BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGN_0857 hypothetical protein
(312 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34541063|ref|NP_905542.1| ABC transporter, periplasmic s... 632 e-180
gi|160886405|ref|ZP_02067408.1| hypothetical protein BACOVA... 256 2e-66
gi|153808494|ref|ZP_01961162.1| hypothetical protein BACCAC... 231 4e-59
gi|29347083|ref|NP_810586.1| thiamine biosynthesis protein,... 228 3e-58
gi|60682577|ref|YP_212721.1| hypothetical protein BF3108 [B... 219 1e-55
gi|53714556|ref|YP_100548.1| putative thiamine biosynthesis... 215 4e-54
gi|134300615|ref|YP_001114111.1| NLPA lipoprotein [Desulfot... 180 1e-43
gi|83588970|ref|YP_428979.1| NLPA lipoprotein [Moorella the... 176 2e-42
gi|89210969|ref|ZP_01189350.1| NLPA lipoprotein [Halothermo... 162 3e-38
gi|89894273|ref|YP_517760.1| hypothetical protein DSY1527 [... 156 1e-36
gi|51893656|ref|YP_076347.1| putative thiamine biosynthesis... 137 7e-31
gi|11497708|ref|NP_068929.1| thiamine biosynthesis protein,... 124 7e-27
gi|163789950|ref|ZP_02184386.1| hypothetical protein CAT7_0... 120 1e-25
gi|119873096|ref|YP_931103.1| NLPA lipoprotein [Pyrobaculum... 102 4e-20
gi|94986503|ref|YP_594436.1| thiamine biosynthesis protein,... 84 1e-14
gi|91776911|ref|YP_546667.1| NLPA lipoprotein [Methylobacil... 82 5e-14
gi|83590805|ref|YP_430814.1| NLPA lipoprotein [Moorella the... 69 5e-10
gi|121535615|ref|ZP_01667421.1| NLPA lipoprotein [Thermosin... 65 8e-09
gi|162450212|ref|YP_001612579.1| putative periplasmic subst... 62 4e-08
gi|27464138|gb|AAO15990.1|AF514870_6 Abc1 [Lactobacillus pl... 62 6e-08
gi|121535485|ref|ZP_01667294.1| aliphatic sulfonates family... 59 3e-07
gi|158423985|ref|YP_001525277.1| ABC transporter periplasmi... 59 4e-07
gi|30021028|ref|NP_832659.1| Alkanesulfonates-binding prote... 59 4e-07
gi|168133826|ref|ZP_02577055.1| Alkanesulfonates-binding pr... 58 8e-07
gi|186684396|ref|YP_001867592.1| ABC-type nitrate/sulfonate... 58 8e-07
gi|39935112|ref|NP_947388.1| putative ABC transporter, peri... 58 8e-07
gi|91976585|ref|YP_569244.1| extracellular solute-binding p... 58 9e-07
gi|146276638|ref|YP_001166797.1| ABC-type nitrate/sulfonate... 58 9e-07
gi|89097938|ref|ZP_01170825.1| ABC transporter (substrate-b... 57 1e-06
gi|170745429|ref|YP_001766886.1| aliphatic sulfonates famil... 57 1e-06
gi|53687201|ref|ZP_00106830.2| COG0715: ABC-type nitrate/su... 57 1e-06
gi|163807132|ref|ZP_02198855.1| aliphatic sulfonates family... 57 1e-06
gi|52142602|ref|YP_084228.1| alkanesulfonates-binding prote... 57 2e-06
gi|145589368|ref|YP_001155965.1| ABC transporter, substrate... 57 2e-06
gi|163852823|ref|YP_001640866.1| aliphatic sulfonates famil... 57 2e-06
gi|75762928|ref|ZP_00742733.1| Alkanesulfonates-binding pro... 57 2e-06
gi|170728963|ref|YP_001762989.1| NMT1/THI5 like domain prot... 57 2e-06
gi|124521494|ref|ZP_01696415.1| aliphatic sulfonates family... 56 3e-06
gi|156450322|ref|ZP_02056702.1| aliphatic sulfonates family... 56 3e-06
gi|119962868|ref|YP_948274.1| putative sulfonate ABC transp... 56 4e-06
gi|167937243|ref|ZP_02524318.1| Alkanesulfonates-binding pr... 56 4e-06
gi|13475925|ref|NP_107495.1| hypothetical protein mlr7112 [... 56 4e-06
gi|150015500|ref|YP_001307754.1| ABC-type nitrate/sulfonate... 56 4e-06
gi|118478252|ref|YP_895403.1| alkanesulfonates-binding prot... 56 4e-06
gi|37519744|ref|NP_923121.1| hypothetical protein gll0175 [... 55 4e-06
gi|168158573|ref|ZP_02593806.1| sulfonate ABC transporter, ... 55 5e-06
gi|27381592|ref|NP_773121.1| ABC transporter substrate-bind... 55 7e-06
gi|86750444|ref|YP_486940.1| extracellular solute-binding p... 55 7e-06
gi|146282186|ref|YP_001172339.1| hypothetical protein PST_1... 55 8e-06
gi|163708238|ref|ZP_02125083.1| putative signal peptide pro... 55 9e-06
gi|91786272|ref|YP_547224.1| extracellular solute-binding p... 55 9e-06
gi|153953663|ref|YP_001394428.1| Predicted transporter prot... 55 9e-06
gi|154247141|ref|YP_001418099.1| NMT1/THI5 like domain prot... 55 9e-06
gi|163856870|ref|YP_001631168.1| putative sulfonate/nitrate... 55 9e-06
>gi|34541063|ref|NP_905542.1| ABC transporter, periplasmic substrate-binding protein, putative
[Porphyromonas gingivalis W83]
gi|34397378|gb|AAQ66441.1| ABC transporter, periplasmic substrate-binding protein, putative
[Porphyromonas gingivalis W83]
Length = 312
Score = 632 bits (1631), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/312 (99%), Positives = 311/312 (99%)
Query: 1 MKNFSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIY 60
MKNFSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIY
Sbjct: 1 MKNFSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIY 60
Query: 61 DSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLV 120
DSL LKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLV
Sbjct: 61 DSLRLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLV 120
Query: 121 MSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLR 180
MSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLR
Sbjct: 121 MSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLR 180
Query: 181 SGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYD 240
SGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYD
Sbjct: 181 SGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYD 240
Query: 241 LAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKL 300
LAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKL
Sbjct: 241 LAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKL 300
Query: 301 VPSDYTGKDLIR 312
VPSDYTGKDLIR
Sbjct: 301 VPSDYTGKDLIR 312
>gi|160886405|ref|ZP_02067408.1| hypothetical protein BACOVA_04416 [Bacteroides ovatus ATCC 8483]
gi|156108290|gb|EDO10035.1| hypothetical protein BACOVA_04416 [Bacteroides ovatus ATCC 8483]
Length = 325
Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/294 (45%), Positives = 187/294 (63%), Gaps = 4/294 (1%)
Query: 21 SCGNKK--SSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNER 78
SC +KK SS E L+LG MP++D LPF +A+ GIYDSLGL L I+ F S N+R
Sbjct: 17 SCQSKKGDSSFLPLTELQPLTLGMMPTLDGLPFHIAKTQGIYDSLGLDLTILSFNSANDR 76
Query: 79 DAAFHSGNVEGTVIDYTGA-AMQQAGGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKN 137
DAAF + ++G + DY A A+Q DL +++ DGYF ++SK+ LE LK KN
Sbjct: 77 DAAFQTRKIDGMITDYPSAVALQAIHHTDLGFILKNDGYFCFIVSKESNINQLEQLKEKN 136
Query: 138 LGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIA 197
+ +SRNTVIEY TD++++ AG+ +EI E+ ++PLRL+ML+ QIDA+ LPDP +IA
Sbjct: 137 IAVSRNTVIEYATDQLLSKAGIKHTEINMPEIGQLPLRLQMLQYNQIDASFLPDPAASIA 196
Query: 198 MADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNI 257
M SLVSTQ+LGI T F+ + EK+E I++L+ GY+L VDYI H +K +
Sbjct: 197 MNSKHRSLVSTQELGIDFTATAFSRKALNEKREEIELLITGYNLGVDYIKMHPQKEWEQV 256
Query: 258 LIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
LIE +GVPE L V LP Y ++P+ E + + I WL +P Y+ K+LI
Sbjct: 257 LIE-IGVPENLTGLVALPGYQKAKRPSAEAIDKAIHWLKENHRIPQTYSEKNLI 309
>gi|153808494|ref|ZP_01961162.1| hypothetical protein BACCAC_02788 [Bacteroides caccae ATCC 43185]
gi|149128816|gb|EDM20033.1| hypothetical protein BACCAC_02788 [Bacteroides caccae ATCC 43185]
Length = 322
Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 174/275 (63%), Gaps = 2/275 (0%)
Query: 38 LSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGA 97
L+LG MP+++ LPF +A+ GIYDSLGL L I+ F S N+RDA F +G ++G V DY A
Sbjct: 36 LTLGMMPTLEGLPFYIARSEGIYDSLGLDLTILPFNSANDRDAVFQTGQMDGMVTDYPSA 95
Query: 98 AMQQA-GGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINT 156
QA +L + + DGY ++SK+ E L KN+ +SRNTV+EY TD+++N
Sbjct: 96 ITLQAIHHTELGFIFKNDGYLCFIVSKESRINQPEQLIEKNIAVSRNTVVEYATDQLLNK 155
Query: 157 AGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVT 216
AG+ +E K E++++PLRL+ML+ QIDA+ LPDP +IAM SL+STQ+LGI
Sbjct: 156 AGIKYTETNKPEISQLPLRLQMLQYNQIDASFLPDPAASIAMNSKNKSLISTQELGIEFI 215
Query: 217 GAMFAGSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPD 276
F+ ++EK++ I++L+ GY+L V++I H + + +L+E +GVPE L + LP
Sbjct: 216 ATAFSRKALQEKRKEIELLITGYNLGVNHIKMHPQSEWKQVLME-IGVPENLTGLIALPT 274
Query: 277 YTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
Y +P+ E +++ WL A +P Y+ +LI
Sbjct: 275 YRKATRPSAEAIEKATQWLKANHRIPQTYSESNLI 309
>gi|29347083|ref|NP_810586.1| thiamine biosynthesis protein, putative [Bacteroides
thetaiotaomicron VPI-5482]
gi|29338981|gb|AAO76780.1| thiamine biosynthesis protein, putative [Bacteroides
thetaiotaomicron VPI-5482]
Length = 284
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 174/271 (64%), Gaps = 3/271 (1%)
Query: 43 MPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQA 102
+P++D LPF +A+ GIYDSLGL L I+ F S +RDAAF +++G + DY A QA
Sbjct: 2 LPTLDGLPFHIAKAQGIYDSLGLDLTILSFNSAYDRDAAFQFKSMDGMITDYPSAVTLQA 61
Query: 103 -GGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDE 161
DL ++++ DGYF ++SK+ L+ LK KN+ +S NT+IEY T +++N AG+ +
Sbjct: 62 IHHTDLGIILKHDGYFCFIVSKESGINQLQELKEKNIAVSHNTIIEYATGQLLNKAGISQ 121
Query: 162 SEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFA 221
+E+ K E+ ++PLRL+ML+ QIDA+ LPDP +IAM SL+STQ+LGI T F+
Sbjct: 122 AEVNKPEIAQLPLRLQMLQYDQIDASFLPDPAASIAMNARHRSLISTQELGIDFTVTAFS 181
Query: 222 GSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQ 281
I EK+ I++L+ GY+L +DYI H +K + +LIE +GVPE L + LP Y +
Sbjct: 182 REAINEKRREIELLITGYNLGIDYIKMHPQKEWKQVLIE-IGVPENLTGLIALPVYRKAE 240
Query: 282 KPTIEDLQQTIDWLHAKKLVPSDYTG-KDLI 311
+P+ + L + + WL +P Y+G K LI
Sbjct: 241 RPSADALDKAVTWLKTNNRIPQTYSGYKSLI 271
>gi|60682577|ref|YP_212721.1| hypothetical protein BF3108 [Bacteroides fragilis NCTC 9343]
gi|60494011|emb|CAH08803.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 281
Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 163/269 (60%)
Query: 43 MPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQA 102
MPS D LP +VA + GIYDSL +K++ + + S +RDAAF SG ++G + DY GA + QA
Sbjct: 1 MPSFDGLPSLVAVRQGIYDSLDIKIDFITYASATDRDAAFLSGKLDGMLTDYPGATLLQA 60
Query: 103 GGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDES 162
G L+LVM DG L+ SK + + LKGKN+ +S NT +EY TD ++ A L
Sbjct: 61 KGSRLRLVMETDGSLSLIASKKSNVRNPDDLKGKNISVSGNTFVEYATDEVMKRACLHPG 120
Query: 163 EITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAG 222
E+ K E+N IPLRL ML GQI A+ LP P IA+ DG +L++T+ +G+ TG +F+
Sbjct: 121 EVNKPEINNIPLRLMMLEDGQISASFLPGPATAIALNDGHTALLNTRQMGLRCTGIVFSE 180
Query: 223 SVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQK 282
I EK E I + GY+L V Y+ + + IL+++ G+ E + LPDY +
Sbjct: 181 KAITEKDEEIRRFITGYNLGVKYLQTRPQNEWTEILVKEFGLQEKAAMQIDLPDYRPATR 240
Query: 283 PTIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
P+ D+++ I WL +K +P Y G++L+
Sbjct: 241 PSYHDIEKIIAWLKSKGAIPDYYPGENLV 269
>gi|53714556|ref|YP_100548.1| putative thiamine biosynthesis protein [Bacteroides fragilis YCH46]
gi|52217421|dbj|BAD50014.1| putative thiamine biosynthesis protein [Bacteroides fragilis YCH46]
Length = 281
Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 162/269 (60%)
Query: 43 MPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQA 102
MPS D LP +VA + GIYDSL +K++ + + S +RDAAF SG ++G + DY GA + QA
Sbjct: 1 MPSFDGLPSLVAVRQGIYDSLDIKIDFITYASATDRDAAFLSGKLDGMLTDYPGATLLQA 60
Query: 103 GGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDES 162
G L+LVM DG L+ SK + + LKGKN+ +S NT +EY TD ++ A L
Sbjct: 61 KGSRLRLVMETDGSLSLIASKKSNVRNPDGLKGKNISVSGNTFVEYATDEVMKRACLHPG 120
Query: 163 EITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAG 222
E+ K E+N I LRL ML GQI A+ LP P IA+ +G +L++T+ +G+ TG +F+
Sbjct: 121 EVNKPEINNISLRLMMLEDGQISASFLPGPATAIALNNGHTALLNTRQMGLRCTGIVFSE 180
Query: 223 SVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQK 282
I EK E I + GY+L V Y+ + + IL+++ G+ E + LPDY +
Sbjct: 181 KAITEKDEEIRRFITGYNLGVKYLQTRPQNEWTEILVKEFGLQEKAAMQIDLPDYRPATR 240
Query: 283 PTIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
P+ D+++ I WL +K +P Y G++L+
Sbjct: 241 PSYHDIEKIIAWLKSKGAIPDYYPGENLV 269
>gi|134300615|ref|YP_001114111.1| NLPA lipoprotein [Desulfotomaculum reducens MI-1]
gi|134053315|gb|ABO51286.1| NLPA lipoprotein [Desulfotomaculum reducens MI-1]
Length = 319
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 169/310 (54%), Gaps = 8/310 (2%)
Query: 9 LLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLE 68
L +L V L+ CG ++ A ++ E L +G +P D +P VVA++ G + L++E
Sbjct: 10 LSLLLVFVTLLAGCG-QEEKAPQKGEQQQLKIGVLPIEDIMPMVVAEENGYFAQENLQVE 68
Query: 69 IVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQL------VMRLDGYFRLVMS 122
+++F S E+ A SG + G V D A + + G+D+++ +G F +V +
Sbjct: 69 LIRFQSAMEQGNAMQSGQMNGMVTDMIVATLMKDSGLDIKMTSITLGATPQEGRFAIVAA 128
Query: 123 KDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSG 182
+ +L LKGK+LGIS N++IEY TD ++ AG+D SE+ KT V KIPLR+EML +
Sbjct: 129 PGSSINTLADLKGKSLGISHNSIIEYVTDGLLKDAGMDPSEVKKTSVPKIPLRMEMLFTK 188
Query: 183 QIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYDLA 242
QIDA +PDP +T A G + + +F + EK++A+ R Y A
Sbjct: 189 QIDAITVPDPMVTFAEFKGAKVIAQDTTRNLSQAVVLFDQKTLDEKKDAVAGFYRAYAKA 248
Query: 243 VDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKLVP 302
V+ + +H + + +++++ +PEP+ D L Y Q P ED+ + W++ K+L+
Sbjct: 249 VEDLNNHPEQ-YKQLMVKNTNIPEPIAKDYNLQRYPKPQVPAEEDVNNVLQWMNQKELLK 307
Query: 303 SDYTGKDLIR 312
+D DL++
Sbjct: 308 NDLKYADLVK 317
>gi|83588970|ref|YP_428979.1| NLPA lipoprotein [Moorella thermoacetica ATCC 39073]
gi|83571884|gb|ABC18436.1| NLPA lipoprotein [Moorella thermoacetica ATCC 39073]
Length = 328
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 19 LSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNER 78
+S CG+ SS Q+E +L LG +P D PF VA+K G++ GLK+E+V F S +R
Sbjct: 19 VSGCGSPASSGSSQEE--SLKLGLIPVEDNFPFFVAEKEGLFTKAGLKVELVPFNSARDR 76
Query: 79 DAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLV------MRLDGYFRLVMSKDYTGESLET 132
D A SG+++G V D A+ + GG +++V +G F L+ S
Sbjct: 77 DLALQSGSIDGEVADIVATALLRKGGTPVKIVSLTMGATPAEGRFALLARPGADISSPGQ 136
Query: 133 LKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDP 192
LKG+ +GIS NT+IEY D ++ G+D + K V +IP RL++L G++DAA+LPDP
Sbjct: 137 LKGRTVGISENTIIEYVADGLLREGGVDPGSVQKVAVPQIPERLQLLLGGKLDAALLPDP 196
Query: 193 FITIAMADGMMSLVSTQDLGIFVTGA--MFAGSVIREKQEAIDILLRGYDLAVDYILSHD 250
F ++A G ++ + ++ +F I+ K AI LL+ Y A I + +
Sbjct: 197 FASLAARKGARVILDDTKINRNLSQVVLIFREEAIKHKTPAIKKLLQVYAGAASLI-ARN 255
Query: 251 RKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDL 310
A R + IE +P L D + P Y+ Q P E++ +DW+ AKKL+ + Y ++L
Sbjct: 256 PSAYRELFIEKARIPAELRDTYLAPQYSPPQLPRQEEVAAVMDWMVAKKLLAAPYKYEEL 315
Query: 311 I 311
+
Sbjct: 316 V 316
>gi|89210969|ref|ZP_01189350.1| NLPA lipoprotein [Halothermothrix orenii H 168]
gi|89159427|gb|EAR79094.1| NLPA lipoprotein [Halothermothrix orenii H 168]
Length = 315
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 150/276 (54%), Gaps = 4/276 (1%)
Query: 38 LSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGA 97
+ G +P LPF+VA++ G + + G +E+V F + ERD+A +G ++GT+ D A
Sbjct: 31 IRFGILPDDTALPFLVAREEGFFGAAGYDIELVNFTNALERDSALQAGVIDGTISDVLAA 90
Query: 98 AMQQAGGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTA 157
+ G +++ ++ F L+ S ++ L+GK + +SRNT+IEY TDR++
Sbjct: 91 VFAVSNGHKIKITSHINNRFLLLSSGKMEASGVKDLRGKPVAMSRNTIIEYITDRLLTEH 150
Query: 158 GLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDL--GIFV 215
G+D EI + + KIP+RL+ML +GQ+ AA LP+P T+A G L ++ +L G+ V
Sbjct: 151 GVDSEEINRVAIPKIPVRLQMLNAGQVAAATLPEPLATLAHKKGAKVLATSDELAGGVPV 210
Query: 216 TGAMFAGSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILP 275
+F I EK + I R Y AV+ I S+ +A R++L+E G P + D P
Sbjct: 211 V-ILFNEGAINEKTDEIKAFYRAYRQAVERINSNP-EAYRSLLVEKGGFPARVRDVFKFP 268
Query: 276 DYTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
Y PT E + ++W+ K L+ +DL+
Sbjct: 269 HYHKPALPTREMVDGVMEWMEEKGLLKDKVKYQDLV 304
>gi|89894273|ref|YP_517760.1| hypothetical protein DSY1527 [Desulfitobacterium hafniense Y51]
gi|109649300|ref|ZP_01373188.1| NLPA lipoprotein [Desulfitobacterium hafniense DCB-2]
gi|89333721|dbj|BAE83316.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109639476|gb|EAT49034.1| NLPA lipoprotein [Desulfitobacterium hafniense DCB-2]
Length = 324
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 167/298 (56%), Gaps = 15/298 (5%)
Query: 20 SSCGNKKSS--ADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNE 77
+ CG K ++ D Q TL++G+M + LP +VAQ+ G + L+++++ F SP E
Sbjct: 21 TGCGQKNTANPGDSQAGD-TLTIGSMTIEENLPVLVAQQNGYFAEQNLEVKLLTFQSPVE 79
Query: 78 RDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLV------MRLDGYFRLVMSKDYTGESLE 131
+AF +G ++G + D AA+ ++ G DL++ +G F ++ S T +S+
Sbjct: 80 LQSAFQTGQLDGMITDIMIAALLKSSGEDLRVASIALGATPEEGRFAIIASPASTVKSVA 139
Query: 132 TLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPD 191
LKGK++GIS N++IEY TD+++ G++ E+ KT V K+PLR+EML S QIDA V+PD
Sbjct: 140 DLKGKSIGISNNSIIEYVTDKLLLAGGVNPGEVNKTTVAKLPLRVEMLLSNQIDAIVVPD 199
Query: 192 PFITIAMADGMMSLVS-TQDLGIFVTGAMFAGSVIREKQEAIDILLRGYDLAVDYI-LSH 249
P I+ ++ G + +Q + + + + EKQ+A+ + Y V I S
Sbjct: 200 PQISYVVSQGAKIIAEDSQGENLSQSVTIVGKKTLNEKQDALQRFYQAYTKGVQAINASP 259
Query: 250 DRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKLV--PSDY 305
D+ + +L+++V +PE + + Y+ Q P +D+ + ++WL K L+ P DY
Sbjct: 260 DQ--YKELLVKNVNIPESIAASYQVQHYSEPQLPEEKDVNKVLEWLQEKGLLKNPVDY 315
>gi|51893656|ref|YP_076347.1| putative thiamine biosynthesis protein [Symbiobacterium
thermophilum IAM 14863]
gi|51857345|dbj|BAD41503.1| putative thiamine biosynthesis protein [Symbiobacterium
thermophilum IAM 14863]
Length = 317
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 153/297 (51%), Gaps = 19/297 (6%)
Query: 19 LSSCGNKKSSADKQKEPYT---------LSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEI 69
++ CG K +A QKEP T L +G +P++D LPF VA Y G+++E+
Sbjct: 1 MAGCGGKPQNA-YQKEPATPAAPETVGQLKIGQIPTIDGLPFWVAASKDYYRQQGVEVEL 59
Query: 70 VKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLV-MRL-----DGYFRLVMSK 123
V+F S ERDAA SG ++GT+ D GA G LQ+ + L +G F +V +
Sbjct: 60 VRFNSAAERDAALASGQIDGTLTDIMGAVSLHDNGTPLQITSINLGATIEEGPFAIVSAP 119
Query: 124 DYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQ 183
E LKG ++ I+ NT+I Y T++++ G+ E+ + +IPLR E L SG
Sbjct: 120 GSGITKPEQLKGADIAIATNTIIHYVTEKLLLENGIALDEVELVSIPQIPLRFENLMSGN 179
Query: 184 IDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGA--MFAGSVIREKQEAIDILLRGYDL 241
+ AA LP+P +++A+ G +++ + + + +F ++EK EAI Y++
Sbjct: 180 VKAATLPEPLLSLAVHKGGTVVLNDAEAKRNYSQSVIVFREDAVKEKAEAIKRFFVAYNM 239
Query: 242 AVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAK 298
AV I D +A + +L + +P + D + ++ Q P +++ ++WL K
Sbjct: 240 AVIDI-DRDPEAYKELLATEANLPPEIKDSWKVITFSPAQAPGRTEVEDVVEWLLEK 295
>gi|11497708|ref|NP_068929.1| thiamine biosynthesis protein, putative [Archaeoglobus fulgidus DSM
4304]
gi|2650560|gb|AAB91141.1| thiamine biosynthesis protein, putative [Archaeoglobus fulgidus DSM
4304]
Length = 300
Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 149/294 (50%), Gaps = 19/294 (6%)
Query: 27 SSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGN 86
S A ++K L +G +P D LP VVA + G + GL +E+++F S ERDAA +G
Sbjct: 18 SQAPQEK----LKVGILPIEDSLPIVVADEQGFFKKHGLDVEVIQFSSAVERDAALTAGE 73
Query: 87 VEGTVIDYTGAAMQQAGGIDLQLVMRL------DGYFRLVMSKDYTGESLETLKGKNLGI 140
V+ + D + + G D+++ +G F ++ + + +S+E L GK + +
Sbjct: 74 VDAVITDPLAVILLRDKGYDVRIASLCLGKTPKEGVFAILAAPNSDIDSVEDLDGKEIAV 133
Query: 141 SRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMAD 200
S NT+IEY D +++ GL+ TK + KIP+R++ L +G ++ AVLP+P + A++
Sbjct: 134 SLNTIIEYALDVMLSEYGLN---YTKISIPKIPIRMQALLNGNVETAVLPEPLASYAVSK 190
Query: 201 GMMSLVSTQDLGIFVTGA--MFAGSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNIL 258
G ++S L +T +F G V EK + L Y AV I + +++ R
Sbjct: 191 GAKLILSDAMLNESITQTVIVFRGDVDDEK---VQKFLEAYREAVREI-NANKEKYREKF 246
Query: 259 IEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDLIR 312
IE VPE + +PDY Q+ E + ++W + L+ ++ IR
Sbjct: 247 IEIARVPENIAGSYPIPDYPEPQQLPKEYYDRYLEWAMQRGLIEKPVPYEEAIR 300
>gi|163789950|ref|ZP_02184386.1| hypothetical protein CAT7_06943 [Carnobacterium sp. AT7]
gi|159874890|gb|EDP68958.1| hypothetical protein CAT7_06943 [Carnobacterium sp. AT7]
Length = 318
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 146/311 (46%), Gaps = 16/311 (5%)
Query: 10 LVLAVLSITLSSCGNKKSSADKQK--------EPYTLSLGAMPSMDYLPFVVAQKTGIYD 61
++L +I L +C N S+ + EP L G +P+ +P ++A++ G +D
Sbjct: 6 ILLMAATIGLVACSNNNESSQSAQTSESKLTNEP--LRFGTLPAESAIPIILAKENGYFD 63
Query: 62 SLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLVM 121
+ +EI F +PN+R+AA SG ++G + D A + GGIDL + ++ F+L+
Sbjct: 64 DENVSVEITPFNAPNDRNAAAQSGELDGMIGDVMTALSFKEGGIDLTITSDINEEFKLLS 123
Query: 122 SKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRS 181
S D ++ L GK++ + ++EY D I + ++ + IP R E L
Sbjct: 124 SPDSGITDIKQLDGKDVSLVPKLLLEYIMDEIAVKNNITYEVVS---IPSIPARYEALLE 180
Query: 182 GQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYDL 241
QID+ + +P T +G L S+ + GI +F+ + E+ I R Y+
Sbjct: 181 NQIDSVIFTEPQATALKMNGAHVLASSTEYGIKGGTILFSDDTVAERSTDIAAFYRAYNK 240
Query: 242 AVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPD--YTHGQKPTIEDLQQTIDWLHAKK 299
AVDY+ + D +IL +D PE + D + + Y T E W K+
Sbjct: 241 AVDYMNTADPAEYSSIL-KDYNFPETMGDYLTNKEEGYNKAAIVTKEQYDSIEKWTKDKE 299
Query: 300 LVPSDYTGKDL 310
++ +YT K+L
Sbjct: 300 MISKEYTYKEL 310
>gi|119873096|ref|YP_931103.1| NLPA lipoprotein [Pyrobaculum islandicum DSM 4184]
gi|119674504|gb|ABL88760.1| NLPA lipoprotein [Pyrobaculum islandicum DSM 4184]
Length = 297
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 144/302 (47%), Gaps = 23/302 (7%)
Query: 5 SFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLG 64
+ +LLV+ +++ L + K + +G +P +D LPFVVA+K ++ + G
Sbjct: 3 KWISLLVVIIIAAILFLFFFQPFVPPPPK----IKVGLLPIVDALPFVVAEKENLFKAEG 58
Query: 65 LKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLVMSKD 124
L +E++ F S +RD+A +G V+ V D GA M G+ +++V G+ + D
Sbjct: 59 LDVELIYFGSARDRDSAIVAGQVDVAVHDPVGALMLIGNGVPIKIV----GFVCCLNETD 114
Query: 125 -----YTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEML 179
Y + K + IS+NT+IEY +I+ + ++ +V I R ++L
Sbjct: 115 SNVGFYYVRAPGVRNIKTVAISKNTIIEYVASKIV------KGDVEFVDVPSIANRYQLL 168
Query: 180 RSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGY 239
G++DAAVLPDP+ T+A+ + +DL + V + E + A++ L+
Sbjct: 169 IEGKVDAAVLPDPWGTLAIMKNATLIARHRDLVVLVASERLLNT--PEGRRAVEKLVTAL 226
Query: 240 DLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKK 299
+ AVD ++ K R+IL E + +P I+ H K E +WL K
Sbjct: 227 NKAVDLYNANPEK-YRDILAEKLRLPAEFKQHTIVWK-AHIVKMPREIFDDATNWLVKKG 284
Query: 300 LV 301
LV
Sbjct: 285 LV 286
>gi|94986503|ref|YP_594436.1| thiamine biosynthesis protein, putative [Lawsonia intracellularis
PHE/MN1-00]
gi|94730752|emb|CAJ54114.1| thiamine biosynthesis protein, putative [Lawsonia intracellularis
PHE/MN1-00]
Length = 303
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 140/284 (49%), Gaps = 15/284 (5%)
Query: 38 LSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGA 97
+++G +P+ + VA G++ GL++ +V F S E +A +G ++G D
Sbjct: 23 INIGTLPAASSIILHVAIDEGLFADQGLEVNLVPFRSTVELSSAMRAGMLDGHFTDIVTV 82
Query: 98 AMQQAGGIDLQLVMRL------DGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTD 151
+Q G+ Q+V + F + +S+ + +S LK + IS+ T+IE+
Sbjct: 83 LLQNETGVPQQIVATVARSTTQHRNFGIAVSQKSSIQSPNDLKNTPIAISKATIIEFLAS 142
Query: 152 RIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDL 211
R++ A L + T++N+I LR ++L S +I+AA+L +P +++A ++G S V D
Sbjct: 143 RLLQKAHLPPTSCPLTDINRIALRTQLLMSNKIEAALLVEPLLSLAESNG--SKVILDDK 200
Query: 212 GIFVTGAMFAGSVIREKQEAIDIL--LRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLV 269
G+ +FA +R++ + +I R L ++ + R +++ +P+ +V
Sbjct: 201 GL---NLVFAVIALRKEVLSDNIAQSFRNALLEAAKRINANPDTYRTLMVNKDLLPQDVV 257
Query: 270 DDVILP--DYTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
+P D P D++ +W+ + KL+ + + ++++
Sbjct: 258 MTFAMPFFDIEKEPLPNSADIETFANWMISSKLLQTSPSYEEIV 301
>gi|91776911|ref|YP_546667.1| NLPA lipoprotein [Methylobacillus flagellatus KT]
gi|91710898|gb|ABE50826.1| NLPA lipoprotein [Methylobacillus flagellatus KT]
Length = 339
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 18/256 (7%)
Query: 6 FFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGL 65
F LV A+ +T G+ +A+K K L+ A + Y PF VA + ++D G+
Sbjct: 12 LFAALVTALFLVT----GSTAYAAEKSKPVVKLATSAW--IGYAPFYVAVEKNLFDKYGV 65
Query: 66 KLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLD---GYFRLVMS 122
K+E+ F P +A SG++ G + Y M A G D ++VM +D G LV S
Sbjct: 66 KVELQDFADPALMPSALQSGSIHGAMYTYDQVIMLVANGHDFRVVMPIDYSNGADALVAS 125
Query: 123 KDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSG 182
K +S+ LKG+ + +T + + +AGL E++I V+ P + +
Sbjct: 126 KKI--KSIAELKGRRVAYPFSTCDNLLVNYALKSAGLTEADIKG--VDTTPENVPAALAS 181
Query: 183 QIDAAVLPDPFITIAM----ADGMMSLVSTQDLGIFVTGAM-FAGSVIREKQEAIDILLR 237
+DA +P +T A+ G +L ++ +T + F I++ ++ + ++R
Sbjct: 182 GVDAGATYEPNVTKALKLKTGAGFHTLYTSASAPGLITDVLYFPAKFIKQNKDQVTAIIR 241
Query: 238 GYDLAVDYILSHDRKA 253
GY +DY+ H ++A
Sbjct: 242 GYLDGLDYMNKHPQEA 257
>gi|83590805|ref|YP_430814.1| NLPA lipoprotein [Moorella thermoacetica ATCC 39073]
gi|83573719|gb|ABC20271.1| NLPA lipoprotein [Moorella thermoacetica ATCC 39073]
Length = 335
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 14/253 (5%)
Query: 9 LLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLE 68
+LVL + + L+ CG++K++ +K + +G +P LP VVA D +LE
Sbjct: 11 ILVLTLTAGLLAGCGSQKTATSGEKP--VIKIGYLPITHSLPLVVADARHKSDFNNFRLE 68
Query: 69 IVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLVMSKDYTGE 128
+VKF S + A +SG ++G + A +A GI +++V+ L V+ +
Sbjct: 69 LVKFGSWPDLTEALNSGQIQGAITMLELALASKAKGIPVEVVL-LSHKNGDVLVAAPPIK 127
Query: 129 SLETLKGKNLGI----SRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQI 184
++ LKGK + I S + ++ Y + + AGL S++ + E+ P L G++
Sbjct: 128 DVKDLKGKRVAIPHRLSGHNILLY---KALQQAGLAYSDVQEVEMAP-PEMAAALARGEV 183
Query: 185 DAAVLPDPFITIAMADGM-MSLVSTQDL--GIFVTGAMFAGSVIREKQEAIDILLRGYDL 241
A V+ +PF A+ G L QD+ G G + ++RE A+ L+
Sbjct: 184 AAYVVAEPFGAQAVVAGTGRVLKRAQDIIPGWECCGLVINQQLVRENPAAVQELVGSLVD 243
Query: 242 AVDYILSHDRKAI 254
YI+S R AI
Sbjct: 244 TGHYIMSDRRTAI 256
>gi|121535615|ref|ZP_01667421.1| NLPA lipoprotein [Thermosinus carboxydivorans Nor1]
gi|121305785|gb|EAX46721.1| NLPA lipoprotein [Thermosinus carboxydivorans Nor1]
Length = 358
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 149/347 (42%), Gaps = 41/347 (11%)
Query: 1 MKNFSFFTLLVLAVLSITLSSCG-NKKSSADKQKEP-YTLSLGAMPS-----------MD 47
MK L+ L V ++ +++CG N + QK P + SL +P +
Sbjct: 1 MKKRLLVALVALIVAALLITACGQNPAAQVTPQKGPAWAPSLAPLPQEIVVKVGMKQVIS 60
Query: 48 YLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVE-GTVIDYTGAAMQQAGGID 106
++ G Y LG+K+E V+F S E +G ++ G + +G + I
Sbjct: 61 DAGILIGMAKGYYQDLGIKIEPVQFNSGQEMINQLAAGQLDVGATVTASGLFNAMSRDIP 120
Query: 107 LQLV------MRLDGYFRLVMSKDY--TGESLETLKGKNLGISRNTVI-EYTTDRIINTA 157
+++V + GY+RLV+ KD T + + L+G+ + I + E R++
Sbjct: 121 VKIVADKGINVPGKGYYRLVIRKDLVDTIKDYKDLRGRKIAIVGTASLDEIALVRVLQKG 180
Query: 158 GLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIF--- 214
GL +I + P L L + IDAA++ +PF+T M G++ +D +
Sbjct: 181 GLTTKDIDLQVIRAFPDMLVSLGNKSIDAAMVIEPFVTQGMVKGILD--PWKDPSDYDPD 238
Query: 215 -VTGAMFAGSVIREKQEAIDILLRGYDLAV----DYILSHDRKA-IRNILIEDVGVPEPL 268
T + G+ + ++ E + + Y A+ D + KA I +IL + V +P
Sbjct: 239 AQTALLVFGTSMTKRPEVANRFMTAYVKALRDYNDAFCKNKNKAEIVDILCKYSVVKDPA 298
Query: 269 VDDVILPDYTHGQKP----TIEDLQQTIDWLHAKKLVPSDYTGKDLI 311
+ D + P G P ++ + ++W A L+ SD +D +
Sbjct: 299 LYDKMFP---TGLNPDGYVRMKGIAMDLEWYKANNLLKSDIKLEDAV 342
>gi|162450212|ref|YP_001612579.1| putative periplasmic substrate-binding protein [Sorangium
cellulosum 'So ce 56']
gi|161160794|emb|CAN92099.1| putative periplasmic substrate-binding protein [Sorangium
cellulosum 'So ce 56']
Length = 338
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 120/255 (47%), Gaps = 20/255 (7%)
Query: 9 LLVLAVLSITLSSCGNKKSSADKQKE---PYTLSLGAMPSMDYLPFVVAQKTGIYDSLGL 65
++ LS+ S+C D+ KE P +S G + + P +A++ G +D G+
Sbjct: 12 WFAVSALSVLASACQPDPPLGDRGKEARPPLRVSHGYW--VGFFPQSIAEEKGFFDQQGV 69
Query: 66 KLEIVKFYSPNERD--AAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLD--GYFRLVM 121
+E+V ++P+ + F +G V+G A D ++V+ L ++M
Sbjct: 70 NVELV--FNPDLYGMISDFTAGKVDGLPWTMEVVVRILAKEPDARVVLYLGQTAGADVIM 127
Query: 122 SKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGL---DESEITKTEVNKIPLRLEM 178
++ +++ LKGK + + E ++ +GL D + + +E + IP
Sbjct: 128 ARPEI-QTISDLKGKKIAAKTGALGEMLVSEMLERSGLAIDDVTLVNASETDVIPF---- 182
Query: 179 LRSGQIDAAVLPDPFITIAMADGMMSLVSTQDL-GIFVTGAMFAGSVIREKQEAIDILLR 237
L + I AA +P+ T A G ++ S+++ G+F MF G+V+R++ + + +R
Sbjct: 183 LSNNTIQAAHTWEPYATQAGKAGAKAIFSSKETPGLFADFTMFRGAVLRDRPDDVRAFIR 242
Query: 238 GYDLAVDYILSHDRK 252
+ AV++ +H ++
Sbjct: 243 AWFQAVEFWKAHPQE 257
>gi|27464138|gb|AAO15990.1|AF514870_6 Abc1 [Lactobacillus plantarum]
Length = 350
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 42/274 (15%)
Query: 7 FTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMD----YLPFVVAQKTGIYDS 62
F LL L L+ CG+ +S+ + Y +P+ D P +A + G +
Sbjct: 8 FGLLSFIALGTVLAGCGSSSASSKDTSKTYKYGEVTIPAKDGSICNAPNYIAYEKGFFKK 67
Query: 63 LGLKLEIVKFYSPNERD-----AAFHSGNVEGTVIDY-------TGAAMQQAGGIDLQLV 110
G+K ++V N RD A F SG + D+ GA ++ GGI
Sbjct: 68 NGIKAKLV----ANPRDISDLEAGFASGKYDAQNGDFQYLPAIQNGAQIKAVGGIH---- 119
Query: 111 MRLDGYFRLVMSKDYTGESLETLKGKNLGI-SRNTVIEYTTDRIINTAGLDESEITKTEV 169
G +L++ K+ + +S++ LKGK +GI ++ + +Y T + AG+D V
Sbjct: 120 ---QGCIKLLVPKNSSIKSVKDLKGKTIGIPAQGSTPQYVTSIALQHAGIDPKTGVTWRV 176
Query: 170 NKIPLRLEMLRSGQIDAAVLPDPFITIAMAD-GMMSLVSTQD---------LGIFVTGAM 219
L + GQ+DA DP+ A + G +++ + +G+ GA
Sbjct: 177 YSTDLLAKAAEKGQVDAIGTVDPYAYQAQKESGFKTIIDNNNNSGNAKMAAMGMKSKGAC 236
Query: 220 F----AGSVIREKQEAIDILLRGYDLAVDYILSH 249
+ +++E ++R Y A +I +H
Sbjct: 237 CYLYVSSKLVKENPAKAKAIVRSYKQAAAWINNH 270
>gi|121535485|ref|ZP_01667294.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Thermosinus carboxydivorans
Nor1]
gi|121305904|gb|EAX46837.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Thermosinus carboxydivorans
Nor1]
Length = 336
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 14/245 (5%)
Query: 22 CGNKKSSADKQ---KEPYTLSLGAMPSM-DYLPFVVAQKTGIYDSLGLKLEIVKFYSPNE 77
CG+ A +Q KEP + A+P+ Y P +VA++ G + + GL +EI E
Sbjct: 22 CGSGNKPAAQQPAAKEPIKI---ALPTFTGYGPLLVAKEKGFFKNKGLDVEIQVIDGLGE 78
Query: 78 RDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLD---GYFRLVMSKDYTGESLETLK 134
R A + ++G + G+ ++++ D G +++ + S+ LK
Sbjct: 79 RKQALMANKIQGMATALDVSVTMAGDGVPVKILWAFDTSNGADGILVKNNKGINSVADLK 138
Query: 135 GKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFI 194
GK + + + +++ AG+ + ++ + + +G++DAAV +P++
Sbjct: 139 GKEIALPEAATSHFFLLNVLDKAGMSDKDVKIVNMTAGEAGAAFV-AGKVDAAVTWEPWL 197
Query: 195 TI-AMADGMMSLVSTQDL-GIFVTGAMFAGSVIREKQEAIDILLRGYDLAVDYILSHDRK 252
T A ADG + LVST+DL G+ V ++ + + + A D+++++ +
Sbjct: 198 TKGAKADGKV-LVSTKDLPGVIVDVVFLREDFVKAHPDQVQAFVAALKEATDFMMTNKDE 256
Query: 253 AIRNI 257
A + I
Sbjct: 257 AYKII 261
>gi|158423985|ref|YP_001525277.1| ABC transporter periplasmic binding protein [Azorhizobium
caulinodans ORS 571]
gi|158330874|dbj|BAF88359.1| ABC transporter periplasmic binding protein [Azorhizobium
caulinodans ORS 571]
Length = 352
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 5/181 (2%)
Query: 32 QKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTV 91
+K TL +G P + YLP +A++ G + GL + I F + A G+++
Sbjct: 39 EKPSLTLGVGGKPLLYYLPLTIAEQKGFFKEEGLDVTINDFGGGAKSLQALIGGSIDAVT 98
Query: 92 IDYTGAAMQQAGGIDLQLVMRLDGY--FRLVMSKDYTGE--SLETLKGKNLGISR-NTVI 146
Y QA G D+ V+ L Y LV+ KD + ++ LKG +G++ +
Sbjct: 99 GAYEHTIRMQAKGQDIVSVIELGRYPGIVLVVQKDKAAKLKTIADLKGAKIGVTAPGSST 158
Query: 147 EYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLV 206
+ D ++ GL S+++ V + ++ G+IDA DP IT +DG ++++
Sbjct: 159 NFFVDFLLAKNGLKPSDVSYIGVGGGASAVAQMKRGEIDAMANLDPVITKLESDGDVTVL 218
Query: 207 S 207
+
Sbjct: 219 A 219
>gi|30021028|ref|NP_832659.1| Alkanesulfonates-binding protein [Bacillus cereus ATCC 14579]
gi|29896581|gb|AAP09860.1| Alkanesulfonates-binding protein [Bacillus cereus ATCC 14579]
Length = 328
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 35/256 (13%)
Query: 7 FTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYD----S 62
F +L A L+I++ G +KS+A +KE T+ +G + P ++A+K G ++
Sbjct: 5 FKILSFA-LAISVCLLGCEKSTASSKKEDVTIQIGIQQGLS--PLLLAKKKGWFEEEFKK 61
Query: 63 LGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR---- 118
G+K++ +F S A S ++ + + QA GI + Y R
Sbjct: 62 EGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGFTEIANT-SYARKGTG 120
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE- 177
+++ KD S++ LKGK + +++ + R ++ G+D EVN I L+ +
Sbjct: 121 ILVQKDSKIASVKELKGKKIAVAKGSSAFNLLYRALDKEGIDAK-----EVNVIQLQPDE 175
Query: 178 ---MLRSGQIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIR 226
SG +DA + DPFI++ +ADG VS+ + +T FA +
Sbjct: 176 AQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEF--LITRTKFA----K 229
Query: 227 EKQEAIDILLRGYDLA 242
E E ++ L+ Y+ A
Sbjct: 230 EHPELVEKFLKVYEKA 245
>gi|168133826|ref|ZP_02577055.1| Alkanesulfonates-binding protein [Bacillus cereus B4264]
Length = 328
Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 35/256 (13%)
Query: 7 FTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYD----S 62
F +L A L+I++ G +KS+A +KE T+ +G + P ++A+K G ++
Sbjct: 5 FKILSFA-LAISVCLLGCEKSTASSKKEDVTIQIGIQQGLS--PLLLAKKKGWFEEEFKK 61
Query: 63 LGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR---- 118
G+K++ +F S A S ++ + + QA GI + Y R
Sbjct: 62 EGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGFTEIANT-SYARKGTG 120
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE- 177
+++ KD S++ LKGK + +++ + R ++ G+D EVN I L+ +
Sbjct: 121 ILVQKDSKIASVKELKGKKIAVAKGSSAFNLLYRALDKEGIDAK-----EVNVIQLQPDE 175
Query: 178 ---MLRSGQIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIR 226
SG +DA + DPFI++ +ADG VS+ + +T FA +
Sbjct: 176 AQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEF--LITRTKFA----K 229
Query: 227 EKQEAIDILLRGYDLA 242
E E ++ L Y+ A
Sbjct: 230 EHPELVEKFLEVYEKA 245
>gi|186684396|ref|YP_001867592.1| ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic
component-like protein [Nostoc punctiforme PCC 73102]
gi|186466848|gb|ACC82649.1| ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic
component-like protein [Nostoc punctiforme PCC 73102]
Length = 331
Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 12/205 (5%)
Query: 50 PFVVAQKTGIYDSLGLKLEIVKFYSPNE-----RDAAFHSGNVEGTVIDYTGAAMQQAGG 104
P ++AQK G + + G+ +E + N+ + A F++G +G + + A
Sbjct: 46 PGIIAQKKGFFKAQGVNVEQIDIKLINKGYIKLKQANFNAGKYDGISLSLGSFIILSATN 105
Query: 105 IDLQLVMRLDGYFRL-VMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGL--DE 161
D+Q V+ +D V+ +++ LKGK LG + + E ++ TA L D+
Sbjct: 106 PDIQSVLIIDESTGADVVVAQSQIKTVAGLKGKKLGTNLGSFSEVFVTEMLKTANLTSDD 165
Query: 162 SEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMA-DGMMSLVSTQDLGIFVTGAMF 220
+ K E ++IP + L++ I A P + AM G + S Q G+ + +F
Sbjct: 166 VNLVKLEASEIP---QYLKNNVIQAGHTWQPHLYEAMKLGGNILFTSKQTPGLVLDMIVF 222
Query: 221 AGSVIREKQEAIDILLRGYDLAVDY 245
G IR++ E I +RG+ A +Y
Sbjct: 223 RGDTIRDRPEDIRAFVRGWLQAANY 247
>gi|39935112|ref|NP_947388.1| putative ABC transporter, periplasmic substrate-binding protein
[Rhodopseudomonas palustris CGA009]
gi|39648963|emb|CAE27484.1| putative ABC transporter, periplasmic substrate-binding protein
[Rhodopseudomonas palustris CGA009]
Length = 340
Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 37 TLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSG--NVEGTVIDY 94
T+++G + YLP V+A++ G YD GL +E+V ++ A G +V D+
Sbjct: 29 TIAIGGGACLCYLPTVLAKQLGEYDKAGLAVELVDLKGGSDALKAVLGGSADVVSGYFDH 88
Query: 95 TG--AAMQQAGGIDLQLVMRLDGYFRLVM--SKDYTGE--SLETLKGKNLGISR-NTVIE 147
T AA +Q ++Q + D Y LV+ S +T E S++ L GK +G+S + +
Sbjct: 89 TVNLAAKKQ----EMQSFVVYDRYPGLVLAVSPGHTAEIKSIKELAGKKVGVSAPGSSTD 144
Query: 148 YTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMA 199
+ ++ G+D + + V + ++ GQIDAAV+ DP +TI A
Sbjct: 145 FFLKYLLKKNGVDPNNVAVVGVGLGATAVAAMQQGQIDAAVMLDPAVTILQA 196
>gi|91976585|ref|YP_569244.1| extracellular solute-binding protein, family 3 [Rhodopseudomonas
palustris BisB5]
gi|91683041|gb|ABE39343.1| extracellular solute-binding protein, family 3 [Rhodopseudomonas
palustris BisB5]
Length = 341
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 37 TLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSG--NVEGTVIDY 94
T+++G + YLP V+A++ G YD GL +E+V ++ A G +V D+
Sbjct: 29 TIAIGGGACLCYLPTVLAKQLGEYDKAGLSVELVDLKGGSDALKAVLGGSADVVSGYFDH 88
Query: 95 TG--AAMQQAGGIDLQLVMRLDGYFRLVM--SKDYTGE--SLETLKGKNLGISR-NTVIE 147
T AA +Q ++Q + D Y LV+ S +T E S++ L GK +G+S + +
Sbjct: 89 TVNLAAKKQ----EMQSFVVYDRYPGLVLAVSPGHTAEIKSIKDLAGKKVGVSAPGSSTD 144
Query: 148 YTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITI 196
+ ++ G+D + ++ V + ++ GQIDAAV+ DP +TI
Sbjct: 145 FFLKYLLKKNGVDPNNVSVIGVGLGATAVAAMQQGQIDAAVMLDPAVTI 193
>gi|146276638|ref|YP_001166797.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145554879|gb|ABP69492.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 309
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 34 EPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVID 93
+P T++L + D+ P +VA++ G +D GL++EIV P + SG V+ +
Sbjct: 18 QPLTIALDWFVNPDHGPIIVAERQGWFDEAGLEVEIVAPADPADPPKMAASGQVDLAITY 77
Query: 94 YTGAAMQQAGGIDLQLVMRL-DGYFRLVMSK-DYTGESLETLKGKNLGISRNTVIEYTTD 151
+Q A G+ L V L + VM+K D + L LKG+ +G S + E
Sbjct: 78 QPQLYLQHAEGLPLVRVGTLVESPLYCVMAKADGPVQGLADLKGRKVGFSVAGIEEALLH 137
Query: 152 RIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDA 186
++ T G++ +E+ VN L SGQ+DA
Sbjct: 138 TMLRTNGVEPAEVGFVNVNFA--LTPALASGQVDA 170
>gi|89097938|ref|ZP_01170825.1| ABC transporter (substrate-binding protein) [Bacillus sp. NRRL
B-14911]
gi|89087440|gb|EAR66554.1| ABC transporter (substrate-binding protein) [Bacillus sp. NRRL
B-14911]
Length = 331
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 37/285 (12%)
Query: 1 MKNFSFFTLLVLAVLSITLSSCGN-KKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGI 59
MK +F + L + LS CG+ + SS K+K + +G P+++++P +VA+ G
Sbjct: 1 MKKKAFIFMASLLTAAGILSGCGSSENSSGSKEK----IVIGYFPNINHVPAMVAKDQGF 56
Query: 60 YDSL---GLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLD-G 115
+ G +E F + A +G+++ ++ A + G D++L+ G
Sbjct: 57 FQKRLGDGTTIEYKTFADGGQFMTALKTGDLDAGLVGPGPAMNNYSTGADVKLIAGASTG 116
Query: 116 YFRLVMSKDYTGESLETLKGKN-----LGISRNTVIEYTTDRIINTAGLDESEITKTEVN 170
++ SKD ++ GK +G + + ++Y T L+ES IT +
Sbjct: 117 GTVVLASKDSGIKTAADFAGKTYITPAVGCTHD--VQYETY-------LEESGITSERIG 167
Query: 171 KIPLRL--------EMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIF-----VTG 217
L ML+SG+ID AV P+P+ + + ++V D F +
Sbjct: 168 GTMKHLTGNPAQYANMLKSGKIDVAVAPEPWAAVIEEETDANVVIGWDEVAFGETLPASV 227
Query: 218 AMFAGSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDV 262
+ +G I + E I ++ + AV YI + +A + I I+D+
Sbjct: 228 MVTSGKAIEDNPEVIQKIVEAHKDAVKYITENPEQA-KEITIKDI 271
>gi|170745429|ref|YP_001766886.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium radiotolerans
JCM 2831]
gi|170659030|gb|ACB28084.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium radiotolerans
JCM 2831]
Length = 343
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 15/245 (6%)
Query: 54 AQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVM-- 111
A ++G+++ GL + + +F + A +G V+ + A A G+ ++++
Sbjct: 50 AVQSGLFEKEGLAVTLAQFPAGPAMLPALAAGEVDLAWMGEFPAVTGYANGLPIEILFME 109
Query: 112 RLDGY-FRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVN 170
R+D RLV + SL LKGK +G++ + Y R + AGL ++ VN
Sbjct: 110 RIDATNVRLVANPAAGIASLPDLKGKRIGVAIGSTSHYHLLRALAQAGLKAEDVRL--VN 167
Query: 171 KIPLRLE-MLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFA-GSVIREK 228
P + +GQIDAA + +P + G + ST+ LG+ G A + +
Sbjct: 168 LAPANMPPAYAAGQIDAAFVWEPNVGAMERMGAKPIASTKSLGMITGGVWVARKAFVTGS 227
Query: 229 QEAIDILLRGYDLAV-DYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIED 287
A+ L+ +D A DY + D A+R + +G+ P D ++ GQ
Sbjct: 228 GPAVQRFLKAWDRAQKDY--ADDPAAVRAAEAKRIGMGGPDFDALVA-----GQSVAHPS 280
Query: 288 LQQTI 292
+QT+
Sbjct: 281 FRQTL 285
>gi|53687201|ref|ZP_00106830.2| COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems,
periplasmic components [Nostoc punctiforme PCC 73102]
Length = 295
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 12/205 (5%)
Query: 50 PFVVAQKTGIYDSLGLKLEIVKFYSPNE-----RDAAFHSGNVEGTVIDYTGAAMQQAGG 104
P ++AQK G + + G+ +E + N+ + A F++G +G + + A
Sbjct: 10 PGIIAQKKGFFKAQGVNVEQIDIKLINKGYIKLKQANFNAGKYDGISLSLGSFIILSATN 69
Query: 105 IDLQLVMRLDGYFRL-VMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGL--DE 161
D+Q V+ +D V+ +++ LKGK LG + + E ++ TA L D+
Sbjct: 70 PDIQSVLIIDESTGADVVVAQSQIKTVAGLKGKKLGTNLGSFSEVFVTEMLKTANLTSDD 129
Query: 162 SEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMA-DGMMSLVSTQDLGIFVTGAMF 220
+ K E ++IP + L++ I A P + AM G + S Q G+ + +F
Sbjct: 130 VNLVKLEASEIP---QYLKNNVIQAGHTWQPHLYEAMKLGGNILFTSKQTPGLVLDMIVF 186
Query: 221 AGSVIREKQEAIDILLRGYDLAVDY 245
G IR++ E I +RG+ A +Y
Sbjct: 187 RGDTIRDRPEDIRAFVRGWLQAANY 211
>gi|163807132|ref|ZP_02198855.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium populi BJ001]
gi|179346339|gb|ACB81751.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium populi BJ001]
Length = 324
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 19/253 (7%)
Query: 62 SLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR--- 118
+LG +++ +F S A ++G V+ T QA L V +
Sbjct: 65 ALGYRVQWSEFPSGPPLMEALNAGAVDFGSAGETPPIFAQAASDALAYVAHEPAAPKGEA 124
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEM 178
+++ K +S+ L+GK + +++ + + Y R I AGL S+IT + R
Sbjct: 125 ILVPKASPIQSVADLRGKKVALNKGSNVHYLLVRAIEAAGLSLSDITPVYLAPADARAAF 184
Query: 179 LRSGQIDAAVLPDPFITIAMADGMMSLVS-----TQDLGIFVTGAMFAGSVIREKQEAID 233
R G +DA V+ DP+ A A G +++ + +++ FA E A+D
Sbjct: 185 ER-GAVDAWVIWDPYFAAAEAGGNARVLADGTGLVPNHQFYLSSKTFAA----ENGAALD 239
Query: 234 ILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKP----TIEDLQ 289
++ VD + A+ L VG+P P++ V L T+G +P ++ Q
Sbjct: 240 AIVAAI-AEVDAWAEDNTDAVAKELAPSVGIPAPIL-SVALKRQTYGIRPLDEAVTKEQQ 297
Query: 290 QTIDWLHAKKLVP 302
+ D H KLVP
Sbjct: 298 RIADTFHGLKLVP 310
>gi|52142602|ref|YP_084228.1| alkanesulfonates-binding protein [Bacillus cereus E33L]
gi|51976071|gb|AAU17621.1| alkanesulfonates-binding protein [Bacillus cereus E33L]
Length = 328
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 35/256 (13%)
Query: 7 FTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSL--- 63
F +L A L+I+L G +KS+A +KE T+ +G + P ++AQK G ++
Sbjct: 5 FKVLSFA-LAISLFLFGCEKSTASSKKEDVTVQIGIQQGLS--PLLLAQKKGWFEEEFKK 61
Query: 64 -GLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR---- 118
G+K++ +F S A S ++ + + QA GI+ + Y R
Sbjct: 62 EGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEFTEIANT-SYARKGTG 120
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE- 177
+++ KD S++ LKGK + +++ + R ++ G+D +VN I L+ +
Sbjct: 121 ILVQKDSKITSVKELKGKKIAVAKGSSAFNLLYRALDKEGIDAK-----DVNVIQLQPDE 175
Query: 178 ---MLRSGQIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIR 226
SG +DA + DPFI++ + DG + VS+ + I T FA +
Sbjct: 176 AQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIART--KFA----K 229
Query: 227 EKQEAIDILLRGYDLA 242
E E ++ L+ Y+ A
Sbjct: 230 EHPELVEKFLKVYEKA 245
>gi|145589368|ref|YP_001155965.1| ABC transporter, substrate binding protein [Polynucleobacter sp.
QLW-P1DMWA-1]
gi|145047774|gb|ABP34401.1| ABC transporter, substrate binding protein [Polynucleobacter sp.
QLW-P1DMWA-1]
Length = 331
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 22/262 (8%)
Query: 2 KNFSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYD 61
K FS LVL + S + G+ SA Q++ L +G P LPF A G++
Sbjct: 4 KKFSRRDTLVLGIKSSLALAMGSIGLSAKAQEK--KLLIGYWPIAAGLPFYAAVDRGLFK 61
Query: 62 SLGLKLEIVKFYSPNERDAAFHSGNVEGTV--IDYTGAAM---QQAGGIDLQLVMRLDGY 116
G+ +E VKF SPN+ A +G ++G + T A+ Q G I + +
Sbjct: 62 QAGVNVEAVKFASPNQVVEAMIAGRIDGCANGVAITALALADAQSPGSIKFTCMNYANEK 121
Query: 117 F---RLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIP 173
+ ++++ + + + + L GK + ++ AG +++ + + +I
Sbjct: 122 YILDQVIVPINSSIKGISELAGKKVACGPGINNVTLAKAVLAGAGATNAQVIELPIAQI- 180
Query: 174 LRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTG---------AMFAGSV 224
L L +GQID A + +P I + + + +V G A
Sbjct: 181 --LPALVAGQIDGAYVLEPTAVIGKQQKISRSIGAGVVSKYVLGDNLPWIGGAAALTSKT 238
Query: 225 IREKQEAIDILLRGYDLAVDYI 246
++EK + I+ ++GY V+Y+
Sbjct: 239 LKEKADLINGFIKGYAGGVEYV 260
>gi|163852823|ref|YP_001640866.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium extorquens PA1]
gi|163664428|gb|ABY31795.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium extorquens PA1]
Length = 324
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 19/253 (7%)
Query: 62 SLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR--- 118
+LG +++ +F S A ++G V+ T QA L V +
Sbjct: 65 ALGYRVQWSEFPSGPPLMEALNAGAVDFGSAGETPPIFAQAASDVLAYVAHEPAAPKGEA 124
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEM 178
+++ K +S+ L+GK + +++ + + Y R I AGL ++IT + R
Sbjct: 125 ILVPKSSAAQSVADLRGKKVALNKGSNVHYLLVRAIEAAGLTLADITPVYLAPADARAAF 184
Query: 179 LRSGQIDAAVLPDPFITIAMADGMMSLVS-----TQDLGIFVTGAMFAGSVIREKQEAID 233
R G +DA V+ DP+ A A G +++ + +++ FA E A+D
Sbjct: 185 ER-GAVDAWVIWDPYFAAAEAGGNARVLADGTGLVPNHQFYLSSKSFAA----ENGPALD 239
Query: 234 ILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDL----Q 289
++ VD + A+ L VG+P P++ + L T+G +P E + Q
Sbjct: 240 AIVAAV-AEVDAWAKDNTDAVAKELSPSVGIPAPIL-SIALKRQTYGIRPLDEGVTKEQQ 297
Query: 290 QTIDWLHAKKLVP 302
+ D H KLVP
Sbjct: 298 RIADTFHGLKLVP 310
>gi|75762928|ref|ZP_00742733.1| Alkanesulfonates-binding protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|168139794|ref|ZP_02583023.1| Alkanesulfonates-binding protein [Bacillus cereus G9842]
gi|74489585|gb|EAO52996.1| Alkanesulfonates-binding protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 328
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 35/256 (13%)
Query: 7 FTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYD----S 62
F +L A L+I++ G +KS+A +KE T+ +G + P ++A+K G ++
Sbjct: 5 FKVLSFA-LAISVCLLGCEKSTASSKKEDVTIQIGIQQGLS--PLLLAKKKGWFEEEFKK 61
Query: 63 LGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR---- 118
G+K++ +F S A S ++ + + QA GI + Y R
Sbjct: 62 EGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGFTEIANT-SYARKGTG 120
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE- 177
+++ KD S++ LKGK + +++ + R ++ G+D +VN I L+ +
Sbjct: 121 ILVQKDSKIASVKDLKGKKIAVAKGSSAFNLLYRALDKEGIDAK-----DVNVIQLQPDE 175
Query: 178 ---MLRSGQIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIR 226
SG +DA + DPFI++ +ADG VS+ + +T FA +
Sbjct: 176 AQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEF--LITRTKFA----K 229
Query: 227 EKQEAIDILLRGYDLA 242
E E ++ L+ Y+ A
Sbjct: 230 EHPELVEKFLKVYEKA 245
>gi|170728963|ref|YP_001762989.1| NMT1/THI5 like domain protein [Shewanella woodyi ATCC 51908]
gi|169814310|gb|ACA88894.1| NMT1/THI5 like domain protein [Shewanella woodyi ATCC 51908]
Length = 318
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 119/258 (46%), Gaps = 36/258 (13%)
Query: 15 LSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYS 74
+S+ L +C K + T+++ P Y +A+ G + +GL +++ + +
Sbjct: 10 ISLLLVACSPKPVTK-------TITIAINPWPGYELLYLAESKGFFKQVGLDIKLSQTAT 62
Query: 75 PNERDAAFHSGNVEG---TVIDYTGAAMQQAGGIDLQLVMRLD---GYFRLVMSKDYTGE 128
++ A+ SG V+G T+++ A Q+ GG L +V+ D G +V +D+ +
Sbjct: 63 LSDAQRAYISGRVDGFASTIVEAVQA--QEFGGDPLNIVLLADYSNGGDLIVSHEDF--K 118
Query: 129 SLETLKGKNLGISRNTVIEYTTDRIINT--AGLDESEITKTEVNKIPLRLEMLRSGQIDA 186
+L LKG+ +G +++ Y R + LD+ EI E L+ L SG IDA
Sbjct: 119 TLNQLKGQKVGCEVSSLGIYILARALAVYDMSLDDVEIVNMEQGN---ALQALNSGHIDA 175
Query: 187 AVLPDPFITIAMADGMMSLVSTQDLGIFVTGAM---------FAGSVIREKQEAIDILLR 237
V P+ + +++ S + +F T + F+ +VI+ + + L +
Sbjct: 176 MVTYPPY-----SFEILNSTSQKSHKVFTTAEIPNEILDTVSFSQNVIKANPDLVPKLQQ 230
Query: 238 GYDLAVDYILSHDRKAIR 255
+ LA DY+ H +AI+
Sbjct: 231 AWQLAYDYLEQHPDEAIQ 248
>gi|124521494|ref|ZP_01696415.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Bacillus coagulans 36D1]
gi|124496754|gb|EAY44335.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Bacillus coagulans 36D1]
Length = 334
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 142/325 (43%), Gaps = 30/325 (9%)
Query: 4 FSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDS- 62
FSF +LV A+L+ + + +A K T+ +G + P ++ + +G +
Sbjct: 14 FSF--ILVFALLAACSNHGKKENKTAQTVKSENTIKIGYQKN---CPLLILKASGTLEKR 68
Query: 63 ---LGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLV----MRLDG 115
LG+K+E +F S + +SGN++ + QA G +L+ V + +G
Sbjct: 69 LKPLGVKVEWYEFQSGTALLESLNSGNIDFGRTGDSPPIFAQASGSNLKYVGVGKSKYEG 128
Query: 116 YFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLR 175
LV K+ T S+ LKGK +G ++ + Y + + GL +IT + R
Sbjct: 129 AAILV-KKNSTIRSVADLKGKKVGFAKGSSSHYFLVKALEKNGLSYKDITPAYLQPGDAR 187
Query: 176 LEMLRSGQIDAAVLPDPFITIAMADGMM-SLVS----TQDLGIFVTGAMFAGSVIREKQE 230
+ G IDA V+ DPF A G +LV+ T D F+ + +++ ++
Sbjct: 188 V-AFEQGTIDAWVIWDPFTADAEVTGHARTLVTGEGYTTDRDYFLATPAY----LKKHEK 242
Query: 231 AIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKP----TIE 286
+ I+L + + H + + +L + +G+ + + + + +G P I+
Sbjct: 243 IVQIVLDEVKKSSAWANEHPAE-LTELLSKALGIDQKAI-KIAVDRREYGLDPFTPAIIQ 300
Query: 287 DLQQTIDWLHAKKLVPSDYTGKDLI 311
+ QQ D + KL+P KD I
Sbjct: 301 EQQQIADKFYELKLIPKKVNVKDNI 325
>gi|156450322|ref|ZP_02056702.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium
chloromethanicum CM4]
gi|156190817|gb|EDO23006.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium
chloromethanicum CM4]
Length = 324
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 19/253 (7%)
Query: 62 SLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR--- 118
+LG +++ +F S A ++G V+ T QA L V +
Sbjct: 65 ALGYRVQWSEFPSGPPLMEALNAGAVDFGSAGETPPIFAQAASDVLAYVAHEPAAPKGEA 124
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEM 178
+++ K +S+ L+GK + +++ + + Y R I AGL ++IT + R
Sbjct: 125 ILVPKTSPAQSVADLRGKKVALNKGSNVHYLLVRAIEAAGLTLADITPVYLAPADARAAF 184
Query: 179 LRSGQIDAAVLPDPFITIAMADGMMSLVS-----TQDLGIFVTGAMFAGSVIREKQEAID 233
R G +DA V+ DP+ A A G +++ + +++ FA E A+D
Sbjct: 185 ER-GAVDAWVIWDPYFAAAEAGGNARVLADGTGLVPNHQFYLSSKSFAA----ENGPALD 239
Query: 234 ILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKP----TIEDLQ 289
++ VD + A+ L VG+P P++ + L T+G +P ++ Q
Sbjct: 240 AIVAAV-AEVDAWAKDNTDAVAKELSPSVGIPAPIL-SIALKRQTYGIRPLDEAVTKEQQ 297
Query: 290 QTIDWLHAKKLVP 302
+ D H KLVP
Sbjct: 298 RIADTFHGLKLVP 310
>gi|119962868|ref|YP_948274.1| putative sulfonate ABC transporter, solute-binding protein
[Arthrobacter aurescens TC1]
gi|119949727|gb|ABM08638.1| putative sulfonate ABC transporter, solute-binding protein
[Arthrobacter aurescens TC1]
Length = 330
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 122/265 (46%), Gaps = 44/265 (16%)
Query: 9 LLVLAVLSITLSSCG--NKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLK 66
L + AVLS+TLS+CG + ++A TL +G + +A G + GL
Sbjct: 7 LALAAVLSMTLSACGGGSGPATAPAADGTTTLKVGTIGIGSDAGIRLAADKGYFKEQGLN 66
Query: 67 LEIVKFYSPNERDAAFHSGNVEGTVIDYTGA-----AMQQAGGIDLQLVMRLDGY----- 116
+EI +P AA SG ++ + YT + A+ Q + L+++ DGY
Sbjct: 67 VEISVIANPPAGIAAAQSGQID---LTYTPSIPLLNALSQ--NVPLKIIAAADGYKDGAS 121
Query: 117 ----------FRLVMSKDYTGESLETLKGKNLGI-SRNTVIEYTTDRIINTAGLDESEIT 165
L++ + T + L+GK++ + +R +E T +++ G D +++
Sbjct: 122 EGADLNRVDDTGLLVQQGSTINRPKDLEGKSVSVPARKAQLEVTVSKLVKDDGGDPAKVN 181
Query: 166 KTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVS-------TQDLGIFVTGA 218
++ L+ L SG++DAA L PF + A ++G L S +G++V+GA
Sbjct: 182 WMVLDPSSA-LQSLNSGRVDAASLVAPFTSKAASEGNRLLASPGVEFFEQGAIGLWVSGA 240
Query: 219 MFAGSVIREKQEAIDILLRGYDLAV 243
+ ++ K++A L G+ A+
Sbjct: 241 ----NTVKSKEKA----LEGFKTAI 257
>gi|167937243|ref|ZP_02524318.1| Alkanesulfonates-binding protein [Bacillus cereus AH1134]
Length = 328
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 34/248 (13%)
Query: 15 LSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYD----SLGLKLEIV 70
L+I++ G +KS+A +KE T+ +G + P ++A+K G ++ G+K++
Sbjct: 12 LAISVCLLGCEKSTASSKKEDVTIQIGIQQGLS--PLLLAKKKGWFEEEFKKEGVKVKWT 69
Query: 71 KFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR----LVMSKDYT 126
+F S A S ++ + + QA GI + Y R +++ KD
Sbjct: 70 EFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGFTEIANT-SYARKGTGILVQKDSK 128
Query: 127 GESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE----MLRSG 182
S++ LKGK + +++ + R ++ G+D +VN I L+ + SG
Sbjct: 129 IASVKELKGKKIAVAKGSSAFNLLYRALDKEGIDAK-----DVNVIQLQPDEAQPAFESG 183
Query: 183 QIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDI 234
+DA + DPFI++ +ADG VS+ + +T FA +E E ++
Sbjct: 184 SVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEF--LITRTKFA----KEHPELVEK 237
Query: 235 LLRGYDLA 242
L+ Y+ A
Sbjct: 238 FLKVYEKA 245
>gi|13475925|ref|NP_107495.1| hypothetical protein mlr7112 [Mesorhizobium loti MAFF303099]
gi|14026685|dbj|BAB53281.1| mlr7112 [Mesorhizobium loti MAFF303099]
Length = 335
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 21/242 (8%)
Query: 34 EPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLK-LEIVKFYSPNERDAAFHSGNVEGTVI 92
E +G P + Y + VA G++ + GL ++IV F + +AA SG ++ I
Sbjct: 37 EAGPFKIGIEPWLGYGQWHVADAKGLFKANGLSDVQIVNFAEDKDINAALASGQLDAANI 96
Query: 93 DYTGAAMQQAGGIDLQLVMRLDGYF---RLVMSKDYTGESLETLKGKNLGISRNTVIEYT 149
A A G+ +++V+ LD ++ KD T S+ LKGK + E T
Sbjct: 97 ATHTAMGMVAAGLPVKIVLLLDVSMTADAIIAGKDVT--SIADLKGKQVAFE-----EGT 149
Query: 150 TDRIINTAGLDESEITKTEVNKIPLRLE----MLRSGQIDAAVLPDPFITIAMA---DGM 202
T I+ L + ++ +V +P+ L +G++ AV +P++T+AMA D
Sbjct: 150 TSDILLKYALARNGMSIADVQPVPMPASDAGGALIAGRVPVAVTYEPYLTVAMAQNKDVK 209
Query: 203 MSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYDLAV-DYILSHDRKAIRNILIED 261
+ + +D G+ + VI+ + + +++ +D A+ DY + D R I+ +
Sbjct: 210 LLFSAGEDPGLISDVLVVRDEVIKSRPGQVLAMIKSWDAALKDY--NADTPGGRAIIAKA 267
Query: 262 VG 263
VG
Sbjct: 268 VG 269
>gi|150015500|ref|YP_001307754.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Clostridium
beijerinckii NCIMB 8052]
gi|149901965|gb|ABR32798.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Clostridium
beijerinckii NCIMB 8052]
Length = 329
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 1 MKNFSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIY 60
MKN FF +L + +L++ + C + D + +G + + LP A + G +
Sbjct: 1 MKN-KFF-ILTIVILALMFTGCSKSYENDD------VVKIGYIGNFTELPLFAAYENGYF 52
Query: 61 DSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRL-DGYFRL 119
D G+K+E+VK + NE + +GN++ DY I++++ M + G +
Sbjct: 53 DKEGVKVELVKI-NDNEVEEKIKNGNIDAFTCDYKFLKWNNP-NINMKVSMGITSGAIEI 110
Query: 120 VMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE-- 177
+ SKD + + ++ K +GI+ + T IN L+++ I + + L+ E
Sbjct: 111 ITSKDSNLQKITDIENKRIGIANQG--DGTMAAAINV--LNKNNINDNSIKWVYLKDENP 166
Query: 178 --MLRSGQIDAAVLPD 191
+ +G++DAAV+ D
Sbjct: 167 TTAIENGEVDAAVVWD 182
>gi|118478252|ref|YP_895403.1| alkanesulfonates-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|168165667|ref|ZP_02600896.1| alkanesulfonates-binding protein [Bacillus cereus 03BB108]
gi|118417477|gb|ABK85896.1| alkanesulfonates-binding protein [Bacillus thuringiensis str. Al
Hakam]
Length = 328
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 34/248 (13%)
Query: 15 LSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSL----GLKLEIV 70
L+I+L G +KS+A +KE T+ +G + P ++AQK G ++ G+K++
Sbjct: 12 LAISLFLFGCEKSTASSKKEDVTVQIGIQQGLS--PLLLAQKKGWFEEEFKKEGVKVKWT 69
Query: 71 KFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR----LVMSKDYT 126
+F S A S ++ + + QA GI+ + Y R +++ KD
Sbjct: 70 EFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEFTEIANT-SYARKGTGILVQKDSK 128
Query: 127 GESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE----MLRSG 182
S++ LKGK + +++ + R ++ G+D +VN I L+ + SG
Sbjct: 129 ITSVKELKGKKIAVAKGSSAFNLLYRALDKEGIDAK-----DVNVIQLQPDEAQPAFESG 183
Query: 183 QIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDI 234
+DA + DPFI++ + DG + VS+ + + FA +E E ++
Sbjct: 184 SVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEF--LIARTKFA----KEHPELVEK 237
Query: 235 LLRGYDLA 242
L+ Y+ A
Sbjct: 238 FLKVYEKA 245
>gi|37519744|ref|NP_923121.1| hypothetical protein gll0175 [Gloeobacter violaceus PCC 7421]
gi|35210735|dbj|BAC88116.1| gll0175 [Gloeobacter violaceus PCC 7421]
Length = 338
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 28/249 (11%)
Query: 11 VLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIV 70
VL + + L+ C D P S G + + Y P +A++ G L +
Sbjct: 16 VLTLGGLALAGC---TGGGDGATRPAGTSFGIVDWVGYTPLYIAREKGY---LPEAFNVR 69
Query: 71 KFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLV----MSKDYT 126
F SP + AF G +EG GA +A G DL++VM +D R V + ++
Sbjct: 70 NFPSPGQGTLAFAGGKLEGGAEVTAGAVDVRAKGKDLRVVMVVD---RSVGGDGILARHS 126
Query: 127 GESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIP-LRLEMLRSGQID 185
L LKG+ + + +V + + I AGL +IT +N P RSGQ++
Sbjct: 127 IRDLADLKGRKVALELGSVSHFFFLQAIAGAGLSGRDITI--INTPPDAAGAAYRSGQVE 184
Query: 186 AAVLPDPFI---TIAMADGMMSLVSTQ------DLGIFVTGAMFAGSVIREKQEAIDILL 236
AAV P++ A ADG + S + D I+V A F + Q +D +L
Sbjct: 185 AAVTYAPYLGSANRAQADGRILFDSARLPDAISD--IYVFDARFVQAHPEVVQGFVDAVL 242
Query: 237 RGY-DLAVD 244
+G DL D
Sbjct: 243 KGLADLQAD 251
>gi|168158573|ref|ZP_02593806.1| sulfonate ABC transporter, sulfonate-binding protein, putative
[Bacillus cereus H3081.97]
Length = 328
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 35/256 (13%)
Query: 7 FTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSL--- 63
F +L A L+I+L G +KS+A +KE T+ +G + P ++AQK G ++
Sbjct: 5 FKVLSFA-LAISLFLFGCEKSTASSKKEDVTVQIGIQQGLS--PLLLAQKKGWFEEEFKK 61
Query: 64 -GLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR---- 118
G+K++ +F S A S ++ + + QA GI+ + Y R
Sbjct: 62 EGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEFTEIANT-SYARKGTG 120
Query: 119 LVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLE- 177
+++ KD S++ LKGK + +++ + R LD+ I +VN I L+ +
Sbjct: 121 ILVQKDSKITSVKDLKGKKIAVAKGSSAFNLLYR-----ALDKEGINAKDVNVIQLQPDE 175
Query: 178 ---MLRSGQIDAAVLPDPFITI--------AMADGMMSLVSTQDLGIFVTGAMFAGSVIR 226
SG +DA + DPFI++ + DG VS+ + I T FA +
Sbjct: 176 AQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIART--KFA----K 229
Query: 227 EKQEAIDILLRGYDLA 242
E E ++ L+ Y+ A
Sbjct: 230 EHPELVEKFLKVYEKA 245
>gi|27381592|ref|NP_773121.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
USDA 110]
gi|27354760|dbj|BAC51746.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
USDA 110]
Length = 351
Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 37 TLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTG 96
T+++G + YLP V+A++ G YD GL +E+V ++ A G+ + +
Sbjct: 39 TIAVGGGSCLCYLPTVLAKQLGEYDKAGLNVELVDLKGGSDALKAVLGGSADVVSGYFDH 98
Query: 97 AAMQQAGGIDLQLVMRLDGY--FRLVMSKDYTGE--SLETLKGKNLGISR-NTVIEYTTD 151
A +LQ + D Y LV+S +T E S++ L GK +G+S + ++
Sbjct: 99 CVNLAAKKQELQAFVVYDRYPGLVLVVSPAHTNEIKSIKDLAGKKVGVSAPGSSTDFFLK 158
Query: 152 RIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITI 196
++ GLD + V + + GQIDAAV+ DP +T+
Sbjct: 159 YMLKRNGLDPAGTAVIGVGLGATAVAAMEQGQIDAAVMLDPSVTV 203
>gi|86750444|ref|YP_486940.1| extracellular solute-binding protein, family 3 [Rhodopseudomonas
palustris HaA2]
gi|86573472|gb|ABD08029.1| extracellular solute-binding protein, family 3 [Rhodopseudomonas
palustris HaA2]
Length = 341
Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 37 TLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSG--NVEGTVIDY 94
T+++G + YLP V+A++ G YD GL +E+V ++ A G +V D+
Sbjct: 29 TIAIGGGACLCYLPTVLAKQLGEYDKAGLSVELVDLKGGSDALKAVLGGSADVVSGYFDH 88
Query: 95 TG--AAMQQAGGIDLQLVMRLDGY--FRLVMSKDYTGE--SLETLKGKNLGISR-NTVIE 147
T AA +Q ++Q + D Y LV+S +T + S++ L GK +G+S + +
Sbjct: 89 TVNLAAKKQ----EMQSFVVYDRYPGLVLVVSPGHTAKIASVKDLAGKKVGVSAPGSSTD 144
Query: 148 YTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMA 199
+ ++ G+D +++ V + ++ GQI+AAV+ DP +TI A
Sbjct: 145 FFLKYLLKKNGVDPNDVAVIGVGLGATAVAAMQQGQIEAAVMLDPAVTILQA 196
>gi|146282186|ref|YP_001172339.1| hypothetical protein PST_1823 [Pseudomonas stutzeri A1501]
gi|145570391|gb|ABP79497.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
Length = 343
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 38 LSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGA 97
+G + MD +VA + G+Y GL +E+++F S + A G ++ V+ +T A
Sbjct: 38 FKVGYIRVMDDAQAMVAHEAGLYKKHGLDVELIEFSSGTDLIKAIVGGQLDTGVLGFTNA 97
Query: 98 AMQQAGGIDLQLVM-RLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINT 156
+ G DL++V GY +++ +D + + LK + L R T D ++
Sbjct: 98 VAWASKGADLKVVGGAQQGYHSILVREDTDIQDVAGLKDRTLASQREG---STADAVLRG 154
Query: 157 AGLDESEITKTEVNKI----PLRLEMLRSGQIDAAVLPDPFITIA 197
L + + ++VN + + ++ L SG++DAA L +P+ IA
Sbjct: 155 VTLKNAGLKPSDVNIMGVSPAVAVQSLVSGRVDAAFLFEPYDRIA 199
>gi|163708238|ref|ZP_02125083.1| putative signal peptide protein [Methylobacterium nodulans ORS
2060]
gi|162427469|gb|EDQ38162.1| putative signal peptide protein [Methylobacterium nodulans ORS
2060]
Length = 340
Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 13/277 (4%)
Query: 10 LVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPS-MDYLPFVVAQKTGIYDSLGLKLE 68
+ LA+LS L+ G S A+++ E + +GA + M YLP +VA++ ++ G+ +
Sbjct: 4 ITLAILSTALAIAGAPVSQAEEKPEKTEVHIGAASTGMTYLPLLVAKQRRFFEDEGITVT 63
Query: 69 IVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGG---IDLQLVMRLDGYFRLVMSKDY 125
I F ++ A G+ + Y+ A G + + + + K++
Sbjct: 64 IAAFSGGSKALEALLGGSSDAVAGAYSNTLTMAAKGQKLVTFAAQVNCPAWIFGLAKKNF 123
Query: 126 TG-ESLETLKGKNLGISR-NTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQ 183
S+ LKGK +G+S + I++ AGL +++ V + + +++GQ
Sbjct: 124 GKVSSIADLKGKRIGVSAPGSSTHMAVTYILHKAGLKPEDVSFIGVGQAAGAVAAIKAGQ 183
Query: 184 IDAAVLPDPFITIAMADGM---MSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYD 240
+DA ++ DP T+ M G ++ + T++ V GA + S + + ID R
Sbjct: 184 LDALIVNDPVATLLMDAGEIRPLAEMRTEEGNKQVFGADYPESSLYSTKAFIDKNPRTIQ 243
Query: 241 LAVDYILSHDRKAIRNILIEDVGV---PEPLVDDVIL 274
+ I+ ++ I E+V PE +VDD L
Sbjct: 244 AITNAIVRAEQW-IARATPEEVAASVPPEYMVDDKTL 279
>gi|91786272|ref|YP_547224.1| extracellular solute-binding protein, family 3 [Polaromonas sp.
JS666]
gi|91695497|gb|ABE42326.1| extracellular solute-binding protein, family 3 [Polaromonas sp.
JS666]
Length = 310
Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 31/285 (10%)
Query: 49 LPFVVAQKTGIYDSLGLKLEIVKFYSPNERD--AAFHSGNVEGTVIDYTGAAMQQAGGID 106
+P VAQK G ++S GL++E+ ++PN A +G+ + + + Q G +
Sbjct: 17 VPIWVAQKFGFFESNGLQVELS--FTPNSGALVQALMTGSADIALAGFDNFVAYQEGQGE 74
Query: 107 LQLVMRLD---------GYFRLVMSKDYTGESLETLKGKNLGI-SRNTVIEYTTDRIINT 156
L + D G+ LV + T S+E LKGK + + + T + I+
Sbjct: 75 AALELPPDIFSFMGGDSGFLTLVAKGEVT--SMERLKGKKVSVDAMTTGFAFALREILEK 132
Query: 157 AGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQD-LGIFV 215
GL + +I + R L +GQ DA +L P+ +AM G ++L + ++ LG ++
Sbjct: 133 EGLRDGDIEYVKAGGTAQRFLGLMAGQYDATLLRTPYEMLAMDRGFVALTTVREQLGHYM 192
Query: 216 --TGAMFAGSVIREKQEAIDILLRGYDLAVDYILS-HDRKAIRNILIEDVGVPEPLVDDV 272
GA + + + ++ Y A+D++ + +R +L+E V + +
Sbjct: 193 GTVGATRRAWASSHESQLLQFIVS-YRAALDWLYTPGNRNTAVELLVEKVAGLDTAIASS 251
Query: 273 ILPDYTHGQKPTIEDLQ------QTIDWLHAKKLVPSDYTGKDLI 311
L Q+ I D++ QT+ L +K P KDLI
Sbjct: 252 ALDLLLDEQEGLIADMRIDPMSVQTVLKLRSKYGTPQ----KDLI 292
>gi|153953663|ref|YP_001394428.1| Predicted transporter protein [Clostridium kluyveri DSM 555]
gi|146346544|gb|EDK33080.1| Predicted transporter protein [Clostridium kluyveri DSM 555]
Length = 359
Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 126/298 (42%), Gaps = 35/298 (11%)
Query: 1 MKNFSFFTLLVLAVLS-ITLSSCGNKK---SSADKQKEPYTLSLGAMPSMDYLPFVVAQK 56
MKN +L LS + S+CG+KK S+ADK KE + + P V+A K
Sbjct: 1 MKNKKLALILSTVFLSTLIFSACGSKKDEASNADKSKELQVVKTWSRKDCTAAPIVIADK 60
Query: 57 TGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMR---- 112
G + GLK+E P +R + +GN + A+ GG ++ V R
Sbjct: 61 LGYFKEQGLKVEYTGDTQPAQRLPSILNGNNDFGDAHPNNLAIAAQGGAKIKAVARSIVE 120
Query: 113 ----LDGYFRL-----VMSKDYTGESLETLKGKNLGI-----SRNTVIEYTTDRIINTAG 158
Y L V +K+ T ++L +K + + SRN+ ++Y + ++
Sbjct: 121 PSKDTTDYEHLQHMWWVSNKNGTIKTLADIKNYDGKVKVGTNSRNSCVDYLSYKLF--VE 178
Query: 159 LDESEITKTEVNKIP--LRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVT 216
+ I K E ++P ++ L+ G I AV+ P+ G+ ++++T +
Sbjct: 179 QNNIPIDKIEWIQMPDVEQVLALKKGLIQIAVVHPPYYKSIEDSGIGNILTTSEPIAGEN 238
Query: 217 GAM----FAGSVIREKQEAIDILLRGYDLAVDYI-----LSHDRKAIRNILIEDVGVP 265
G F+ S I + E ++ + A YI + +R + ++ E +GVP
Sbjct: 239 GGTYLYYFSDSFIEKHPEEVEKFIVAVKKAERYINESIPNAEERAKVNKMVEEAIGVP 296
>gi|154247141|ref|YP_001418099.1| NMT1/THI5 like domain protein [Xanthobacter autotrophicus Py2]
gi|154161226|gb|ABS68442.1| NMT1/THI5 like domain protein [Xanthobacter autotrophicus Py2]
Length = 338
Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
Query: 27 SSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGN 86
S+ +K TL +G P + YLP +A++ G + GL + I F + A G+
Sbjct: 22 SAQQAEKPKLTLGVGGKPLLYYLPLTIAERKGFFKDEGLDVTINDFGGGAKSLQALIGGS 81
Query: 87 VEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFR---LVMSKDYTGESLETLKGKNLGISR- 142
++ Y QA G D+ V+ L G F LV KD S++ LKG +G++
Sbjct: 82 IDVVTGAYEHTIRMQAKGQDIVSVIEL-GRFPGIVLVARKDRPINSVKDLKGAKIGVTAP 140
Query: 143 NTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADG 201
+ + + ++ GL ++ V + ++ G+IDA DP IT DG
Sbjct: 141 GSSTNFFVNFLLAKEGLKPEDVAFIGVGGGASAVAQMKRGEIDAMSNLDPVITKLEDDG 199
>gi|163856870|ref|YP_001631168.1| putative sulfonate/nitrate transport system substrate-binding
protein [Bordetella petrii DSM 12804]
gi|163260598|emb|CAP42900.1| putative sulfonate/nitrate transport system substrate-binding
protein [Bordetella petrii]
Length = 332
Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 38 LSLGAMPSMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGA 97
+G + MD +VAQ+ Y GL E+++F S + A G + V+ +T A
Sbjct: 27 FRVGYLRVMDDAQAIVAQEGEFYKKEGLDTELIEFKSGTDLIKAIVGGQADIGVLGFTNA 86
Query: 98 AMQQAGGIDLQLVM-RLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINT 156
+ G DL++V GY LV+ D E++ LKGK L + T D ++
Sbjct: 87 VAWASKGADLKVVGGAQQGYHSLVVRDDAGIENIADLKGKTLASQKEG---STADVVLKG 143
Query: 157 AGLDESEITKTEVNKI----PLRLEMLRSGQIDAAVLPDPFITIA 197
L E ++ ++VN + + ++ L ++DAA L +P+ IA
Sbjct: 144 VVLKEGKLQPSDVNIMGVSPAVAVQSLVGKRVDAAFLFEPYDRIA 188
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 884,634,002
Number of sequences in database: 2,620,852
Database: /apps/blastdb/nr.01
Posted date: May 10, 2008 4:52 AM
Number of letters in database: 976,814,986
Number of sequences in database: 2,761,530
Database: /apps/blastdb/nr.02
Posted date: May 10, 2008 4:46 AM
Number of letters in database: 360,829,861
Number of sequences in database: 1,132,722
Lambda K H
0.319 0.137 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,286,795,327
Number of Sequences: 6515104
Number of extensions: 52630482
Number of successful extensions: 136156
Number of sequences better than 1.0e-04: 102
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 136050
Number of HSP's gapped (non-prelim): 107
length of query: 312
length of database: 2,222,278,849
effective HSP length: 133
effective length of query: 179
effective length of database: 1,355,770,017
effective search space: 242682833043
effective search space used: 242682833043
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)