R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 61 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|3608481|gb|AAD13388.1| (AF088913) ribosomal protein L27a [Petunia x
hybrida]
Length = 150
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 150
0 50 100
Plus Strand HSPs:
Score = 329 (115.8 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 61/76 (80%), Positives = 67/76 (88%), Frame = +2
Query: 5 LFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASK---ENKAPLID 175
LFDKYHPG+FGKVGMRYFHKLRNKFY P +NIDKLWSLVPQ+VKDK + + APLID
Sbjct: 44 LFDKYHPGYFGKVGMRYFHKLRNKFYCPTVNIDKLWSLVPQDVKDKVAAGGAKGTAPLID 103
Query: 176 VTQFGYFKVLGKGVLP 223
VTQ+GYFKVLGKGVLP
Sbjct: 104 VTQYGYFKVLGKGVLP 119
>gi|7959355|dbj|BAA96068.1| (AB042856) 60S ribosomal protein L27a [Panax
ginseng]
Length = 146
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
Plus Strand HSPs:
Score = 325 (114.4 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 58/73 (79%), Positives = 66/73 (90%), Frame = +2
Query: 5 LFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQ 184
LFDKYHPG+FGKVGMRYFH+LRNKFY P++NIDKLWSL+PQE K+KA +N AP+IDVTQ
Sbjct: 44 LFDKYHPGYFGKVGMRYFHRLRNKFYCPVVNIDKLWSLLPQEAKEKADAQN-APVIDVTQ 102
Query: 185 FGYFKVLGKGVLP 223
GYFKVLGKG LP
Sbjct: 103 HGYFKVLGKGFLP 115
>gi|9295692|gb|AAF86998.1|AC005292_7 (AC005292) F26F24.13 [Arabidopsis
thaliana] >gi|11692928|gb|AAG40067.1|AF324716_1 (AF324716)
F26F24.13 [Arabidopsis thaliana]
Length = 146
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
Plus Strand HSPs:
Score = 320 (112.6 bits), Expect = 9.1e-28, P = 9.1e-28
Identities = 58/73 (79%), Positives = 67/73 (91%), Frame = +2
Query: 5 LFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQ 184
LFDKYHPG+FGKVGMRYFHKLRNKF+ PI+N+DKLWSLVP++VK K+SK+N PLIDVTQ
Sbjct: 44 LFDKYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDN-VPLIDVTQ 102
Query: 185 FGYFKVLGKGVLP 223
G+FKVLGKG LP
Sbjct: 103 HGFFKVLGKGHLP 115
>gi|1710530|sp|P49637|RL2A_ARATH 60S RIBOSOMAL PROTEIN L27A
>gi|2129719|pir||S71256 ribosomal protein L27a, cytosolic -
Arabidopsis thaliana >gi|1107487|emb|CAA63025.1| (X91959) 60S
ribosomal protein L27a [Arabidopsis thaliana]
>gi|12324756|gb|AAG52338.1|AC011663_17 (AC011663) 60S ribosomal
protein L27A; 82981-83421 [Arabidopsis thaliana]
>gi|12325037|gb|AAG52464.1|AC010796_3 (AC010796) 60S ribosomal
protein L27A; 71521-71081 [Arabidopsis thaliana]
Length = 146
Frame 2 hits (HSPs): __________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 27..36
BLOCKS BL00475C: Ribosomal protein L15 proteins 98..114
BLOCKS BL00475D: Ribosomal protein L15 proteins 119..140
DOMO DM00524: RIBOSOMALPROTEINL15 3..143
PFAM L15: Ribosomal protein L15 107..140
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..105
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 107..139
__________________
Plus Strand HSPs:
Score = 317 (111.6 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 57/73 (78%), Positives = 67/73 (91%), Frame = +2
Query: 5 LFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQ 184
LFDKYHPG+FGKVGMRYFHKLRNKF+ PI+N+DKLWSLVP++VK K++K+N PLIDVTQ
Sbjct: 44 LFDKYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDN-VPLIDVTQ 102
Query: 185 FGYFKVLGKGVLP 223
G+FKVLGKG LP
Sbjct: 103 HGFFKVLGKGHLP 115
>gi|3122699|sp|O01358|RL2A_OSCBR 60S RIBOSOMAL PROTEIN L27A (RIBOSOMAL PROTEIN
RPL-27) >gi|7440776|pir||T10266 ribosomal protein L27 - Oscheius
brevesophaga >gi|1906642|gb|AAB71725.1| (U90830) ribosomal protein
rpl-27 [Oscheius brevesophaga]
Length = 145
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): _______________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 27..36
BLOCKS BL00475C: Ribosomal protein L15 proteins 98..114
BLOCKS BL00475D: Ribosomal protein L15 proteins 118..139
PFAM L15: Ribosomal protein L15 107..139
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..105
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 107..138
__________________
Plus Strand HSPs:
Score = 253 (89.1 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 46/71 (64%), Positives = 56/71 (78%), Frame = +2
Query: 11 DKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFG 190
DKYHPG+FGKVGMR FH +N Y P +N+D+LW+LVP+E K K S E KAP+ID + G
Sbjct: 46 DKYHPGYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAE-KAPVIDCVKAG 104
Query: 191 YFKVLGKGVLP 223
YFKVLGKG+LP
Sbjct: 105 YFKVLGKGLLP 115
Score = 48 (16.9 bits), Expect = 8.5, Sum P(2) = 1.0
Identities = 9/10 (90%), Positives = 10/10 (100%), Frame = +3
Query: 225 FKVLGKGVLP 254
FKVLGKG+LP
Sbjct: 106 FKVLGKGLLP 115
Score = 47 (16.5 bits), Expect = 8.5, Sum P(2) = 1.0
Identities = 8/23 (34%), Positives = 12/23 (52%), Frame = +2
Query: 20 HPGFFGKVGMRYFHKLRNKFYSP 88
HPG G G ++ H++ Y P
Sbjct: 28 HPGGRGNAGGQHHHRINRDKYHP 50
>gi|1350711|sp|P48160|RL2A_DICDI 60S RIBOSOMAL PROTEIN L27A
>gi|7440771|pir||JE0320 ribosomal protein Ddl27a - slime mold
(Dictyostelium discoideum) >gi|790954|dbj|BAA08873.1| (D50338)
ribosomal protein [Dictyostelium discoideum]
Length = 148
Frame 2 hits (HSPs): __________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 27..36
BLOCKS BL00475C: Ribosomal protein L15 proteins 101..117
BLOCKS BL00475D: Ribosomal protein L15 proteins 121..142
DOMO DM00524: RIBOSOMALPROTEINL15 3..145
PFAM L15: Ribosomal protein L15 110..142
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..108
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 110..141
__________________
Plus Strand HSPs:
Score = 249 (87.7 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 43/74 (58%), Positives = 62/74 (83%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEV-KDKASK-ENKAPLIDVT 181
FDKYHPG+FGK+GMR+FH LRN+++ P ++++K+W+LVP+ V K A+K + AP++DVT
Sbjct: 45 FDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVT 104
Query: 182 QFGYFKVLGKGVLP 223
Q G+FKVLG G+LP
Sbjct: 105 QKGFFKVLGHGILP 118
>gi|6321335 ref|NP_011412.1| Ribosomal protein L28 (L29) (rp44) (YL24); Rpl28p
[Saccharomyces cerevisiae] >gi|71192|pir||R6BY29 ribosomal protein
L27a.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|3620|emb|CAA25729.1| (X01573) ribosomal protein L29
[Saccharomyces cerevisiae] >gi|172484|gb|AAA35003.1| (K01162)
ribosomal protein L29 [Saccharomyces cerevisiae]
>gi|1256572|gb|AAA96382.1| (U30497) CYH2 gene product [Cloning
vector pAS2-1] >gi|1322643|emb|CAA96808.1| (Z72625) ORF YGL103w
[Saccharomyces cerevisiae]
Length = 149
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
Plus Strand HSPs:
Score = 240 (84.5 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 44/74 (59%), Positives = 58/74 (78%), Frame = +2
Query: 11 DKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDK----ASKENKAPLIDV 178
DKYHPG+FGKVGMRYFHK + F+ P+LN+DKLW+L+P++ +D+ ASKE AP+ID
Sbjct: 46 DKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKET-APVIDT 104
Query: 179 TQFGYFKVLGKGVLP 223
GY K+LGKG +P
Sbjct: 105 LAAGYGKILGKGRIP 119
>gi|132847|sp|P02406|RL28_YEAST 60S RIBOSOMAL PROTEIN L28 (L27A) (L29) (YL24)
(RP62)
Length = 149
Frame 2 hits (HSPs): _________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
__________________
Annotated Domains:
DOMO DM00524: RIBOSOMALPROTEINL15 2..145
Entrez Domain: NUCLEAR LOCALIZATION SIGNAL. 7..13
Entrez Domain: NUCLEAR LOCALIZATION SIGNAL. 24..30
PFAM L15: Ribosomal protein L15 110..142
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..107
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 110..141
__________________
Plus Strand HSPs:
Score = 240 (84.5 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 44/74 (59%), Positives = 58/74 (78%), Frame = +2
Query: 11 DKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDK----ASKENKAPLIDV 178
DKYHPG+FGKVGMRYFHK + F+ P+LN+DKLW+L+P++ +D+ ASKE AP+ID
Sbjct: 46 DKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKET-APVIDT 104
Query: 179 TQFGYFKVLGKGVLP 223
GY K+LGKG +P
Sbjct: 105 LAAGYGKILGKGRIP 119
>gi|132846|sp|P18445|RL2A_RAT 60S RIBOSOMAL PROTEIN L27A >gi|71190|pir||R5RTLA
ribosomal protein L27a, cytosolic [validated] - rat
>gi|57696|emb|CAA36947.1| (X52733) ribosomal protein L27a (AA 1 -
148) [Rattus rattus] >gi|227227|prf||1617101A ribosomal protein
L27a [Rattus norvegicus]
Length = 148
Frame 2 hits (HSPs): __________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
PFAM L15: Ribosomal protein L15 109..141
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..107
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 109..140
__________________
Plus Strand HSPs:
Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 42/74 (56%), Positives = 57/74 (77%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVT 181
FDKYHPG+FGKVGMR++H RN+ + P +N+DKLW+LV ++ + A+K AP+IDV
Sbjct: 45 FDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVV 104
Query: 182 QFGYFKVLGKGVLP 223
+ GY+KVLGKG LP
Sbjct: 105 RSGYYKVLGKGKLP 118
>gi|1263104|emb|CAA65760.1| (X97045) ORF [Bos taurus]
Length = 165
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
Plus Strand HSPs:
Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 44/74 (59%), Positives = 59/74 (79%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDV 178
FDKYHPG+FGKVGMR++H RN+ + P +N+DKLW+LV ++ + A+K NK AP+IDV
Sbjct: 52 FDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDV 110
Query: 179 TQFGYFKVLGKGVLP 223
+ GY+KVLGKG LP
Sbjct: 111 VRSGYYKVLGKGKLP 125
>gi|132845|sp|P08978|RL28_NEUCR 60S RIBOSOMAL PROTEIN L28 (L27A) (L29) (CRP1)
>gi|71193|pir||R6NC7A ribosomal protein L27a.e - Neurospora crassa
>gi|2991|emb|CAA29635.1| (X06320) put. ribosomal protein
[Neurospora crassa] >gi|2993|emb|CAA31630.1| (X13254) put.
ribosomal protein (AA 1-149) [Neurospora crassa]
>gi|11595625|emb|CAC18245.1| (AL451018) ribosomal protein L27a.e
[Neurospora crassa]
Length = 149
Frame 2 hits (HSPs): _________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
__________________
Annotated Domains:
DOMO DM00524: RIBOSOMALPROTEINL15 3..146
PFAM L15: Ribosomal protein L15 111..143
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..108
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 111..142
__________________
Plus Strand HSPs:
Score = 235 (82.7 bits), Expect = 9.3e-19, P = 9.3e-19
Identities = 44/74 (59%), Positives = 56/74 (75%), Frame = +2
Query: 11 DKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDK---ASKENKAPLIDVT 181
DKYHPG+FGKVGMR+FH LRN ++PILNI+KLW+LVP E ++K + AP+ID+
Sbjct: 46 DKYHPGYFGKVGMRHFHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLL 105
Query: 182 QFGYFKVLGKGVLP 223
GY K+LGKG LP
Sbjct: 106 SHGYAKLLGKGRLP 119
>gi|4506625 ref|NP_000981.1| ribosomal protein L27a [Homo sapiens]
>gi|1173017|sp|P46776|RL2A_HUMAN 60S RIBOSOMAL PROTEIN L27A
>gi|1362930|pir||S55914 ribosomal protein L27a - human
>gi|550017|gb|AAA85656.1| (U14968) ribosomal protein L27a [Homo
sapiens] >gi|4760602|dbj|BAA77361.1| (AB020236) ribosomal protein
L27A [Homo sapiens] >gi|1096940|prf||2113200C ribosomal protein
L27a [Homo sapiens]
Length = 148
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 235 (82.7 bits), Expect = 9.3e-19, P = 9.3e-19
Identities = 43/74 (58%), Positives = 59/74 (79%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDV 178
FDKYHPG+FGKVGM+++H RN+ + P +N+DKLW+LV ++ + A+K NK AP+IDV
Sbjct: 45 FDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDV 103
Query: 179 TQFGYFKVLGKGVLP 223
+ GY+KVLGKG LP
Sbjct: 104 VRSGYYKVLGKGKLP 118
>gi|1710529|sp|P36585|R28A_SCHPO 60S RIBOSOMAL PROTEIN L28-A (L27A) (L29)
>gi|101072|pir||S25593 60s ribosomal protein l27a - fission yeast
(Schizosaccharomyces pombe) >gi|2119130|pir||S60002 ribosomal
protein L27a.e.2 - fission yeast (Schizosaccharomyces pombe)
>gi|5057|emb|CAA40492.1| (X57207) ribosomal protein L29
[Schizosaccharomyces pombe] >gi|1150623|emb|CAA56901.1| (X80929)
rpgL29 [Schizosaccharomyces pombe] >gi|3859085|emb|CAA21962.1|
(AL033406) 60s ribosomal protein L27a.2/L28A [Schizosaccharomyces
pombe]
Length = 148
Frame 2 hits (HSPs): __________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
PFAM L15: Ribosomal protein L15 110..142
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..107
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 110..141
__________________
Plus Strand HSPs:
Score = 234 (82.4 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 43/74 (58%), Positives = 56/74 (75%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVT 181
FDKYHPG+FGKVGMR FH ++N + P +N+D+LW+L+P E +DK +N AP+I+V
Sbjct: 45 FDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVL 104
Query: 182 QFGYFKVLGKGVLP 223
Q GY KVLGKG LP
Sbjct: 105 QSGYGKVLGKGRLP 118
>gi|12230515|sp|P57728|R28B_SCHPO 60S RIBOSOMAL PROTEIN L28-B
>gi|2119131|pir||S60001 60s ribosomal protein ll28B 27a - fission
yeast (Schizosaccharomyces pombe) >gi|547474|emb|CAA85731.1|
(Z37501) Rpl29p [Schizosaccharomyces pombe]
>gi|4176528|emb|CAA22884.1| (AL035263) 60s ribosomal protein ll28B
27a [Schizosaccharomyces pombe]
Length = 148
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 233 (82.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 43/74 (58%), Positives = 56/74 (75%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVT 181
FDKYHPG+FGKVGMR FH ++N + P +N+D+LW+LVP E ++K +N AP+I+V
Sbjct: 45 FDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVL 104
Query: 182 QFGYFKVLGKGVLP 223
Q GY KVLGKG LP
Sbjct: 105 QSGYGKVLGKGRLP 118
>gi|2500274|sp|P78987|RL2A_ERYGR 60S RIBOSOMAL PROTEIN L27A (L29)
>gi|1865792|emb|CAA72204.1| (Y11394) 60S ribosomal protein L29
(L27A) [Blumeria graminis f. sp. hordei]
Length = 149
Frame 2 hits (HSPs): _________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 27..36
BLOCKS BL00475C: Ribosomal protein L15 proteins 102..118
BLOCKS BL00475D: Ribosomal protein L15 proteins 122..143
PFAM L15: Ribosomal protein L15 111..143
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..108
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 111..142
__________________
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 41/74 (55%), Positives = 55/74 (74%), Frame = +2
Query: 11 DKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKD---KASKENKAPLIDVT 181
DKYHPG+FGKVGMRYFHK N F+ P+LN++KLWSL+P E ++ ++ + P+ID+
Sbjct: 46 DKYHPGYFGKVGMRYFHKQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLL 105
Query: 182 QFGYFKVLGKGVLP 223
GY KVLGKG +P
Sbjct: 106 PLGYSKVLGKGRIP 119
>gi|132844|sp|P14115|RL2A_MOUSE 60S RIBOSOMAL PROTEIN L27A (L29)
>gi|71191|pir||R5MS27 ribosomal protein L27a - mouse
>gi|50321|emb|CAA28678.1| (X05021) URF (homologous to yeast L29
ribosomal protein) [Mus musculus]
Length = 148
Frame 2 hits (HSPs): __________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 6..20
BLOCKS BL00475B: Ribosomal protein L15 proteins 26..35
BLOCKS BL00475C: Ribosomal protein L15 proteins 100..116
BLOCKS BL00475D: Ribosomal protein L15 proteins 120..141
PFAM L15: Ribosomal protein L15 109..141
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..107
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 109..140
__________________
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 43/74 (58%), Positives = 58/74 (78%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDV 178
FDKYHPG+FGKVGMR++H RN+ + P +N+DK W+LV ++ + A+K NK AP+IDV
Sbjct: 45 FDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAK-NKTGVAPIIDV 103
Query: 179 TQFGYFKVLGKGVLP 223
+ GY+KVLGKG LP
Sbjct: 104 VRSGYYKVLGKGKLP 118
>gi|4760604|dbj|BAA77362.1| (AB020237) ribosomal protein L27A [Mus musculus]
Length = 148
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 43/74 (58%), Positives = 58/74 (78%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDV 178
FDKYHPG+FGKVGMR++H RN+ + P +N+DK W+LV ++ + A+K NK AP+IDV
Sbjct: 45 FDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAK-NKTGVAPIIDV 103
Query: 179 TQFGYFKVLGKGVLP 223
+ GY+KVLGKG LP
Sbjct: 104 VRSGYYKVLGKGKLP 118
>gi|12584634|emb|CAC27402.1| (AJ305223) 60S ribosomal protein L27A or L22
[Platichthys flesus]
Length = 125
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 125
0 50 100
Plus Strand HSPs:
Score = 230 (81.0 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 40/74 (54%), Positives = 56/74 (75%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK--APLIDVT 181
FDKYHPG+FGKVGMR++H RN + P +N+DKLW+LV ++ + KE++ AP+ID
Sbjct: 22 FDKYHPGYFGKVGMRHYHLKRNTTHCPTINLDKLWTLVSEQTRLNYGKESEGPAPIIDAV 81
Query: 182 QFGYFKVLGKGVLP 223
+ GY+K+LGKG LP
Sbjct: 82 RAGYYKILGKGKLP 95
>gi|1350712|sp|P47830|RL2A_XENLA 60S RIBOSOMAL PROTEIN L27A (L22)
>gi|530785|emb|CAA45531.1| (X64207) ribosomal protein L22 [Xenopus
laevis] >gi|1095557|prf||2109274A ribosomal protein L22 [Xenopus
laevis]
Length = 148
Frame 2 hits (HSPs): __________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 6..20
BLOCKS BL00475B: Ribosomal protein L15 proteins 26..35
BLOCKS BL00475C: Ribosomal protein L15 proteins 100..116
BLOCKS BL00475D: Ribosomal protein L15 proteins 120..141
PFAM L15: Ribosomal protein L15 109..141
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..107
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 109..140
__________________
Plus Strand HSPs:
Score = 228 (80.3 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 40/74 (54%), Positives = 55/74 (74%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASK--ENKAPLIDVT 181
FDKYHPG+FGKVGMR++H +N+ + P +N+DKLW+LV ++ + +K E AP+ID
Sbjct: 45 FDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAV 104
Query: 182 QFGYFKVLGKGVLP 223
GY+KVLGKG LP
Sbjct: 105 HAGYYKVLGKGKLP 118
>gi|400993|sp|Q00454|RL2A_TETTH 60S RIBOSOMAL PROTEIN L27A (L29)
>gi|1078807|pir||A56403 ribosomal protein L27a.e - Tetrahymena
thermophila >gi|161842|gb|AAA30124.1| (M76718) rpL29 [Tetrahymena
thermophila]
Length = 149
Frame 2 hits (HSPs): _________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 29..38
BLOCKS BL00475C: Ribosomal protein L15 proteins 102..118
BLOCKS BL00475D: Ribosomal protein L15 proteins 122..143
Entrez mutagenized site: M->K,E: CONFERS CYLOHE 40
PFAM L15: Ribosomal protein L15 111..143
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 2..109
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 111..142
__________________
Plus Strand HSPs:
Score = 227 (79.9 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 41/74 (55%), Positives = 55/74 (74%), Frame = +2
Query: 5 LFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDK-ASKENKAPLIDVT 181
L +K+HPG++GK+GMR FH +N + P++NIDKLWSLV + K A + K P+IDVT
Sbjct: 46 LMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVT 105
Query: 182 QFGYFKVLGKGVLP 223
+ G+FKVLGKG LP
Sbjct: 106 KAGFFKVLGKGRLP 119
>gi|540075|gb|AAA73459.1| (U13207) large subunit ribosomal protein 29 [Euplotes
crassus] >gi|1093613|prf||2104279A ribosomal protein L29 [Euplotes
crassus]
Length = 147
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 226 (79.6 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 41/71 (57%), Positives = 54/71 (76%), Frame = +2
Query: 14 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFG 190
KYHPG GK GMR+FH +RN++Y P +N+ KLWSLV +E + KA + +K LIDV + G
Sbjct: 47 KYHPGHIGKHGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHG 106
Query: 191 YFKVLGKGVLP 223
Y+KVLGKG+LP
Sbjct: 107 YYKVLGKGLLP 117
>gi|1350705|sp|P48161|RL2A_EUPCR 60S RIBOSOMAL PROTEIN L27A (L29)
Length = 148
Frame 2 hits (HSPs): _________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 27..36
BLOCKS BL00475C: Ribosomal protein L15 proteins 100..116
BLOCKS BL00475D: Ribosomal protein L15 proteins 120..141
DOMO DM00524: RIBOSOMALPROTEINL15 3..144
PFAM L15: Ribosomal protein L15 109..141
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..107
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 109..140
__________________
Plus Strand HSPs:
Score = 226 (79.6 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 41/71 (57%), Positives = 54/71 (76%), Frame = +2
Query: 14 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKE-NKAPLIDVTQFG 190
KYHPG GK GMR+FH +RN++Y P +N+ KLWSLV +E + KA + +K LIDV + G
Sbjct: 47 KYHPGHIGKHGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHG 106
Query: 191 YFKVLGKGVLP 223
Y+KVLGKG+LP
Sbjct: 107 YYKVLGKGLLP 117
>gi|730551|sp|P41092|RL2A_DROME 60S RIBOSOMAL PROTEIN L27A 1
>gi|1071986|pir||JC2392 ribosomal protein L27a - fruit fly
(Drosophila melanogaster) >gi|397852|emb|CAA52601.1| (X74484)
ribosomal protein L27a [Drosophila melanogaster]
Length = 149
Frame 2 hits (HSPs): _________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 8..22
BLOCKS BL00475B: Ribosomal protein L15 proteins 28..37
BLOCKS BL00475C: Ribosomal protein L15 proteins 102..118
BLOCKS BL00475D: Ribosomal protein L15 proteins 122..143
DOMO DM00524: RIBOSOMALPROTEINL15 4..146
PFAM L15: Ribosomal protein L15 111..143
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 7..109
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 111..142
__________________
Plus Strand HSPs:
Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 43/74 (58%), Positives = 54/74 (72%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVT 181
FDKYHPG+FGKVGMR FH R + P +N+DKLWSLV E + KE KAP+ID+
Sbjct: 46 FDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLV 105
Query: 182 QFGYFKVLGKGVLP 223
+FGY+K+LG+G LP
Sbjct: 106 KFGYYKLLGRGHLP 119
>gi|2500272|sp|Q94530|RL2B_DROME 60S RIBOSOMAL PROTEIN L27A 2
>gi|7440770|pir||JC6202 ribosomal protein L27a - fruit fly
(Drosophila melanogaster) >gi|1575561|gb|AAC47472.1| (U66358)
RpL27a [Drosophila melanogaster] >gi|1881581|gb|AAC47475.1|
(U66357) ribosomal protein RpL27a [Drosophila melanogaster]
Length = 149
Frame 2 hits (HSPs): _________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 8..22
BLOCKS BL00475B: Ribosomal protein L15 proteins 28..37
BLOCKS BL00475C: Ribosomal protein L15 proteins 102..118
BLOCKS BL00475D: Ribosomal protein L15 proteins 122..143
PFAM L15: Ribosomal protein L15 111..143
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 7..109
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 111..142
__________________
Plus Strand HSPs:
Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 43/74 (58%), Positives = 54/74 (72%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVT 181
FDKYHPG+FGKVGMR FH R + P +N+DKLWSLV E + KE KAP+ID+
Sbjct: 46 FDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLV 105
Query: 182 QFGYFKVLGKGVLP 223
+FGY+K+LG+G LP
Sbjct: 106 KFGYYKLLGRGHLP 119
>gi|10727335|gb|AAF51006.2| (AE003576) RpL27A gene product [Drosophila
melanogaster]
Length = 282
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 282
0 50 100 150 200 250
Plus Strand HSPs:
Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 43/74 (58%), Positives = 54/74 (72%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKEN--KAPLIDVT 181
FDKYHPG+FGKVGMR FH R + P +N+DKLWSLV E + KE KAP+ID+
Sbjct: 179 FDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLV 238
Query: 182 QFGYFKVLGKGVLP 223
+FGY+K+LG+G LP
Sbjct: 239 KFGYYKLLGRGHLP 252
>gi|2500273|sp|Q27021|RL2A_TENMO 60S RIBOSOMAL PROTEIN L27A
>gi|1431618|emb|CAA67590.1| (X99204) ribosomal protein L27a
[Tenebrio molitor]
Length = 148
Frame 2 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 27..36
BLOCKS BL00475C: Ribosomal protein L15 proteins 101..117
BLOCKS BL00475D: Ribosomal protein L15 proteins 121..142
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..108
PRODOM PD064595: RL2A_TENMO 110..147
__________________
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 38/71 (53%), Positives = 54/71 (76%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASK--ENKAPLIDVT 181
FDKYHPG+FGK+GMR +H RN ++P +N+DKLW+LV ++ + K E KAP+ID+
Sbjct: 45 FDKYHPGYFGKLGMRNYHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIV 104
Query: 182 QFGYFKVLGKG 214
+ GY+K+LGKG
Sbjct: 105 KAGYYKLLGKG 115
>gi|2982333|gb|AAC32151.1| (AF051252) probable 60S ribosomal protein L27a
[Picea mariana]
Length = 86
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 86
0 20 40 60 80
Plus Strand HSPs:
Score = 215 (75.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 40/57 (70%), Positives = 50/57 (87%), Frame = +2
Query: 53 YFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLP 223
+FHKLRN ++ PI+NI+KLWSLVP++VK KA+ ++ PLIDVTQFGYFKVLGKG LP
Sbjct: 1 HFHKLRNHYHCPIVNIEKLWSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP 56
>gi|5921511|emb|CAB56512.1| (AJ249749) putative 60S ribosomal protein L27A
[Mortierella alpina]
Length = 147
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 211 (74.3 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 40/72 (55%), Positives = 51/72 (70%), Frame = +2
Query: 11 DKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKA-PLIDVTQF 187
DKYHPG+FGKVGMR FH RN + PI+N+D LWSLV ++ + A+K + P+ID +
Sbjct: 46 DKYHPGYFGKVGMRRFHLTRNGQHCPIVNLDTLWSLVSEQTRKNAAKNTEVVPVIDTLRA 105
Query: 188 GYFKVLGKGVLP 223
GY KVL KG LP
Sbjct: 106 GYGKVLAKGRLP 117
>gi|161844|gb|AAA30125.1| (M76719) rpL29 [Tetrahymena thermophila]
Length = 149
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 38/74 (51%), Positives = 52/74 (70%), Frame = +2
Query: 5 LFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDK-ASKENKAPLIDVT 181
L +K+HPG++GK+GMR FH +N + P++NIDKLW + K A + K P+IDVT
Sbjct: 46 LMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKLWRKETDATRQKYAEDKKKVPVIDVT 105
Query: 182 QFGYFKVLGKGVLP 223
+ G+FKVLGKG LP
Sbjct: 106 KAGFFKVLGKGRLP 119
>gi|11546004|gb|AAG37952.1| (AC087079) Hypothetical protein Y37E3.h
[Caenorhabditis elegans]
Length = 202
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _____ ________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 38/61 (62%), Positives = 50/61 (81%), Frame = +2
Query: 41 VGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVL 220
VGMR FH +N+ Y P +N+++LWSLVPQEV+DKA+ K+P+ID T+ GYFKVLGKG+L
Sbjct: 113 VGMRVFHLNKNQHYCPTVNVERLWSLVPQEVRDKATG-GKSPVIDCTKLGYFKVLGKGLL 171
Query: 221 P 223
P
Sbjct: 172 P 172
Score = 75 (26.4 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/19 (73%), Positives = 16/19 (84%), Frame = +2
Query: 11 DKYHPGFFGKV-GMRYFHK 64
DKYHPG+FGKV +RYF K
Sbjct: 46 DKYHPGYFGKVLFLRYFFK 64
Score = 48 (16.9 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 9/10 (90%), Positives = 10/10 (100%), Frame = +3
Query: 225 FKVLGKGVLP 254
FKVLGKG+LP
Sbjct: 163 FKVLGKGLLP 172
>gi|10178306|emb|CAC08391.1| (AL121886) dJ1028D15.2 (similar to RPL27A
(ribosomal protein L27a)) [Homo sapiens]
Length = 142
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Plus Strand HSPs:
Score = 191 (67.2 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 43/72 (59%), Positives = 55/72 (76%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDV 178
F+KY+PG+FGKVGMRY+ K RN+ S +DKLW+LV ++ + A+K NK APLIDV
Sbjct: 45 FNKYYPGYFGKVGMRYYLK-RNQTVS----LDKLWTLVSEQTQVNAAK-NKPGAAPLIDV 98
Query: 179 TQFGYFKVLGKGVLP 223
Q GY+KVLGK LP
Sbjct: 99 VQSGYYKVLGKEKLP 113
>gi|10305197|gb|AAG16278.1|AC016024_1 (AC016024) Ribosomal protein L27a copy 1
[Leishmania major]
Length = 219
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 30/69 (43%), Positives = 46/69 (66%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQF 187
FDKYHPG+FGK+GM ++H+ +N + P +N++ L L+ E KA+K P++D+
Sbjct: 119 FDKYHPGYFGKLGMDHYHRKKNPMWKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSS 178
Query: 188 GYFKVLGKG 214
GY K+LG G
Sbjct: 179 GYAKLLGNG 187
>gi|10305199|gb|AAG16280.1|AC016024_3 (AC016024) ribosomal protein L27a copy 2
[Leishmania major]
Length = 145
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 30/69 (43%), Positives = 46/69 (66%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQF 187
FDKYHPG+FGK+GM ++H+ +N + P +N++ L L+ E KA+K P++D+
Sbjct: 45 FDKYHPGYFGKLGMDHYHRKKNPMWKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSS 104
Query: 188 GYFKVLGKG 214
GY K+LG G
Sbjct: 105 GYAKLLGNG 113
>gi|11136707|gb|AAG31288.1|AC009805_1 (AC009805) Ribosomal protein L27a copy 1
[Leishmania major]
Length = 159
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 30/69 (43%), Positives = 46/69 (66%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQF 187
FDKYHPG+FGK+GM ++H+ +N + P +N++ L L+ E KA+K P++D+
Sbjct: 59 FDKYHPGYFGKLGMDHYHRKKNPMWKPTINLNNLSRLIAAEEAAKAAKGGTLPVVDLQSS 118
Query: 188 GYFKVLGKG 214
GY K+LG G
Sbjct: 119 GYAKLLGNG 127
>gi|6094046|sp|O15883|RL2A_TRYBB 60S RIBOSOMAL PROTEIN L27A (L29)
>gi|2232029|gb|AAB62182.1| (U96757) ribosomal protein L27a
[Trypanosoma brucei brucei]
Length = 145
Frame 2 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
__________________
Annotated Domains:
PFAM L15: Ribosomal protein L15 108..139
PRODOM PD002840: RL2A(13) RL28(3) O62581(1) 1..105
PRODOM PD172443: RL2A_TRYBB 107..144
__________________
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 32/71 (45%), Positives = 45/71 (63%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQF 187
F KYHPG+FGK GM ++HK +N + P +N+D L L+ ++ KA K P+ID+
Sbjct: 45 FRKYHPGYFGKCGMNHYHKKKNTTWKPTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLAN 104
Query: 188 GYFKVLGKGVL 220
GY K+LG G L
Sbjct: 105 GYSKLLGNGHL 115
>gi|11436069 ref|XP_006092.1| ribosomal protein L27a [Homo sapiens]
Length = 91
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 31/61 (50%), Positives = 46/61 (75%), Frame = +2
Query: 47 MRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENK---APLIDVTQFGYFKVLGKGV 217
M+++H RN+ + P +N+DKLW+LV ++ + A+K NK AP+IDV + GY+KVLGKG
Sbjct: 1 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVRSGYYKVLGKGK 59
Query: 218 LP 223
LP
Sbjct: 60 LP 61
>gi|2996179|gb|AAC32179.1| (AF051765) putative 60S ribosomal protein L27a
[Picea mariana]
Length = 71
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Plus Strand HSPs:
Score = 158 (55.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/42 (73%), Positives = 37/42 (88%), Frame = +2
Query: 98 IDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLP 223
I+KLWSLVP++VK KA+ ++ PLIDVTQFGYFKVLGKG LP
Sbjct: 1 IEKLWSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP 41
>gi|7674267|sp|O62581|RL2A_ENCCU 60S RIBOSOMAL PROTEIN L27A
>gi|3025760|gb|AAC68578.1| (AF054829) ribosomal protein L27a
[Encephalitozoon cuniculi]
Length = 147
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 149 (52.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 29/73 (39%), Positives = 45/73 (61%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVK-DKASKENKAPLIDVTQ 184
F ++HP + GK GMR +H+ N Y+ ++ +LW ++P+E + D K P+IDV +
Sbjct: 45 FTRFHPDYHGKRGMRVYHRKENSDYARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVRE 104
Query: 185 FGYFKVLGKGVLPL 226
FGY V+G G L L
Sbjct: 105 FGYHVVVG-GKLSL 117
>gi|2996177|gb|AAC32178.1| (AF051764) putative 60S ribosomal protein L27a
[Picea mariana]
Length = 67
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Plus Strand HSPs:
Score = 143 (50.3 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 28/38 (73%), Positives = 33/38 (86%), Frame = +2
Query: 110 WSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLP 223
WSLVP++VK KA+ ++ PLIDVTQFGYFKVLGKG LP
Sbjct: 1 WSLVPEDVKAKATADS-VPLIDVTQFGYFKVLGKGELP 37
>gi|4104078|gb|AAD01931.1| (AF031466) ribosomal protein rpl-27 [Entamoeba
dispar]
Length = 107
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/67 (44%), Positives = 41/67 (61%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDK---ASKENKAPLID- 175
F +HP FGK GMR FH NK+Y P +N+D LWSLV ++V+ + A + P+ID
Sbjct: 40 FTTFHPENFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDC 99
Query: 176 VTQFGYF 196
VT + F
Sbjct: 100 VTWYSRF 106
>gi|8698743|gb|AAF78501.1|AC012187_21 (AC012187) Contains similarity to 60S
ribosomal protein L27a from Panax ginseng gb|AB042856 and contains
a ribosomal protein L15 PF|00256 domain. [Arabidopsis thaliana]
Length = 104
Frame 2 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | | 104
0 20 40 60 80 100
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 34/77 (44%), Positives = 43/77 (55%), Frame = +2
Query: 8 FDKYH--PGFFGK--VGMRYFHKLRNKFYSPILNIDKLWSLVPQE--VKDKASKENKAPL 169
F K+ PG G VGMRYFHKLRNKFY I+N+DKLWS+V + + + KA L
Sbjct: 22 FGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMVLGKGFLPENKPVVVKAKL 81
Query: 170 IDVTQFGYFKVLGKGVL 220
+ T K G V+
Sbjct: 82 VSNTDEKKIKEAGSAVV 98
>gi|12580751|emb|CAC27069.1| (AJ010592) 60S ribosomal protein L27A [Guillardia
theta]
Length = 144
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Frame = +2
Query: 8 FDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQF 187
F+KYH FGK GMRY+ KL+ ++ +N+DK+ + + + +N + D++
Sbjct: 45 FEKYHKKHFGKTGMRYYRKLKQNNFNKSINLDKISDKLVKNMH--LHTKNSSDSFDLSLI 102
Query: 188 GYFKVLGKG 214
G KVLG+G
Sbjct: 103 GMSKVLGRG 111
>gi|1710492|sp|P54047|RL15_METJA 50S RIBOSOMAL PROTEIN L15P
>gi|2119132|pir||E64359 ribosomal protein L15 - Methanococcus
jannaschii >gi|1591179|gb|AAB98466.1| (U67497) LSU ribosomal
protein L15P (rplO) [Methanococcus jannaschii]
Length = 143
Frame 2 hits (HSPs): _______________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 29..38
BLOCKS BL00475C: Ribosomal protein L15 proteins 98..114
BLOCKS BL00475D: Ribosomal protein L15 proteins 117..138
DOMO DM00524: RIBOSOMALPROTEINL15 3..141
PFAM L15: Ribosomal protein L15 107..138
PRODOM PD064572: RL15(6) 6..102
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 107..137
__________________
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 25/67 (37%), Positives = 38/67 (56%), Frame = +2
Query: 14 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGY 193
KY P +FGK G + L + + +N+ +L +V + DK KE+ ++DV + GY
Sbjct: 49 KYCPDYFGKYGFKRHPSLVKRLET--INVGELEEIVLKN-PDKFEKEDDKFVVDVIELGY 105
Query: 194 FKVLGKG 214
KVLGKG
Sbjct: 106 EKVLGKG 112
>gi|3122688|sp|O26133|RL15_METTH 50S RIBOSOMAL PROTEIN L15P
>gi|7440772|pir||C69131 ribosomal protein L15 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621062|gb|AAB84534.1|
(AE000796) ribosomal protein L27a (E.coli L15) [Methanothermobacter
thermautotrophicus]
Length = 146
Frame 2 hits (HSPs): _______________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
__________________
Annotated Domains:
PFAM L15: Ribosomal protein L15 109..140
PRODOM PD064572: RL15(6) 7..104
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 109..139
__________________
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0028, P = 0.0027
Identities = 23/67 (34%), Positives = 38/67 (56%), Frame = +2
Query: 14 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEV-KDKASKENKAPLIDVTQFG 190
KY P FGK G + KL + + +N+ L ++P+ + + AS+E+ ++DV G
Sbjct: 49 KYDPKHFGKYGFKRPQKLIKRLET--VNLAYLDEMIPELLERGVASEEDGMVVLDVRDLG 106
Query: 191 YFKVLGKG 214
+ KVLG G
Sbjct: 107 FEKVLGSG 114
>gi|3914680|sp|O05643|RL15_SULAC 50S RIBOSOMAL PROTEIN L15P
>gi|2052268|emb|CAA69099.1| (Y07778) ribosomal protein L15
[Sulfolobus acidocaldarius]
Length = 144
Frame 2 hits (HSPs): ________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 144
0 50 100
__________________
Annotated Domains:
PRODOM PD064572: RL15(6) 7..96
PRODOM PD065361: RL15_SULAC 98..143
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.020, P = 0.020
Identities = 23/71 (32%), Positives = 38/71 (53%), Frame = +2
Query: 14 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGY 193
K+ G++GK G F +K + I + KL + + K K +EN ++D+ ++GY
Sbjct: 49 KFGEGWYGKHG---FRNPTSKLVNAI-GLRKLQEYIDND-KIKIEEENGKKVVDLAKYGY 103
Query: 194 FKVLGKGVLPL 226
K+LG G L L
Sbjct: 104 DKLLGGGNLRL 114
>gi|132684|sp|P14032|RL15_METVA 50S RIBOSOMAL PROTEIN L15P
>gi|71194|pir||R6MX15 ribosomal protein L15 - Methanococcus
vannielii >gi|44770|emb|CAA34702.1| (X16720) rpL15 (AA 1-143)
[Methanococcus vannielii]
Length = 143
Frame 2 hits (HSPs): _______________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
__________________
Annotated Domains:
BLOCKS BL00475A: Ribosomal protein L15 proteins 7..21
BLOCKS BL00475B: Ribosomal protein L15 proteins 29..38
BLOCKS BL00475C: Ribosomal protein L15 proteins 98..114
BLOCKS BL00475D: Ribosomal protein L15 proteins 117..138
DOMO DM00524: RIBOSOMALPROTEINL15 3..141
PFAM L15: Ribosomal protein L15 107..138
PRODOM PD064572: RL15(6) 5..102
PRODOM PD001167: RL15(14) RL2A(11) R18E(7) 107..137
__________________
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.059, P = 0.057
Identities = 20/67 (29%), Positives = 36/67 (53%), Frame = +2
Query: 14 KYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGY 193
K++P +FGK G L K + +N+ +L V + KD ++ +++ T+ G+
Sbjct: 49 KFNPEYFGKYGFNRNPCLIKKLET--INVGELEEYV-LKYKDAFKLKDGKVVVNATEIGF 105
Query: 194 FKVLGKG 214
K+LGKG
Sbjct: 106 EKILGKG 112
>gi|1881382|dbj|BAA19416.1| (AB001584) ribosomal protein L27a [Solanum
melongena]
Length = 58
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 58
0 20 40
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.084, P = 0.080
Identities = 14/16 (87%), Positives = 15/16 (93%), Frame = +2
Query: 176 VTQFGYFKVLGKGVLP 223
VTQ+GY KVLGKGVLP
Sbjct: 12 VTQYGYLKVLGKGVLP 27
>gi|6018877|emb|CAB58071.1| (AL121805) BACN4L24.b [Drosophila melanogaster]
>gi|7290395|gb|AAF45853.1| (AE003426) EG:96G10.8 gene product
[Drosophila melanogaster]
Length = 119
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 119
0 50 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.11, P = 0.10
Identities = 22/59 (37%), Positives = 31/59 (52%), Frame = +3
Query: 6 SLTSTTLGSSARSECAIFTSSATNSTLRSSTSTSSGPWFRKK*RTRPPRRTRRR*STSR 182
S TS + SS+ +SS+ +ST SS+S+SS +KK R R RRR +R
Sbjct: 43 STTSASTSSSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAAR 101
Score = 74 (26.0 bits), Expect = 0.11, P = 0.10
Identities = 25/72 (34%), Positives = 37/72 (51%), Frame = +3
Query: 6 SLTSTTLGSSARSECAIFTSSATNSTLRSSTSTSSGPWFRKK*---RTRPPRRTRRR*ST 176
S TS + SS+ +SS+ +ST SS+S+SS +KK R R RR RR
Sbjct: 43 STTSASTSSSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAARR 102
Query: 177 SRSSGTLRFSER 212
R++ R ++R
Sbjct: 103 RRAAAARRRAQR 114
>gi|6691836|emb|CAB65863.1| (AL024484) /prediction=(method:""genefinder"",
version:""084"", score:""16.22"")~/match=(desc:""LP11241.5prime LP
Drosophila melanogaster larval-early pupal pOT2 Drosophila
melanogaster cDNA clone LP11241 5prime, mRNA sequence"",
species:""Drosophila m>
Length = 118
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 118
0 50 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.11, P = 0.10
Identities = 22/59 (37%), Positives = 31/59 (52%), Frame = +3
Query: 6 SLTSTTLGSSARSECAIFTSSATNSTLRSSTSTSSGPWFRKK*RTRPPRRTRRR*STSR 182
S TS + SS+ +SS+ +ST SS+S+SS +KK R R RRR +R
Sbjct: 42 STTSASTSSSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAAR 100
Score = 74 (26.0 bits), Expect = 0.11, P = 0.10
Identities = 25/72 (34%), Positives = 37/72 (51%), Frame = +3
Query: 6 SLTSTTLGSSARSECAIFTSSATNSTLRSSTSTSSGPWFRKK*---RTRPPRRTRRR*ST 176
S TS + SS+ +SS+ +ST SS+S+SS +KK R R RR RR
Sbjct: 42 STTSASTSSSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAARR 101
Query: 177 SRSSGTLRFSER 212
R++ R ++R
Sbjct: 102 RRAAAARRRAQR 113
>gi|4432754|dbj|BAA25837.1| (AB007178) ribosomal protein L27a [Homo sapiens]
Length = 34
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | 34
0 20
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.14, P = 0.13
Identities = 16/33 (48%), Positives = 25/33 (75%), Frame = +2
Query: 92 LNIDKLWSLVPQEVKDKASKENK---APLIDVTQ 184
+N+DKLW+LV ++ + A+K NK AP+IDV +
Sbjct: 1 VNLDKLWTLVSEQTRVNAAK-NKTGAAPIIDVVR 33
WARNING: HSPs involving 61 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.331 0.134 0.406
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.331 0.150 0.484
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.336 0.146 0.472
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.143 0.532
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.320 0.141 0.388
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.153 0.521
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 84 83 10. 60 3 12 22 0.11 31
28 0.12 32
+2 0 84 83 10. 60 3 12 22 0.11 31
28 0.12 32
+1 0 84 83 10. 60 3 12 22 0.11 31
28 0.12 32
-1 0 84 84 10. 61 3 12 22 0.12 31
28 0.096 33
-2 0 84 83 10. 60 3 12 22 0.11 31
28 0.12 32
-3 0 84 83 10. 60 3 12 22 0.11 31
28 0.12 32
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 111
No. of states in DFA: 557 (55 KB)
Total size of DFA: 118 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 94.29u 1.08s 95.37t Elapsed: 00:00:25
Total cpu time: 94.33u 1.12s 95.45t Elapsed: 00:00:25
Start: Tue Feb 5 01:06:30 2002 End: Tue Feb 5 01:06:55 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000