG 143


 >gi|132844|sp|P14115|RL2A_MOUSE  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|71191|pir||R5MS27 ribosomal protein L27a - mouse
            >gi|50321|emb|CAA28678.1| (X05021) URF (homologous to yeast L29
            ribosomal protein) [Mus musculus]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 6..20
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 26..35
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 100..116
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 120..141
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 473 (166.5 bits), Expect = 5.6e-44, P = 5.6e-44
 Identities = 90/135 (66%), Positives = 109/135 (80%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHP GRGNAGGMHHHRI FDKY PG+FGKVGMR++H  RN+ 
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPSGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQS 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
             + P +N+DK W+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+ QPV+VKA
Sbjct:    69 FCPTVNLDKPWTLVSEQTRVNAAK-NKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKA 126

Query:   355 KLISKIAEKKIKEAGGA 405
             K  S+ AE+KIK  GGA
Sbjct:   127 KFFSRRAEEKIKGVGGA 143


 >gi|2500272|sp|Q94530|RL2B_DROME  60S RIBOSOMAL PROTEIN L27A 2
            >gi|7440770|pir||JC6202 ribosomal protein L27a - fruit fly
            (Drosophila melanogaster) >gi|1575561|gb|AAC47472.1| (U66358)
            RpL27a [Drosophila melanogaster] >gi|1881581|gb|AAC47475.1|
            (U66357) ribosomal protein RpL27a [Drosophila melanogaster]
            Length = 149

Frame  1 hits (HSPs):      _____________________________________________  
Annotated Domains:        ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 8..22
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 28..37
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     7..109
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 470 (165.4 bits), Expect = 1.2e-43, P = 1.2e-43
 Identities = 91/134 (67%), Positives = 105/134 (78%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY PG+FGKVGMR FH  R   
Sbjct:    10 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHK 69

Query:   184 YSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+DKLWSLV  E   +  KE   KAP+ID+ +FGY+K+LG+G LP  +PV+VKAK
Sbjct:    70 FRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAK 128

Query:   358 LISKIAEKKIKEAGG 402
               SK AE KIK+AGG
Sbjct:   129 YFSKKAEDKIKKAGG 143


 >gi|10727335|gb|AAF51006.2|  (AE003576) RpL27A gene product [Drosophila
            melanogaster]
            Length = 282

Frame  1 hits (HSPs):                            ________________________ 
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 282
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 470 (165.4 bits), Expect = 1.2e-43, P = 1.2e-43
 Identities = 91/134 (67%), Positives = 105/134 (78%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY PG+FGKVGMR FH  R   
Sbjct:   143 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHK 202

Query:   184 YSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+DKLWSLV  E   +  KE   KAP+ID+ +FGY+K+LG+G LP  +PV+VKAK
Sbjct:   203 FRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAK 261

Query:   358 LISKIAEKKIKEAGG 402
               SK AE KIK+AGG
Sbjct:   262 YFSKKAEDKIKKAGG 276


 >gi|730551|sp|P41092|RL2A_DROME  60S RIBOSOMAL PROTEIN L27A 1
            >gi|1071986|pir||JC2392 ribosomal protein L27a - fruit fly
            (Drosophila melanogaster) >gi|397852|emb|CAA52601.1| (X74484)
            ribosomal protein L27a [Drosophila melanogaster]
            Length = 149

Frame  1 hits (HSPs):      _____________________________________________  
Annotated Domains:       ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 8..22
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 28..37
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   DOMO                 DM00524: RIBOSOMALPROTEINL15             4..146
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     7..109
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
 Identities = 91/134 (67%), Positives = 104/134 (77%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGN GGMHHHRI FDKY PG+FGKVGMR FH  R   
Sbjct:    10 RKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHK 69

Query:   184 YSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+DKLWSLV  E   +  KE   KAP+ID+ +FGY+K+LG+G LP  +PV+VKAK
Sbjct:    70 FRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAK 128

Query:   358 LISKIAEKKIKEAGG 402
               SK AE KIKEAGG
Sbjct:   129 YFSKKAEDKIKEAGG 143


 >gi|5921511|emb|CAB56512.1|  (AJ249749) putative 60S ribosomal protein L27A
            [Mortierella alpina]
            Length = 147

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 466 (164.0 bits), Expect = 3.1e-43, P = 3.1e-43
 Identities = 87/135 (64%), Positives = 105/135 (77%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             NRKKRGHVSAGHGR+GKHRKHPGGRG AGG HHHRI  DKY PG+FGKVGMR FH  RN 
Sbjct:     8 NRKKRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRINMDKYHPGYFGKVGMRRFHLTRNG 67

Query:   181 FYSPILNIDKLWSLVPQEVKDKASKENKA-PLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
              + PI+N+D LWSLV ++ +  A+K  +  P+ID  + GY KVL KG LP+ QPV+VKA+
Sbjct:    68 QHCPIVNLDTLWSLVSEQTRKNAAKNTEVVPVIDTLRAGYGKVLAKGRLPE-QPVIVKAR 126

Query:   358 LISKIAEKKIKEAGGA 405
              +S+ AE+KIK  GGA
Sbjct:   127 YVSRAAEQKIKAVGGA 142


 >gi|132845|sp|P08978|RL28_NEUCR  60S RIBOSOMAL PROTEIN L28 (L27A) (L29) (CRP1)
            >gi|71193|pir||R6NC7A ribosomal protein L27a.e - Neurospora crassa
            >gi|2991|emb|CAA29635.1| (X06320) put. ribosomal protein
            [Neurospora crassa] >gi|2993|emb|CAA31630.1| (X13254) put.
            ribosomal protein (AA 1-149) [Neurospora crassa]
            >gi|11595625|emb|CAC18245.1| (AL451018) ribosomal protein L27a.e
            [Neurospora crassa]
            Length = 149

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..146
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 460 (161.9 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 87/135 (64%), Positives = 105/135 (77%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVSAG GR+GKHRKHPGGRG AGG HHHR   DKY PG+FGKVGMR+FH LRN  
Sbjct:     9 RKHRGHVSAGKGRVGKHRKHPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRHFHLLRNHQ 68

Query:   184 YSPILNIDKLWSLVPQEVKDK---ASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
             ++PILNI+KLW+LVP E ++K    +    AP+ID+   GY K+LGKG LPQ  P+VV+A
Sbjct:    69 WAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRA 127

Query:   355 KLISKIAEKKIKEAGG 402
             + +S  AE+KIKEAGG
Sbjct:   128 RYVSAEAERKIKEAGG 143


 >gi|2500274|sp|P78987|RL2A_ERYGR  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|1865792|emb|CAA72204.1| (Y11394) 60S ribosomal protein L29
            (L27A) [Blumeria graminis f. sp. hordei]
            Length = 149

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 455 (160.2 bits), Expect = 4.6e-42, P = 4.6e-42
 Identities = 84/135 (62%), Positives = 104/135 (77%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVSAGHGR+GKHRKHPGGRG AGG HHHR   DKY PG+FGKVGMRYFHK  N F
Sbjct:     9 RKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRYFHKQGNHF 68

Query:   184 YSPILNIDKLWSLVPQEVKD---KASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
             + P+LN++KLWSL+P E ++    ++  +  P+ID+   GY KVLGKG +P+  P+VV+A
Sbjct:    69 WKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRA 127

Query:   355 KLISKIAEKKIKEAGG 402
             +  SK AE+KI EAGG
Sbjct:   128 RWFSKEAERKITEAGG 143


 >gi|1710529|sp|P36585|R28A_SCHPO  60S RIBOSOMAL PROTEIN L28-A (L27A) (L29)
            >gi|101072|pir||S25593 60s ribosomal protein l27a - fission yeast
            (Schizosaccharomyces pombe) >gi|2119130|pir||S60002 ribosomal
            protein L27a.e.2 - fission yeast (Schizosaccharomyces pombe)
            >gi|5057|emb|CAA40492.1| (X57207) ribosomal protein L29
            [Schizosaccharomyces pombe] >gi|1150623|emb|CAA56901.1| (X80929)
            rpgL29 [Schizosaccharomyces pombe] >gi|3859085|emb|CAA21962.1|
            (AL033406) 60s ribosomal protein L27a.2/L28A [Schizosaccharomyces
            pombe]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               110..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      110..141
__________________


  Plus Strand HSPs:

 Score = 445 (156.6 bits), Expect = 5.2e-41, P = 5.2e-41
 Identities = 83/134 (61%), Positives = 105/134 (78%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVSAGHGRIGKHRKHPGGRG AGG+ H R  FDKY PG+FGKVGMR FH ++N  
Sbjct:     9 RKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPL 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+D+LW+L+P E +DK   +N   AP+I+V Q GY KVLGKG LP+  PV+V+ +
Sbjct:    69 WRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTR 127

Query:   358 LISKIAEKKIKEAGG 402
              +S+ AE+KIK+AGG
Sbjct:   128 YVSRRAEEKIKQAGG 142


 >gi|400993|sp|Q00454|RL2A_TETTH  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|1078807|pir||A56403 ribosomal protein L27a.e - Tetrahymena
            thermophila >gi|161842|gb|AAA30124.1| (M76718) rpL29 [Tetrahymena
            thermophila]
            Length = 149

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 29..38
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 102..118
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 122..143
   Entrez               mutagenized site: M->K,E: CONFERS CYLOHE 40
   PFAM                 L15: Ribosomal protein L15               111..143
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     2..109
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      111..142
__________________


  Plus Strand HSPs:

 Score = 443 (155.9 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 86/136 (63%), Positives = 103/136 (75%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRN 177
             RK RGHVS GHGR+GKHRK    GGRG AGGMHHHRIL +K+ PG++GK+GMR FH  +N
Sbjct:     9 RKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKKN 68

Query:   178 KFYSPILNIDKLWSLVPQEVKDK-ASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
               + P++NIDKLWSLV    + K A  + K P+IDVT+ G+FKVLGKG LP NQPVVVKA
Sbjct:    69 PLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKA 127

Query:   355 KLISKIAEKKIKEAGGA 405
             K  SK AE++I   GGA
Sbjct:   128 KYFSKTAERRIVAVGGA 144


 >gi|540075|gb|AAA73459.1|  (U13207) large subunit ribosomal protein 29 [Euplotes
            crassus] >gi|1093613|prf||2104279A ribosomal protein L29 [Euplotes
            crassus]
            Length = 147

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 443 (155.9 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 84/134 (62%), Positives = 103/134 (76%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGR+GKHRKHPGGRG AG  HHHRI   KY PG  GK GMR+FH +RN++
Sbjct:     9 RKLRGHVSHGHGRVGKHRKHPGGRGMAGPEHHHRINVFKYHPGHIGKHGMRHFHLMRNQY 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
             Y P +N+ KLWSLV +E + KA  + +K  LIDV + GY+KVLGKG+LP+  P+VVKAKL
Sbjct:    69 YCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKL 127

Query:   361 ISKIAEKKIKEAGGA 405
              +  AEK+IK+ GGA
Sbjct:   128 FTPTAEKRIKQVGGA 142


 >gi|1350705|sp|P48161|RL2A_EUPCR  60S RIBOSOMAL PROTEIN L27A (L29)
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 100..116
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 120..141
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..144
   PFAM                 L15: Ribosomal protein L15               109..141
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..107
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..140
__________________


  Plus Strand HSPs:

 Score = 443 (155.9 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 84/134 (62%), Positives = 103/134 (76%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGR+GKHRKHPGGRG AG  HHHRI   KY PG  GK GMR+FH +RN++
Sbjct:     9 RKLRGHVSHGHGRVGKHRKHPGGRGMAGPEHHHRINVFKYHPGHIGKHGMRHFHLMRNQY 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
             Y P +N+ KLWSLV +E + KA  + +K  LIDV + GY+KVLGKG+LP+  P+VVKAKL
Sbjct:    69 YCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKL 127

Query:   361 ISKIAEKKIKEAGGA 405
              +  AEK+IK+ GGA
Sbjct:   128 FTPTAEKRIKQVGGA 142


 >gi|12230515|sp|P57728|R28B_SCHPO  60S RIBOSOMAL PROTEIN L28-B
            >gi|2119131|pir||S60001 60s ribosomal protein ll28B 27a - fission
            yeast  (Schizosaccharomyces pombe) >gi|547474|emb|CAA85731.1|
            (Z37501) Rpl29p [Schizosaccharomyces pombe]
            >gi|4176528|emb|CAA22884.1| (AL035263) 60s ribosomal protein ll28B
            27a [Schizosaccharomyces pombe]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 82/134 (61%), Positives = 104/134 (77%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVSAGHGRIGKHRKHPGGRG AGG+ H R  FDKY PG+FGKVGMR FH ++N  
Sbjct:     9 RKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPL 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             + P +N+D+LW+LVP E ++K   +N   AP+I+V Q GY KVLGKG LP   PV+++ +
Sbjct:    69 WRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTR 127

Query:   358 LISKIAEKKIKEAGG 402
              +S+ AE+KIK+AGG
Sbjct:   128 YVSRRAEEKIKQAGG 142


 >gi|161844|gb|AAA30125.1|  (M76719) rpL29 [Tetrahymena thermophila]
            Length = 149

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100

  Plus Strand HSPs:

 Score = 426 (150.0 bits), Expect = 5.4e-39, P = 5.4e-39
 Identities = 83/136 (61%), Positives = 100/136 (73%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRN 177
             RK RGHVS GHGR+GKHRK    GGRG AGGMHHHRIL +K+ PG++GK+GMR FH  +N
Sbjct:     9 RKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKKN 68

Query:   178 KFYSPILNIDKLWSLVPQEVKDK-ASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
               + P++NIDKLW       + K A  + K P+IDVT+ G+FKVLGKG LP NQPVVVKA
Sbjct:    69 PLHCPVVNIDKLWRKETDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKA 127

Query:   355 KLISKIAEKKIKEAGGA 405
             K  SK AE++I   GGA
Sbjct:   128 KYFSKTAERRIVAVGGA 144


 >gi|2500273|sp|Q27021|RL2A_TENMO  60S RIBOSOMAL PROTEIN L27A
            >gi|1431618|emb|CAA67590.1| (X99204) ribosomal protein L27a
            [Tenebrio molitor]
            Length = 148

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 27..36
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 101..117
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 121..142
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..108
   PRODOM               PD064595: RL2A_TENMO                     110..147
__________________


  Plus Strand HSPs:

 Score = 425 (149.6 bits), Expect = 6.9e-39, P = 6.9e-39
 Identities = 78/135 (57%), Positives = 101/135 (74%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY PG+FGK+GMR +H  RN  
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRNSK 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASK--ENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             ++P +N+DKLW+LV ++ + K     E KAP+ID+ + GY+K+LGKG    N  ++  + 
Sbjct:    69 WAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLSLLKPSF 128

Query:   358 LISKIAEKKIKEAGGA 405
              ++++ E KIK  GGA
Sbjct:   129 SLNRL-EDKIKAVGGA 143


 >gi|1263104|emb|CAA65760.1|  (X97045) ORF [Bos taurus]
            Length = 165

Frame  1 hits (HSPs):      ___________________________________________    
                        __________________________________________________
Database sequence:     |              |               |              |    | 165
                       0             50             100            150

  Plus Strand HSPs:

 Score = 414 (145.7 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 84/140 (60%), Positives = 105/140 (75%), Frame = +1

Query:     4 RKKRGHVSAGHGRI-----GKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHK 168
             RK RGHVS GHG I      +  + PG RGNAGGMHHHRI FDKY PG+FGKVGMR++H 
Sbjct:    11 RKLRGHVSHGHGAIVMCSCRQTPETPGSRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 70

Query:   169 LRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQNQP 339
              RN+ + P +N+DKLW+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG LP+ QP
Sbjct:    71 KRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGKGKLPK-QP 128

Query:   340 VVVKAKLISKIAEKKIKEAGGA 405
             V+VKAK  S+ AE+KIK  GGA
Sbjct:   129 VIVKAKFFSRRAEEKIKGVGGA 150


 >gi|12584634|emb|CAC27402.1|  (AJ305223) 60S ribosomal protein L27A or L22
            [Platichthys flesus]
            Length = 125

Frame  1 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |                   |                   |          | 125
                       0                  50                 100

  Plus Strand HSPs:

 Score = 411 (144.7 bits), Expect = 2.1e-37, P = 2.1e-37
 Identities = 75/120 (62%), Positives = 95/120 (79%), Frame = +1

Query:    49 KHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVP 228
             KHRKHPGGRGNAGGMHHHRI FDKY PG+FGKVGMR++H  RN  + P +N+DKLW+LV 
Sbjct:     1 KHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNTTHCPTINLDKLWTLVS 60

Query:   229 QEVKDKASKENK--APLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGG 402
             ++ +    KE++  AP+ID  + GY+K+LGKG LP+ QPV+VKAK  S+ AE+KIK  GG
Sbjct:    61 EQTRLNYGKESEGPAPIIDAVRAGYYKILGKGKLPK-QPVIVKAKFFSRRAEEKIKAVGG 119

Query:   403 A 405
             A
Sbjct:   120 A 120


 >gi|10178306|emb|CAC08391.1|  (AL121886) dJ1028D15.2 (similar to RPL27A
            (ribosomal protein L27a)) [Homo sapiens]
            Length = 142

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                 |                |               | 142
                       0                50              100

  Plus Strand HSPs:

 Score = 383 (134.8 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 84/133 (63%), Positives = 100/133 (75%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             +K RGHVS GHGRIGK +KHP G  NAGGMHHHRI F+KY PG+FGKVGMRY+ K RN+ 
Sbjct:     9 QKLRGHVSHGHGRIGKLQKHPRGHSNAGGMHHHRINFNKYYPGYFGKVGMRYYLK-RNQT 67

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGVLPQNQPVVVKA 354
              S    +DKLW+LV ++ +  A+K NK   APLIDV Q GY+KVLGK  LP+ QPV+VKA
Sbjct:    68 VS----LDKLWTLVSEQTQVNAAK-NKPGAAPLIDVVQSGYYKVLGKEKLPK-QPVIVKA 121

Query:   355 KLISKIAEKKIKEAGG 402
             K  S+ AEK IK   G
Sbjct:   122 KFFSRRAEK-IKGVKG 136


 >gi|10305197|gb|AAG16278.1|AC016024_1  (AC016024) Ribosomal protein L27a copy 1
            [Leishmania major]
            Length = 219

Frame  1 hits (HSPs):                     _______________________________ 
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 68/134 (50%), Positives = 95/134 (70%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             R +RG    G+GR+GKHRKH  GRGNAGGMHHHRI FDKY PG+FGK+GM ++H+ +N  
Sbjct:    83 RHQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFDKYHPGYFGKLGMDHYHRKKNPM 142

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLI 363
             + P +N++ L  L+  E   KA+K    P++D+   GY K+LG G +    P +VKA+ +
Sbjct:   143 WKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSSGYAKLLGNGHI--QVPCIVKARYV 200

Query:   364 SKIAEKKIKEAGGA 405
             SK+A+KKI++AGGA
Sbjct:   201 SKLADKKIRKAGGA 214


 >gi|10305199|gb|AAG16280.1|AC016024_3  (AC016024) ribosomal protein L27a copy 2
            [Leishmania major]
            Length = 145

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 68/134 (50%), Positives = 95/134 (70%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             R +RG    G+GR+GKHRKH  GRGNAGGMHHHRI FDKY PG+FGK+GM ++H+ +N  
Sbjct:     9 RHQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFDKYHPGYFGKLGMDHYHRKKNPM 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLI 363
             + P +N++ L  L+  E   KA+K    P++D+   GY K+LG G +    P +VKA+ +
Sbjct:    69 WKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSSGYAKLLGNGHI--QVPCIVKARYV 126

Query:   364 SKIAEKKIKEAGGA 405
             SK+A+KKI++AGGA
Sbjct:   127 SKLADKKIRKAGGA 140


 >gi|11136707|gb|AAG31288.1|AC009805_1  (AC009805) Ribosomal protein L27a copy 1
            [Leishmania major]
            Length = 159

Frame  1 hits (HSPs):         ___________________________________________ 
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 68/134 (50%), Positives = 95/134 (70%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             R +RG    G+GR+GKHRKH  GRGNAGGMHHHRI FDKY PG+FGK+GM ++H+ +N  
Sbjct:    23 RHQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFDKYHPGYFGKLGMDHYHRKKNPM 82

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLI 363
             + P +N++ L  L+  E   KA+K    P++D+   GY K+LG G +    P +VKA+ +
Sbjct:    83 WKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSSGYAKLLGNGHI--QVPCIVKARYV 140

Query:   364 SKIAEKKIKEAGGA 405
             SK+A+KKI++AGGA
Sbjct:   141 SKLADKKIRKAGGA 154


 >gi|6094046|sp|O15883|RL2A_TRYBB  60S RIBOSOMAL PROTEIN L27A (L29)
            >gi|2232029|gb|AAB62182.1| (U96757) ribosomal protein L27a
            [Trypanosoma brucei brucei]
            Length = 145

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               108..139
   PRODOM               PD002840: RL2A(13) RL28(3) O62581(1)     1..105
   PRODOM               PD172443: RL2A_TRYBB                     107..144
__________________


  Plus Strand HSPs:

 Score = 377 (132.7 bits), Expect = 8.4e-34, P = 8.4e-34
 Identities = 70/134 (52%), Positives = 93/134 (69%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             R +RG    G+GR+GKHRKHP GRGNAGG HHHRI F KY PG+FGK GM ++HK +N  
Sbjct:     9 RHQRGSTFCGYGRVGKHRKHPSGRGNAGGEHHHRINFRKYHPGYFGKCGMNHYHKKKNTT 68

Query:   184 YSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLI 363
             + P +N+D L  L+ ++   KA K    P+ID+   GY K+LG G L    P +VKA+ +
Sbjct:    69 WKPTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAPCIVKARWV 126

Query:   364 SKIAEKKIKEAGGA 405
             SK+A+KKI++AGGA
Sbjct:   127 SKLADKKIRKAGGA 140


 >gi|12580751|emb|CAC27069.1|  (AJ010592) 60S ribosomal protein L27A [Guillardia
            theta]
            Length = 144

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 365 (128.5 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 68/134 (50%), Positives = 94/134 (70%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             +RKKRGHVS+GHGR+GKHRKHPGGRGN+GG HHH+I F+KY    FGK GMRY+ KL+  
Sbjct:     8 SRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRYYRKLKQN 67

Query:   181 FYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
              ++  +N+DK+   + + +      +N +   D++  G  KVLG+G + Q +P V+KA  
Sbjct:    68 NFNKSINLDKISDKLVKNMH--LHTKNSSDSFDLSLIGMSKVLGRGRMVQ-KPFVIKANS 124

Query:   361 ISKIAEKKIKEAGG 402
              SK+A KKIK+AGG
Sbjct:   125 FSKVAVKKIKKAGG 138


 >gi|7674267|sp|O62581|RL2A_ENCCU  60S RIBOSOMAL PROTEIN L27A
            >gi|3025760|gb|AAC68578.1| (AF054829) ribosomal protein L27a
            [Encephalitozoon cuniculi]
            Length = 147

Frame  1 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 318 (111.9 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 60/133 (45%), Positives = 87/133 (65%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             RK RGHVS G+GR+GKHRKH GGRG AGG  H +  F ++ P + GK GMR +H+  N  
Sbjct:     9 RKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRVYHRKENSD 68

Query:   184 YSPILNIDKLWSLVPQEVK-DKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
             Y+  ++  +LW ++P+E + D      K P+IDV +FGY  V+G G L   +P+VVKA+ 
Sbjct:    69 YARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVG-GKLSLERPIVVKARY 127

Query:   361 ISKIAEKKIKEAGG 402
              +  A+++I + GG
Sbjct:   128 FTPSAKEEITKVGG 141


 >gi|2982333|gb|AAC32151.1|  (AF051252) probable 60S ribosomal protein L27a
            [Picea mariana]
            Length = 86

Frame  1 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 86
                       0          20         40          60         80

  Plus Strand HSPs:

 Score = 316 (111.2 bits), Expect = 2.4e-27, P = 2.4e-27
 Identities = 62/83 (74%), Positives = 75/83 (90%), Frame = +1

Query:   157 YFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQ 336
             +FHKLRN ++ PI+NI+KLWSLVP++VK KA+ ++  PLIDVTQFGYFKVLGKG LP +Q
Sbjct:     1 HFHKLRNHYHCPIVNIEKLWSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP-SQ 58

Query:   337 PVVVKAKLISKIAEKKIKEAGGA 405
             P+VVKAKLISK+AEKKIKEAGGA
Sbjct:    59 PIVVKAKLISKLAEKKIKEAGGA 81


 >gi|4104078|gb|AAD01931.1|  (AF031466) ribosomal protein rpl-27 [Entamoeba
            dispar]
            Length = 107

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |        |         |        |        |         |   | 107
                       0       20        40       60       80       100

  Plus Strand HSPs:

 Score = 277 (97.5 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 54/103 (52%), Positives = 69/103 (66%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNKF 183
             R++RGHVS G+GRIGKHRK  GGRGNAGG HH +  F  + P  FGK GMR FH   NK+
Sbjct:     4 RRRRGHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPENFGKHGMRVFHLKANKY 63

Query:   184 YSPILNIDKLWSLVPQEVKDK---ASKENKAPLID-VTQFGYF 300
             Y P +N+D LWSLV ++V+ +   A    + P+ID VT +  F
Sbjct:    64 YCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVTWYSRF 106


 >gi|2996179|gb|AAC32179.1|  (AF051765) putative 60S ribosomal protein L27a
            [Picea mariana]
            Length = 71

Frame  1 hits (HSPs):   ______________________________________________    
                        __________________________________________________
Database sequence:     |             |             |             |        | 71
                       0            20            40            60

  Plus Strand HSPs:

 Score = 259 (91.2 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 53/68 (77%), Positives = 62/68 (91%), Frame = +1

Query:   202 IDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEK 381
             I+KLWSLVP++VK KA+ ++  PLIDVTQFGYFKVLGKG LP +QP+VVKAKLISK+AEK
Sbjct:     1 IEKLWSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP-SQPIVVKAKLISKLAEK 58

Query:   382 KIKEAGGA 405
             KIKEAGGA
Sbjct:    59 KIKEAGGA 66


 >gi|2996177|gb|AAC32178.1|  (AF051764) putative 60S ribosomal protein L27a
            [Picea mariana]
            Length = 67

Frame  1 hits (HSPs):   ______________________________________________    
                        __________________________________________________
Database sequence:     |              |              |              |     | 67
                       0             20             40             60

  Plus Strand HSPs:

 Score = 244 (85.9 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 50/64 (78%), Positives = 58/64 (90%), Frame = +1

Query:   214 WSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKE 393
             WSLVP++VK KA+ ++  PLIDVTQFGYFKVLGKG LP +QP+VVKAKLISK+AEKKIKE
Sbjct:     1 WSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP-SQPIVVKAKLISKLAEKKIKE 58

Query:   394 AGGA 405
             AGGA
Sbjct:    59 AGGA 62


 >gi|8698743|gb|AAF78501.1|AC012187_21  (AC012187) Contains similarity to 60S
            ribosomal protein L27a from Panax ginseng gb|AB042856 and contains
            a ribosomal protein L15 PF|00256 domain. [Arabidopsis thaliana]
            Length = 104

Frame  1 hits (HSPs):      ____________________________________________   
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 104
                       0        20       40        60       80       100

  Plus Strand HSPs:

 Score = 136 (47.9 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 35/77 (45%), Positives = 44/77 (57%), Frame = +1

Query:   112 FDKYR--PGFFGK--VGMRYFHKLRNKFYSPILNIDKLWSLVPQE--VKDKASKENKAPL 273
             F K+R  PG  G   VGMRYFHKLRNKFY  I+N+DKLWS+V  +  + +      KA L
Sbjct:    22 FGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMVLGKGFLPENKPVVVKAKL 81

Query:   274 IDVTQFGYFKVLGKGVL 324
             +  T     K  G  V+
Sbjct:    82 VSNTDEKKIKEAGSAVV 98

 Score = 128 (45.1 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
 Identities = 26/34 (76%), Positives = 29/34 (85%), Frame = +1

Query:   304 VLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGA 405
             VLGKG LP+N+PVVVKAKL+S   EKKIKEAG A
Sbjct:    63 VLGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSA 96

 Score = 123 (43.3 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
 Identities = 25/41 (60%), Positives = 28/41 (68%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAG-GMHHHRILFDKY 123
             R  R HVS GHGR GKHRK PG RGNAG GM +   L +K+
Sbjct:     9 RNLREHVSVGHGRFGKHRKLPGSRGNAGVGMRYFHKLRNKF 49


 >gi|11436069  ref|XP_006092.1| ribosomal protein L27a [Homo sapiens]
            Length = 91

Frame  1 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 91
                       0         20         40         60         80

  Plus Strand HSPs:

 Score = 232 (81.7 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 47/86 (54%), Positives = 66/86 (76%), Frame = +1

Query:   151 MRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGV 321
             M+++H  RN+ + P +N+DKLW+LV ++ +  A+K NK   AP+IDV + GY+KVLGKG 
Sbjct:     1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGKGK 59

Query:   322 LPQNQPVVVKAKLISKIAEKKIKEAGGA 405
             LP+ QPV+VKAK  S+ AE+KIK  GGA
Sbjct:    60 LPK-QPVIVKAKFFSRRAEEKIKSVGGA 86


 >gi|3914721|sp|Q29333|RL2A_PIG  60S RIBOSOMAL PROTEIN L27A
            Length = 54

Frame  1 hits (HSPs):          ___________________________________________
                        __________________________________________________
Database sequence:     |                 |                  |             | 54
                       0                20                 40

  Plus Strand HSPs:

 Score = 229 (80.6 bits), Expect = 4.1e-18, P = 4.1e-18
 Identities = 40/46 (86%), Positives = 41/46 (89%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYRPGFFG 141
             RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKY  G+FG
Sbjct:     9 RKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHXGYFG 54


 >gi|3122688|sp|O26133|RL15_METTH  50S RIBOSOMAL PROTEIN L15P
            >gi|7440772|pir||C69131 ribosomal protein L15 - Methanobacterium
            thermoautotrophicum (strain Delta H) >gi|2621062|gb|AAB84534.1|
            (AE000796) ribosomal protein L27a (E.coli L15) [Methanothermobacter
            thermautotrophicus]
            Length = 146

Frame  1 hits (HSPs):      _____________________________________________  
Annotated Domains:        ______________________________________________  
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100
__________________

Annotated Domains:
   PFAM                 L15: Ribosomal protein L15               109..140
   PRODOM               PD064572: RL15(6)                        7..104
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      109..139
__________________


  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 51/132 (38%), Positives = 74/132 (56%), Frame = +1

Query:     7 KKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             + RG  + G G   K R   H GGRG AGG  HH     KY P  FGK G +   KL  +
Sbjct:    10 RMRGSRTVGGGCSKKRRGAGHRGGRGQAGGHKHHWTWIVKYDPKHFGKYGFKRPQKLIKR 69

Query:   181 FYSPILNIDKLWSLVPQEV-KDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
               +  +N+  L  ++P+ + +  AS+E+   ++DV   G+ KVLG G +   +PV +KA 
Sbjct:    70 LET--VNLAYLDEMIPELLERGVASEEDGMVVLDVRDLGFEKVLGSGRI--TRPVHLKAY 125

Query:   358 LISKIAEKKIKEAGG 402
               S+ A +KI+EAGG
Sbjct:   126 EFSRSATEKIEEAGG 140


 >gi|1710492|sp|P54047|RL15_METJA  50S RIBOSOMAL PROTEIN L15P
            >gi|2119132|pir||E64359 ribosomal protein L15 - Methanococcus
            jannaschii >gi|1591179|gb|AAB98466.1| (U67497) LSU ribosomal
            protein L15P (rplO) [Methanococcus jannaschii]
            Length = 143

Frame  1 hits (HSPs):     ______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 29..38
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 117..138
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..141
   PFAM                 L15: Ribosomal protein L15               107..138
   PRODOM               PD064572: RL15(6)                        6..102
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..137
__________________


  Plus Strand HSPs:

 Score = 183 (64.4 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 50/133 (37%), Positives = 73/133 (54%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRN 177
             +K RG  + G G   K R   + GGRG AGG  H      KY P +FGK G +    L  
Sbjct:     9 KKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGFKRHPSLVK 68

Query:   178 KFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             +  +  +N+ +L  +V +   DK  KE+   ++DV + GY KVLGKG +    P++VKA 
Sbjct:    69 RLET--INVGELEEIVLKN-PDKFEKEDDKFVVDVIELGYEKVLGKGKV--TIPMIVKAV 123

Query:   358 LISKIAEKKIKEAGG 402
              +S+ A +KI+  GG
Sbjct:   124 EVSEKAREKIEAVGG 138


 >gi|132684|sp|P14032|RL15_METVA  50S RIBOSOMAL PROTEIN L15P
            >gi|71194|pir||R6MX15 ribosomal protein L15 - Methanococcus
            vannielii >gi|44770|emb|CAA34702.1| (X16720) rpL15 (AA 1-143)
            [Methanococcus vannielii]
            Length = 143

Frame  1 hits (HSPs):      _____________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100
__________________

Annotated Domains:
   BLOCKS               BL00475A: Ribosomal protein L15 proteins 7..21
   BLOCKS               BL00475B: Ribosomal protein L15 proteins 29..38
   BLOCKS               BL00475C: Ribosomal protein L15 proteins 98..114
   BLOCKS               BL00475D: Ribosomal protein L15 proteins 117..138
   DOMO                 DM00524: RIBOSOMALPROTEINL15             3..141
   PFAM                 L15: Ribosomal protein L15               107..138
   PRODOM               PD064572: RL15(6)                        5..102
   PRODOM               PD001167: RL15(14) RL2A(11) R18E(7)      107..137
__________________


  Plus Strand HSPs:

 Score = 180 (63.4 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 48/132 (36%), Positives = 74/132 (56%), Frame = +1

Query:     7 KKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKLRNK 180
             K+RG  + G+G   KHR   H GGRGNAG   H  +   K+ P +FGK G      L  K
Sbjct:    10 KQRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPEYFGKYGFNRNPCLIKK 69

Query:   181 FYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKL 360
               +  +N+ +L   V  + KD    ++   +++ T+ G+ K+LGKG +  +  +VVKA  
Sbjct:    70 LET--INVGELEEYV-LKYKDAFKLKDGKVVVNATEIGFEKILGKGRI--STAMVVKAVE 124

Query:   361 ISKIAEKKIKEAGG 402
              S+ A++KI+ AGG
Sbjct:   125 FSEGAKEKIEAAGG 138


 >gi|7021396|gb|AAF35324.1|  (AF222926) ribosomal protein L27a [Penaeus monodon]
            Length = 49

Frame  1 hits (HSPs):               ____________________________________  
                        __________________________________________________
Database sequence:     |                   |                   |          | 49
                       0                  20                  40

  Plus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 31/35 (88%), Positives = 31/35 (88%), Frame = +1

Query:     4 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI 108
             RK RGHVS GHGRIGKHRKHPGGRG AGGMH HRI
Sbjct:    13 RKLRGHVSHGHGRIGKHRKHPGGRGYAGGMHDHRI 47


 >gi|1881382|dbj|BAA19416.1|  (AB001584) ribosomal protein L27a [Solanum
            melongena]
            Length = 58

Frame  1 hits (HSPs):            ____________________________________     
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40

  Plus Strand HSPs:

 Score = 165 (58.1 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 32/42 (76%), Positives = 38/42 (90%), Frame = +1

Query:   280 VTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGA 405
             VTQ+GY KVLGKGVLP+N+ VVVKAKL+SK AE+KIK+ GGA
Sbjct:    12 VTQYGYLKVLGKGVLPENKAVVVKAKLVSKNAERKIKDGGGA 53


 >gi|6685880|sp|Q9YF98|RL15_AERPE  50S RIBOSOMAL PROTEIN L15P
            >gi|7440775|pir||F72725 probable ribosomal protein L15 APE0343 -
            Aeropyrum pernix  (strain K1) >gi|5103982|dbj|BAA79298.1|
            (AP000059) 158aa long hypothetical 50S ribosomal protein L15
            [Aeropyrum pernix]
            Length = 158

Frame  1 hits (HSPs):     ___________________________________________     
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 162 (57.0 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 48/135 (35%), Positives = 74/135 (54%), Frame = +1

Query:     1 NRKKRGHV-SAGHGRIGKHRKH--PGGRGNAGGMHHHRILFDKYRPGFFGKVGMRYFHKL 171
             +RK RG   +   GRIG+HRK    GG G AG   H      KY P ++GK G     ++
Sbjct:     9 SRKLRGRTRTMSWGRIGQHRKSGSKGGYGAAGLGKHEWTWTIKYAPTWYGKKGFNP-PRI 67

Query:   172 RNKFYSPILNIDKLWSLVPQ-EVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVV 348
             R       +N+ +L  +    E + KA KE+   ++++ + G  K+LG+G + +  P+ V
Sbjct:    68 RAGLEVTTINVGQLDEIAALLEAQGKAEKEDGKIVVNLEKLGIHKLLGEGRVAR--PLKV 125

Query:   349 KAKLISKIAEKKIKEAGG 402
                L S++A KKI+EAGG
Sbjct:   126 ITPLASELAIKKIEEAGG 143


 >gi|3914680|sp|O05643|RL15_SULAC  50S RIBOSOMAL PROTEIN L15P
            >gi|2052268|emb|CAA69099.1| (Y07778) ribosomal protein L15
            [Sulfolobus acidocaldarius]
            Length = 144

Frame  1 hits (HSPs):     _____________________________________________   
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100
__________________

Annotated Domains:
   PRODOM               PD064572: RL15(6)                        7..96
   PRODOM               PD065361: RL15_SULAC                     98..143
__________________


  Plus Strand HSPs:

 Score = 157 (55.3 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 43/134 (32%), Positives = 72/134 (53%), Frame = +1

Query:     1 NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFD-KYRPGFFGKVGMRYFHKLRN 177
             +RK RG+ + G G  G+HR      G   GMH  +  +  K+  G++GK G   F    +
Sbjct:     9 SRKYRGYRTHGWGTKGQHRDRGAQGGRQIGMHKEKWSWTVKFGEGWYGKHG---FRNPTS 65

Query:   178 KFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAK 357
             K  + I  + KL   +  + K K  +EN   ++D+ ++GY K+LG G L    P+V+K  
Sbjct:    66 KLVNAI-GLRKLQEYIDND-KIKIEEENGKKVVDLAKYGYDKLLGGGNL--RLPLVIKVA 121

Query:   358 LISKIAEKKIKEAGG 402
               ++ A++++KE GG
Sbjct:   122 KATEKAKERVKEIGG 136


WARNING:  HSPs involving 98 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.99

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.338   0.148   0.542  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.329   0.131   0.384  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.320   0.141   0.429  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.346   0.147   0.564  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.318   0.137   0.371  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.338   0.149   0.547  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      134       134       10.  73 3  12 22  0.11    33
                                                    30  0.098   36
   +2      0      135       135       10.  73 3  12 22  0.11    33
                                                    30  0.099   36
   +1      0      135       135       10.  73 3  12 22  0.11    33
                                                    30  0.099   36
   -1      0      135       135       10.  73 3  12 22  0.11    33
                                                    30  0.099   36
   -2      0      135       135       10.  73 3  12 22  0.11    33
                                                    30  0.099   36
   -3      0      134       134       10.  73 3  12 22  0.11    33
                                                    30  0.098   36


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  148
  No. of states in DFA:  576 (57 KB)
  Total size of DFA:  164 KB (192 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  160.78u 1.06s 161.84t  Elapsed: 00:00:28
  Total cpu time:  160.84u 1.13s 161.97t  Elapsed: 00:00:29
  Start:  Wed Jan 16 16:19:46 2002   End:  Wed Jan 16 16:20:15 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000