BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu1455
(105 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379981|ref|NP_721936.1| putative PTS system, cellobios... 172 6e-42
gi|81096844|ref|ZP_00875172.1| Phosphotransferase system, l... 137 2e-31
gi|157075803|gb|ABV10486.1| PTS system, Lactose/Cellobiose ... 123 4e-27
gi|148988063|ref|ZP_01819526.1| PTS system, IIB component [... 119 8e-26
gi|15902322|ref|NP_357872.1| Phosphotransferase system suga... 118 1e-25
gi|15900238|ref|NP_344842.1| PTS system, IIB component [Str... 117 2e-25
gi|124520821|ref|ZP_01695904.1| phosphotransferase system, ... 115 1e-24
gi|116618036|ref|YP_818407.1| cellobiose-specific PTS syste... 100 4e-20
gi|69244099|ref|ZP_00602635.1| Phosphotransferase system, l... 97 2e-19
gi|50842626|ref|YP_055853.1| PTS system, lichenan-specific ... 66 6e-10
gi|150391879|ref|YP_001321928.1| phosphotransferase system,... 63 5e-09
gi|56965428|ref|YP_177160.1| PTS system, diacetylchitobiose... 58 2e-07
gi|150017521|ref|YP_001309775.1| phosphotransferase system,... 58 2e-07
gi|30262461|ref|NP_844838.1| PTS system, cellobiose-specifi... 56 8e-07
gi|52143026|ref|YP_083802.1| PTS system, diacetylchitobiose... 55 9e-07
gi|47570065|ref|ZP_00240725.1| PTS system, diacetylchitobio... 55 1e-06
gi|30020524|ref|NP_832155.1| PTS system, diacetylchitobiose... 55 1e-06
gi|70725189|ref|YP_252103.1| hypothetical protein SH0188 [S... 54 2e-06
gi|42781557|ref|NP_978804.1| PTS system, cellobiose-specifi... 54 2e-06
gi|152975566|ref|YP_001375083.1| phosphotransferase system ... 53 4e-06
gi|89207628|ref|ZP_01186165.1| Phosphotransferase system, l... 53 6e-06
>gi|24379981|ref|NP_721936.1| putative PTS system, cellobiose-specific IIB component
[Streptococcus mutans UA159]
gi|24377967|gb|AAN59242.1|AE014991_8 putative PTS system, cellobiose-specific IIB component
[Streptococcus mutans UA159]
Length = 105
Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats.
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MAKQALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQ 60
MAKQALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQ
Sbjct: 1 MAKQALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQ 60
Query: 61 TKMNFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
TKMNFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI
Sbjct: 61 TKMNFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
>gi|81096844|ref|ZP_00875172.1| Phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Streptococcus suis 89/1591]
gi|80977104|gb|EAP40659.1| Phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Streptococcus suis 89/1591]
Length = 104
Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/102 (74%), Positives = 87/102 (85%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ALIICAGGMSSS+IAKKT LL+EQG +EM+AVGVPEG K+I A YDLYL+SPQTKM
Sbjct: 3 KALIICAGGMSSSLIAKKTQTLLEEQGHKVEMNAVGVPEGGKKINAAEYDLYLISPQTKM 62
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
+FKQ +A K KPIVQIPPQAY+PIPMGIEKMAKLV +NI
Sbjct: 63 HFKQFEEAGKKVGKPIVQIPPQAYIPIPMGIEKMAKLVLDNI 104
>gi|157075803|gb|ABV10486.1| PTS system, Lactose/Cellobiose specific IIB subunit [Streptococcus
gordonii str. Challis substr. CH1]
Length = 104
Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats.
Identities = 69/102 (67%), Positives = 82/102 (80%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ALIICA GMSSS++AKKT L+ +GED+E+DA+ EG K I +DLYL+SPQTKM
Sbjct: 3 KALIICAAGMSSSLMAKKTTEFLKAKGEDVEVDAISATEGGKAIADAKFDLYLISPQTKM 62
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
+KQ DAAAK KPIVQIPPQAY+PIPMGIEKMA L+KENI
Sbjct: 63 YYKQFEDAAAKVGKPIVQIPPQAYIPIPMGIEKMANLIKENI 104
>gi|148988063|ref|ZP_01819526.1| PTS system, IIB component [Streptococcus pneumoniae SP6-BS73]
gi|147926527|gb|EDK77600.1| PTS system, IIB component [Streptococcus pneumoniae SP6-BS73]
Length = 104
Score = 119 bits (297), Expect = 8e-26, Method: Composition-based stats.
Identities = 66/102 (64%), Positives = 81/102 (79%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ALIICA GMSSS++A+KT L+E+G+DI +DA+ EG K I A +DLYLVSPQTKM
Sbjct: 3 KALIICAAGMSSSLMAQKTTEFLKEKGKDIVVDAISATEGGKAIAAAAFDLYLVSPQTKM 62
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
FKQ +A +K KP+VQIPPQAY+PIPMGIEKMA L+ ENI
Sbjct: 63 YFKQFEEAGSKAGKPVVQIPPQAYIPIPMGIEKMANLILENI 104
>gi|15902322|ref|NP_357872.1| Phosphotransferase system sugar-specific EII component
[Streptococcus pneumoniae R6]
gi|15457830|gb|AAK99082.1| Phosphotransferase system sugar-specific EII component
[Streptococcus pneumoniae R6]
Length = 113
Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats.
Identities = 65/102 (63%), Positives = 80/102 (78%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ALIICA GMSSS++A+KT L+ +G+DI +DA+ EG K I A +DLYLVSPQTKM
Sbjct: 12 KALIICAAGMSSSLMAQKTTEFLKGKGKDIVVDAISATEGGKAIAAAAFDLYLVSPQTKM 71
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
FKQ +A +K KP+VQIPPQAY+PIPMGIEKMA L+ ENI
Sbjct: 72 YFKQFEEAGSKAGKPVVQIPPQAYIPIPMGIEKMANLILENI 113
>gi|15900238|ref|NP_344842.1| PTS system, IIB component [Streptococcus pneumoniae TIGR4]
gi|111657877|ref|ZP_01408590.1| hypothetical protein SpneT_02000947 [Streptococcus pneumoniae
TIGR4]
gi|116517077|ref|YP_815797.1| PTS system, IIB component [Streptococcus pneumoniae D39]
gi|148983708|ref|ZP_01817027.1| PTS system, IIB component [Streptococcus pneumoniae SP3-BS71]
gi|149006055|ref|ZP_01829784.1| PTS system, IIB component [Streptococcus pneumoniae SP18-BS74]
gi|149013032|ref|ZP_01833898.1| PTS system, IIB component [Streptococcus pneumoniae SP19-BS75]
gi|149017998|ref|ZP_01834457.1| PTS system, IIB component [Streptococcus pneumoniae SP23-BS72]
gi|14971778|gb|AAK74482.1| PTS system, IIB component [Streptococcus pneumoniae TIGR4]
gi|116077653|gb|ABJ55373.1| PTS system, IIB component [Streptococcus pneumoniae D39]
gi|147762411|gb|EDK69372.1| PTS system, IIB component [Streptococcus pneumoniae SP18-BS74]
gi|147763067|gb|EDK70009.1| PTS system, IIB component [Streptococcus pneumoniae SP19-BS75]
gi|147923855|gb|EDK74967.1| PTS system, IIB component [Streptococcus pneumoniae SP3-BS71]
gi|147931562|gb|EDK82540.1| PTS system, IIB component [Streptococcus pneumoniae SP23-BS72]
Length = 104
Score = 117 bits (292), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/102 (63%), Positives = 80/102 (78%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ALIICA GMSSS++A+KT L+ +G+DI +DA+ EG K I A +DLYLVSPQTKM
Sbjct: 3 KALIICAAGMSSSLMAQKTTEFLKGKGKDIVVDAISATEGGKAIAAAAFDLYLVSPQTKM 62
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
FKQ +A +K KP+VQIPPQAY+PIPMGIEKMA L+ ENI
Sbjct: 63 YFKQFEEAGSKAGKPVVQIPPQAYIPIPMGIEKMANLILENI 104
>gi|124520821|ref|ZP_01695904.1| phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Bacillus coagulans 36D1]
gi|124497272|gb|EAY44836.1| phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Bacillus coagulans 36D1]
Length = 107
Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/103 (57%), Positives = 79/103 (76%)
Query: 3 KQALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTK 62
K+ALIICA GMSSS++AKKT + +G+DIE+DAV EG K IE ++DLYLVSPQTK
Sbjct: 2 KKALIICAAGMSSSLMAKKTTEFFKTKGKDIEVDAVSANEGNKMIEKGDFDLYLVSPQTK 61
Query: 63 MNFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
M F++L +A + KP+V IPPQAY+PIPMG+EK+ L+ + +
Sbjct: 62 MYFQKLKEAGERVGKPVVNIPPQAYIPIPMGVEKLGNLILQEL 104
>gi|116618036|ref|YP_818407.1| cellobiose-specific PTS system IIB component [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116096883|gb|ABJ62034.1| cellobiose-specific PTS system IIB component [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 105
Score = 99.8 bits (247), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/103 (51%), Positives = 70/103 (67%)
Query: 3 KQALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTK 62
K+ALIICA GMSSSM+AKKT + + DIE+DA+ EG+ I ++DL+LVSPQT
Sbjct: 2 KKALIICAAGMSSSMMAKKTTDYFKNKNIDIEVDAITATEGEDAIRNSDFDLFLVSPQTT 61
Query: 63 MNFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
M + + KP+V IP +AY+PIP GIE MA LV+E+I
Sbjct: 62 MYLEGFEKIGDEVGKPVVSIPFKAYIPIPTGIEGMANLVQEHI 104
>gi|69244099|ref|ZP_00602635.1| Phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Enterococcus faecium DO]
gi|68196556|gb|EAN10982.1| Phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Enterococcus faecium DO]
Length = 104
Score = 97.4 bits (241), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 71/103 (68%)
Query: 3 KQALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTK 62
K+ALIICA GMSSSM+A KT +++ E++ +DAV EG I+ ++DL+L+SPQT
Sbjct: 2 KKALIICAAGMSSSMMASKTTDFFKQKREEVLVDAVSATEGDNMIKNSDFDLFLISPQTT 61
Query: 63 MNFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
M + KP+V IP QAYVPIP GI+K+A++++ENI
Sbjct: 62 MFLDKFKKLGESVGKPVVSIPFQAYVPIPTGIQKLAEVIEENI 104
>gi|50842626|ref|YP_055853.1| PTS system, lichenan-specific IIB component [Propionibacterium
acnes KPA171202]
gi|50840228|gb|AAT82895.1| PTS system, lichenan-specific IIB component [Propionibacterium
acnes KPA171202]
Length = 103
Score = 65.9 bits (159), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 6 LIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKMNF 65
L++C+GGMSS ++ K Q+ GE ++ AVG + Q I +DL LV+PQ +
Sbjct: 5 LLVCSGGMSSGVVLKNLEKEFQKLGEPLQAKAVGSGQAQDEISTGEWDLVLVAPQVRNRL 64
Query: 66 KQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
K ++ PI IPP AY P+G ++ K VKE++
Sbjct: 65 KTFQQYVDRRGIPICAIPPVAYG--PLGGSELVKTVKEHL 102
>gi|150391879|ref|YP_001321928.1| phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Alkaliphilus metalliredigens QYMF]
gi|149951741|gb|ABR50269.1| phosphotransferase system, lactose/cellobiose-specific IIB subunit
[Alkaliphilus metalliredigens QYMF]
Length = 105
Score = 63.2 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 6 LIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKMNF 65
L++C+GGMSSS++ K L++QG + + AVG E + + +++D+ LV+PQ +
Sbjct: 5 LLVCSGGMSSSIVVKSIQKELEKQGVESNVKAVGTGEFEDEVNGEDWDIALVAPQVRHRM 64
Query: 66 KQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKE 103
AA + + PI I PQ Y PMG ++ K +KE
Sbjct: 65 ATFEVAAKEANVPIALIQPQGYT--PMGGPRVVKQIKE 100
>gi|56965428|ref|YP_177160.1| PTS system, diacetylchitobiose-specific enzyme II, B component
[Bacillus clausii KSM-K16]
gi|56911672|dbj|BAD66199.1| B component PTS system diacetylchitobiose-specific enzyme II
[Bacillus clausii KSM-K16]
Length = 102
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ ++ G+ +E+ A+G E +E +N+D+ +V+PQ K
Sbjct: 3 KVLFVCSGGMSSAIVVNTLKKEAEKHGQALEVKAIGSSEVAAELE-NNWDVVMVAPQIKH 61
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI--PMGIEKMAKLVK 102
F + A P IPPQAY P+ P ++ + +LVK
Sbjct: 62 RFDNIKKEADAYGVPCGPIPPQAYTPLGGPTLLKTLQELVK 102
>gi|150017521|ref|YP_001309775.1| phosphotransferase system, lactose/cellobiose-specific IIB
subunit [Clostridium beijerinckii NCIMB 8052]
gi|149903986|gb|ABR34819.1| phosphotransferase system, lactose/cellobiose-specific IIB
subunit [Clostridium beijerinckii NCIMB 8052]
Length = 102
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L++C+GGMSS+++ + ++G D+E+ AVG + + I+ + YDL LV+PQ +
Sbjct: 2 KVLMVCSGGMSSAIVVQAIKKEADKEGFDLEIKAVGTSDFEDEIQQNKYDLVLVAPQVRH 61
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
D A + ++ I P Y P+
Sbjct: 62 RLNGFKDQAKEYSLEVIAIEPMGYTPL 88
>gi|30262461|ref|NP_844838.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
anthracis str. Ames]
gi|47527752|ref|YP_019101.1| pts system, cellobiose-specific iib component, putative [Bacillus
anthracis str. 'Ames Ancestor']
gi|49185299|ref|YP_028551.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
anthracis str. Sterne]
gi|49477709|ref|YP_036579.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|65319755|ref|ZP_00392714.1| COG1440: Phosphotransferase system cellobiose-specific component
IIB [Bacillus anthracis str. A2012]
gi|118477850|ref|YP_895001.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
thuringiensis str. Al Hakam]
gi|30257092|gb|AAP26324.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
anthracis str. Ames]
gi|47502900|gb|AAT31576.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
anthracis str. 'Ames Ancestor']
gi|49179226|gb|AAT54602.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
anthracis str. Sterne]
gi|49329265|gb|AAT59911.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|118417075|gb|ABK85494.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
thuringiensis str. Al Hakam]
Length = 101
Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ +++G ++E+ A+G E ++ ++ + +D+ +V+PQ +
Sbjct: 2 KVLFVCSGGMSSAIVVNALKKEAEKKGVNMEVHAIGTSEVEEEVK-NGWDVVMVAPQVRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
F + A ++ P IPPQAY P+
Sbjct: 61 RFDSVKKFAEEESIPCGIIPPQAYTPL 87
>gi|52143026|ref|YP_083802.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
cereus E33L]
gi|51976495|gb|AAU18045.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
cereus E33L]
Length = 101
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ +++G ++E+ A+G E ++ ++ + +D+ +V+PQ +
Sbjct: 2 KVLFVCSGGMSSAIVVNALKKEAEKKGMNMEVHAIGTSEVEEEVK-NGWDVVMVAPQVRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
F + A ++ P IPPQAY P+
Sbjct: 61 RFDSVKKFAEEESIPCGIIPPQAYTPL 87
>gi|47570065|ref|ZP_00240725.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
cereus G9241]
gi|47553267|gb|EAL11658.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
cereus G9241]
Length = 101
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ +++G ++E+ A+G E ++ ++ + +D+ +V+PQ +
Sbjct: 2 KVLFVCSGGMSSAIVVNALKKEAEKKGMNMEVHAIGTSEMEEEVK-NGWDVVMVAPQVRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
F + A ++ P IPPQAY P+
Sbjct: 61 RFDSVKKFAEEESIPCGIIPPQAYTPL 87
>gi|30020524|ref|NP_832155.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
cereus ATCC 14579]
gi|29896075|gb|AAP09356.1| PTS system, diacetylchitobiose-specific IIB component [Bacillus
cereus ATCC 14579]
Length = 101
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ ++ G ++E+ A+G E ++ ++ + +D+ +V+PQ +
Sbjct: 2 KVLFVCSGGMSSAIVVNALKKEAEKNGVNMEVHAIGTNEVEEEVK-NGWDVVMVAPQIRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVKENI 105
F + A ++ P IPPQAY P+G + K V E I
Sbjct: 61 RFDSVKKFAEEESIPCGIIPPQAYT--PLGGPTLLKTVNELI 100
>gi|70725189|ref|YP_252103.1| hypothetical protein SH0188 [Staphylococcus haemolyticus JCSC1435]
gi|68445913|dbj|BAE03497.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 100
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ +++C+GGMSS+M+ ++ D+E+ AVG E + +IE NYDL LV+PQ K
Sbjct: 2 KVIMVCSGGMSSAMVVDSIKKQADKENYDLEIKAVGSEEFENQIE--NYDLGLVAPQVKH 59
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPIPMGIEKMAKLVK 102
+ + KP+ + P Y PI G K+ K +K
Sbjct: 60 RLDKFKKMGDEVGKPVDVVDPMGYTPI--GAPKILKQIK 96
>gi|42781557|ref|NP_978804.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
cereus ATCC 10987]
gi|42737480|gb|AAS41412.1| PTS system, cellobiose-specific IIB component, putative [Bacillus
cereus ATCC 10987]
Length = 101
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ +++G ++E+ A+G E ++ ++ + +D+ +V+PQ +
Sbjct: 2 KVLFVCSGGMSSAIVVNALKKEAEKKGMNMEVHAIGTNEVEEEVK-NGWDVVMVAPQVRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
F + A ++ P IPPQAY P+
Sbjct: 61 RFDSVKKFAEEEAIPCGIIPPQAYTPL 87
>gi|152975566|ref|YP_001375083.1| phosphotransferase system lactose/cellobiose-specific IIB subunit
[Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152024318|gb|ABS22088.1| phosphotransferase system lactose/cellobiose-specific IIB subunit
[Bacillus cereus subsp. cytotoxis NVH 391-98]
Length = 101
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSSS++ ++QG + + A+G E ++ ++ + +D+ +V+PQ +
Sbjct: 2 KVLFVCSGGMSSSIVVNALKKEAEKQGSSMVVHAIGTSEIEEEVK-NGWDVVMVAPQVRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
+ + A P IPPQAY P+
Sbjct: 61 RYDSIKKVAHAASIPCGIIPPQAYTPL 87
>gi|89207628|ref|ZP_01186165.1| Phosphotransferase system, lactose/cellobiose-specific IIB
subunit [Bacillus weihenstephanensis KBAB4]
gi|89154447|gb|EAR74479.1| Phosphotransferase system, lactose/cellobiose-specific IIB
subunit [Bacillus weihenstephanensis KBAB4]
Length = 101
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 4 QALIICAGGMSSSMIAKKTMALLQEQGEDIEMDAVGVPEGQKRIEADNYDLYLVSPQTKM 63
+ L +C+GGMSS+++ +++G ++E+ A+G E ++ ++ + +D+ +++PQ +
Sbjct: 2 KVLFVCSGGMSSAIVVNALKKEAEKKGMNMEVHAIGTSEVEEEVK-NGWDVVMIAPQVRH 60
Query: 64 NFKQLADAAAKKDKPIVQIPPQAYVPI 90
F + ++ P IPPQAY P+
Sbjct: 61 RFDAVKKLTEQESIPCGIIPPQAYTPL 87
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.315 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,051,186
Number of Sequences: 5470121
Number of extensions: 12718002
Number of successful extensions: 37096
Number of sequences better than 1.0e-05: 29
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 37067
Number of HSP's gapped (non-prelim): 29
length of query: 105
length of database: 1,894,087,724
effective HSP length: 73
effective length of query: 32
effective length of database: 1,494,768,891
effective search space: 47832604512
effective search space used: 47832604512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 124 (52.4 bits)