BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE2252
(65 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42527754|ref|NP_972852.1| hypothetical protein TDE2252 [... 114 1e-24
gi|15081507|ref|NP_150020.1| hypothetical protein PCP27 [Cl... 84 3e-15
gi|78043385|ref|YP_361290.1| hypothetical protein CHY_2496 ... 80 5e-14
gi|13471995|ref|NP_103562.1| hypothetical protein msr2149 [... 77 2e-13
gi|16127414|ref|NP_421978.1| hypothetical protein CC_3184 [... 75 1e-12
gi|15965792|ref|NP_386145.1| hypothetical protein SMc04441 ... 74 2e-12
gi|152987727|ref|YP_001350414.1| hypothetical protein PSPA7... 74 3e-12
gi|120603809|ref|YP_968209.1| YcfA family protein [Desulfov... 74 4e-12
gi|92116187|ref|YP_575916.1| YcfA-like [Nitrobacter hamburg... 72 8e-12
gi|146297110|ref|YP_001180881.1| YcfA family protein [Caldi... 70 4e-11
gi|59801956|ref|YP_208668.1| hypothetical protein, putative... 69 9e-11
gi|85716560|ref|ZP_01047530.1| hypothetical protein NB311A_... 67 3e-10
gi|83593074|ref|YP_426826.1| hypothetical protein Rru_A1739... 66 6e-10
gi|126642065|ref|YP_001085049.1| hypothetical protein A1S_2... 64 2e-09
gi|53721428|ref|YP_110413.1| hypothetical protein BPSS0390 ... 64 2e-09
gi|91785641|ref|YP_560847.1| hypothetical protein Bxe_A0136... 64 3e-09
gi|54292941|ref|YP_122328.1| hypothetical protein plpl0035 ... 64 3e-09
gi|153955893|ref|YP_001396658.1| hypothetical protein CKL_3... 63 4e-09
gi|33596693|ref|NP_884336.1| hypothetical protein BPP2078 [... 63 5e-09
gi|42527344|ref|NP_972442.1| hypothetical protein TDE1838 [... 62 8e-09
gi|146295156|ref|YP_001178927.1| YcfA family protein [Caldi... 61 3e-08
gi|86749647|ref|YP_486143.1| YcfA-like [Rhodopseudomonas pa... 58 1e-07
gi|104784140|ref|YP_610638.1| hypothetical protein PSEEN523... 58 2e-07
gi|28868840|ref|NP_791459.1| hypothetical protein PSPTO_163... 57 3e-07
gi|67921633|ref|ZP_00515151.1| conserved hypothetical prote... 56 5e-07
gi|147677271|ref|YP_001211486.1| predicted periplasmic or s... 55 9e-07
gi|121605538|ref|YP_982867.1| YcfA family protein [Polaromo... 55 9e-07
gi|20090978|ref|NP_617053.1| hypothetical protein MA2135 [M... 55 2e-06
gi|156742835|ref|YP_001432964.1| YcfA family protein [Rosei... 54 2e-06
gi|16122070|ref|NP_405383.1| hypothetical protein YPO1818 [... 53 4e-06
gi|17230206|ref|NP_486754.1| hypothetical protein asl2714 [... 53 6e-06
gi|19289355|ref|NP_597845.1| Hypothetical protein HP2p13 [H... 53 7e-06
gi|153868027|ref|ZP_01998160.1| conserved hypothetical prot... 52 7e-06
gi|118066102|ref|ZP_01534362.1| YcfA-like [Serratia proteam... 52 7e-06
>gi|42527754|ref|NP_972852.1| hypothetical protein TDE2252 [Treponema denticola ATCC 35405]
gi|41818582|gb|AAS12771.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
Length = 65
Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS
Sbjct: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
Query: 61 GIRFK 65
GIRFK
Sbjct: 61 GIRFK 65
>gi|15081507|ref|NP_150020.1| hypothetical protein PCP27 [Clostridium perfringens str. 13]
gi|60677332|ref|YP_209690.1| hypothetical protein PBCN32 [Clostridium perfringens]
gi|15076740|dbj|BAB62465.1| hypothetical protein [Clostridium perfringens str. 13]
gi|60417967|dbj|BAD90634.1| hypothetical protein PCP27 homolog [Clostridium perfringens]
Length = 65
Score = 83.6 bits (205), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
MKSY+SRE++KI+ DGWYEV VG HHQ+KH KKGR+T+ HP KD+PI T+++I KQ+
Sbjct: 1 MKSYSSREIVKIITKDGWYEVNCVGDHHQYKHPTKKGRLTIPHPKKDLPIGTVRSIFKQA 60
Query: 61 GIR 63
GI+
Sbjct: 61 GIK 63
>gi|78043385|ref|YP_361290.1| hypothetical protein CHY_2496 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995500|gb|ABB14399.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 65
Score = 79.7 bits (195), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
MK+Y+SRE+I+IL+NDGW+ V G HHQFKH +KKG+VTV HP K+IPI T+K+I KQ+
Sbjct: 1 MKAYSSREIIEILKNDGWFLYEVRGDHHQFKHPVKKGKVTVPHPKKNIPIKTVKSILKQA 60
Query: 61 GIRFK 65
GI +
Sbjct: 61 GIEIE 65
>gi|13471995|ref|NP_103562.1| hypothetical protein msr2149 [Mesorhizobium loti MAFF303099]
gi|14022740|dbj|BAB49348.1| msr2149 [Mesorhizobium loti MAFF303099]
Length = 62
Score = 77.4 bits (189), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/60 (63%), Positives = 48/60 (80%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRFK 65
S E+I+ LQ DGW+EVA GSH QFKH K+GRVTV HP +DIPI TL++IEKQSG++ +
Sbjct: 3 SAEIIRQLQADGWFEVARKGSHAQFKHRDKQGRVTVPHPKRDIPIGTLRSIEKQSGLKLR 62
>gi|16127414|ref|NP_421978.1| hypothetical protein CC_3184 [Caulobacter crescentus CB15]
gi|13424858|gb|AAK25146.1| conserved hypothetical protein [Caulobacter crescentus CB15]
Length = 62
Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRFK 65
SREVI L+ DGW EVA GSH QFKH K GRVTV HP +D+P+ TL++IE+Q+ ++ +
Sbjct: 3 SREVIAALEADGWVEVARRGSHAQFKHPTKSGRVTVPHPKRDLPLGTLRSIERQADLKLR 62
>gi|15965792|ref|NP_386145.1| hypothetical protein SMc04441 [Sinorhizobium meliloti 1021]
gi|15075061|emb|CAC46618.1| HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 62
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRFK 65
S ++I LQ DGWYEVA GSH QFKH K GRVTV HP +D+PI TL++IEKQSG++ +
Sbjct: 3 SGDIIAALQKDGWYEVATKGSHVQFKHPKKHGRVTVPHPKRDLPIGTLRSIEKQSGLKLR 62
>gi|152987727|ref|YP_001350414.1| hypothetical protein PSPA7_5078 [Pseudomonas aeruginosa PA7]
gi|150962885|gb|ABR84910.1| conserved domain protein [Pseudomonas aeruginosa PA7]
Length = 73
Score = 73.9 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
SREVI +L DGWYEVAV GSHHQFKH K G+VTV+HP IP TL I KQ+G++
Sbjct: 16 SREVIDLLLEDGWYEVAVKGSHHQFKHPSKPGKVTVQHPSSTIPKGTLNNILKQAGLK 73
>gi|120603809|ref|YP_968209.1| YcfA family protein [Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120564038|gb|ABM29782.1| YcfA family protein [Desulfovibrio vulgaris subsp. vulgaris DP4]
Length = 68
Score = 73.6 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 5 TSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRF 64
+S +VIKIL+ GWY + +VG HHQFKH + G+VT+ HP KD+ I TLK IEKQSGI+
Sbjct: 8 SSADVIKILKAFGWYLLKIVGDHHQFKHPTRPGKVTIPHPKKDLAIGTLKAIEKQSGIKL 67
Query: 65 K 65
+
Sbjct: 68 R 68
>gi|92116187|ref|YP_575916.1| YcfA-like [Nitrobacter hamburgensis X14]
gi|91799081|gb|ABE61456.1| YcfA-like [Nitrobacter hamburgensis X14]
Length = 84
Score = 72.4 bits (176), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRFK 65
SR++I L+ DGW +VA GSH QFKH K GRVTV P KD+PI TL++IEKQ+ ++ +
Sbjct: 16 SRDIIAALKADGWKQVAQKGSHVQFKHPTKPGRVTVPDPKKDLPIGTLRSIEKQAELKLR 75
>gi|146297110|ref|YP_001180881.1| YcfA family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410686|gb|ABP67690.1| YcfA family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 69
Score = 70.1 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
MK+Y+SRE+IKIL DGWY AV G H+QFKH KKG+VTV H K++P T+K+I Q+
Sbjct: 1 MKAYSSREIIKILTADGWYLEAVRGDHYQFKHPSKKGKVTVPHLKKNLPKRTIKSILSQA 60
Query: 61 GIRFK 65
GI+ +
Sbjct: 61 GIKIE 65
>gi|59801956|ref|YP_208668.1| hypothetical protein, putative phage associated protein
[Neisseria gonorrhoeae FA 1090]
gi|59718851|gb|AAW90256.1| hypothetical protein, putative phage associated protein
[Neisseria gonorrhoeae FA 1090]
Length = 60
Score = 68.9 bits (167), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
S +VI +L+ DGWY+VA GSH Q+KH KKGRVTV HP KD+P T+K I KQ+G++
Sbjct: 3 SLDVIALLKQDGWYKVAQSGSHSQYKHPTKKGRVTVPHPKKDLPTGTVKNIYKQAGLK 60
>gi|85716560|ref|ZP_01047530.1| hypothetical protein NB311A_11927 [Nitrobacter sp. Nb-311A]
gi|85696561|gb|EAQ34449.1| hypothetical protein NB311A_11927 [Nitrobacter sp. Nb-311A]
Length = 62
Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRF 64
S E+I L+ DGW +VA GSH QFKH K GRVTV HP KDIP+ TLK+IEKQ+ I+
Sbjct: 3 STEIIAALKKDGWEQVARKGSHVQFKHPTKPGRVTVPHPKKDIPLGTLKSIEKQARIKL 61
>gi|83593074|ref|YP_426826.1| hypothetical protein Rru_A1739 [Rhodospirillum rubrum ATCC 11170]
gi|83575988|gb|ABC22539.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length = 64
Score = 66.2 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRFK 65
SREV+K L+ DGW V GSH Q KH IK+GRVTV HP+KD+ TL++IEKQSG+ +
Sbjct: 3 SREVVKRLKADGWRVVDQPGSHLQLKHPIKRGRVTVPHPEKDLKPGTLRSIEKQSGVSMR 62
>gi|126642065|ref|YP_001085049.1| hypothetical protein A1S_2020 [Acinetobacter baumannii ATCC
17978]
gi|126387949|gb|ABO12447.1| hypothetical protein A1S_2020 [Acinetobacter baumannii ATCC
17978]
Length = 52
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 12 ILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
+++ DGWYEV V GSHH FKH KKG VT+ HP KD+P T+K+I KQ+G+
Sbjct: 1 MIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGL 51
>gi|53721428|ref|YP_110413.1| hypothetical protein BPSS0390 [Burkholderia pseudomallei K96243]
gi|83718197|ref|YP_440193.1| hypothetical protein BTH_II1999 [Burkholderia thailandensis E264]
gi|52211842|emb|CAH37841.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|83652022|gb|ABC36086.1| conserved hypothetical protein [Burkholderia thailandensis E264]
Length = 59
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
S ++I++L+ DGW V V GSHH FKH K G VTV HP KD+PI T+K+I+K +G+
Sbjct: 3 SSKLIRMLEEDGWRLVRVTGSHHHFKHPKKPGLVTVPHPKKDLPIGTVKSIQKSAGL 59
>gi|91785641|ref|YP_560847.1| hypothetical protein Bxe_A0136 [Burkholderia xenovorans LB400]
gi|91689595|gb|ABE32795.1| hypothetical protein Bxe_A0136 [Burkholderia xenovorans LB400]
Length = 60
Score = 63.9 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
S EV+K++Q GW + + GSHH F+H+ + G VT+ HP+KD+P TL +I KQ+G++
Sbjct: 3 SAEVMKLIQAAGWRLIRISGSHHHFRHAARAGLVTIPHPNKDLPPGTLNSILKQAGLK 60
>gi|54292941|ref|YP_122328.1| hypothetical protein plpl0035 [Legionella pneumophila str. Lens]
gi|53755849|emb|CAH17354.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 65
Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 42/57 (73%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
S E+IKI++ DGW + GSH QFKH KKGRVTV HP KD+PI T+ +I KQ+GI
Sbjct: 3 SAEIIKIIERDGWVQCHQKGSHCQFKHPTKKGRVTVPHPKKDLPIKTVASIFKQAGI 59
>gi|153955893|ref|YP_001396658.1| hypothetical protein CKL_3284 [Clostridium kluyveri DSM 555]
gi|146348751|gb|EDK35287.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 63
Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
MKSY+SREVIKIL++ GWY VVG HHQ+ K TV+HP KD+ I +K+IEKQ+
Sbjct: 1 MKSYSSREVIKILESHGWYLKRVVGDHHQYTDGHKLA--TVRHPVKDLGIKNIKSIEKQT 58
Query: 61 GIRF 64
GI+F
Sbjct: 59 GIKF 62
>gi|33596693|ref|NP_884336.1| hypothetical protein BPP2078 [Bordetella parapertussis 12822]
gi|33573394|emb|CAE37378.1| Conserved hypothetical protein [Bordetella parapertussis]
Length = 60
Score = 63.2 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
S ++I+ + DGWY V VGSHHQ+KH K G+VTV HP K +P AT ++I KQ+G+R
Sbjct: 3 STDLIQQPKADGWYRVHTVGSHHQYKHPTKPGKVTVPHPRKGLPTATQRSILKQAGLR 60
>gi|42527344|ref|NP_972442.1| hypothetical protein TDE1838 [Treponema denticola ATCC 35405]
gi|41817929|gb|AAS12353.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
Length = 65
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 5 TSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
T++E+ KIL+ DGWY V GSH+Q+KH++K G+VTV + DIPI T+K I KQ+G++
Sbjct: 7 TAKEIEKILKADGWYFVTAKGSHNQYKHTVKSGKVTVPNHKGDIPIGTVKAILKQAGLK 65
>gi|146295156|ref|YP_001178927.1| YcfA family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145408732|gb|ABP65736.1| YcfA family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 60
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 7 REVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
+E+IKIL+ DGWYEV GSH QF+H +KKG VTV + +KD+ TL +I KQ+G++
Sbjct: 4 KELIKILEEDGWYEVRQKGSHKQFRHPVKKGLVTVPYHNKDLDPKTLNSILKQAGLK 60
>gi|86749647|ref|YP_486143.1| YcfA-like [Rhodopseudomonas palustris HaA2]
gi|86572675|gb|ABD07232.1| YcfA-like [Rhodopseudomonas palustris HaA2]
Length = 65
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
SR++IK L+ DGW V GSHH FKH +K G+VTV HP KD+ ++++ +Q+G++
Sbjct: 5 SRDLIKELEADGWRFVGATGSHHHFKHPVKAGKVTVPHPKKDLHPKIVRSVTRQAGLK 62
>gi|104784140|ref|YP_610638.1| hypothetical protein PSEEN5230 [Pseudomonas entomophila L48]
gi|95113127|emb|CAK17855.1| conserved hypothetical protein [Pseudomonas]
Length = 63
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIRF 64
SRE+I +++ DGWY V GSHH FKH K G VT+ HP KD+ AT +I +Q+ I +
Sbjct: 3 SREMIAVIEADGWYLVRSKGSHHHFKHPHKTGLVTIPHPKKDLLPATAASILRQARIGY 61
>gi|28868840|ref|NP_791459.1| hypothetical protein PSPTO_1634 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28852079|gb|AAO55154.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 60
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
SR+++K L+ DGW V GSHH FKH K V V HP KD+P+ T+K I K +G+
Sbjct: 3 SRQLVKELEADGWVLDRVTGSHHMFKHPEKSQTVPVPHPKKDLPLGTVKAIRKLAGL 59
>gi|67921633|ref|ZP_00515151.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
gi|67856745|gb|EAM51986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
Length = 65
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 7 REVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDK---DIPIATLKTIEKQS 60
REVIK+++NDGWY V GSH QFKH K G VT+ P K DI I TLK I KQ+
Sbjct: 4 REVIKLIENDGWYLVRTRGSHRQFKHPSKSGLVTI--PGKLSDDIAIGTLKNILKQA 58
>gi|147677271|ref|YP_001211486.1| predicted periplasmic or secreted lipoprotein [Pelotomaculum
thermopropionicum SI]
gi|146273368|dbj|BAF59117.1| predicted periplasmic or secreted lipoprotein [Pelotomaculum
thermopropionicum SI]
Length = 69
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 1 MKSYTSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQS 60
+K+Y+S E+++IL+ +GW GSH Q H +K G+VTV HP KD+ T+++I KQ+
Sbjct: 4 VKTYSSTEILRILKKNGWTIKNQEGSHAQLTHPVKSGKVTVPHPRKDLDPKTVRSIFKQA 63
Query: 61 GIRFK 65
GI K
Sbjct: 64 GILMK 68
>gi|121605538|ref|YP_982867.1| YcfA family protein [Polaromonas naphthalenivorans CJ2]
gi|120594507|gb|ABM37946.1| YcfA family protein [Polaromonas naphthalenivorans CJ2]
Length = 67
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 5 TSREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
TS E+I+ +Q GW V GSHH FKH + G V V HP KD+ + +K I +Q+GI
Sbjct: 10 TSAELIRDMQRAGWRLDRVNGSHHVFKHPSRPGHVVVPHPKKDLGLGLVKAIRRQAGI 67
>gi|20090978|ref|NP_617053.1| hypothetical protein MA2135 [Methanosarcina acetivorans C2A]
gi|19916064|gb|AAM05533.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 64
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 7 REVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVK-HPDKDIPIATLKTIEKQSGIRFK 65
REVIK L+ DGWY VA GSH Q+KH K GRVT+ H D+ TL +I KQ+ ++ +
Sbjct: 4 REVIKHLEADGWYLVATKGSHRQYKHPAKPGRVTIAGHSGDDLAPGTLNSILKQAQLKIE 63
>gi|156742835|ref|YP_001432964.1| YcfA family protein [Roseiflexus castenholzii DSM 13941]
gi|156234163|gb|ABU58946.1| YcfA family protein [Roseiflexus castenholzii DSM 13941]
Length = 54
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 18 WYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSG 61
W V V GSHH +KH K GRVT+ HP KD+P+ TLK+I +Q+G
Sbjct: 4 WMLVHVRGSHHHYKHPNKPGRVTIPHPKKDLPVGTLKSIYRQAG 47
>gi|16122070|ref|NP_405383.1| hypothetical protein YPO1818 [Yersinia pestis CO92]
gi|22126372|ref|NP_669795.1| hypothetical protein y2489 [Yersinia pestis KIM]
gi|45441393|ref|NP_992932.1| hypothetical protein YP_1575 [Yersinia pestis biovar Microtus str.
91001]
gi|108807189|ref|YP_651105.1| hypothetical protein YPA_1193 [Yersinia pestis Antiqua]
gi|108812467|ref|YP_648234.1| hypothetical protein YPN_2306 [Yersinia pestis Nepal516]
gi|149366235|ref|ZP_01888270.1| hypothetical protein YPE_1444 [Yersinia pestis CA88-4125]
gi|21959357|gb|AAM86046.1|AE013852_8 hypothetical [Yersinia pestis KIM]
gi|45436253|gb|AAS61809.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
str. 91001]
gi|108776115|gb|ABG18634.1| hypothetical protein YPN_2306 [Yersinia pestis Nepal516]
gi|108779102|gb|ABG13160.1| hypothetical protein YPA_1193 [Yersinia pestis Antiqua]
gi|115347549|emb|CAL20458.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|149292648|gb|EDM42722.1| hypothetical protein YPE_1444 [Yersinia pestis CA88-4125]
Length = 122
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
S E+IK+L+ +GW + V GSHHQFKH +TV HP KD+ TL+ I K + +
Sbjct: 65 SSELIKLLETNGWKLMRVKGSHHQFKHPDFAAVITVPHPKKDVKPGTLRQILKDANL 121
>gi|17230206|ref|NP_486754.1| hypothetical protein asl2714 [Nostoc sp. PCC 7120]
gi|17131807|dbj|BAB74413.1| asl2714 [Nostoc sp. PCC 7120]
Length = 63
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8 EVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVK-HPDKDIPIATLKTIEKQS 60
EVIK L+ DGWY GSH QFKH K G VTV P D+PI TLK I +Q+
Sbjct: 5 EVIKRLETDGWYLARTKGSHRQFKHPDKTGTVTVSGKPSVDVPIGTLKNIWRQA 58
>gi|19289355|ref|NP_597845.1| Hypothetical protein HP2p13 [Haemophilus phage HP2]
Length = 72
Score = 52.8 bits (125), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGI 62
S+ IK+++ DGWY V GSHHQ+KH KKG VT+ HP KD+ K+I+KQ+G+
Sbjct: 17 SKTAIKMIEEDGWYLDRVKGSHHQYKHPTKKGTVTIPHPRKDLGHLE-KSIKKQAGL 72
>gi|153868027|ref|ZP_01998160.1| conserved hypothetical protein [Beggiatoa sp. SS]
gi|152144653|gb|EDN71840.1| conserved hypothetical protein [Beggiatoa sp. SS]
Length = 61
Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 8 EVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDK-DIPIATLKTIEKQSGIR 63
EVIK+L+ DGW + GSH QFKH IK G VTV D+P TL +I KQ+G++
Sbjct: 5 EVIKLLKQDGWQLIRTQGSHRQFKHLIKSGCVTVSGKSSVDVPPGTLNSILKQAGLK 61
>gi|118066102|ref|ZP_01534362.1| YcfA-like [Serratia proteamaculans 568]
gi|118019841|gb|EAV33753.1| YcfA-like [Serratia proteamaculans 568]
Length = 60
Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 6 SREVIKILQNDGWYEVAVVGSHHQFKHSIKKGRVTVKHPDKDIPIATLKTIEKQSGIR 63
S E+I +L+ +GW + GSHHQFKH + +TV HP KD+ TL+ I K +G+R
Sbjct: 3 SSELIGLLEQEGWVLERIKGSHHQFKHPGSRLVITVPHPRKDLKPGTLRQIMKDAGLR 60
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,545,682
Number of Sequences: 5470121
Number of extensions: 6741006
Number of successful extensions: 16580
Number of sequences better than 1.0e-05: 52
Number of HSP's better than 0.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 16534
Number of HSP's gapped (non-prelim): 52
length of query: 65
length of database: 1,894,087,724
effective HSP length: 37
effective length of query: 28
effective length of database: 1,691,693,247
effective search space: 47367410916
effective search space used: 47367410916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)