BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu0817
(92 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379348|ref|NP_721303.1| hypothetical protein SMU.896 [... 142 8e-33
gi|109645512|ref|ZP_01369432.1| addiction module toxin, Rel... 81 2e-14
gi|115523413|ref|YP_780324.1| addiction module toxin, RelE/... 77 3e-13
gi|42526021|ref|NP_971119.1| hypothetical protein TDE0505 [... 77 4e-13
gi|62195081|ref|YP_220430.1| ORF100 [Leptospirillum ferroox... 74 2e-12
gi|153812211|ref|ZP_01964879.1| hypothetical protein RUMOBE... 73 4e-12
gi|90422887|ref|YP_531257.1| Addiction module toxin, RelE/S... 73 4e-12
gi|148324082|gb|EDK89332.1| hypothetical protein FNP_1551 [... 73 5e-12
gi|150009290|ref|YP_001304033.1| hypothetical protein BDI_2... 72 9e-12
gi|67458726|ref|YP_246350.1| hypothetical protein RF_0334 [... 72 1e-11
gi|42525819|ref|NP_970917.1| hypothetical protein TDE0303 [... 69 6e-11
gi|89894779|ref|YP_518266.1| hypothetical protein DSY2033 [... 69 1e-10
gi|114566602|ref|YP_753756.1| hypothetical protein Swol_107... 68 2e-10
gi|34762337|ref|ZP_00143340.1| hypothetical protein [Fusoba... 67 2e-10
gi|126663458|ref|ZP_01734455.1| hypothetical protein FBBAL3... 67 3e-10
gi|123442204|ref|YP_001006185.1| hypothetical protein YE192... 66 6e-10
gi|121611895|ref|YP_999702.1| addiction module toxin, RelE/... 66 6e-10
gi|150009037|ref|YP_001303780.1| hypothetical protein BDI_2... 66 8e-10
gi|149374835|ref|ZP_01892608.1| hypothetical protein MDG893... 65 1e-09
gi|29375141|ref|NP_814294.1| conserved hypothetical protein... 65 1e-09
gi|126667338|ref|ZP_01738311.1| hypothetical protein MELB17... 65 2e-09
gi|15902297|ref|NP_357847.1| hypothetical protein spr0253 [... 64 2e-09
gi|46447557|ref|YP_008922.1| hypothetical protein pc1923 [C... 64 2e-09
gi|15900210|ref|NP_344814.1| hypothetical protein SP_0276 [... 64 4e-09
gi|153871237|ref|ZP_02000461.1| conserved hypothetical prot... 64 4e-09
gi|82775616|ref|YP_401963.1| hypothetical protein SDY_0251 ... 63 5e-09
gi|124526888|ref|ZP_01698770.1| addiction module toxin, Rel... 62 8e-09
gi|74310867|ref|YP_309286.1| hypothetical protein SSON_0267... 62 9e-09
gi|148983682|ref|ZP_01817001.1| hypothetical protein CGSSp3... 62 1e-08
gi|15829506|ref|NP_308279.1| hypothetical protein ECs0252 [... 62 1e-08
gi|154490318|ref|ZP_02030579.1| hypothetical protein PARMER... 62 1e-08
gi|16128211|ref|NP_414760.1| predicted toxin of the YafQ-Di... 61 2e-08
gi|16766804|ref|NP_462419.1| putative cytoplasmic protein [... 60 3e-08
gi|157077440|gb|ABV17148.1| conserved hypothetical protein ... 60 4e-08
gi|15645510|ref|NP_207685.1| hypothetical protein HP0892 [H... 59 6e-08
gi|15611898|ref|NP_223549.1| hypothetical protein jhp0831 [... 59 8e-08
gi|10955844|ref|NP_053145.1| ORF10 [Yersinia pestis] >gi|61... 59 1e-07
gi|148360242|ref|YP_001251449.1| hypothetical protein LPC_2... 58 2e-07
gi|153091014|gb|EDN73019.1| hypothetical protein MHA_0019 [... 58 2e-07
gi|15645512|ref|NP_207687.1| hypothetical protein HP0894 [H... 57 2e-07
gi|118475516|ref|YP_891674.1| addiction module toxin, RelE/... 57 2e-07
gi|108563298|ref|YP_627614.1| hypothetical protein HPAG1_08... 57 3e-07
gi|46447546|ref|YP_008911.1| hypothetical protein pc1912 [C... 54 2e-06
gi|42519166|ref|NP_965096.1| hypothetical protein LJ1241 [L... 54 3e-06
gi|17934842|ref|NP_531632.1| hypothetical protein Atu0934 [... 54 3e-06
gi|15888273|ref|NP_353954.1| hypothetical protein AGR_C_170... 54 3e-06
gi|118496979|ref|YP_898029.1| hypothetical protein FTN_0370... 54 4e-06
gi|67154076|ref|ZP_00415821.1| Conserved hypothetical prote... 54 4e-06
gi|6685132|gb|AAF23803.1|AF213822_18 hypothetical protein [... 53 5e-06
gi|152993696|ref|YP_001359417.1| hypothetical protein SUN_2... 53 5e-06
gi|57505073|ref|ZP_00371021.1| Domain of unknown function (... 52 8e-06
>gi|24379348|ref|NP_721303.1| hypothetical protein SMU.896 [Streptococcus mutans UA159]
gi|24377274|gb|AAN58609.1|AE014931_2 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 92
Score = 142 bits (357), Expect = 8e-33, Method: Composition-based stats.
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH
Sbjct: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQMLGM 92
IESDWLLAYQVLDDELVLLLIDTGSHAQMLGM
Sbjct: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQMLGM 92
>gi|109645512|ref|ZP_01369432.1| addiction module toxin, RelE/StbE family [Desulfitobacterium
hafniense DCB-2]
gi|109643461|gb|EAT53014.1| addiction module toxin, RelE/StbE family [Desulfitobacterium
hafniense DCB-2]
Length = 90
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 57/90 (63%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M KI + QFKK LK V+K+G ++N + +V L Q LP R+H LKG + G RE H
Sbjct: 1 MYKIFPSTQFKKDLKLVLKRGYNMNLMDEVVTTLAQGRTLPDKYRDHALKGNYEGCRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I DWLL Y++ ++EL+L L TG+H+ +
Sbjct: 61 ITPDWLLVYELTENELILYLTRTGTHSDLF 90
>gi|115523413|ref|YP_780324.1| addiction module toxin, RelE/StbE family [Rhodopseudomonas
palustris BisA53]
gi|115517360|gb|ABJ05344.1| addiction module toxin, RelE/StbE family [Rhodopseudomonas
palustris BisA53]
Length = 90
Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M ++ QT FK+ LK++ K+ D+ KL AI+ LL LP+A R H LKG+WRG E H
Sbjct: 1 MKELDQTGSFKRDLKRIAKRDYDLAKLAAILTLLQTDQPLPVACRPHALKGKWRGFLECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I DWLL YQ D +LL+ TG+H+ +
Sbjct: 61 IGPDWLLIYQT--DATRVLLVRTGTHSDLF 88
>gi|42526021|ref|NP_971119.1| hypothetical protein TDE0505 [Treponema denticola ATCC 35405]
gi|41816071|gb|AAS11000.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
Length = 93
Score = 76.6 bits (187), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 59/88 (67%)
Query: 3 KIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIE 62
+IK T QFKK +K KQ K+++KL +++LL +L R+H+L G ++G RE HIE
Sbjct: 4 EIKFTNQFKKDIKLAKKQNKNLDKLLKVIDLLSNGEKLEAKYRDHDLSGNYKGTRECHIE 63
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQML 90
DWLL Y++ +D LVL+L GSH+++
Sbjct: 64 PDWLLVYEIRNDVLVLMLYRLGSHSELF 91
>gi|62195081|ref|YP_220430.1| ORF100 [Leptospirillum ferrooxidans]
gi|61105597|gb|AAX38516.1| ORF100 [Leptospirillum ferrooxidans]
Length = 100
Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 9 QFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIESDWLLA 68
QFK+ +K+V K+GKD++KL +++ LL + S LP +H LKG WRG R+ HIE DWLL
Sbjct: 19 QFKRDVKQVQKRGKDMDKLKSLLGLLIKGSPLPANYLDHPLKGGWRGFRDAHIEPDWLLI 78
Query: 69 YQVLDDELVLLLIDTGSHAQMLG 91
Y++ D V+ TG H + G
Sbjct: 79 YKIHGD--VVRFERTGRHTDLFG 99
>gi|153812211|ref|ZP_01964879.1| hypothetical protein RUMOBE_02609 [Ruminococcus obeum ATCC 29174]
gi|149831618|gb|EDM86705.1| hypothetical protein RUMOBE_02609 [Ruminococcus obeum ATCC 29174]
Length = 93
Score = 73.2 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 54/87 (62%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIES 63
IK T +F+K LK++ K+G D++ L +++ L LPL R+H L G + G RE HI
Sbjct: 5 IKPTSKFQKDLKRIQKRGYDLSLLSDVIKKLSNGESLPLKYRDHNLIGNFCGCRECHITP 64
Query: 64 DWLLAYQVLDDELVLLLIDTGSHAQML 90
DWLL Y++ + +L L L TGSH+ +
Sbjct: 65 DWLLIYEIYEKDLYLYLTRTGSHSDLF 91
>gi|90422887|ref|YP_531257.1| Addiction module toxin, RelE/StbE [Rhodopseudomonas palustris
BisB18]
gi|90104901|gb|ABD86938.1| Addiction module toxin, RelE/StbE [Rhodopseudomonas palustris
BisB18]
Length = 90
Score = 73.2 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M + T F + LK+V K+G D+ KL I+ LL + LP + R H LKGRW G E H
Sbjct: 1 MKTLDHTGSFNRDLKRVTKRGYDLTKLAIILRLLQTDTPLPASNRPHALKGRWSGFLECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
I DWLL YQ + ++L TG+H+ + G
Sbjct: 61 IAPDWLLIYQT--EPTRVILARTGTHSDLFG 89
>gi|148324082|gb|EDK89332.1| hypothetical protein FNP_1551 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 96
Score = 73.2 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIES 63
+K T +FKK K + KQGK+I KL ++E+L + +L ++H L G ++G RE HI
Sbjct: 10 VKMTNKFKKDYKIIEKQGKNIKKLVEVIEMLAEGKQLDSKYKDHSLIGNYKGYRECHIFP 69
Query: 64 DWLLAYQVLDDELVLLLIDTGSHAQML 90
DW+L Y+ +D LVL+L TGSH+++
Sbjct: 70 DWILIYKHEEDILVLILARTGSHSELF 96
>gi|150009290|ref|YP_001304033.1| hypothetical protein BDI_2692 [Parabacteroides distasonis ATCC
8503]
gi|149937714|gb|ABR44411.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 90
Score = 72.0 bits (175), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 59/89 (66%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M +++ T FKK LK K+G +++ L ++++L + LP R H+L G++ G+ E H
Sbjct: 1 MYRLEYTTNFKKDLKTCKKRGLELHLLQRVIDILQETGTLPNQYRPHKLSGKFEGLWECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQM 89
I+SDWLL +Q D ELVL++ DTG+HA +
Sbjct: 61 IKSDWLLIWQQNDTELVLIMTDTGTHADL 89
>gi|67458726|ref|YP_246350.1| hypothetical protein RF_0334 [Rickettsia felis URRWXCal2]
gi|67004259|gb|AAY61185.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
Length = 89
Score = 72.0 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M + T+ F+K +K +K+GKD+NKL ++ELL K+ LP+ R+H+L G + G RE H
Sbjct: 1 MFRPIYTKSFEKDIKLAIKRGKDLNKLKMLIELLVNKTALPIKYRDHQLIGNFIGRRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
IE +WLL Y++ D ++ TG+H+ +
Sbjct: 61 IEPNWLLIYKI--DNECIIFERTGTHSDIF 88
>gi|42525819|ref|NP_970917.1| hypothetical protein TDE0303 [Treponema denticola ATCC 35405]
gi|41815869|gb|AAS10798.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
Length = 93
Score = 69.3 bits (168), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 60/90 (66%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
+ ++K+T QFK S+K K+G +IN L I+E L + L + +NH+L G+++GI E H
Sbjct: 2 IYQLKKTSQFKASVKLAKKRGLNINLLEGIIEKLRTDTPLGVKHKNHQLSGQFKGIWECH 61
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I+ DWLL Y ++ LV+ L+DTG+H+ +
Sbjct: 62 IQPDWLLLYLKEENNLVMTLVDTGTHSDIF 91
>gi|89894779|ref|YP_518266.1| hypothetical protein DSY2033 [Desulfitobacterium hafniense Y51]
gi|89334227|dbj|BAE83822.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 90
Score = 68.6 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML+++ + +FKK K +VK+G ++ ++ LL Q+ LP +H L G + G RE H
Sbjct: 1 MLRVRYSSRFKKDFKILVKRGYNVGLFEDVLNLLVQEKALPQKYLDHPLAGNYAGHRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I DWLL Y++ D L+L L TG+H+ +
Sbjct: 61 ITPDWLLIYKIEKDILILSLTRTGTHSDLF 90
>gi|114566602|ref|YP_753756.1| hypothetical protein Swol_1075 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337537|gb|ABI68385.1| conserved hypothetical protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 90
Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLKI+ + +FKK K +VK+G D+ L ++ LL Q+ LP +H L G + G RE H
Sbjct: 1 MLKIRYSSRFKKDFKAIVKRGYDVKLLEEVLNLLVQEKVLPQKYLDHPLTGNYAGHRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQM 89
I DWLL Y++ D L+L L TG+H+ +
Sbjct: 61 ITPDWLLIYKIEGDILILSLTRTGTHSDL 89
>gi|34762337|ref|ZP_00143340.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887991|gb|EAA25055.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 90
Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 56/90 (62%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLKIK +FKK K ++K+G ++ L I++ L + L ++H L G + G RE H
Sbjct: 1 MLKIKYHTKFKKDYKLIIKRGYNLKLLEEIIDNLANEKTLLPKNKDHSLTGNYEGFRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I DWLL Y++ ++ LVL+L+ TG+H+ +
Sbjct: 61 ITPDWLLIYRIEENNLVLVLLRTGTHSDLF 90
>gi|126663458|ref|ZP_01734455.1| hypothetical protein FBBAL38_08919 [Flavobacteria bacterium
BAL38]
gi|126624406|gb|EAZ95097.1| hypothetical protein FBBAL38_08919 [Flavobacteria bacterium
BAL38]
Length = 90
Score = 67.4 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 57/90 (63%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M I T +F KSLK K+ D++ L +++LL + +LP ++H+L G ++ E H
Sbjct: 1 MYTITTTNKFDKSLKLCKKRNYDLSLLKVVIDLLQKDGKLPQKYKSHKLSGNYKDCWECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I+ DWLL ++ D EL+LLL+DTG+H+ +
Sbjct: 61 IKPDWLLVWKQNDTELILLLLDTGTHSDLF 90
>gi|123442204|ref|YP_001006185.1| hypothetical protein YE1929 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089165|emb|CAL12009.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 92
Score = 66.2 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 3 KIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQ-KSELPLALRNHELKGRWRGIRELHI 61
+I+ + QF+K +KK K+ KD+NKL I+ LL K LP+ ++H+L+G ++G R+ HI
Sbjct: 6 EIEYSGQFQKDVKKAQKRHKDMNKLKVIMTLLINDKLPLPVVYKDHQLQGNYKGYRDAHI 65
Query: 62 ESDWLLAYQVLDDELVLLLIDTGSHAQML 90
E DWL+ Y++ DD +L TGSH+ +
Sbjct: 66 EPDWLIIYKITDD--LLRFERTGSHSDLF 92
>gi|121611895|ref|YP_999702.1| addiction module toxin, RelE/StbE family [Verminephrobacter
eiseniae EF01-2]
gi|121556535|gb|ABM60684.1| addiction module toxin, RelE/StbE family [Verminephrobacter
eiseniae EF01-2]
Length = 90
Score = 65.9 bits (159), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 9 QFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIESDWLLA 68
QFK+ +K+ K+GKD+ KL ++ LL + L + +H LKG WRG R+ HIE DWLL
Sbjct: 9 QFKRDVKRAQKRGKDMGKLKTLLSLLIEGKPLSASYLDHPLKGDWRGFRDAHIEPDWLLI 68
Query: 69 YQVLDDELVLLLIDTGSHAQML 90
Y++ D ++ TG H+ +
Sbjct: 69 YKIAGD--IVRFERTGRHSDLF 88
>gi|150009037|ref|YP_001303780.1| hypothetical protein BDI_2433 [Parabacteroides distasonis ATCC
8503]
gi|149937461|gb|ABR44158.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 91
Score = 65.9 bits (159), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIES 63
+ T +F++ +K+ K+ DIN L VE+L LP H+L G++ G+ E HI+
Sbjct: 5 VHTTSKFERDIKRCKKRHLDINLLLETVEILKNTGSLPSQYHPHKLSGKYAGLWECHIQG 64
Query: 64 DWLLAYQVLDDELVLLLIDTGSHAQML 90
DWLL + D EL+LL D G+H+ +
Sbjct: 65 DWLLIWSQDDTELILLFTDIGTHSDLF 91
>gi|149374835|ref|ZP_01892608.1| hypothetical protein MDG893_07255 [Marinobacter algicola DG893]
gi|149360724|gb|EDM49175.1| hypothetical protein MDG893_07255 [Marinobacter algicola DG893]
Length = 89
Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML +KQ +FKK +K KQ D+ +L ++E L + L R+H L G W G R+ H
Sbjct: 1 MLALKQGSRFKKDMKACRKQELDLQQLKDVIETLQKGEPLEDKHRDHGLSGHWNGWRDCH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
I DW+L Y+V DEL L TGSHA++ G
Sbjct: 61 IAPDWVLIYRVEGDELE--LARTGSHAKLFG 89
>gi|29375141|ref|NP_814294.1| conserved hypothetical protein TIGR00053 [Enterococcus faecalis
V583]
gi|21693292|gb|AAM75239.1|AF454824_33 EF0033 [Enterococcus faecalis]
gi|29342600|gb|AAO80365.1| conserved hypothetical protein TIGR00053 [Enterococcus faecalis
V583]
Length = 91
Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 58/90 (64%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML+I T QFKK KK KQGK++ KL ++ LL ++ LP ++H L G + G RE H
Sbjct: 1 MLEIFYTNQFKKDFKKAKKQGKNLEKLKEVLVLLQEQQTLPPKYKDHALTGNYIGTRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
IE DWLL Y++ D+L+L L GSH+++
Sbjct: 61 IEPDWLLIYKIDGDKLILTLARIGSHSELF 90
>gi|126667338|ref|ZP_01738311.1| hypothetical protein MELB17_15387 [Marinobacter sp. ELB17]
gi|126628283|gb|EAZ98907.1| hypothetical protein MELB17_15387 [Marinobacter sp. ELB17]
Length = 90
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML + QFK+ LK K+GKD+ K+ + LL + LP ++H LKG WR R+ H
Sbjct: 1 MLNPVYSGQFKRDLKAAKKRGKDMEKIKQPMRLLLEGQPLPAEYKDHPLKGEWRSFRDAH 60
Query: 61 IESDWLLAYQVLDDEL 76
IE DWLL Y++ D++
Sbjct: 61 IEPDWLLIYKIDGDDV 76
>gi|15902297|ref|NP_357847.1| hypothetical protein spr0253 [Streptococcus pneumoniae R6]
gi|116516116|ref|YP_815774.1| conserved hypothetical protein TIGR00053 [Streptococcus
pneumoniae D39]
gi|148988017|ref|ZP_01819480.1| hypothetical protein CGSSp6BS73_10906 [Streptococcus pneumoniae
SP6-BS73]
gi|148994698|ref|ZP_01823802.1| hypothetical protein CGSSp9BS68_08967 [Streptococcus pneumoniae
SP9-BS68]
gi|148996701|ref|ZP_01824419.1| hypothetical protein CGSSp11BS70_08395 [Streptococcus pneumoniae
SP11-BS70]
gi|149001607|ref|ZP_01826580.1| hypothetical protein CGSSp14BS69_07765 [Streptococcus pneumoniae
SP14-BS69]
gi|149006029|ref|ZP_01829758.1| hypothetical protein CGSSp18BS74_07620 [Streptococcus pneumoniae
SP18-BS74]
gi|15457803|gb|AAK99057.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076692|gb|ABJ54412.1| conserved hypothetical protein TIGR00053 [Streptococcus
pneumoniae D39]
gi|147757276|gb|EDK64315.1| hypothetical protein CGSSp11BS70_08395 [Streptococcus pneumoniae
SP11-BS70]
gi|147760065|gb|EDK67054.1| hypothetical protein CGSSp14BS69_07765 [Streptococcus pneumoniae
SP14-BS69]
gi|147762385|gb|EDK69346.1| hypothetical protein CGSSp18BS74_07620 [Streptococcus pneumoniae
SP18-BS74]
gi|147926481|gb|EDK77554.1| hypothetical protein CGSSp6BS73_10906 [Streptococcus pneumoniae
SP6-BS73]
gi|147927098|gb|EDK78138.1| hypothetical protein CGSSp9BS68_08967 [Streptococcus pneumoniae
SP9-BS68]
Length = 92
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKG--RWRGIRE 58
MLKI+ +QFKK K +K+G L ++ L Q+ E P R+H L ++G+RE
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARYRDHSLTASKHFQGVRE 60
Query: 59 LHIESDWLLAYQVLDDELVLLLIDTGSHAQML 90
H + DWLL Y+V EL+L L+ TGSH+ +
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>gi|46447557|ref|YP_008922.1| hypothetical protein pc1923 [Candidatus Protochlamydia
amoebophila UWE25]
gi|46401198|emb|CAF24647.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 92
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLK K T+QFKK LKK + +L+ ++ L + LP R+H L G W+G RE H
Sbjct: 1 MLKPKNTKQFKKDLKKYEHNKLILKELYLVIAYLLNEQVLPNQYRDHALLGNWQGRRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQMLGM 92
I++D LL Y++L +E + GSH+++L M
Sbjct: 61 IKNDTLLIYKLLPEERAIRFERIGSHSEVLNM 92
>gi|15900210|ref|NP_344814.1| hypothetical protein SP_0276 [Streptococcus pneumoniae TIGR4]
gi|111658312|ref|ZP_01409001.1| hypothetical protein SpneT_02000502 [Streptococcus pneumoniae
TIGR4]
gi|14971748|gb|AAK74454.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
Length = 92
Score = 63.5 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKG--RWRGIRE 58
MLKI+ +QFKK K +K+G L ++ L Q+ E P R+H L ++G+RE
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARNRDHSLTASKHFQGVRE 60
Query: 59 LHIESDWLLAYQVLDDELVLLLIDTGSHAQML 90
H + DWLL Y+V EL+L L+ TGSH+ +
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>gi|153871237|ref|ZP_02000461.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152072297|gb|EDN69539.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 88
Score = 63.5 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
M I+++ QFKK K+V K GK++ +L ++ L L R+H L G + G RE H
Sbjct: 1 MKPIRRSTQFKKDYKRVKKSGKNLAELKQVINKLVHDENLEPKYRDHALIGNYAGCRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
+E DWLL Y+ EL L+ TGSH+ +
Sbjct: 61 LEPDWLLIYKTSSCELS--LVRTGSHSALF 88
>gi|82775616|ref|YP_401963.1| hypothetical protein SDY_0251 [Shigella dysenteriae Sd197]
gi|81239764|gb|ABB60474.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 92
Score = 63.2 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHIE 62
I+ + QF K +K K+ KD+NKL ++ LL + LP ++H L+G W+G R+ H+E
Sbjct: 6 IEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVE 65
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
DWLL Y++ D +L TG+HA + G
Sbjct: 66 PDWLLIYKLTDK--LLRFERTGTHAALFG 92
>gi|124526888|ref|ZP_01698770.1| addiction module toxin, RelE/StbE family [Escherichia coli B]
gi|124501582|gb|EAY49045.1| addiction module toxin, RelE/StbE family [Escherichia coli B]
Length = 92
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHIE 62
I+ + QF K +K K+ KD+NKL ++ LL + LP ++H L+G W+G R+ H+E
Sbjct: 6 IEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVE 65
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
DW+L Y++ D +L TG+HA + G
Sbjct: 66 PDWILIYKLTDK--LLRFERTGTHAALFG 92
>gi|74310867|ref|YP_309286.1| hypothetical protein SSON_0267 [Shigella sonnei Ss046]
gi|73854344|gb|AAZ87051.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|157065388|gb|ABV04643.1| conserved hypothetical protein TIGR00053 [Escherichia coli HS]
Length = 92
Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHIE 62
I+ + QF K +K K+ KD+NKL ++ LL + LP ++H L+G W+G R+ H+E
Sbjct: 6 IEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNALPLPAVYKDHPLQGSWKGYRDAHVE 65
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
DW+L Y++ D +L TG+HA + G
Sbjct: 66 PDWILIYKLTDK--LLRFERTGTHAALFG 92
>gi|148983682|ref|ZP_01817001.1| hypothetical protein CGSSp3BS71_06109 [Streptococcus pneumoniae
SP3-BS71]
gi|147923829|gb|EDK74941.1| hypothetical protein CGSSp3BS71_06109 [Streptococcus pneumoniae
SP3-BS71]
Length = 92
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKG--RWRGIRE 58
MLKI+ +QFKK K +K+G L ++ L Q+ E P R+H L ++G+ E
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARYRDHSLTASKHFQGVCE 60
Query: 59 LHIESDWLLAYQVLDDELVLLLIDTGSHAQML 90
H + DWLL Y+V EL+L L+ TGSH+ +
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>gi|15829506|ref|NP_308279.1| hypothetical protein ECs0252 [Escherichia coli O157:H7 str.
Sakai]
gi|13359709|dbj|BAB33675.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
Length = 86
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 9 QFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHIESDWLL 67
QF K +K K+ KD+NKL ++ LL + LP ++H L+G W+G R+ H+E DW+L
Sbjct: 5 QFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWIL 64
Query: 68 AYQVLDDELVLLLIDTGSHAQMLG 91
Y++ D +L TG+HA + G
Sbjct: 65 IYKLTDK--LLRFERTGTHAALFG 86
>gi|154490318|ref|ZP_02030579.1| hypothetical protein PARMER_00551 [Parabacteroides merdae ATCC
43184]
gi|154088929|gb|EDN87973.1| hypothetical protein PARMER_00551 [Parabacteroides merdae ATCC
43184]
Length = 92
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 7 TRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIESDWL 66
T++F+K L+ K+G ++ L+ ++E L LP R H+L G + E HI+ DWL
Sbjct: 9 TKRFEKDLEICKKRGLKLSLLYTVIEQLKLNGTLPKQYRAHKLSGNYANYWECHIKGDWL 68
Query: 67 LAYQVLDDELVLLLIDTGSHAQML 90
L ++ DDEL+L+L TG+H+ +
Sbjct: 69 LIWEQNDDELILILTSTGTHSDLF 92
>gi|16128211|ref|NP_414760.1| predicted toxin of the YafQ-DinJ toxin-antitoxin system
[Escherichia coli K12]
gi|89107100|ref|AP_000880.1| predicted toxin of the YafQ-DinJ toxin-antitoxin system
[Escherichia coli W3110]
gi|2495481|sp|Q47149|YAFQ_ECOLI Uncharacterized protein yafQ
gi|984581|dbj|BAA07587.1| YafQ [Escherichia coli W3110]
gi|1786419|gb|AAC73329.1| predicted toxin of the YafQ-DinJ toxin-antitoxin system
[Escherichia coli K12]
gi|4902961|dbj|BAA77895.1| predicted toxin of the YafQ-DinJ toxin-antitoxin system
[Escherichia coli W3110]
Length = 92
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHIE 62
I+ + Q+ K +K K+ KD+NKL ++ LL + LP ++H L+G W+G R+ H+E
Sbjct: 6 IEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVE 65
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
DW+L Y++ D +L TG+HA + G
Sbjct: 66 PDWILIYKLTDK--LLRFERTGTHAALFG 92
>gi|16766804|ref|NP_462419.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
gi|16422076|gb|AAL22378.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
Length = 91
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 3 KIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHI 61
+I+ + QF+K +K+ K+ KD+ KL ++ LL LP ++H L+G + G R+ HI
Sbjct: 5 EIEYSGQFQKDVKRAQKRHKDVGKLKTLMTLLIHHPFPLPAIYKDHPLQGSYSGYRDAHI 64
Query: 62 ESDWLLAYQVLDDELVLLLIDTGSHAQML 90
E DW+L Y++ D+ L TG+HA +
Sbjct: 65 EPDWILIYKITDE--CLRFERTGTHADLF 91
>gi|157077440|gb|ABV17148.1| conserved hypothetical protein TIGR00053 [Escherichia coli
E24377A]
Length = 92
Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 4 IKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKS-ELPLALRNHELKGRWRGIRELHIE 62
I+ + QF K +K K+ KD+NKL ++ LL + LP ++H L+ W+G R+ H+E
Sbjct: 6 IEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNALPLPAVYKDHPLQSSWKGYRDAHVE 65
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
DW+L Y++ D +L TG+HA + G
Sbjct: 66 PDWILIYKLTDK--LLRFERTGTHAALFG 92
>gi|15645510|ref|NP_207685.1| hypothetical protein HP0892 [Helicobacter pylori 26695]
gi|2314030|gb|AAD07941.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 90
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML I+ +++F K LK +VK G D+ L+ +V L + L ++H LKG + RE H
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
++ D LL YQ+ E L L+ GSH+++
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>gi|15611898|ref|NP_223549.1| hypothetical protein jhp0831 [Helicobacter pylori J99]
gi|4155402|gb|AAD06411.1| putative [Helicobacter pylori J99]
Length = 90
Score = 58.9 bits (141), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML I+ +++F K LK +VK G D+ L+ +V L + L ++H LKG + RE H
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLEPKYKDHPLKGALKDFRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
++ D LL YQ+ E L L+ GSH+++
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>gi|10955844|ref|NP_053145.1| ORF10 [Yersinia pestis]
gi|6175622|gb|AAF05106.1|AF152923_10 ORF10 [Yersinia pestis]
Length = 92
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 5/90 (5%)
Query: 3 KIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLA--LRNHELKGRWRGIRELH 60
+I+ + QF+K +KK K+ KD++KL ++ LL +LPL+ ++H L+G ++G R+ H
Sbjct: 6 EIEYSGQFQKDVKKAQKRHKDMSKLKTLMTLLIN-DDLPLSSVYKDHPLQGNFKGYRDAH 64
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
IE DWLL Y++ D+ +L TG+HA +
Sbjct: 65 IEPDWLLIYKITDE--LLRFERTGTHADLF 92
>gi|148360242|ref|YP_001251449.1| hypothetical protein LPC_2177 [Legionella pneumophila str. Corby]
gi|148282015|gb|ABQ56103.1| hypothetical protein LPC_2177 [Legionella pneumophila str. Corby]
Length = 93
Score = 58.2 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVK--QGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRE 58
ML+I ++ QFKK LKK++K QGKD+ L IV L +LPL +H L G WRG RE
Sbjct: 1 MLEIVRSSQFKKDLKKIIKLKQGKDLELLEEIVNKLQHSEKLPLKNCDHLLSGDWRGFRE 60
Query: 59 LHIESDWLLAYQVLDDELVLLLIDTGSHAQML 90
HI DWLL Y+ ++ +L L+ TGSH+ +
Sbjct: 61 CHISPDWLLIYKNENELKLLRLVRTGSHSDLF 92
>gi|153091014|gb|EDN73019.1| hypothetical protein MHA_0019 [Mannheimia haemolytica PHL213]
Length = 89
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLA--LRNHELKGRWRGIRE 58
ML+I T +K+ KK+ + ++ + + C ++LPLA R+H L+G W+G R+
Sbjct: 1 MLQISPTNAYKRDFKKIAAELVGSSEYVEV--MYCLINQLPLAEKYRDHPLQGEWQGFRD 58
Query: 59 LHIESDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
HI+ D +L Y V D+ +L L+ GSHA++ G
Sbjct: 59 CHIKPDLVLIYAVEDN--LLRLVRLGSHAELFG 89
>gi|15645512|ref|NP_207687.1| hypothetical protein HP0894 [Helicobacter pylori 26695]
gi|82407565|pdb|1Z8M|A Chain A, Solution Structure Of The Conserved Hypothtical Protein
Hp0894 From Helicobacter Pylori
gi|2314031|gb|AAD07942.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 88
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLK+ + F+K K++ G D + L ++ L +K L ++H LKG+W+ RE H
Sbjct: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I+ D LL Y V DDEL+LL + GSH+++
Sbjct: 61 IKPDVLLVYLVKDDELILLRL--GSHSELF 88
>gi|118475516|ref|YP_891674.1| addiction module toxin, RelE/StbE family [Campylobacter fetus
subsp. fetus 82-40]
gi|28974229|gb|AAO64230.1| hypothetical protein Cf0029 [Campylobacter fetus]
gi|118414742|gb|ABK83162.1| addiction module toxin, RelE/StbE family [Campylobacter fetus
subsp. fetus 82-40]
Length = 90
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 7 TRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIESDWL 66
T +FKKS+KK+ K+ DI + I++ LC+ L L +H L+G +G R+ HI D +
Sbjct: 9 TSKFKKSVKKLNKE--DIKAVIEILDKLCEDEPLDLKYCDHPLQGALKGFRDCHIRPDLV 66
Query: 67 LAYQVLDDELVLLLIDTGSHAQML 90
L Y+ D L+L ID GSHA++
Sbjct: 67 LIYEKRYDMLILKAIDIGSHAKVF 90
>gi|108563298|ref|YP_627614.1| hypothetical protein HPAG1_0873 [Helicobacter pylori HPAG1]
gi|107837071|gb|ABF84940.1| hypothetical protein HPAG1_0873 [Helicobacter pylori HPAG1]
Length = 88
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLK+ + F+K K++ G D + L ++ L +K L ++H LKG+W+ RE H
Sbjct: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLKEVILTLRKKEPLDPQFKDHALKGKWKPFRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I+ D LL Y V DDEL+LL + GSH+++
Sbjct: 61 IKPDILLVYLVKDDELILLRL--GSHSELF 88
>gi|46447546|ref|YP_008911.1| hypothetical protein pc1912 [Candidatus Protochlamydia
amoebophila UWE25]
gi|46401187|emb|CAF24636.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 88
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
MLKI+ T+ K+ LKK Q + +L I+ L +K LP R+H L G W RE H
Sbjct: 1 MLKIELTKSIKRDLKKYKHQKNVLLELQDIIGFLVKKRTLPSKYRDHNLTGNWVAYRECH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
+ +D LL Y++ D +L L G H+++
Sbjct: 61 VRNDILLIYKIEDS--ILFLTRFGFHSELF 88
>gi|42519166|ref|NP_965096.1| hypothetical protein LJ1241 [Lactobacillus johnsonii NCC 533]
gi|41583453|gb|AAS09062.1| hypothetical protein LJ_1241 [Lactobacillus johnsonii NCC 533]
Length = 101
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 9/95 (9%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALR--NHELKGRWRGIRE 58
M KI T QFK+ KK+ ++ D NKL ++ LL ++ LA + +H+LKG ++ +R
Sbjct: 1 MAKINFTPQFKRDYKKLKRKHYDTNKLKHVINLLVEEKFEILAQKYDDHQLKGSFKSMRA 60
Query: 59 LHIE----SDWLLAYQVLDDELVLLLID---TGSH 86
LH+E +W+L Y++ +L LL ID TGSH
Sbjct: 61 LHVEHNKAGNWVLVYKIHKGQLELLTIDLISTGSH 95
>gi|17934842|ref|NP_531632.1| hypothetical protein Atu0934 [Agrobacterium tumefaciens str. C58]
gi|17739316|gb|AAL41948.1| conserved hypothetical protein [Agrobacterium tumefaciens str.
C58]
Length = 99
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 7 TRQFKKSLKKVVKQGK-DINKLFAIVELL-CQKSELPLALRNHELKGRWRGIRELHIESD 64
T+QF K +++ G+ D+ +L I+ LL + LP R+HEL G WR RE H+ D
Sbjct: 13 TKQFIKDWQRLNNSGRYDMVRLKEIMLLLIANGAPLPTQFRDHELTGDWRDHRECHVGGD 72
Query: 65 WLLAYQVLDDELVLLLIDTGSHAQML 90
+LL Y V + + +L+ G+HA++
Sbjct: 73 FLLIYTVDEKQNLLIFTRAGTHAELF 98
>gi|15888273|ref|NP_353954.1| hypothetical protein AGR_C_1701 [Agrobacterium tumefaciens str.
C58]
gi|15155933|gb|AAK86739.1| AGR_C_1701p [Agrobacterium tumefaciens str. C58]
Length = 111
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 7 TRQFKKSLKKVVKQGK-DINKLFAIVELL-CQKSELPLALRNHELKGRWRGIRELHIESD 64
T+QF K +++ G+ D+ +L I+ LL + LP R+HEL G WR RE H+ D
Sbjct: 25 TKQFIKDWQRLNNSGRYDMVRLKEIMLLLIANGAPLPTQFRDHELTGDWRDHRECHVGGD 84
Query: 65 WLLAYQVLDDELVLLLIDTGSHAQML 90
+LL Y V + + +L+ G+HA++
Sbjct: 85 FLLIYTVDEKQNLLIFTRAGTHAELF 110
>gi|118496979|ref|YP_898029.1| hypothetical protein FTN_0370 [Francisella tularensis subsp.
novicida U112]
gi|118422885|gb|ABK89275.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida U112]
Length = 92
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 26 KLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIESDWLLAYQVLDDELVLLLIDTGS 85
+L +++LL + +P ++HELKG +GIRELH+ D LL Y ++DD+ +L L D G+
Sbjct: 26 ELAIVIDLLVTRKPIPSKYKDHELKGNKKGIRELHLAFDDLLLYIIIDDDNLLKLYDIGT 85
Query: 86 HAQMLGM 92
H+ L +
Sbjct: 86 HSTTLNI 92
>gi|67154076|ref|ZP_00415821.1| Conserved hypothetical protein 53 [Azotobacter vinelandii AvOP]
gi|67088209|gb|EAM07675.1| Conserved hypothetical protein 53 [Azotobacter vinelandii AvOP]
Length = 216
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 19 KQGKDINKLFA-IVELLCQKSELPLALRNHELKGRWRGIRELHIESDWLLAYQVLDDELV 77
+ G++++ L A I++LL LP R+H L G W R+ HI+SD +L Y+ DDE
Sbjct: 144 RHGEELSTLLASILDLLVIDKPLPAKYRDHSLSGNWADHRDCHIKSDLVLLYRKPDDE-A 202
Query: 78 LLLIDTGSHAQM 89
L L+ GSH+++
Sbjct: 203 LQLVRLGSHSEL 214
>gi|6685132|gb|AAF23803.1|AF213822_18 hypothetical protein [Zymomonas mobilis]
Length = 89
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFA-IVELLCQKSELPLALRNHELKGRWRGIREL 59
M K+ RQFKK KK + + +A I+ LCQ ELP ++H L G W G R+
Sbjct: 1 MRKVLLERQFKKDAKKNFLEF--VTPAWAEILNCLCQDVELPPKYKDHALSGNWLGFRDC 58
Query: 60 HIESDWLLAYQVLDDELVLLLIDTGSHAQMLG 91
H++ D +L Y D+ V L+ GSH+++ G
Sbjct: 59 HVKPDLVLIYMKNGDDYV-QLVRLGSHSELFG 89
>gi|152993696|ref|YP_001359417.1| hypothetical protein SUN_2120 [Sulfurovum sp. NBC37-1]
gi|151425557|dbj|BAF73060.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 89
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 1 MLKIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELH 60
ML I + F K +KK + KLF + LL ELP ++H+L G ++ RE H
Sbjct: 1 MLDIAIHKTFTKDVKKAKLNPTNSAKLFMYISLLLNGEELPSQSKDHDLTGTYQDTREFH 60
Query: 61 IESDWLLAYQVLDDELVLLLIDTGSHAQML 90
I D L+ Y++ ++ L LL + G+H+Q+
Sbjct: 61 ISGDLLVVYRIEENTLELLRL--GTHSQLF 88
>gi|57505073|ref|ZP_00371021.1| Domain of unknown function (DUF332) superfamily [Campylobacter
coli RM2228]
gi|57019158|gb|EAL55870.1| Domain of unknown function (DUF332) superfamily [Campylobacter
coli RM2228]
Length = 96
Score = 52.4 bits (124), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 3 KIKQTRQFKKSLKKVVKQGKDINKLFAIVELLCQKSELPLALRNHELKGRWRGIRELHIE 62
+I+ +++KK+ KK+ + KD+ + IV L L ++H+LKG ++ +RE H++
Sbjct: 11 EIRVLKEYKKNYKKLTLKEKDL--VDEIVYRLSNNETLERKYKDHKLKGEFKELRECHVK 68
Query: 63 SDWLLAYQVLDDELVLLLIDTGSHAQML 90
D LL YQ DD+L+L I+ GSH+++
Sbjct: 69 PDLLLIYQKQDDKLILTCINIGSHSELF 96
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.323 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,355,092
Number of Sequences: 5470121
Number of extensions: 10450986
Number of successful extensions: 26083
Number of sequences better than 1.0e-05: 70
Number of HSP's better than 0.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 26024
Number of HSP's gapped (non-prelim): 70
length of query: 92
length of database: 1,894,087,724
effective HSP length: 62
effective length of query: 30
effective length of database: 1,554,940,222
effective search space: 46648206660
effective search space used: 46648206660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)