BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE2553
(528 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42528053|ref|NP_973151.1| lysyl-tRNA synthetase [Trepone... 1084 0.0
gi|15639631|ref|NP_219081.1| lysyl-tRNA synthetase [Trepone... 744 0.0
gi|15595004|ref|NP_212793.1| lysyl-tRNA synthetase [Borreli... 529 e-148
gi|111115492|ref|YP_710110.1| lysyl-tRNA synthetase [Borrel... 529 e-148
gi|16304832|emb|CAC95161.1| class 1 lysyl-tRNA synthetase [... 527 e-148
gi|51598914|ref|YP_073102.1| lysyl-tRNA synthetase [Borreli... 526 e-147
gi|16304834|emb|CAC95162.1| class 1 lysyl-tRNA synthetase [... 512 e-143
gi|149917711|ref|ZP_01906207.1| lysyl-tRNA synthetase [Ples... 388 e-106
gi|57642175|ref|YP_184653.1| lysyl-tRNA synthetase [Thermoc... 384 e-105
gi|14520422|ref|NP_125897.1| lysyl-tRNA synthetase [Pyrococ... 372 e-101
gi|14590155|ref|NP_142220.1| lysyl-tRNA synthetase [Pyrococ... 369 e-100
gi|20663866|pdb|1IRX|A Chain A, Crystal Structure Of Class ... 365 3e-99
gi|18976507|ref|NP_577864.1| lysyl-tRNA synthetase [Pyrococ... 361 6e-98
gi|49477784|ref|YP_036701.1| lysine--tRNA ligase (lysyl-tRN... 310 2e-82
gi|118477986|ref|YP_895137.1| lysine--tRNA ligase (lysyl-tR... 310 2e-82
gi|125975297|ref|YP_001039207.1| lysyl-tRNA synthetase [Clo... 307 1e-81
gi|75764295|ref|ZP_00743834.1| Class 1 lysyl-tRNA synthetas... 306 3e-81
gi|47568720|ref|ZP_00239416.1| lysyl-tRNA synthetase [Bacil... 306 3e-81
gi|52142901|ref|YP_083929.1| lysine--tRNA ligase, class I (... 305 6e-81
gi|30020663|ref|NP_832294.1| Class 1 lysyl-tRNA synthetase ... 300 2e-79
gi|28493029|ref|NP_787190.1| lysyl-tRNA synthetase [Tropher... 274 1e-71
gi|124484944|ref|YP_001029560.1| hypothetical protein Mlab_... 267 1e-69
gi|84489076|ref|YP_447308.1| LysS [Methanosphaera stadtmana... 266 3e-69
gi|2128365|pir||C64367 hypothetical protein MJ0539 - Methan... 263 2e-68
gi|15668719|ref|NP_247518.1| tRNA synthetase, putative [Met... 261 6e-68
gi|150399380|ref|YP_001323147.1| lysyl-tRNA synthetase [Met... 256 2e-66
gi|21227798|ref|NP_633720.1| lysyl-tRNA synthetase [Methano... 256 3e-66
gi|24418702|sp|Q8PWA0|SYK1_METMA Lysyl-tRNA synthetase 1 (L... 254 1e-65
gi|2645489|gb|AAB87410.1| lysyl-tRNA synthetase [Methanococ... 253 2e-65
gi|20089423|ref|NP_615498.1| lysyl-tRNA synthetase [Methano... 251 9e-65
gi|73669025|ref|YP_305040.1| lysyl-tRNA synthetase [Methano... 251 1e-64
gi|45358881|ref|NP_988438.1| Lysyl-tRNA synthetase [Methano... 251 1e-64
gi|46397784|sp|O30522|SYK_METMP Lysyl-tRNA synthetase (Lysi... 250 2e-64
gi|134045320|ref|YP_001096806.1| lysyl-tRNA synthetase [Met... 249 2e-64
gi|150402488|ref|YP_001329782.1| lysyl-tRNA synthetase [Met... 249 4e-64
gi|27805747|sp|Q9C4B7|SYK_METBA Lysyl-tRNA synthetase (Lysi... 246 2e-63
gi|15679538|ref|NP_276655.1| hypothetical protein MTH1542 [... 246 3e-63
gi|116754085|ref|YP_843203.1| lysyl-tRNA synthetase [Methan... 243 3e-62
gi|150400653|ref|YP_001324419.1| lysyl-tRNA synthetase [Met... 241 6e-62
gi|29831292|ref|NP_825926.1| lysyl-tRNA synthetase [Strepto... 241 8e-62
gi|7480963|pir||T36123 probable lysyl-tRNA synthetase - Str... 240 2e-61
gi|32141198|ref|NP_733599.1| lysyl-tRNA synthetase [Strepto... 240 2e-61
gi|148643447|ref|YP_001273960.1| lysyl-tRNA synthetase (cla... 239 5e-61
gi|48477538|ref|YP_023244.1| lysyl-tRNA synthetase [Picroph... 234 1e-59
gi|20094422|ref|NP_614269.1| Lysyl-tRNA synthetase (class I... 228 9e-58
gi|16082175|ref|NP_394619.1| lysyl-tRNA synthetase [Thermop... 227 1e-57
gi|13542050|ref|NP_111738.1| lysyl-tRNA synthetase [Thermop... 226 4e-57
gi|11498815|ref|NP_070044.1| lysyl-tRNA synthetase [Archaeo... 225 5e-57
gi|52549821|gb|AAU83670.1| Lysyl-tRNA synthetase [unculture... 219 5e-55
gi|126008332|ref|ZP_01708905.1| hypothetical protein Faci_0... 214 1e-53
gi|91773806|ref|YP_566498.1| lysyl-tRNA synthetase [Methano... 214 1e-53
gi|156937259|ref|YP_001435055.1| lysyl-tRNA synthetase [Ign... 196 3e-48
gi|108804999|ref|YP_644936.1| lysyl-tRNA synthetase [Rubrob... 186 5e-45
gi|77165098|ref|YP_343623.1| Lysine--tRNA ligase [Nitrosoco... 174 1e-41
gi|55379735|ref|YP_137585.1| lysyl-tRNA synthetase [Haloarc... 169 5e-40
gi|126465019|ref|YP_001040128.1| lysyl-tRNA synthetase [Sta... 169 5e-40
gi|41614885|ref|NP_963383.1| hypothetical protein NEQ087 [N... 167 1e-39
gi|15790879|ref|NP_280703.1| LysS [Halobacterium sp. NRC-1]... 167 2e-39
gi|76801778|ref|YP_326786.1| lysine--tRNA ligase [Natronomo... 165 8e-39
gi|153894179|ref|ZP_02014763.1| lysyl-tRNA synthetase [Halo... 164 1e-38
gi|111221235|ref|YP_712029.1| Lysyl-tRNA synthetase (Lysine... 163 3e-38
gi|110667072|ref|YP_656883.1| lysine--tRNA ligase [Haloquad... 158 9e-37
gi|119719696|ref|YP_920191.1| lysyl-tRNA synthetase [Thermo... 154 2e-35
gi|147920461|ref|YP_685748.1| lysyl-tRNA synthetase (lysine... 153 3e-35
gi|77025004|gb|ABA61430.1| lysyl-tRNA synthetase [unculture... 149 6e-34
gi|34580573|ref|ZP_00142053.1| lysyl-tRNA synthetase [Ricke... 145 9e-33
gi|42453642|ref|ZP_00153549.1| COG1384: Lysyl-tRNA syntheta... 144 2e-32
gi|109728307|ref|ZP_01379718.1| hypothetical protein RbelO_... 144 2e-32
gi|91205686|ref|YP_538041.1| Lysyl-tRNA synthetase [Rickett... 143 4e-32
gi|67458974|ref|YP_246598.1| lysyl-tRNA synthetase [Rickett... 141 9e-32
gi|52698806|ref|ZP_00340214.1| COG1384: Lysyl-tRNA syntheta... 140 2e-31
gi|69938833|ref|ZP_00633206.1| Lysyl-tRNA synthetase (archa... 139 4e-31
gi|126302605|sp|Q92IB5|SYK_RICCN Lysyl-tRNA synthetase (Lys... 139 5e-31
gi|15892428|ref|NP_360142.1| lysyl-tRNA synthetase [Rickett... 139 6e-31
gi|154250888|ref|YP_001411712.1| lysyl-tRNA synthetase [Par... 138 1e-30
gi|15604238|ref|NP_220754.1| lysyl-tRNA synthetase [Rickett... 138 1e-30
gi|154242836|ref|ZP_02024397.1| lysyl-tRNA synthetase [Cand... 137 2e-30
gi|83944398|ref|ZP_00956852.1| lysyl-tRNA synthetase [Sulfi... 135 1e-29
gi|102191919|ref|ZP_01347731.1| hypothetical protein RcanM_... 135 1e-29
gi|126737408|ref|ZP_01753143.1| lysyl-tRNA synthetase [Rose... 134 1e-29
gi|118430912|ref|NP_147012.2| lysyl-tRNA synthetase [Aeropy... 133 3e-29
gi|83953439|ref|ZP_00962161.1| lysyl-tRNA synthetase [Sulfi... 132 5e-29
gi|124026958|ref|YP_001012278.1| Lysyl-tRNA synthetase [Hyp... 131 1e-28
gi|110678572|ref|YP_681579.1| lysyl-tRNA synthetase [Roseob... 130 2e-28
gi|149203133|ref|ZP_01880104.1| lysyl-tRNA synthetase [Rose... 130 2e-28
gi|86139255|ref|ZP_01057825.1| lysyl-tRNA synthetase [Roseo... 130 3e-28
gi|42520695|ref|NP_966610.1| lysyl-tRNA synthetase [Wolbach... 129 6e-28
gi|99082101|ref|YP_614255.1| lysyl-tRNA synthetase [Silicib... 129 6e-28
gi|58698334|ref|ZP_00373250.1| lysyl-tRNA synthetase [Wolba... 127 1e-27
gi|89056108|ref|YP_511559.1| lysyl-tRNA synthetase [Jannasc... 127 1e-27
gi|146276539|ref|YP_001166698.1| lysyl-tRNA synthetase [Rho... 127 3e-27
gi|88608230|ref|YP_506648.1| lysyl-tRNA synthetase [Neorick... 126 3e-27
gi|88607876|ref|YP_505197.1| lysyl-tRNA synthetase [Anaplas... 126 4e-27
gi|114770184|ref|ZP_01447722.1| lysyl-tRNA synthetase [alph... 126 4e-27
gi|84687927|ref|ZP_01015793.1| lysyl-tRNA synthetase [Rhodo... 125 7e-27
gi|84502893|ref|ZP_01001006.1| lysyl-tRNA synthetase [Ocean... 125 7e-27
gi|85706175|ref|ZP_01037270.1| lysyl-tRNA synthetase [Roseo... 124 1e-26
gi|83591842|ref|YP_425594.1| Lysine--tRNA ligase [Rhodospir... 124 1e-26
gi|126727934|ref|ZP_01743760.1| lysyl-tRNA synthetase [Rhod... 123 3e-26
gi|84702738|ref|ZP_01017313.1| lysyl-tRNA synthetase [Parvu... 123 3e-26
gi|89070770|ref|ZP_01158028.1| lysyl-tRNA synthetase [Ocean... 123 3e-26
gi|77464155|ref|YP_353659.1| lysyl-tRNA synthetase [Rhodoba... 123 3e-26
gi|126462998|ref|YP_001044112.1| lysyl-tRNA synthetase [Rho... 123 3e-26
gi|153011291|ref|YP_001372505.1| lysyl-tRNA synthetase [Och... 122 5e-26
gi|83952843|ref|ZP_00961573.1| lysyl-tRNA synthetase [Roseo... 122 5e-26
gi|51473563|ref|YP_067320.1| lysyl-tRNA synthetase [Rickett... 122 7e-26
gi|83859645|ref|ZP_00953165.1| lysyl-tRNA synthetase [Ocean... 122 8e-26
gi|23014539|ref|ZP_00054350.1| COG1384: Lysyl-tRNA syntheta... 121 1e-25
gi|23500524|ref|NP_699964.1| lysyl-tRNA synthetase [Brucell... 121 1e-25
gi|114798391|ref|YP_761748.1| lysyl-tRNA synthetase [Hyphom... 120 2e-25
gi|149186968|ref|ZP_01865276.1| lysyl-tRNA synthetase [Eryt... 120 2e-25
gi|17988845|ref|NP_541478.1| lysyl-tRNA synthetase [Brucell... 120 2e-25
gi|62317374|ref|YP_223227.1| lysyl-tRNA synthetase [Brucell... 120 2e-25
gi|56695370|ref|YP_165718.1| lysyl-tRNA synthetase [Silicib... 119 5e-25
gi|114764466|ref|ZP_01443691.1| lysyl-tRNA synthetase [Rose... 118 8e-25
gi|126731194|ref|ZP_01747002.1| lysyl-tRNA synthetase [Sagi... 118 9e-25
gi|148284063|ref|YP_001248153.1| lysyl-tRNA synthetase [Ori... 117 2e-24
gi|83312710|ref|YP_422974.1| Lysyl-tRNA synthetase [Magneto... 116 3e-24
gi|110632379|ref|YP_672587.1| Lysyl-tRNA synthetase, class ... 115 6e-24
gi|58617160|ref|YP_196359.1| lysyl-tRNA synthetase [Ehrlich... 115 6e-24
gi|56551786|ref|YP_162625.1| lysyl-tRNA synthetase [Zymomon... 115 7e-24
gi|126734894|ref|ZP_01750640.1| lysyl-tRNA synthetase [Rose... 115 9e-24
gi|149915411|ref|ZP_01903938.1| lysyl-tRNA synthetase [Rose... 115 1e-23
gi|84515938|ref|ZP_01003299.1| lysyl-tRNA synthetase [Lokta... 114 1e-23
gi|87200373|ref|YP_497630.1| lysyl-tRNA synthetase [Novosph... 114 1e-23
gi|88657725|ref|YP_507436.1| lysyl-tRNA synthetase [Ehrlich... 114 1e-23
gi|3599397|gb|AAC62702.1| lysyl tRNA synthetase [Cenarchaeu... 114 2e-23
gi|68171747|ref|ZP_00545096.1| Lysine--tRNA ligase [Ehrlich... 114 2e-23
gi|57239152|ref|YP_180288.1| lysyl-tRNA synthetase [Ehrlich... 113 2e-23
gi|94495933|ref|ZP_01302512.1| lysyl-tRNA synthetase [Sphin... 113 3e-23
gi|85708024|ref|ZP_01039090.1| lysyl-tRNA synthetase [Eryth... 113 4e-23
gi|144901004|emb|CAM77868.1| Lysyl-tRNA synthetase [Magneto... 112 4e-23
gi|71082916|ref|YP_265635.1| lysyl-tRNA synthetase [Candida... 112 5e-23
gi|103485956|ref|YP_615517.1| lysyl-tRNA synthetase [Sphing... 112 6e-23
gi|91762661|ref|ZP_01264626.1| lysine-tRNA ligase [Candidat... 112 7e-23
gi|58585056|ref|YP_198629.1| lysyl-tRNA synthetase [Wolbach... 112 7e-23
gi|153900196|ref|ZP_02020758.1| lysyl-tRNA synthetase [Meth... 112 7e-23
gi|148259720|ref|YP_001233847.1| lysyl-tRNA synthetase [Aci... 112 9e-23
gi|114569060|ref|YP_755740.1| lysyl-tRNA synthetase [Marica... 111 1e-22
gi|145559532|sp|O74059|SYK_CENSY Lysyl-tRNA synthetase (Lys... 110 2e-22
gi|73667038|ref|YP_303054.1| lysyl-tRNA synthetase [Ehrlich... 110 2e-22
gi|156449220|ref|ZP_02055603.1| lysyl-tRNA synthetase [Meth... 110 2e-22
gi|85373422|ref|YP_457484.1| lysyl-tRNA synthetase [Erythro... 109 4e-22
gi|148556468|ref|YP_001264050.1| lysyl-tRNA synthetase [Sph... 109 6e-22
gi|54288378|gb|AAV31666.1| predicted lysyl-tRNA synthetase ... 108 1e-21
gi|90422250|ref|YP_530620.1| lysyl-tRNA synthetase [Rhodops... 107 2e-21
gi|51891346|ref|YP_074037.1| lysyl-tRNA synthetase [Symbiob... 107 2e-21
gi|56416823|ref|YP_153897.1| lysyl-tRNA synthetase [Anaplas... 107 2e-21
gi|92115832|ref|YP_575561.1| lysyl-tRNA synthetase [Nitroba... 106 5e-21
gi|49474853|ref|YP_032894.1| lysyl-tRNA synthetase [Bartone... 105 6e-21
gi|148252373|ref|YP_001236958.1| lysyl tRNA synthetase ( Ly... 105 1e-20
gi|58040335|ref|YP_192299.1| lysyl-tRNA synthetase [Glucono... 104 1e-20
gi|115522762|ref|YP_779673.1| lysyl-tRNA synthetase [Rhodop... 104 2e-20
gi|39937743|ref|NP_950019.1| lysyl-tRNA synthetase [Rhodops... 104 2e-20
gi|16124339|ref|NP_418903.1| lysyl-tRNA synthetase [Cauloba... 103 3e-20
gi|154246326|ref|YP_001417284.1| lysyl-tRNA synthetase [Xan... 103 4e-20
gi|118736767|ref|ZP_01585215.1| lysyl-tRNA synthetase [Dino... 102 5e-20
gi|91975480|ref|YP_568139.1| lysyl-tRNA synthetase [Rhodops... 102 5e-20
gi|113933887|ref|ZP_01419788.1| lysyl-tRNA synthetase [Caul... 102 5e-20
gi|27376244|ref|NP_767773.1| lysyl-tRNA synthetase [Bradyrh... 102 9e-20
gi|121602260|ref|YP_989607.1| lysyl-tRNA synthetase [Barton... 100 2e-19
gi|85714008|ref|ZP_01044997.1| lysyl-tRNA synthetase [Nitro... 100 2e-19
gi|114704907|ref|ZP_01437815.1| lysyl-tRNA synthetase [Fulv... 100 2e-19
gi|146343513|ref|YP_001208561.1| lysyl tRNA synthetase ( Ly... 100 2e-19
gi|114328838|ref|YP_745995.1| class 1 lysyl-tRNA synthetase... 100 2e-19
gi|118589335|ref|ZP_01546741.1| lysyl-tRNA synthetase [Stap... 99 6e-19
gi|90418700|ref|ZP_01226611.1| lysyl-tRNA synthetase [Auran... 99 1e-18
gi|49473707|ref|YP_031749.1| lysyl-tRNA synthetase [Bartone... 98 2e-18
gi|149123533|ref|ZP_01849191.1| Lysine--tRNA ligase [Methyl... 97 2e-18
gi|86748014|ref|YP_484510.1| lysyl-tRNA synthetase [Rhodops... 97 3e-18
gi|13474689|ref|NP_106258.1| lysyl-tRNA synthetase [Mesorhi... 95 1e-17
gi|75674350|ref|YP_316771.1| lysyl-tRNA synthetase [Nitroba... 93 5e-17
gi|84519328|ref|ZP_01006669.1| lysyl-tRNA synthetase [Proch... 88 1e-15
gi|37527783|ref|NP_931128.1| hypothetical protein plu3928 [... 88 2e-15
gi|58696696|ref|ZP_00372245.1| lysyl-tRNA synthetase [Wolba... 62 1e-07
>gi|42528053|ref|NP_973151.1| lysyl-tRNA synthetase [Treponema denticola ATCC 35405]
gi|41819098|gb|AAS13070.1| lysyl-tRNA synthetase [Treponema denticola ATCC 35405]
Length = 528
Score = 1084 bits (2804), Expect = 0.0, Method: Composition-based stats.
Identities = 528/528 (100%), Positives = 528/528 (100%)
Query: 1 MSNEKKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS 60
MSNEKKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS
Sbjct: 1 MSNEKKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS 60
Query: 61 RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE
Sbjct: 61 RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
Query: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVS 180
AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVS
Sbjct: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVS 180
Query: 181 VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV
Sbjct: 181 VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE
Sbjct: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKE 360
VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKE
Sbjct: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKE 360
Query: 361 YRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAEC 420
YRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAEC
Sbjct: 361 YRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAEC 420
Query: 421 AWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD 480
AWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD
Sbjct: 421 AWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD 480
Query: 481 AAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
AAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY
Sbjct: 481 AAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
>gi|15639631|ref|NP_219081.1| lysyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
Nichols]
gi|8928369|sp|O83650|SYK_TREPA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|3322943|gb|AAC65618.1| lysyl-tRNA synthetase (lysS-1) [Treponema pallidum subsp. pallidum
str. Nichols]
Length = 528
Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats.
Identities = 334/528 (63%), Positives = 419/528 (79%)
Query: 1 MSNEKKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS 60
MS +K LHWAD+ A KII+ER D D YTCASGITPSGTVH+GNFREIISVDLVVRALR
Sbjct: 1 MSICEKSLHWADKVAHKIIKERADCDQYTCASGITPSGTVHIGNFREIISVDLVVRALRD 60
Query: 61 RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
+GK+VRF++SWDDYDVFR++P N+P + L++Y+R PIT VPD F+++++YARHHE ++E
Sbjct: 61 QGKSVRFVHSWDDYDVFRRIPDNVPAQDELKQYIRMPITSVPDPFQQEDSYARHHEREIE 120
Query: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVS 180
+ LP VGI+PEY+YQ+++YQ G+YA+ +K ALDNR ++ ILN YRDE HKI+ YWPVS
Sbjct: 121 SALPEVGIYPEYVYQSKQYQAGVYAQEIKIALDNRHRIQAILNEYRDEQHKISGTYWPVS 180
Query: 181 VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
VFCTAC+KD T +++WD W L+Y CECGH E +DLR+ +VKL WRVDW MRW+ E V
Sbjct: 181 VFCTACHKDCTTVDAWDSHWCLQYHCECGHGEQVDLRQTSAVKLSWRVDWAMRWSKEHVV 240
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
FEPAGKDHHSQGGSFDTA L+SD IY+WPAPVSFRYDFIGLKG+PGKM+SS GKVV L +
Sbjct: 241 FEPAGKDHHSQGGSFDTARLISDHIYHWPAPVSFRYDFIGLKGLPGKMSSSAGKVVGLRD 300
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKE 360
VLEVYQPEV RYLF TRPNTEF ISFDLDV+KIYEDYDK+ER+AW AK++ F +
Sbjct: 301 VLEVYQPEVLRYLFVSTRPNTEFSISFDLDVLKIYEDYDKSERVAWGIHAAKSEHEFMRH 360
Query: 361 YRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAEC 420
RIYELSQ+ GMP CISYQ+PFRH+CN+LQINSGDI AV+ D+ Q++R R +C
Sbjct: 361 KRIYELSQVRGMPPCISYQVPFRHVCNILQINSGDISAVLAFFSDIHKDQIERFVRRCQC 420
Query: 421 AWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD 480
AWNWI D GAP++FKF L+ DG + LS T+A++ IRD+L+P+ D + EK S LY
Sbjct: 421 AWNWIRDAGAPDDFKFTLKEDGVRVPLSAEITEALRLIRDTLVPRTDVLSEKELSAELYA 480
Query: 481 AAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
A++ + K++F A+YQ L+ K+QGPRLAGFMK IG +RL ++ Y
Sbjct: 481 VARQIPVGSKELFTALYQVLIGKNQGPRLAGFMKVIGTQRLHRMLSVY 528
>gi|15595004|ref|NP_212793.1| lysyl-tRNA synthetase [Borrelia burgdorferi B31]
gi|6226184|sp|O51603|SYK_BORBU Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|2688588|gb|AAC67006.1| lysyl-tRNA synthetase [Borrelia burgdorferi B31]
Length = 521
Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats.
Identities = 273/524 (52%), Positives = 359/524 (68%), Gaps = 6/524 (1%)
Query: 6 KLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
K HWAD AEKI +E+G ++YT ASGITPSGTVH+GNFRE+ISVDLV RALR G V
Sbjct: 2 KTAHWADFYAEKIKKEKGPKNLYTVASGITPSGTVHIGNFREVISVDLVARALRDSGSKV 61
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
RFIYSWD+YDVFRKVP NMP+ E+L YLR IT VPDT +YAR +E + E LP
Sbjct: 62 RFIYSWDNYDVFRKVPKNMPEQELLTTYLRQAITRVPDTRSHKTSYARANEIEFEKYLPV 121
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTA 185
VGI+PE++ Q+++Y YA +K ALD+++EL + LN YR + K+ E ++P+SVFCT
Sbjct: 122 VGINPEFIDQSKQYTSNAYASQIKFALDHKKELSEALNEYR--TSKLEENWYPISVFCTK 179
Query: 186 CNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
CN+DTT + ++D ++++YSCECG+ E+LD+R ++KL WR+DWPMRW +EK FEPAG
Sbjct: 180 CNRDTTTVNNYDNHYSVEYSCECGNQESLDIRTTWAIKLPWRIDWPMRWKYEKVDFEPAG 239
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDHHS GGSFDT+ + +I+ PV+F+YDFI +KG GK++SS G V+SL +VLEVY
Sbjct: 240 KDHHSSGGSFDTSKNIV-KIFQGSPPVTFQYDFISIKGRGGKISSSSGDVISLKDVLEVY 298
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PEV R+LFA T+PNTEF ISFDLDVIKIYEDYDK ERI + E K +E RIYE
Sbjct: 299 TPEVTRFLFAATKPNTEFSISFDLDVIKIYEDYDKFERIYYGVEDVK-EEKKRAFKRIYE 357
Query: 366 LSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNWI 425
LSQ + I YQ+ FRHL + QI +I ++ L +V+ Q D+L + CA NWI
Sbjct: 358 LSQPYMPSKRIPYQVGFRHLSVISQIFENNINKILNYLKNVQEDQKDKLINKINCAINWI 417
Query: 426 TDGGAPEEFKFALRADGSKAE-LSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKE 484
D APE+FKF+LR+ E L E KAI + D L + E+ +Y ++E
Sbjct: 418 RD-FAPEDFKFSLRSKFDNMEILEENSKKAINELLDFLKKNFEVATEQDIQNEIYKISRE 476
Query: 485 CGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
+EP F +Y+ L+ K++GP+LAGF+K IG +R EKI Y
Sbjct: 477 NNIEPALFFKQIYKILIDKEKGPKLAGFIKIIGIDRFEKITSKY 520
>gi|111115492|ref|YP_710110.1| lysyl-tRNA synthetase [Borrelia afzelii PKo]
gi|27805744|sp|Q937W6|SYK_BORAF Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|16304830|emb|CAC95160.1| class 1 lysyl-tRNA synthetase [Borrelia afzelii]
gi|110890766|gb|ABH01934.1| lysyl-tRNA synthetase [Borrelia afzelii PKo]
Length = 521
Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats.
Identities = 270/524 (51%), Positives = 362/524 (69%), Gaps = 6/524 (1%)
Query: 6 KLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
K HWAD AEKI +++G ++YT ASGITPSGTVH+GNFRE+ISVDLV RAL+ G V
Sbjct: 2 KTAHWADFYAEKIKKDKGPKNLYTVASGITPSGTVHIGNFREVISVDLVARALKDSGSKV 61
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
RFIYSWD+YDVFRKVP NMP+ E+L YLR IT VPDT +YAR +E + E LP
Sbjct: 62 RFIYSWDNYDVFRKVPKNMPEQELLTTYLRQAITRVPDTRSHKTSYARANEIEFEKYLPI 121
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTA 185
VGI+PE++ Q+++Y G+YA +K AL++++EL + LN YR + K+ E ++P+S+FCT
Sbjct: 122 VGINPEFIDQSKQYTNGVYASQIKFALNHKKELSNALNEYR--TSKLEENWYPISIFCTK 179
Query: 186 CNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
CN+DTT + ++D ++++YSCECG+ E+LD+R ++KL WR+DWPMRW +E+ FEPAG
Sbjct: 180 CNRDTTTVNNYDNHYSVEYSCECGNQESLDIRTTWAIKLPWRIDWPMRWKYEEVDFEPAG 239
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDHHS GGSFDT+ + +I+ PV+F+YDFI +KG GK++SS G V+SL +VLEVY
Sbjct: 240 KDHHSSGGSFDTSKNIV-KIFQGSPPVTFQYDFISIKGRGGKISSSSGDVISLKDVLEVY 298
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PEV R+LFA TRPNTEF ISFDLDVIKIYEDYD+ ERI + E K +E RIYE
Sbjct: 299 TPEVTRFLFASTRPNTEFSISFDLDVIKIYEDYDRFERIYYGVEDIK-EEKKRAFKRIYE 357
Query: 366 LSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNWI 425
LSQ + I YQI FRHL + QI +I ++ L +V+ Q D+L + +CA NWI
Sbjct: 358 LSQPYMPSKRIPYQIGFRHLSVICQIFENNINKILNYLKNVQEDQKDKLINKIKCAINWI 417
Query: 426 TDGGAPEEFKFALRADGSKAE-LSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKE 484
D APE+FKF+LR+ E L E KAI + + L + E+ +Y ++E
Sbjct: 418 RD-FAPEDFKFSLRSKFDSIEILKENSKKAINELLNFLKKNFEVATEQDIQNEIYKISRE 476
Query: 485 CGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
+EP F +Y+ L+ K++GP+LAGF+K IG ER EKI Y
Sbjct: 477 NNIEPALFFKQIYKILIDKEKGPKLAGFIKIIGIERFEKIVSRY 520
>gi|16304832|emb|CAC95161.1| class 1 lysyl-tRNA synthetase [Borrelia garinii]
Length = 521
Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats.
Identities = 271/524 (51%), Positives = 359/524 (68%), Gaps = 6/524 (1%)
Query: 6 KLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
K HWAD AEKI +E+G ++YT ASGITPSGTVH+GNFRE+ISVDLV RAL+ G V
Sbjct: 2 KTAHWADFYAEKIKKEKGPKNIYTVASGITPSGTVHIGNFREVISVDLVARALKDSGSQV 61
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
RFIYSWD+YDVFRKVP NMP+ E+L YLR IT VPDT +YAR +E + E LP
Sbjct: 62 RFIYSWDNYDVFRKVPKNMPEQELLTTYLRQAITRVPDTRGYKTSYARANEIEFEKYLPI 121
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTA 185
VGI+PE++ Q+++Y YA +K AL++++EL + LN YR + K+ E ++P+S+FCT
Sbjct: 122 VGINPEFIDQSKKYTNSTYASQIKFALNHKKELAEALNEYR--TSKLEENWYPISIFCTK 179
Query: 186 CNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
CN+DTT + ++D +++KYSCECG+ E+LD+R ++KL WR+DWPMRW +EK FEPAG
Sbjct: 180 CNRDTTTVNNYDNHYSVKYSCECGNQESLDIRTTWAIKLPWRIDWPMRWKYEKVDFEPAG 239
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDHHS GGSFDT+ + +I+ PV+F+YDFI +KG GK++SS G V+SL +VLEVY
Sbjct: 240 KDHHSSGGSFDTSKNIV-KIFQGSPPVTFQYDFISIKGRGGKISSSLGDVISLKDVLEVY 298
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PEV R+LFA T+PNTEF ISFDLDVIKIYEDYD+ ERI + E K +E RIYE
Sbjct: 299 TPEVTRFLFAATKPNTEFSISFDLDVIKIYEDYDRFERIYYGVEDIK-EEKKRSFKRIYE 357
Query: 366 LSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNWI 425
LSQ + I YQI FRHL + QI +I ++ L +V+ Q D+L + +C NWI
Sbjct: 358 LSQPYMPSKRIPYQIGFRHLSVICQIFENNINKILNYLKNVQDDQKDKLINKIKCVINWI 417
Query: 426 TDGGAPEEFKFALRADGSKAE-LSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKE 484
D APE+FKF LR+ E L E KAI + DSL + E+ +Y ++E
Sbjct: 418 KD-FAPEDFKFLLRSKFDNIEILKEDNKKAISELLDSLKKNFEVATEQDIQNEIYKISRE 476
Query: 485 CGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
+EP F +Y+ L+ K++GP+LAGF+K IG +R EKI Y
Sbjct: 477 NNIEPALFFKQIYKILIDKEKGPKLAGFIKIIGIDRFEKIVSKY 520
>gi|51598914|ref|YP_073102.1| lysyl-tRNA synthetase [Borrelia garinii PBi]
gi|55977753|sp|Q937U7|SYK_BORGA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|51573485|gb|AAU07510.1| lysyl-tRNA synthetase [Borrelia garinii PBi]
Length = 521
Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats.
Identities = 270/524 (51%), Positives = 359/524 (68%), Gaps = 6/524 (1%)
Query: 6 KLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
K HWAD AEKI +E+G ++YT ASGITPSGTVH+GNFRE+ISVDLV RAL+ G V
Sbjct: 2 KTAHWADFYAEKIKKEKGPKNIYTVASGITPSGTVHIGNFREVISVDLVARALKDSGSQV 61
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
RFIYSWD+YDVFRKVP NMP+ E+L YLR IT VPDT +YAR +E + E LP
Sbjct: 62 RFIYSWDNYDVFRKVPKNMPEQELLTTYLRQAITRVPDTRGYKTSYARANEIEFEKYLPI 121
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTA 185
VGI+PE++ Q+++Y YA +K AL++++EL + LN YR + K+ E ++P+S+FCT
Sbjct: 122 VGINPEFIDQSKKYTNSTYASQIKFALNHKKELAEALNEYR--TSKLEENWYPISIFCTK 179
Query: 186 CNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
CN+DTT + ++D +++KYSCECG+ E+LD+R ++KL WR+DWPMRW +EK FEPAG
Sbjct: 180 CNRDTTTVNNYDNHYSVKYSCECGNQESLDIRTTWAIKLPWRIDWPMRWKYEKVDFEPAG 239
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDHHS GGSFDT+ + +I+ PV+F+YDFI +KG GK++SS G V+SL +VLE+Y
Sbjct: 240 KDHHSSGGSFDTSKNIV-KIFQGSPPVTFQYDFISIKGRGGKISSSLGDVISLKDVLEIY 298
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PEV R+LFA T+PNTEF ISFDLDVIKIYEDYD+ ERI + E K +E RIYE
Sbjct: 299 TPEVTRFLFAATKPNTEFSISFDLDVIKIYEDYDRFERIYYGVEDIK-EEKKRSFKRIYE 357
Query: 366 LSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNWI 425
LSQ + I YQI FRHL + QI +I ++ L +V+ Q D+L + +C NWI
Sbjct: 358 LSQPYMPSKRIPYQIGFRHLSVICQIFENNINKILNYLKNVQDDQKDKLINKIKCVINWI 417
Query: 426 TDGGAPEEFKFALRADGSKAE-LSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKE 484
D APE+FKF LR+ E L E KAI + DSL + E+ +Y ++E
Sbjct: 418 KD-FAPEDFKFLLRSKFDNIEILKEDNKKAISELLDSLKKNFEVATEQDIQNEIYKISRE 476
Query: 485 CGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
+EP F +Y+ L+ K++GP+LAGF+K IG +R EKI Y
Sbjct: 477 NNIEPALFFKQIYKILIDKEKGPKLAGFIKIIGIDRFEKIVSKY 520
>gi|16304834|emb|CAC95162.1| class 1 lysyl-tRNA synthetase [Borrelia hermsii]
Length = 514
Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats.
Identities = 263/518 (50%), Positives = 356/518 (68%), Gaps = 6/518 (1%)
Query: 12 DQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSW 71
D A+KII E+G+ + YT ASGITPSGTVH+GNFRE+ISVDLV RAL+ G+NVRFIYSW
Sbjct: 1 DFYAKKIIEEKGEKEQYTVASGITPSGTVHIGNFREVISVDLVARALKDAGRNVRFIYSW 60
Query: 72 DDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPE 131
D+YDVFRKVP NMP E+L +LR IT VPDT +YAR +E + E LP VGI PE
Sbjct: 61 DNYDVFRKVPKNMPNQELLTTHLRQAITRVPDTQTNQSSYARANEVEFEKYLPIVGIKPE 120
Query: 132 YLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNKDTT 191
++ Q+ +Y Y+ +K ALD+++E++ +LN YR + K+ + ++P+S+FCT CN+DTT
Sbjct: 121 FIDQSLKYMSSDYSSQIKFALDHKDEIEKVLNKYR--TTKLADNWYPISIFCTKCNRDTT 178
Query: 192 KIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQ 251
I++++ ++++Y CECG+ E+LDLRK +VKL WR+DWPMRW +E FEPAGKDHHS
Sbjct: 179 TIKNYNHCYSIEYCCECGNKESLDLRKTWAVKLPWRIDWPMRWKYENVDFEPAGKDHHSS 238
Query: 252 GGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVAR 311
GGSFDT S+ +I+ P++F+YDFI +KG GK++SS G V SL +VLE+Y PEV R
Sbjct: 239 GGSFDT-SIEIVKIFGGTPPITFQYDFISIKGRGGKISSSSGDVGSLKDVLEIYTPEVTR 297
Query: 312 YLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDG 371
+LFA T+PNTEF ISFDLDVIKIYEDYDK ER+ + + K ++ E RIYELSQ
Sbjct: 298 FLFASTKPNTEFSISFDLDVIKIYEDYDKFERVYYGIDDIKENKK-EAFKRIYELSQPKL 356
Query: 372 MPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ I YQI FRHL + QI GD + + K L DVK +Q +L + ECA NWI AP
Sbjct: 357 PDKEIPYQIGFRHLSTICQIFEGDKDKIFKLLNDVKESQKAKLINKIECAINWIKK-FAP 415
Query: 432 EEFKFALRADGSKAE-LSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPK 490
E+FKF+LR E L + + + + D L + + EK +Y+ A+ +EP
Sbjct: 416 EDFKFSLRYTFDNIEPLKDNNKQGVTQLLDFLKKDFNNITEKEIQDEIYNIARNNNIEPP 475
Query: 491 QMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKDY 528
F +Y L++KD+GP+LAGF+K IG ++ E+I K Y
Sbjct: 476 LFFKQLYNILINKDKGPKLAGFIKIIGIKKFEEIVKHY 513
>gi|149917711|ref|ZP_01906207.1| lysyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
gi|149821493|gb|EDM80893.1| lysyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
Length = 543
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 223/534 (41%), Positives = 313/534 (58%), Gaps = 27/534 (5%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSR----G 62
L HWAD A + I + ++YT A+GITPSG VHVGNFREII+VDLV RALR R G
Sbjct: 8 LSHWADHAAARTIAAHPEAELYTVAAGITPSGVVHVGNFREIITVDLVARALRDRLGEQG 67
Query: 63 KNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAV 122
K VRFIYSWDD+DVFRKVP MP+ ++L LR I VPD + ++YA ++ +E
Sbjct: 68 KKVRFIYSWDDFDVFRKVPKGMPQQDMLTDNLRRSIADVPDPYGELDSYASNNIAALERS 127
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVF 182
+ +GI E++ Q++RY+ G YAEG++KAL N +K IL+ YR E + E + P++ F
Sbjct: 128 IEPLGIDCEFIRQSKRYRAGAYAEGIRKALQNTAAIKAILDQYRREP--LPESWLPIAGF 185
Query: 183 CTACNKDTTKIESWDGD----WTLKYSCEC-GHCEALDLRKAKSVKLGWRVDWPMRWAFE 237
+D +WD + WT++Y E G A DLR+ VKL WR+DWPMRWA E
Sbjct: 186 DPETGRDDLSF-TWDPEENEGWTVRYRVESTGREGAFDLREGGDVKLLWRIDWPMRWAEE 244
Query: 238 KTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVS 297
+ +FEP GKDH S+GGS+DTA + D++Y AP YDF+ +KG+ GK++SS G VV+
Sbjct: 245 QVMFEPGGKDHSSEGGSYDTAKQIVDQVYGGWAPAYVAYDFVSIKGMGGKISSSSGNVVT 304
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKA-EKAKNDET 356
+ L VY+P++ R+LFA RPNTEF ISFDLDV+K+YEDYD+ R+A +A + + D+
Sbjct: 305 VETCLRVYEPKMLRWLFAAYRPNTEFAISFDLDVLKLYEDYDRAVRLAHEALDGGRKDKK 364
Query: 357 FEKEYRIYELSQIDG----MPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVD 412
R +L+ G +Q FR L +LQI GDI+ +
Sbjct: 365 RTVARRTLDLADPAGERIEAGTTPPFQPSFRPLSVILQIYDGDIDRARSHYEATGELNTE 424
Query: 413 RLRT----RAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL--PKM 466
R R RA C WNWI D APE F++ +R + + L A++ + +L P
Sbjct: 425 RERALFDQRARCVWNWIED-HAPESFRYRIRREPIRRSLEGEAKVALERLVTALKANPSA 483
Query: 467 DEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
E + L++ + L PKQ F VY ++ +++GP+L M +G ER
Sbjct: 484 SEAELIPVMKTLFEGLE---LGPKQFFPVVYDLILDREKGPKLTSLMTVMGIER 534
>gi|57642175|ref|YP_184653.1| lysyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
gi|73919757|sp|Q5JHQ3|SYK_PYRKO Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|57160499|dbj|BAD86429.1| lysyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
Length = 526
Score = 384 bits (987), Expect = e-105, Method: Composition-based stats.
Identities = 210/523 (40%), Positives = 321/523 (61%), Gaps = 17/523 (3%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
++HWAD AEKIIRERGD + Y SGITPSG VH+GNFRE + +V ALR RGK VR
Sbjct: 1 MVHWADYMAEKIIRERGDKEEYVVESGITPSGYVHIGNFREFFTAYIVGHALRDRGKRVR 60
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
I+ WDDYD FRKVP N+P PE +++L P+ VPD + E+YA H E + ++
Sbjct: 61 HIHMWDDYDRFRKVPKNVP-PE-WKEHLTKPVREVPDPWGCHESYADHFMSLFEEEISKL 118
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHK--ITEEYWPVSVFCT 184
GI ++L+ +E Y+ G YA+ ++ AL+ R+E+K IL+ YR+ + + + + + PV ++C
Sbjct: 119 GIEADFLHASELYKSGEYAKEIRLALEKRDEIKAILDKYRERAKQPPLEDSWQPVMIYCP 178
Query: 185 ACNKDTTKIESWDGDWTLKYSC-ECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEP 243
C K+ + SWDG+W + Y C CG D+R+ +VKL WRVDWPMRWA K FEP
Sbjct: 179 HCRKEAEFV-SWDGEWKVSYKCPHCGAEGETDIREG-NVKLRWRVDWPMRWAHFKVDFEP 236
Query: 244 AGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLE 303
AGKDH + G S+DT + ++++ W AP++ Y+F+G+KG GKM+ SKG V+ L+++ E
Sbjct: 237 AGKDHLAAGSSYDTGKEIVEKVFGWKAPLTLMYEFVGIKGQKGKMSGSKGNVILLSDLYE 296
Query: 304 VYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRI 363
V +P + R+++A RPN E I L ++ +Y+++D+ ERI + E AKN E E+ R
Sbjct: 297 VLEPGIIRFIYAKARPNKELRIDLGLGLLNLYDEFDRVERIYFGLEHAKNPEEEEELKRT 356
Query: 364 YELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPD-------VKPAQVDRLRT 416
YELS + +PE + Q PFR L L+Q+ D + +I+ L + + ++R++
Sbjct: 357 YELS-MPKLPERLVAQAPFRFLVTLVQMPHLDEDGIIRILQEQGHVPENLTDDDIERIKL 415
Query: 417 RAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFST 476
R A NW+ + AP++ KF+L + EL PE + L + + +
Sbjct: 416 RIRLAKNWV-EKYAPDDVKFSLLERPPEIEL-RPEIREAMLEVAEWLEEHERFSVDELNN 473
Query: 477 ALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
++DAAK+ G+ K+ F A+Y + KD+GPRLA F+ ++ +E
Sbjct: 474 VIFDAAKKRGIPSKEWFKALYNIFIGKDRGPRLAPFLASLNRE 516
>gi|14520422|ref|NP_125897.1| lysyl-tRNA synthetase [Pyrococcus abyssi GE5]
gi|11387157|sp|Q9V270|SYK_PYRAB Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|5457637|emb|CAB49128.1| lysS lysyl-tRNA synthetase [Pyrococcus abyssi GE5]
Length = 526
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 210/523 (40%), Positives = 319/523 (60%), Gaps = 20/523 (3%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
++HWAD A+KIIRERG+ D Y SGITPSG VHVGNFRE+ + +V ALR +G VR
Sbjct: 4 VVHWADYVADKIIRERGEKDRYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVR 63
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
I+ WDDYD FRKVP N+P PE ++YL P++ VPD + ++YA H E + +
Sbjct: 64 HIHMWDDYDRFRKVPRNVP-PE-WKEYLGMPVSEVPDPWGCHDSYAEHFMEKFEREVKEL 121
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHK--ITEEYWPVSVFCT 184
GI E+LY +E Y++G Y+E ++KA + +E++ +ILN YR+ + + + E +WP V+C
Sbjct: 122 GIEVEFLYASELYKRGEYSEEIRKAFEGKEKIMEILNKYREIAKQPPLPENWWPAMVYCP 181
Query: 185 ACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
K+ IE WDG+W +KY C GH +D+R +VKL WRVDWPMRWA FEPA
Sbjct: 182 EHRKEAEIIE-WDGEWKVKYRCPEGHEGWVDIRSG-NVKLRWRVDWPMRWAHFDVDFEPA 239
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
GKDH + G S+DT + IY AP+S Y+F+G+KG GKM+ SKG V+ L+++ EV
Sbjct: 240 GKDHLAAGSSYDTGKEIIKAIYGKEAPMSLMYEFVGIKGEKGKMSGSKGNVILLSDLYEV 299
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
+P + R+++A RPN E I + ++ +Y+++DK ERI + E AK D E+ R Y
Sbjct: 300 LEPGLVRFIYARHRPNKEIRIDLGMGLLNLYDEFDKVERIYFGVEDAKGD--VEELKRTY 357
Query: 365 ELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-------PDVKPAQVDRLRTR 417
ELS +P + Q PFR L L+Q+ D + +I L +++ ++R+R R
Sbjct: 358 ELSN-PRIPNRLIAQAPFRFLAVLVQMPHLDEDGIISVLTNQGHVPKELEREDIERIRLR 416
Query: 418 AECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMD-EMDEKTFST 476
A NW+ + AP+ KF++ + K E+ E +A++ + + K +DE +
Sbjct: 417 IRLAKNWV-EKYAPDSVKFSILPEPPKIEIDESVREAMEEVAKWIESKSTFSVDE--LNN 473
Query: 477 ALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
L++ AK+ G+ K+ F +Y+ + K++GPRLA F+ ++ K+
Sbjct: 474 VLFEVAKKRGISSKEWFSTLYKLFIGKERGPRLASFLASLDKD 516
>gi|14590155|ref|NP_142220.1| lysyl-tRNA synthetase [Pyrococcus horikoshii OT3]
gi|8928365|sp|O57963|SYK_PYRHO Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|3256613|dbj|BAA29296.1| 523aa long hypothetical lysyl-tRNA synthetase [Pyrococcus
horikoshii OT3]
Length = 523
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 205/521 (39%), Positives = 312/521 (59%), Gaps = 18/521 (3%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
++HWAD A+KIIRERG+ + Y SGITPSG VHVGNFRE+ + +V ALR +G VR
Sbjct: 1 MVHWADYIADKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVR 60
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
I+ WDDYD FRKVP N+P+ + YL PI+ VPD + E+YA H E + ++
Sbjct: 61 HIHMWDDYDRFRKVPRNVPQE--WKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKL 118
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHK--ITEEYWPVSVFCT 184
GI ++LY +E Y++G Y+E ++ A + R+++ +ILN YR+ + + + E +WP V+C
Sbjct: 119 GIEVDFLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCP 178
Query: 185 ACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
++ IE WDG W +KY C GH +D+R +VKL WRVDWPMRW+ FEPA
Sbjct: 179 EHRREAEIIE-WDGGWKVKYKCPEGHEGWVDIRSG-NVKLRWRVDWPMRWSHFGVDFEPA 236
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
GKDH G S+DT + +Y AP+S Y+F+G+KG GKM+ SKG V+ L+++ EV
Sbjct: 237 GKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV 296
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
+P + R+++A RPN E I L ++ +Y+++DK ERI + E K D+ E+ R Y
Sbjct: 297 LEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFDKVERIYFGVEGGKGDD--EELRRTY 354
Query: 365 ELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-------PDVKPAQVDRLRTR 417
ELS + PE + Q PFR L L+Q+ E +I L D+ V+R++ R
Sbjct: 355 ELS-MPKKPERLVAQAPFRFLAVLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLR 413
Query: 418 AECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTA 477
A NW+ APE+ KF++ + E+SE +A+ + + L +E + F+
Sbjct: 414 INLARNWVKK-YAPEDVKFSILEKPPEVEVSEDVREAMNEVAE-WLENHEEFSVEEFNNI 471
Query: 478 LYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK 518
L++ AK G+ ++ F +Y+ + K++GPRLA F+ ++ +
Sbjct: 472 LFEVAKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDR 512
>gi|20663866|pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
gi|20663867|pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 365 bits (938), Expect = 3e-99, Method: Composition-based stats.
Identities = 204/521 (39%), Positives = 311/521 (59%), Gaps = 18/521 (3%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
++HWAD A+KIIRERG+ + Y SGITPSG VHVGNFRE+ + +V ALR +G VR
Sbjct: 1 MVHWADYIADKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVR 60
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
I+ WDDYD FRKVP N+P+ + YL PI+ VPD + E+YA H E + ++
Sbjct: 61 HIHMWDDYDRFRKVPRNVPQE--WKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKL 118
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHK--ITEEYWPVSVFCT 184
GI + LY +E Y++G Y+E ++ A + R+++ +ILN YR+ + + + E +WP V+C
Sbjct: 119 GIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCP 178
Query: 185 ACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
++ IE WDG W +KY C GH +D+R +VKL WRVDWPMRW+ FEPA
Sbjct: 179 EHRREAEIIE-WDGGWKVKYKCPEGHEGWVDIRSG-NVKLRWRVDWPMRWSHFGVDFEPA 236
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
GKDH G S+DT + +Y AP+S Y+F+G+KG GKM+ SKG V+ L+++ EV
Sbjct: 237 GKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV 296
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
+P + R+++A RPN E I L ++ +Y++++K ERI + E K D+ E+ R Y
Sbjct: 297 LEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIYFGVEGGKGDD--EELRRTY 354
Query: 365 ELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-------PDVKPAQVDRLRTR 417
ELS + PE + Q PFR L L+Q+ E +I L D+ V+R++ R
Sbjct: 355 ELS-MPKKPERLVAQAPFRFLAVLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLR 413
Query: 418 AECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTA 477
A NW+ APE+ KF++ + E+SE +A+ + + L +E + F+
Sbjct: 414 INLARNWVKK-YAPEDVKFSILEKPPEVEVSEDVREAMNEVAE-WLENHEEFSVEEFNNI 471
Query: 478 LYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK 518
L++ AK G+ ++ F +Y+ + K++GPRLA F+ ++ +
Sbjct: 472 LFEVAKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDR 512
>gi|18976507|ref|NP_577864.1| lysyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
gi|24418704|sp|Q8U4F3|SYK_PYRFU Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|18892056|gb|AAL80259.1| lysyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
Length = 523
Score = 361 bits (927), Expect = 6e-98, Method: Composition-based stats.
Identities = 208/529 (39%), Positives = 314/529 (59%), Gaps = 32/529 (6%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
++HWAD AEKII+ERG+ + Y SGITPSG VHVGNFRE+ + +V ALR RG NVR
Sbjct: 1 MVHWADYMAEKIIKERGEKEEYVVESGITPSGYVHVGNFRELFTAYIVGHALRDRGYNVR 60
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
I+ WDDYD FRKVP N+P+ E+YL P++ VPD + ++YA H E + ++
Sbjct: 61 HIHMWDDYDRFRKVPKNVPQE--WEEYLGMPVSEVPDPWGCHDSYAEHFMGLFEEEVAKL 118
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHK--ITEEYWPVSVFCT 184
+ E+L +E Y+KG YAE ++KA + + ++ ILN YR+ + + + E +WP V+C
Sbjct: 119 EMDVEFLRASELYKKGEYAEEIRKAFEAKGKIMAILNKYREVAKQPPLPENWWPAMVYCP 178
Query: 185 ACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
K++ I+ WDG+W +KY C GH D+R +VKL WRVDWPMRWA FEPA
Sbjct: 179 EHRKESEIID-WDGEWGVKYRCPEGHEGWTDIRDG-NVKLRWRVDWPMRWAHFGVDFEPA 236
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
GKDH + G S+DT + +Y AP++ Y+F+G+KG GKM+ SKG V+ L+++ EV
Sbjct: 237 GKDHLAAGSSYDTGKEIIREVYGKEAPLTLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV 296
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
+P + R+++A RPN E I L ++ +Y+++D+ ERI + EK K DE E+ R Y
Sbjct: 297 LEPGLVRFIYAKHRPNKEIRIDLGLGLLNLYDEFDRVERIYFGIEKGKGDE--EELKRTY 354
Query: 365 ELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-------PDVKPAQVDRLRTR 417
ELS + P+ + Q PFR L L+Q+ IE +I L ++ +DR++ R
Sbjct: 355 ELS-VPKKPKRLVAQAPFRFLAVLVQLPHLSIEDIIFTLVKQGHVPENLTQEDIDRIKLR 413
Query: 418 AECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIK-TIRDSLLPKMDEMDE----- 471
+ A NW+ + APEE KF + LS P + TIR+++L + ++
Sbjct: 414 IKLAKNWV-EKYAPEEVKFKI--------LSVPGVSEVDPTIREAMLEVAEWLESHEDFA 464
Query: 472 -KTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ L++ AK+ + K F +Y+ + KD+GP+LA F+ + +E
Sbjct: 465 VDELNNILFEVAKKRNIPSKVWFSTLYKLFIGKDRGPKLANFLAALDRE 513
>gi|49477784|ref|YP_036701.1| lysine--tRNA ligase (lysyl-tRNA synthetase) [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49329340|gb|AAT59986.1| lysine--tRNA ligase (lysyl-tRNA synthetase) [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 517
Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats.
Identities = 178/535 (33%), Positives = 297/535 (55%), Gaps = 47/535 (8%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWA + A ++IR+ + + + CASGI+PSG+VH+GNFREI++ VVRAL+ GK RF
Sbjct: 1 MHWAYEVALELIRKHPNKETFVCASGISPSGSVHIGNFREIVTTYFVVRALQDLGKKTRF 60
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+SWDDYD FRKVP N+ V KY+ P +PD + +YA H E + E L G
Sbjct: 61 IFSWDDYDRFRKVPKNIDPSFV--KYIGMPYCDIPDPYRCHNSYAEHFEKEFEKSLQAFG 118
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR--DESHKITEEYWPVSVFCTA 185
I E++YQ + Y+ G Y + + +AL R+E+ D+L ++ + S + E ++PV+++C
Sbjct: 119 IEVEFIYQHDEYRNGRYNKSILEALYKRKEIYDVLMDFKTGECSEEERERFYPVTLYCER 178
Query: 186 CNKDTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
C KDTT I +D T++Y CECG+ L + +KL W++DWPMRW E +FEP
Sbjct: 179 CGKDTTTITHFDEALKTVRYECECGNQNELSILNTNKMKLNWKIDWPMRWMIEDVIFEPG 238
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
G+DH S+ GS++ + ++ +I+N AP YDFIG+KG KM+SS G ++ +E+L+V
Sbjct: 239 GRDHSSETGSYNVSKEIARKIFNREAPHYVAYDFIGIKGNHEKMSSSSGNSITPSELLKV 298
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE------ 358
Y PEV ++FA RPN F I D DVI+ Y +Y++ + +++ + KN++ F+
Sbjct: 299 YLPEVILFMFAKYRPNAAFHIGLDEDVIRNYTEYERLKG-SYENKTLKNEDLFDAIKLSR 357
Query: 359 -----KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR 413
KEY + +Q+ G +P LL +S ++ +++ + + +D
Sbjct: 358 AENGFKEYP--KFNQVAGT-------LP------LLHFDSFILQGILEKID--RSYGLDE 400
Query: 414 LRTRAECAWNWI--------TDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPK 465
+R+ + A WI + + +F D S+ E + +++ +D
Sbjct: 401 MRSISNRAEYWIRKFQSEKLIEVNQEKNTEFYNTLDKSQKEWLVEVCEILRSNKD----- 455
Query: 466 MDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
+ E+ +S ++ K KQ+F +Y ++++ GPR+ + +G E+
Sbjct: 456 YSNIMEQLYSICHHENKKIMKENQKQLFTIIYMLIINQSNGPRIPLLIHVVGIEK 510
>gi|118477986|ref|YP_895137.1| lysine--tRNA ligase (lysyl-tRNA synthetase) [Bacillus thuringiensis
str. Al Hakam]
gi|118417211|gb|ABK85630.1| lysine--tRNA ligase (lysyl-tRNA synthetase) [Bacillus thuringiensis
str. Al Hakam]
Length = 517
Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats.
Identities = 178/535 (33%), Positives = 298/535 (55%), Gaps = 47/535 (8%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWA + A ++IR+ + + + CASGI+PSG+VH+GNFREI++ VVRAL+ GK RF
Sbjct: 1 MHWAYEVALELIRKHPNKETFVCASGISPSGSVHIGNFREIVTTYFVVRALQDLGKKTRF 60
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+SWDDYD FRKVP N+ V KY+ P +PD + +YA H E + E L G
Sbjct: 61 IFSWDDYDRFRKVPKNIDPSFV--KYIGMPYCDIPDPYGCHNSYAEHFEKEFEKSLQAFG 118
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR--DESHKITEEYWPVSVFCTA 185
I E++YQ + Y+ G Y + + +AL R+E+ D+L ++ + S + E ++PV+++C
Sbjct: 119 IEVEFIYQHDEYRNGRYNKSILEALYKRKEIYDVLMDFKTGECSEEERERFYPVTLYCER 178
Query: 186 CNKDTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
C KDTT I +D T++Y CECG+ L + +KL W++DWPMRW E +FEP
Sbjct: 179 CGKDTTTITHFDEALKTVRYECECGNQNELSILNTNKMKLNWKIDWPMRWMIEDVIFEPG 238
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
G+DH S+ GS++ + ++ +I+N AP YDFIG+KG KM+SS G ++ +E+L+V
Sbjct: 239 GRDHSSETGSYNVSKEIARKIFNREAPHYVAYDFIGIKGNHEKMSSSSGNSITPSELLKV 298
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE------ 358
Y PEV ++FA RPN F IS D DVI+ Y +Y++ + +++ + KN++ F+
Sbjct: 299 YLPEVILFMFAKYRPNAAFHISLDEDVIRNYTEYERLKG-SYENKTLKNEDLFDAIKLSR 357
Query: 359 -----KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR 413
KEY + +Q+ G +P LL +S ++ +++ + + +D
Sbjct: 358 AENGFKEYP--KFNQVAGT-------LP------LLHFDSFILQGILEKID--RSYGLDE 400
Query: 414 LRTRAECAWNWI--------TDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPK 465
+++ + A WI + + +F D S+ E + +++ +D
Sbjct: 401 MKSISNRAEYWIRKFQSEKLIEVNQEKNTEFYNTLDKSQKEWLVEVCEILRSNKD----- 455
Query: 466 MDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
+ E+ +S ++ K KQ+F +Y ++++ GPR+ + +G E+
Sbjct: 456 YSNIMEQLYSICHHENKKIMKENQKQLFTIIYMLIINQSNGPRIPLLIHVVGIEK 510
>gi|125975297|ref|YP_001039207.1| lysyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
gi|125715522|gb|ABN54014.1| lysyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
Length = 533
Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats.
Identities = 181/531 (34%), Positives = 287/531 (54%), Gaps = 23/531 (4%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HW+D+ A K+I D D + A+G +PSGTVH+GNFR+ ++V V +ALR +GK
Sbjct: 1 MHWSDEIANKLISMHPDKDEFVLAAGTSPSGTVHIGNFRDAVTVYFVAKALRKKGKKTVL 60
Query: 68 IYSWDDYDVFRKVPANMP--KPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
+ SWDDYD FRKVP N+P K E EKY+ P + VPD F +YA H+E + E L +
Sbjct: 61 LLSWDDYDRFRKVPKNLPQEKIEEYEKYIGMPYSAVPDPFGCHASYAEHYEKEYEESLEK 120
Query: 126 VGIHPEYL-YQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEE--YWPVSVF 182
+G+ + + YQ Y G Y +G+ AL NR+E+ DI+ ++ + + E ++P+SV+
Sbjct: 121 IGLKFDIIRYQTREYMSGRYKDGIITALKNRKEIYDIMQEFKTQEYSAEERENFYPLSVY 180
Query: 183 CTACNKDTTKIESWDGDWTL-KYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
C C KDTTKI D + YSC+CG+ +++ + + KL W+VDWPMRW +E F
Sbjct: 181 CDKCGKDTTKITDVSEDCNVVSYSCKCGNVSTVNISEQGNCKLPWKVDWPMRWMYEGVDF 240
Query: 242 EPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEV 301
EP GKDH S GS+ + +++ +IYN P+ Y+FIG+KG+ GKM+ S G ++L E+
Sbjct: 241 EPGGKDHASPQGSYQVSRVIARKIYNIDEPLFQGYEFIGIKGLTGKMSGSSGLNINLEEL 300
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEY 361
L++Y PE+ +L+A PN F IS DV +IY ++D+ + N E ++
Sbjct: 301 LKIYPPEIIWWLYARKTPNEAFDISLGDDVPRIYGEFDR-----FCENYYNNPENLDEIT 355
Query: 362 RIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPA-QVDRLRTRAEC 420
+ +DG+P PF L L I++G I+ + + + + + + LR R E
Sbjct: 356 KSTMDVVLDGVPR--KPNPPFNILITLYSISNGKIDMIEEMFTKIGMSFKAEELRERLEK 413
Query: 421 AWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD 480
W+ K D E + E K ++D +M+ + +T LY
Sbjct: 414 VDYWLNKYAPNMLMKLNTAPDFEYFETLDDEVKG--WVKDFCELIKIKMNAEELTTRLYA 471
Query: 481 AAKECGLEPKQ-------MFVAVYQALVSKDQGPRLAGFMKTIGKERLEKI 524
K+ + K+ F +Y+ L+ +D+GP L+ + +G E + I
Sbjct: 472 IPKKETADMKENKKNQLLFFKTMYRLLIGEDKGPMLSTLILAVGAENILPI 522
>gi|75764295|ref|ZP_00743834.1| Class 1 lysyl-tRNA synthetase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488218|gb|EAO51895.1| Class 1 lysyl-tRNA synthetase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 517
Score = 306 bits (783), Expect = 3e-81, Method: Composition-based stats.
Identities = 177/521 (33%), Positives = 294/521 (56%), Gaps = 21/521 (4%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWA + A ++IR+ + + + CASGI+PSG+VH+GNFREII+ VVRAL+ GK RF
Sbjct: 1 MHWAYEVAHELIRKHPNKETFVCASGISPSGSVHIGNFREIITTYFVVRALQDLGKKTRF 60
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+SWDDYD FRKVP N+ KY+ P +PD + +YA H E + E L G
Sbjct: 61 IFSWDDYDRFRKVPKNIDPS--FAKYIGMPYCDIPDPYGCHNSYAEHFEKEFEKSLQAFG 118
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR--DESHKITEEYWPVSVFCTA 185
I E++YQ + Y+ G Y E + +AL R+++ +IL ++ + S + E ++P +++C
Sbjct: 119 IGVEFIYQHDEYRSGRYNENILEALYKRKDIYNILMDFKTGECSEEERESFYPATLYCER 178
Query: 186 CNKDTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
C KDTT I +D T++Y CECG+ + L + +KL W++DWPMRW E+ VFEP
Sbjct: 179 CGKDTTTITHFDEVLKTIRYECECGNEKELSVLNTNKMKLNWKIDWPMRWMIEEVVFEPG 238
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
G+DH S+ GS++ + ++ +I+N AP YDFIG+KG KM+SS G ++ +E+L+V
Sbjct: 239 GRDHSSETGSYNVSKEIARKIFNREAPHYVAYDFIGIKGNHEKMSSSSGNSITPSELLKV 298
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
Y PEV ++FA RPN F I D DVI+ Y +Y++ + +++ + KN++ +
Sbjct: 299 YLPEVILFMFAKYRPNAAFHIGLDEDVIRNYTEYERLKD-SYENKTLKNEDLLDA----I 353
Query: 365 ELSQID-GMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWN 423
+LS++ G E + L LL +S ++ ++K + + +D +R +
Sbjct: 354 KLSRVTIGFKEYPKFNQVAGTL-PLLNFDSTILQGILKKID--RSYALDEMRAVSNRTEY 410
Query: 424 WITDGGAPEEFKFALRADGSKA---ELSEPETKAIKTIRDSLLPKMD--EMDEKTFSTAL 478
WI + E A+ + + L E + + + + D L D + E+ ++
Sbjct: 411 WIRN--FQSEKLIAVNQERNTEFYNTLDERQKEWLVEVCDILRSNKDYSHLMEQLYAICH 468
Query: 479 YDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
++ K KQ+F +Y+ ++++ GPR+ + +G E
Sbjct: 469 HENKKIMKENQKQLFTIIYKLIMNQSNGPRIPLLIHVVGIE 509
>gi|47568720|ref|ZP_00239416.1| lysyl-tRNA synthetase [Bacillus cereus G9241]
gi|47554614|gb|EAL12969.1| lysyl-tRNA synthetase [Bacillus cereus G9241]
Length = 517
Score = 306 bits (783), Expect = 3e-81, Method: Composition-based stats.
Identities = 179/523 (34%), Positives = 296/523 (56%), Gaps = 21/523 (4%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWA + A ++IR+ + +++ CASGI+PSG+VH+GNFREI++ VVRAL+ GK RF
Sbjct: 1 MHWAYEVAHELIRKHPNKEIFVCASGISPSGSVHIGNFREIVTTYFVVRALQDLGKKTRF 60
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+S DDYD FRKVP N+ KY+ P +PD + +YA H E + E L G
Sbjct: 61 IFSLDDYDRFRKVPKNIDPS--FAKYIGMPYCDIPDPYGCHNSYAEHFEKEFEESLQVFG 118
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR--DESHKITEEYWPVSVFCTA 185
I E++YQ Y+ G Y + + AL R+E+ DIL +++ + S + E ++PV+++C
Sbjct: 119 IEVEFIYQHSEYRSGRYNKNILGALCKRKEIYDILMSFKTGECSEEEREGFYPVTLYCEK 178
Query: 186 CNKDTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
C KD T I +D T++Y CEC + L + ++KL W+VDWPMRW E VFEP
Sbjct: 179 CGKDATTITHFDEVLKTVRYECECRNQNELSILNTNNMKLNWKVDWPMRWMIEDVVFEPG 238
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
G+DH S+ GS++ + ++ +I+N AP YDFIG+KG KM+SS G ++ +E+L+V
Sbjct: 239 GRDHSSETGSYNVSKEIARKIFNREAPHYVAYDFIGIKGNHEKMSSSSGNSITPSELLKV 298
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
Y PEV ++FA RP+ F I D DVI+ Y +Y++ + +++ + KN++ F+
Sbjct: 299 YLPEVILFMFAKYRPDAAFHIGLDEDVIRNYTEYERLKD-SYENKTLKNEDLFDA----I 353
Query: 365 ELSQID-GMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWN 423
+LS++D G E + L LL +S ++ +++ + + +D +R + A +
Sbjct: 354 KLSRVDSGFKEYPKFNQVAGTL-PLLNFDSFILQEILEKID--RSYALDEMRAISNRAEH 410
Query: 424 WITDGGAPEEFKFALRADGSKA---ELSEPETKAIKTIRDSLLPKMD--EMDEKTFSTAL 478
WI + E A+ + + L E + K + + L D + E+ +S
Sbjct: 411 WIRN--FQSEKLMAVNQEKNTEFYNTLEERQKKWLVEVCKILRSNKDYSNIMEQFYSICY 468
Query: 479 YDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERL 521
++ K KQ+F+ +Y+ ++S+ GPR+ + +G E+
Sbjct: 469 HENKKIMKENQKQLFIIIYKLIMSQSSGPRIPLLIHVVGIEKF 511
>gi|52142901|ref|YP_083929.1| lysine--tRNA ligase, class I (lysyl-tRNA synthetase, class I)
[Bacillus cereus E33L]
gi|51976370|gb|AAU17920.1| lysine--tRNA ligase, class I (lysyl-tRNA synthetase, class I)
[Bacillus cereus E33L]
Length = 517
Score = 305 bits (780), Expect = 6e-81, Method: Composition-based stats.
Identities = 178/535 (33%), Positives = 295/535 (55%), Gaps = 47/535 (8%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWA + A ++IR+ + + + CASGI+PSG+VH+GNFREI++ VVRAL+ GK RF
Sbjct: 1 MHWAYEVAHELIRKHPNKETFVCASGISPSGSVHIGNFREIVTTYFVVRALQDLGKKTRF 60
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+SWDDYD FRKVP N+ P KY+ P +PD + YA H E + E L G
Sbjct: 61 IFSWDDYDRFRKVPKNI-NPS-FAKYIGMPYCDIPDPYGCHNFYAEHFEKEFEESLQVFG 118
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR--DESHKITEEYWPVSVFCTA 185
I E++YQ Y+ G Y + + +AL R+E+ DIL +++ + S + E ++PV+++C
Sbjct: 119 IEVEFIYQHAEYRSGRYNKNILEALYKRKEIYDILMSFKTGECSEEEREGFYPVTLYCEK 178
Query: 186 CNKDTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
C KD T I +D T++Y CECG+ L + +KL W++DWPMRW E VFEP
Sbjct: 179 CGKDATTITHFDEVLKTVRYECECGNQTELSVLNTNKMKLNWKIDWPMRWMIEDVVFEPG 238
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
G+DH S+ GS++ + ++ +I+N AP YDFIG+KG KM+SS G ++ +E+L+V
Sbjct: 239 GRDHSSETGSYNVSKEIARKIFNREAPHYIAYDFIGIKGHHEKMSSSSGNSITPSELLKV 298
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE------ 358
Y PEV ++FA RP+ F I D DVI+ Y +Y++ + +++ + KN++ F+
Sbjct: 299 YLPEVILFMFAKYRPDAAFHIGLDEDVIRNYTEYERLKD-SYENKMLKNEDLFDAIKLSR 357
Query: 359 -----KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR 413
KEY + +Q+ G +P LL +S ++ +++ + + +D
Sbjct: 358 AESGFKEYP--KFNQVAGT-------LP------LLHFDSFILQGILEKID--RSYALDE 400
Query: 414 LRTRAECAWNWI--------TDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPK 465
+R+ + A WI + + +F D S+ E + ++ +D
Sbjct: 401 MRSISNRAEYWIRKFRSEKLIEVNQEKNTEFYNTLDKSQKEWLVEVCEVLRLNKD----- 455
Query: 466 MDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
+ E+ +S ++ K KQ+F +Y ++++ GPR++ + +G E+
Sbjct: 456 YSNIMEQLYSICHHENKKIMKENQKQLFTIIYMLIINQSNGPRISLLIHVVGIEK 510
>gi|30020663|ref|NP_832294.1| Class 1 lysyl-tRNA synthetase [Bacillus cereus ATCC 14579]
gi|29896215|gb|AAP09495.1| Class 1 lysyl-tRNA synthetase [Bacillus cereus ATCC 14579]
Length = 517
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 172/527 (32%), Positives = 290/527 (55%), Gaps = 33/527 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWA + A ++IR+ + +++ CASGI+PSG+VH+GNFREI++ VVRAL+ GK RF
Sbjct: 1 MHWAYEVAHELIRKHPNKEMFVCASGISPSGSVHIGNFREIVTTYFVVRALQDLGKKTRF 60
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+SWDDYD FRKVP N+ KY+ P +PD + +YA H E + E L G
Sbjct: 61 IFSWDDYDRFRKVPKNIDPS--FAKYIGMPYCDIPDPYGCHNSYAEHFEKEFEKSLQAFG 118
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEE--YWPVSVFCTA 185
I E++YQ + Y+ G Y + + +AL R+E+ DIL ++ E ++P +++C
Sbjct: 119 IEVEFIYQHDEYRSGRYNKNILEALYKRKEIYDILMGFKTRECSEEERESFYPATLYCER 178
Query: 186 CNKDTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
C KDTT I +D T++Y CECG+ + L + +KL W++DWPMRW E +FEP
Sbjct: 179 CGKDTTTITHFDEVLKTVRYECECGNEKELSVLNTNKMKLNWKIDWPMRWMIEDVIFEPG 238
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
G+DH S+ GS++ + ++ +I+N P YDFIG+KG KM+SS G ++ + +L+V
Sbjct: 239 GRDHSSETGSYNVSKEIARKIFNREVPHYVAYDFIGIKGNHEKMSSSSGNSITPSNLLKV 298
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
Y PEV ++FA +P F I D DVI+ Y +Y++ + +++ + KN++ F+
Sbjct: 299 YIPEVILFMFAKYKPGAAFHIGLDEDVIRNYTEYERLKD-SYENKTLKNEDLFDAIKISR 357
Query: 365 ELSQIDGMPEC--ISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAW 422
S+I P+ ++ +P LL +S ++ ++K + + +D +R + A
Sbjct: 358 VDSEIKEYPKFNQVAGTLP------LLNFDSTILQGILKKID--RSYALDEMRAISNRAE 409
Query: 423 NWITDGGAPE----------EFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEK 472
WI + + + EF + L D + E K +++ +D + E+
Sbjct: 410 YWIRNFQSEKLIAVNEEKNAEFYYTL--DERQKEWLVEVCKILRSNKD-----YSNLMEQ 462
Query: 473 TFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ ++ K KQ+F +Y+ ++++ GPR+ + +G E
Sbjct: 463 LYGICHHENKKIMKENQKQLFTIIYKLIMNQSNGPRIPLLIHVVGIE 509
>gi|28493029|ref|NP_787190.1| lysyl-tRNA synthetase [Tropheryma whipplei str. Twist]
gi|28572242|ref|NP_789022.1| lysyl-tRNA synthetase [Tropheryma whipplei TW08/27]
gi|28410373|emb|CAD66759.1| lysyl-tRNA synthetase [Tropheryma whipplei TW08/27]
gi|28476069|gb|AAO44159.1| lysyl-tRNA synthetase [Tropheryma whipplei str. Twist]
Length = 545
Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats.
Identities = 167/543 (30%), Positives = 278/543 (51%), Gaps = 61/543 (11%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIY 69
W + AE++I+ER ASGI+PSG +H+GN RE+I+ + + SRG + I
Sbjct: 19 WVSKLAEQVIQERKGDKKIVVASGISPSGQIHLGNLREVITGHFIADEISSRGFDCEHIL 78
Query: 70 SWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDEN-YARHHEHDVEAVLPRVGI 128
SWDD+D RKVPAN+ K E+Y+ P+ VP +N ++ H D E + +GI
Sbjct: 79 SWDDFDRLRKVPANIDKG--YEQYIGMPLCDVPPPAGSKKNSWSEHFRGDFEKTMEILGI 136
Query: 129 HPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITE---EYWPVSVFCTA 185
++ Q++ Y+ G Y + AL+ R E+++I+ Y+ + + E EY+P V+CT
Sbjct: 137 KVRHISQSQMYRSGAYTHNILLALEKRHEIQNIIGKYQSKKTQPAESPREYYPYVVYCTR 196
Query: 186 CNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
C KD T+IE + G L YSC+CGH E + + + + KL W+VDWPMRW +E FEP G
Sbjct: 197 CKKDLTQIEDFAGS-ELSYSCKCGHSETIGIGEFNNGKLPWKVDWPMRWMYESVDFEPGG 255
Query: 246 KDHHSQG-GSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
DH S G S +S ++++I+NW P++ Y F+G++G KM+SS G V++ + L V
Sbjct: 256 VDHCSPGSASLSASSDIANQIFNWTPPLTVMYSFVGVQG-HAKMSSSTGNVLTPNDALSV 314
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKA----KNDETFEKE 360
+P + R+++A +PN F + FD + ++Y+++D E A + T K
Sbjct: 315 MEPTLLRWMYARRKPNQSFTVGFDQSLQRLYDEWDSLPNDLTGCELASSYTRAMSTTNKR 374
Query: 361 YRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKP--AQVDRLRTRA 418
+ PE + I FR L +L+ I++ D +++ + +++P + +L R
Sbjct: 375 F---------NAPEIL---ISFRTLVSLIDISASDDSQLLRMVKNLRPDIRSLAQLEPRL 422
Query: 419 ECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKT----IRDSLLPKMDEMDE--- 471
CA + P L P + + T +R+ L +D +D+
Sbjct: 423 SCARIYSKKFSNPIHV------------LQTPNKQVLHTAAPNVREMLRIFIDGLDKNWS 470
Query: 472 -KTFSTALY--------------DAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTI 516
+ +T Y D ++E K+ F +YQ ++ +D+GPRL + I
Sbjct: 471 IEKLTTLAYGVPKVVLGIDQSSKDVSQEVKNLQKEFFRTIYQLVIGQDKGPRLPTLLMAI 530
Query: 517 GKE 519
GK+
Sbjct: 531 GKQ 533
>gi|124484944|ref|YP_001029560.1| hypothetical protein Mlab_0116 [Methanocorpusculum labreanum Z]
gi|124362485|gb|ABN06293.1| lysyl-tRNA synthetase [Methanocorpusculum labreanum Z]
Length = 505
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 171/498 (34%), Positives = 269/498 (54%), Gaps = 32/498 (6%)
Query: 31 ASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
A+GITPSG +H+GN RE+++ D++ +AL RG +Y DD+D RKV + +
Sbjct: 28 ATGITPSGPIHLGNMREVMTGDMIYKALLKRGIEAELVYIADDFDPLRKVYPFLS--DEY 85
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+KY+ +P++ +P + ++YA H + + + IHP + +E Y+ GM+ E +K+
Sbjct: 86 QKYIGWPVSDIPCPCGKHKSYAEHFLDPFLSAIEELDIHPRIIRTSEAYRSGMFTEQIKQ 145
Query: 151 ALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNK-DTTKIESWD-GDWTLKYSCEC 208
AL + E++K+IL R K+ E + P C++C I S D + T+ Y C C
Sbjct: 146 ALVHAEDIKEILE--RVSGRKLEEGWTPYYPICSSCGTISRAAILSHDIENHTVTYKCSC 203
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
GH D K + KL WRVDWPMRW+ EP GKDH S GGS+DT +++ IY +
Sbjct: 204 GHEGVSDYSKGEG-KLVWRVDWPMRWSVHGVTVEPFGKDHASPGGSYDTGKIITKEIYGY 262
Query: 269 PAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFD 328
APV Y++I LKG G+M SSKG V+++ ++L+V PEV RYL A T+P+
Sbjct: 263 NAPVPVTYEWISLKG-KGEMHSSKGVVLTIRDMLDVVPPEVLRYLIAKTKPDKTIAFDPG 321
Query: 329 LDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNL 388
+ ++++ ++YDK + E R YELS+I P+ IPFRH+ +
Sbjct: 322 MGLLRLIDEYDKAAVVG--------------ESREYELSRI-ASPQT---TIPFRHMVTV 363
Query: 389 LQINSGDIEAVIKGLPDVKPAQVDR--LRTRAECAWNWITDGGAPEEFKFALRADGSKAE 446
+QI D +A+ L VD+ + +A A W+ + APE+ KFA+ +
Sbjct: 364 VQIARTD-DAIFDILKRSGYEIVDKEAVLDQANRAKVWL-ERYAPEDAKFAVAESLPEVA 421
Query: 447 LSE-PETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQ 505
+E PE KA ++ E A+YDAA+ G+ K++F +Y+A + D+
Sbjct: 422 ANEKPEVKAAVVAYAKIVTDA-EWKADVLHNAVYDAAQATGVTGKEVFTGIYRAFLGADR 480
Query: 506 GPRLAGFMKTIGKERLEK 523
GPRL F++ +G+E K
Sbjct: 481 GPRLGWFLEALGREETLK 498
>gi|84489076|ref|YP_447308.1| LysS [Methanosphaera stadtmanae DSM 3091]
gi|84372395|gb|ABC56665.1| LysS [Methanosphaera stadtmanae DSM 3091]
Length = 529
Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats.
Identities = 172/535 (32%), Positives = 283/535 (52%), Gaps = 29/535 (5%)
Query: 9 HWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFI 68
HW ++ AE++ +++ D Y SG + SG+VH+GN +I + V + LR G+N + +
Sbjct: 4 HWTERIAEELSQQKKD--EYIIGSGTSISGSVHIGNSCDIFIANAVSKELRKIGENAKTV 61
Query: 69 YSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHD-VEAVLPRVG 127
+ DDYD RKVP P PE KYL P +P EN+ H + V ++ P
Sbjct: 62 WIADDYDPLRKVP--YPLPENYSKYLGQPYYEIPCPEGCCENFVEHFQKPFVNSLKPFDI 119
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E A+ Y+ G+Y E K AL+N E +++I N YR+ H ++E++ P + C+ C
Sbjct: 120 ENLEIKSGAQMYKNGVYTEATKVALENTERIREIFNEYRE--HPLSEDWLPYNAICSECG 177
Query: 188 K-DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGK 246
+ +TT ++G +KY C+CGH +D KL WRV+W RW EP GK
Sbjct: 178 RVNTTHAYDFEGT-NIKYKCDCGHEGEVDYTTGMG-KLTWRVEWAARWKILNITCEPFGK 235
Query: 247 DHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQ 306
DH + GGS+D + ++SD I+N+PAP Y++I L G M+ SKG S L++ +
Sbjct: 236 DHAASGGSYDVSKIISDEIFNYPAPYPVPYEWITLDG--DAMSKSKGVFFSPEAWLKIGK 293
Query: 307 PEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYEL 366
PE Y +P + + + + + YD+ ERIA+ E+A N++ EK +IYE+
Sbjct: 294 PETLNYYIFRNKPLKPKDFTPKMGFLDLMDQYDRVERIAYGQEEASNEKEKEKLTKIYEV 353
Query: 367 SQIDGMPECISYQIPFRHLCNLLQINSGD---IEAVIKG---LP---------DVKPAQV 411
SQI+ MP+ + +Q +R L QI +G+ I ++K LP D+
Sbjct: 354 SQINDMPDEMPFQPSYRFLTVAYQIANGNANKIYTILKNNNQLPERLENVTFEDLSEFDR 413
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDE 471
D R E NW+ G P+ KF + + E+++ + + +K I + L + E D
Sbjct: 414 DTFLQRIEYVHNWLETYG-PKFVKFQVMNKMPRIEITDEQKEFLKQIANILESETFENDV 472
Query: 472 KTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFK 526
+ F +Y+ + G++P++ F A+Y+ ++ K QGPR A F+ ++ K+ + K F+
Sbjct: 473 Q-FHDRMYEVLESLGMKPQKAFQAIYKTIIGKKQGPRAASFVLSLDKDFVIKRFR 526
>gi|2128365|pir||C64367 hypothetical protein MJ0539 - Methanococcus jannaschii
Length = 534
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 178/537 (33%), Positives = 279/537 (51%), Gaps = 36/537 (6%)
Query: 5 KKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN 64
++++HWAD AEK+I ER D Y ASGITPSG +HVGN RE ++ D + + L ++G
Sbjct: 2 REIMHWADVIAEKLIEER-KADKYIVASGITPSGHIHVGNARETLTADAIYKGLINKGVE 60
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
I+ D YD RK+ +PK E+Y+ P++ +P E+YA H L
Sbjct: 61 AELIFIADTYDPLRKLYPFLPKE--FEQYIGMPLSEIPCPEGCCESYAEHFLRPYLESLD 118
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCT 184
+G+ E Y+KG+Y E +K ALDNRE++ +ILN +R ++ + +++WP+++ C
Sbjct: 119 DLGVELTTYRADENYKKGLYDEKIKIALDNREKIMEILNKFR--ANPLPDDWWPINIVCE 176
Query: 185 ACNKDTTKIESWDGD-WTLKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFE 242
C K TK+ +D + + Y CE CG + K ++ KL WRVDWP RW+ E
Sbjct: 177 NCGKLKTKVIKYDSEKEEITYRCEICGFENTVKPYKGRA-KLPWRVDWPARWSIFNVTIE 235
Query: 243 PAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSL 298
P GKDH + GGS+DT L++ IYN+ P Y++I L K +P M+SSKG V ++
Sbjct: 236 PMGKDHAAAGGSYDTGVLIAKEIYNYIPPKKVVYEWIQLKVGDKAIP--MSSSKGVVFAV 293
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAW-KAEKAKNDET 356
+ + PE+ R+L ++P I FDL I + ++YD+ E + +K + E
Sbjct: 294 KDWTNIAHPEILRFLLLRSKPTKH--IDFDLKKIPDLVDEYDRLEDFYFNNKDKDELSEE 351
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLL----------QINSGDIEAVIK----G 402
+++ RIYELS +PE + IP+R C+++ IN + +++
Sbjct: 352 EQEKIRIYELST-PKIPETKPFVIPYR-FCSIIAQLTYDEEKEDINMERVFEILRRNNYS 409
Query: 403 LPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL 462
+ D+ + +L+ R A NW G A +L + + + IK + L
Sbjct: 410 IDDIDEFSMKKLKDRLLMARNWALKYGEKLVIISEDEAKEIYEKLKDKQKEWIKYFAEKL 469
Query: 463 LPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
K E D +Y AKE GL P+ F A Y L+ K GP+L F+ T+GK+
Sbjct: 470 --KTAEFDALNLHELIYQTAKELGLNPRDAFQASYMILLGKKYGPKLGAFLATLGKD 524
>gi|15668719|ref|NP_247518.1| tRNA synthetase, putative [Methanocaldococcus jannaschii DSM 2661]
gi|3183557|sp|Q57959|SYK_METJA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|2826296|gb|AAB98532.1| tRNA synthetase, putative [Methanocaldococcus jannaschii DSM 2661]
Length = 530
Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats.
Identities = 178/534 (33%), Positives = 276/534 (51%), Gaps = 36/534 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD AEK+I ER D Y ASGITPSG +HVGN RE ++ D + + L ++G
Sbjct: 1 MHWADVIAEKLIEER-KADKYIVASGITPSGHIHVGNARETLTADAIYKGLINKGVEAEL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ D YD RK+ +PK E+Y+ P++ +P E+YA H L +G
Sbjct: 60 IFIADTYDPLRKLYPFLPKE--FEQYIGMPLSEIPCPEGCCESYAEHFLRPYLESLDDLG 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+KG+Y E +K ALDNRE++ +ILN +R ++ + +++WP+++ C C
Sbjct: 118 VELTTYRADENYKKGLYDEKIKIALDNREKIMEILNKFR--ANPLPDDWWPINIVCENCG 175
Query: 188 KDTTKIESWDGD-WTLKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TK+ +D + + Y CE CG + K ++ KL WRVDWP RW+ EP G
Sbjct: 176 KLKTKVIKYDSEKEEITYRCEICGFENTVKPYKGRA-KLPWRVDWPARWSIFNVTIEPMG 234
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT L++ IYN+ P Y++I L K +P M+SSKG V ++ +
Sbjct: 235 KDHAAAGGSYDTGVLIAKEIYNYIPPKKVVYEWIQLKVGDKAIP--MSSSKGVVFAVKDW 292
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAW-KAEKAKNDETFEK 359
+ PE+ R+L ++P I FDL I + ++YD+ E + +K + E ++
Sbjct: 293 TNIAHPEILRFLLLRSKPTKH--IDFDLKKIPDLVDEYDRLEDFYFNNKDKDELSEEEQE 350
Query: 360 EYRIYELSQIDGMPECISYQIPFRHLCNLL----------QINSGDIEAVIK----GLPD 405
+ RIYELS +PE + IP+R C+++ IN + +++ + D
Sbjct: 351 KIRIYELST-PKIPETKPFVIPYR-FCSIIAQLTYDEEKEDINMERVFEILRRNNYSIDD 408
Query: 406 VKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPK 465
+ + +L+ R A NW G A +L + + + IK + L K
Sbjct: 409 IDEFSMKKLKDRLLMARNWALKYGEKLVIISEDEAKEIYEKLKDKQKEWIKYFAEKL--K 466
Query: 466 MDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
E D +Y AKE GL P+ F A Y L+ K GP+L F+ T+GK+
Sbjct: 467 TAEFDALNLHELIYQTAKELGLNPRDAFQASYMILLGKKYGPKLGAFLATLGKD 520
>gi|150399380|ref|YP_001323147.1| lysyl-tRNA synthetase [Methanococcus vannielii SB]
gi|150012083|gb|ABR54535.1| lysyl-tRNA synthetase [Methanococcus vannielii SB]
Length = 533
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 178/536 (33%), Positives = 283/536 (52%), Gaps = 37/536 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD TAEKI+++R +++ Y +SGITPSG +H+GN RE ++ D V + L + G +
Sbjct: 1 MHWADATAEKIMKKR-NVEKYVVSSGITPSGHIHIGNARETLTADAVHKGLLNNGLESKL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ DDYD RK+ + + EKY+ P++ +P E+YA H L +G
Sbjct: 60 IFVADDYDPLRKLYPFLTQD--FEKYIGMPLSEIPCPEGCCESYADHFLKPFLNSLNGLG 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+ GMY E + KAL+NR ++K+IL++YR E + ++++P+++ C C
Sbjct: 118 VELTTYRANECYKAGMYNEVIIKALENRLKIKEILDSYRKEP--LADDWYPLNIVCEKCG 175
Query: 188 K-DTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K + +K+ ++ D T+ Y C+CG ++ KL WRVDWP RW EP G
Sbjct: 176 KMNQSKVVAYKSEDKTVTYVCKCGFENTVNPFNGIG-KLPWRVDWPARWGIFGVTVEPMG 234
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLK----GVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT ++ +IY + AP Y++I LK +P M+SS G V ++ +
Sbjct: 235 KDHAASGGSYDTGIKIARQIYEYIAPEKIVYEWIQLKVGDRAMP--MSSSAGVVFAVKDW 292
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTER----IAWKAEKAKNDET 356
E+ PEV R+L +P I FDL + + +DYD+ ER + K E +E
Sbjct: 293 NEICHPEVLRFLILRGKPTKH--IDFDLKAVSNLVDDYDELERKYFELVEKKETESLNEN 350
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAV--IKGLPDVKP 408
E++ RIYE + + +PE + Q+P+R + QI + DIE V I G P
Sbjct: 351 EEEKLRIYEYTTPN-IPEKLPLQVPYRFASIIAQIAWNDEKQTIDIERVLDILGRNGYMP 409
Query: 409 AQ-----VDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
++ + RL TR + + W +D G E +A LSE + + + ++L
Sbjct: 410 SKFSEYDIKRLETRLKMSKKWASDYGENLEILGLEKAKEQFEILSENQKEWLTEFANNL- 468
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
E D +Y++A + GLEPK F A Y L+ K+ GP+L F+ + K+
Sbjct: 469 -NEIEPDASVIHELMYESAIKLGLEPKDAFTASYNLLLGKNYGPKLGSFLAALKKD 523
>gi|21227798|ref|NP_633720.1| lysyl-tRNA synthetase [Methanosarcina mazei Go1]
gi|20906206|gb|AAM31392.1| Lysyl-tRNA synthetase [Methanosarcina mazei Go1]
Length = 540
Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 181/553 (32%), Positives = 278/553 (50%), Gaps = 49/553 (8%)
Query: 1 MSNEKKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS 60
M N +HWAD AE ++ + G + A+GITPSG +H+GN RE+++ D RAL
Sbjct: 1 MINMADTIHWADVIAEDVLNKSGK---HLVATGITPSGHIHIGNMREVVTADAAYRALLD 57
Query: 61 RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
RG + RFIY D++D RKV + PE +++ PI+ VP NY+ H
Sbjct: 58 RGADARFIYIADNFDPLRKVYPFL--PESYAEHVGKPISEVPCPCGECANYSEHFLKPFL 115
Query: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVS 180
L R+GI+PE E Y+ GMY E +K AL R E+ IL ++ + EE+ P +
Sbjct: 116 EALRRLGINPEVYRADEMYRAGMYTEAIKTALVKRNEIAKILEEVSGKT--VAEEWSPFN 173
Query: 181 VFCTACNK-DTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEK 238
C C K TTK+ +D D T+ Y C CGH + + A KL WRVDWP RWA
Sbjct: 174 PRCNECGKITTTKVTGFDPDAETVDYVCACGHSGTVPM--AGGGKLTWRVDWPARWAVLG 231
Query: 239 TVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSL 298
EP GKDH S+GGS+DT + IY P Y++I L G G M+SS G VVS+
Sbjct: 232 VTVEPFGKDHASRGGSYDTGKRIVREIYGHEPPFPIVYEWIML-GKQGAMSSSTGVVVSI 290
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETF- 357
+++LEV PEV RYL T+P ++ I ++Y++ + + ND +
Sbjct: 291 SDMLEVVPPEVLRYLIIRTKPEKHIQFDPAQPLLTIVDEYERL-----REKFRDNDPSMG 345
Query: 358 EKEYRIYELSQIDGM--PECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR-- 413
E E RIYELS+ G+ PE IPF+ + + Q+ G+ E +++ + + D
Sbjct: 346 EFEKRIYELSRATGICHPE-----IPFKQMVTIFQVARGNFEQILQIVKRSGFSTEDEKC 400
Query: 414 LRTRAECAWNWITDGGAPEEFKFALRAD--GSKAELSEPETKAIKTIRDSLLPKMDEMDE 471
+R + W+ + AP KF+++ + A LSE + + D L+ ++
Sbjct: 401 IRELVDNVSKWL-ELYAPPFAKFSVKENVPVQVATLSELQKAFLGAFAD-LIESKGKISG 458
Query: 472 KTFSTALYDAAKECGLE-----------------PKQMFVAVYQALVSKDQGPRLAGFMK 514
+ + +Y +AKE G E PK +F A+Y +++ + GP+ F+
Sbjct: 459 EEYHMLVY-SAKEKGSELNRLIAEKLNVPAPQVDPKDLFKAIYTSILGQSSGPKAGWFLS 517
Query: 515 TIGKERLEKIFKD 527
+ ++ L F++
Sbjct: 518 SFEEDFLINRFRE 530
>gi|24418702|sp|Q8PWA0|SYK1_METMA Lysyl-tRNA synthetase 1 (Lysine--tRNA ligase 1) (LysRS 1)
Length = 537
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 179/546 (32%), Positives = 276/546 (50%), Gaps = 49/546 (8%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD AE ++ + G + A+GITPSG +H+GN RE+++ D RAL RG + RF
Sbjct: 5 IHWADVIAEDVLNKSGK---HLVATGITPSGHIHIGNMREVVTADAAYRALLDRGADARF 61
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY D++D RKV + PE +++ PI+ VP NY+ H L R+G
Sbjct: 62 IYIADNFDPLRKVYPFL--PESYAEHVGKPISEVPCPCGECANYSEHFLKPFLEALRRLG 119
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I+PE E Y+ GMY E +K AL R E+ IL ++ + EE+ P + C C
Sbjct: 120 INPEVYRADEMYRAGMYTEAIKTALVKRNEIAKILEEVSGKT--VAEEWSPFNPRCNECG 177
Query: 188 K-DTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TTK+ +D D T+ Y C CGH + + A KL WRVDWP RWA EP G
Sbjct: 178 KITTTKVTGFDPDAETVDYVCACGHSGTVPM--AGGGKLTWRVDWPARWAVLGVTVEPFG 235
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDH S+GGS+DT + IY P Y++I L G G M+SS G VVS++++LEV
Sbjct: 236 KDHASRGGSYDTGKRIVREIYGHEPPFPIVYEWIML-GKQGAMSSSTGVVVSISDMLEVV 294
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETF-EKEYRIY 364
PEV RYL T+P ++ I ++Y++ + + ND + E E RIY
Sbjct: 295 PPEVLRYLIIRTKPEKHIQFDPAQPLLTIVDEYERL-----REKFRDNDPSMGEFEKRIY 349
Query: 365 ELSQIDGM--PECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR--LRTRAEC 420
ELS+ G+ PE IPF+ + + Q+ G+ E +++ + + D +R +
Sbjct: 350 ELSRATGICHPE-----IPFKQMVTIFQVARGNFEQILQIVKRSGFSTEDEKCIRELVDN 404
Query: 421 AWNWITDGGAPEEFKFALRAD--GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTAL 478
W+ + AP KF+++ + A LSE + + D L+ ++ + + +
Sbjct: 405 VSKWL-ELYAPPFAKFSVKENVPVQVATLSELQKAFLGAFAD-LIESKGKISGEEYHMLV 462
Query: 479 YDAAKECGLE-----------------PKQMFVAVYQALVSKDQGPRLAGFMKTIGKERL 521
Y +AKE G E PK +F A+Y +++ + GP+ F+ + ++ L
Sbjct: 463 Y-SAKEKGSELNRLIAEKLNVPAPQVDPKDLFKAIYTSILGQSSGPKAGWFLSSFEEDFL 521
Query: 522 EKIFKD 527
F++
Sbjct: 522 INRFRE 527
>gi|2645489|gb|AAB87410.1| lysyl-tRNA synthetase [Methanococcus maripaludis]
Length = 533
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 178/536 (33%), Positives = 277/536 (51%), Gaps = 37/536 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD T+EKI+++R + + Y +SGITPSG +H+GN RE ++ D V + + +G +
Sbjct: 1 MHWADATSEKIMKKR-NAEEYVVSSGITPSGHIHIGNARETLTADAVYKGMLKKGAEAKL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ DDYD RK+ +PK EKY+ P++ +P ++YA H L +G
Sbjct: 60 IFIADDYDPLRKLYPFLPKE--FEKYIGMPLSEIPCPQGCCKSYADHFLMPFLNSLEDLG 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+ GMY E + AL+NR ++K++L++YR E + + ++P++V C C
Sbjct: 118 VEITTHRANECYKAGMYNEAIITALENRLKIKELLDSYRKEP--LADNWYPLNVVCEKCG 175
Query: 188 K-DTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TK+ S++ D T+ Y C+CG + KL WRVDWP RW EP G
Sbjct: 176 KMHETKVTSYNSEDKTITYVCKCGFENTVQPFNGIG-KLPWRVDWPARWNIFGVTAEPMG 234
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT ++ +I+N+ AP Y++I L K +P M+SS G V ++ +
Sbjct: 235 KDHAASGGSYDTGIKIARQIFNYQAPEKMVYEWIQLKIGDKAMP--MSSSSGVVFAVKDW 292
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAWK-AEKAKNDETFEK 359
E+ PEV R+L +P I FDL I + +DYD+ ER ++ EK K +E +
Sbjct: 293 TEICHPEVLRFLILKGKPTKH--IDFDLKAISNLVDDYDELERKYFELIEKQKTEELNDN 350
Query: 360 E---YRIYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAV--IKGLPDVKP 408
E +YEL +PE + Q+ +R + QI D+E V I G P
Sbjct: 351 ENEKISLYELVT-PKIPERLPLQVAYRFCSIIAQIALDKETQKIDMERVFDILGRNGYNP 409
Query: 409 AQV-----DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
A+ RL R + W +D G E +A LSE + +K +
Sbjct: 410 AEFSEYDKSRLEKRLYMSKKWASDYGENLEINDFEQAKEQYETLSEEQKAWLKAFSKEV- 468
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ E+D T +Y+ A + L PK+ FVA Y+ L+ K+ GP+L F+ ++ KE
Sbjct: 469 -ENIEIDANTIHELMYETATKLNLAPKEAFVASYKILLGKNYGPKLGSFLASLKKE 523
>gi|20089423|ref|NP_615498.1| lysyl-tRNA synthetase [Methanosarcina acetivorans C2A]
gi|24418703|sp|Q8TTA3|SYK1_METAC Lysyl-tRNA synthetase 1 (Lysine--tRNA ligase 1) (LysRS 1)
gi|19914323|gb|AAM03978.1| lysyl-tRNA synthetase [Methanosarcina acetivorans C2A]
Length = 533
Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats.
Identities = 175/543 (32%), Positives = 269/543 (49%), Gaps = 43/543 (7%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD AE ++ + G + A+GITPSG +H+GN RE+++ D RAL G + R
Sbjct: 1 MHWADVIAEDVLNKSGK---HLVATGITPSGHIHIGNMREVVTADAAYRALLDMGADARL 57
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY D+YD RKV +P E +++ PI+ VP NYA H L R+G
Sbjct: 58 IYIADNYDPLRKVYPFLP--ESYAEHVGKPISEVPCPCGDCANYAEHFLKPFIEALRRLG 115
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I+PE L E Y+ G+Y E +K AL R+E+ IL ++ + E++ P + C C
Sbjct: 116 INPEVLRADEMYRAGLYTEAIKTALAKRDEIAKILEEVSGKT--VAEDWSPFNPRCNECG 173
Query: 188 K-DTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TTK+ +D + T+ Y C CGH + + A KL WRVDWP RWA EP G
Sbjct: 174 KITTTKVAGFDLEAETVDYVCACGHSGTVPM--AGGGKLTWRVDWPARWAVLGVTVEPFG 231
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDH S+GGS+DT + IY P Y++I L G G M+SS G VVS++++LEV
Sbjct: 232 KDHASKGGSYDTGKRIVREIYGHEPPFPIVYEWIML-GKRGAMSSSTGVVVSISDMLEVV 290
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PEV RYL T+P ++ + ++Y++ + + + D FEK RIYE
Sbjct: 291 PPEVLRYLIIRTKPEKHIQFDPGQPLLNLVDEYERLRDKFRENDPSLGD--FEK--RIYE 346
Query: 366 LSQIDGM--PECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR--LRTRAECA 421
LS+ G+ PE IPF+ + + Q+ GD E V+K + + + +R A+
Sbjct: 347 LSRATGICHPE-----IPFKQMVTIYQVARGDFEQVLKIVKRSGFSTENEKCIRELADNV 401
Query: 422 WNWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD 480
W+ P +F + A LSE + + D L+ ++ + + +Y
Sbjct: 402 SRWLELYAPPFAKFSVKEKVPVQTATLSELQKAFLGAFAD-LIETKGKISGEEYHMLVYS 460
Query: 481 AAKECG----------------LEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKI 524
A E ++PK +F A+Y +++ + GP+ F+ + K L
Sbjct: 461 AKDEGSELNRLIAQKVNVPVPQVDPKDLFKAIYTSILGQSSGPKAGWFLSSFEKGFLITR 520
Query: 525 FKD 527
F++
Sbjct: 521 FRE 523
>gi|73669025|ref|YP_305040.1| lysyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
gi|90103016|sp|Q46CD2|SYK_METBF Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|72396187|gb|AAZ70460.1| lysyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
Length = 537
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 169/544 (31%), Positives = 279/544 (51%), Gaps = 45/544 (8%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD AE ++++ G + A+GITPSG +H+GN RE+++ D V RAL ++G N F
Sbjct: 5 IHWADVIAEDVLKKSGK---HLVATGITPSGNIHIGNMREVVTADAVYRALSNKGANADF 61
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY D+YD RKV +P+ V +++ PI+ +P NYA H L R+G
Sbjct: 62 IYIADNYDPLRKVYPFLPESYV--EHVGKPISEIPCPCGNCANYAEHFLKPFLEALRRLG 119
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I+P+ E Y+ G Y E +K AL R+ + IL ++ + ++ P + C C
Sbjct: 120 INPQVYRADEMYKTGKYTEAIKTALVKRDAIAKILEEVSGKT--VAADWSPFNPRCNQCG 177
Query: 188 K-DTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TTK+ +D + T+ Y C CGH + + A KL WRVDWP RW+ EP G
Sbjct: 178 KITTTKVTGFDLEAETVDYVCACGHSGIVPM--AGGGKLTWRVDWPARWSVLGVTVEPFG 235
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDH S+GGS+DT + I+ P Y++I L G G M+SS G V+S++++LE+
Sbjct: 236 KDHASKGGSYDTGKRIVREIFGHEPPYPIVYEWIML-GKQGAMSSSTGVVISISDMLEII 294
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDE---TFEKEYR 362
PEV RYL T+P ++ + ++Y++ + + +ND TF+K R
Sbjct: 295 PPEVLRYLIIRTKPEKHIQFDPGQPLLTLVDEYERL-----RTQFRENDPSLGTFQK--R 347
Query: 363 IYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR--LRTRAEC 420
+YELS+ G+ C S +IPF+ + + Q+ GD ++K + + D+ ++ A+
Sbjct: 348 VYELSRATGI--CQS-EIPFKQMVTIYQVARGDFAQILKIVKRSGFSTEDKKCIKELADN 404
Query: 421 AWNWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALY 479
W+ P +FK + A LSE + +A + +L+ E+ + + +Y
Sbjct: 405 VSKWLKLYAPPFAKFKVKEKVPVQAATLSELQ-RAFLSAFAALIESRGEISGEEYHMLVY 463
Query: 480 DAAKECG----------------LEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEK 523
A E ++P+++F A+Y +L+ + GP+ F+ + KE L +
Sbjct: 464 SAKDEGSELNRKIAEKLNTHAPQVDPRELFKAIYFSLLGQKSGPKAGWFLSSFDKEFLVE 523
Query: 524 IFKD 527
F++
Sbjct: 524 RFEE 527
>gi|45358881|ref|NP_988438.1| Lysyl-tRNA synthetase [Methanococcus maripaludis S2]
gi|45047747|emb|CAF30874.1| Lysyl-tRNA synthetase [Methanococcus maripaludis S2]
Length = 541
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 176/536 (32%), Positives = 278/536 (51%), Gaps = 37/536 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD T+EKI+++R + + Y +SGITPSG +H+GN RE ++ D V + + +G +
Sbjct: 9 MHWADATSEKIMKKR-NAEEYVVSSGITPSGHIHIGNARETLTADAVYKGMLKKGAEAKL 67
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ DDYD RK+ +PK EKY+ P++ +P ++YA H L +G
Sbjct: 68 IFIADDYDPLRKLYPFLPKE--FEKYIGMPLSEIPCPQGCCKSYADHFLMPFLNSLEDLG 125
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+ GMY + + AL+NR ++K++L++YR E + ++++P++V C C
Sbjct: 126 VEITTHRANECYKAGMYNDAIITALENRLKIKELLDSYRKEP--LADDWYPLNVVCEKCG 183
Query: 188 K-DTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TK+ +++ D T+ Y C+CG + KL WRVDWP RW EP G
Sbjct: 184 KMHETKVINYNSEDKTITYVCKCGFENTVKPFNGIG-KLPWRVDWPARWNIFGVTAEPMG 242
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT ++ +I+N+ AP Y++I L K +P M+SS G V ++ +
Sbjct: 243 KDHAASGGSYDTGIKIARQIFNYQAPEKMVYEWIQLKVGDKAMP--MSSSSGVVFAVKDW 300
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAWK-AEKAKNDETFEK 359
E+ PEV R+L +P I FDL I + +DYD+ ER ++ EK K +E +
Sbjct: 301 TEICHPEVLRFLILKGKPTKH--IDFDLKAISNLVDDYDELERKYFELIEKQKTEELNDN 358
Query: 360 E---YRIYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAV--IKGLPDVKP 408
E +YEL +PE + Q+ +R + QI D+E V I G P
Sbjct: 359 ENEKISLYELVT-PKIPERLPLQVAYRFCSIIAQIALDKETQKIDMERVFDILGRNGYNP 417
Query: 409 AQV-----DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
A+ RL R + W +D G E +A LSE + +K +
Sbjct: 418 AEFSEYDKSRLEKRLYMSKKWASDYGENLEINDLDQAKEQYETLSEEQKAWLKAFSKEV- 476
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ E+D T +Y+ A + L PK+ FVA Y+ L+ K+ GP+L F+ ++ KE
Sbjct: 477 -ENIEIDANTIHELMYETATKLNLAPKEAFVASYKILLGKNYGPKLGSFLASLKKE 531
>gi|46397784|sp|O30522|SYK_METMP Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 533
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 176/536 (32%), Positives = 278/536 (51%), Gaps = 37/536 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD T+EKI+++R + + Y +SGITPSG +H+GN RE ++ D V + + +G +
Sbjct: 1 MHWADATSEKIMKKR-NAEEYVVSSGITPSGHIHIGNARETLTADAVYKGMLKKGAEAKL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ DDYD RK+ +PK EKY+ P++ +P ++YA H L +G
Sbjct: 60 IFIADDYDPLRKLYPFLPKE--FEKYIGMPLSEIPCPQGCCKSYADHFLMPFLNSLEDLG 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+ GMY + + AL+NR ++K++L++YR E + ++++P++V C C
Sbjct: 118 VEITTHRANECYKAGMYNDAIITALENRLKIKELLDSYRKEP--LADDWYPLNVVCEKCG 175
Query: 188 K-DTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TK+ +++ D T+ Y C+CG + KL WRVDWP RW EP G
Sbjct: 176 KMHETKVINYNSEDKTITYVCKCGFENTVKPFNGIG-KLPWRVDWPARWNIFGVTAEPMG 234
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT ++ +I+N+ AP Y++I L K +P M+SS G V ++ +
Sbjct: 235 KDHAASGGSYDTGIKIARQIFNYQAPEKMVYEWIQLKVGDKAMP--MSSSSGVVFAVKDW 292
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAWK-AEKAKNDETFEK 359
E+ PEV R+L +P I FDL I + +DYD+ ER ++ EK K +E +
Sbjct: 293 TEICHPEVLRFLILKGKPTKH--IDFDLKAISNLVDDYDELERKYFELIEKQKTEELNDN 350
Query: 360 E---YRIYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAV--IKGLPDVKP 408
E +YEL +PE + Q+ +R + QI D+E V I G P
Sbjct: 351 ENEKISLYELVT-PKIPERLPLQVAYRFCSIIAQIALDKETQKIDMERVFDILGRNGYNP 409
Query: 409 AQV-----DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
A+ RL R + W +D G E +A LSE + +K +
Sbjct: 410 AEFSEYDKSRLEKRLYMSKKWASDYGENLEINDLDQAKEQYETLSEEQKAWLKAFSKEV- 468
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ E+D T +Y+ A + L PK+ FVA Y+ L+ K+ GP+L F+ ++ KE
Sbjct: 469 -ENIEIDANTIHELMYETATKLNLAPKEAFVASYKILLGKNYGPKLGSFLASLKKE 523
>gi|134045320|ref|YP_001096806.1| lysyl-tRNA synthetase [Methanococcus maripaludis C5]
gi|132662945|gb|ABO34591.1| lysyl-tRNA synthetase [Methanococcus maripaludis C5]
Length = 533
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 176/536 (32%), Positives = 278/536 (51%), Gaps = 37/536 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD T+EKI+++R + D Y +SGITPSG +H+GN RE ++ D V + + +G +
Sbjct: 1 MHWADATSEKIMKKR-NADEYVVSSGITPSGHIHIGNARETLTADAVYKGIVKKGAKAKL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ DDYD RK+ +P+ EKY+ P++ +P ++YA H L +G
Sbjct: 60 IFVADDYDPLRKLYPFLPQE--FEKYIGMPLSEIPCPKGCCKSYADHFLMPFLNSLEELG 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+ GMY + + AL+NR ++K+IL++YR E + ++++P++V C C
Sbjct: 118 VDITTHRANECYKAGMYNDAIINALENRLKIKEILDSYRKEP--LADDWFPLNVVCEKCG 175
Query: 188 K-DTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TK+ +++ D T+ Y C+CG + KL WRVDWP RW EP G
Sbjct: 176 KMHETKVTAYNSEDKTITYVCKCGFENTVQPFNGVG-KLPWRVDWPARWGIFGVTAEPMG 234
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT ++ +IY + AP Y++I L K +P M+SS G V ++ +
Sbjct: 235 KDHAASGGSYDTGIKIARQIYGYQAPEKMVYEWIQLKIGDKAMP--MSSSSGVVFAVKDW 292
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAWK-AEKAKNDETFEK 359
E+ PE+ R+L +P I FDL I + +DYD+ ER ++ EK K +E +
Sbjct: 293 NEICHPEILRFLILKGKPTKH--IDFDLKAISNLVDDYDELERKYFELIEKQKIEELNDN 350
Query: 360 EYR---IYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAV--IKGLPDVKP 408
E +YEL +PE + Q+ +R + QI D+E V I G P
Sbjct: 351 ESEKISLYELVT-PKIPERLPLQVAYRFCSIIAQIALDKETQKIDMERVFDILGRNGYNP 409
Query: 409 AQV-----DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
A+ RL R + W +D G E +A LSE + +K + +
Sbjct: 410 AEFSEYDKSRLEKRLYMSKKWASDYGENLEINDLEQAKEQYETLSEEQKAWLKAFSEEV- 468
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ E+D T +Y+ A + L PK+ FVA Y+ L+ K+ GP+L F+ ++ KE
Sbjct: 469 -EQIEIDATTIHELMYETATKLELAPKEAFVASYKILLGKNYGPKLGSFLASLKKE 523
>gi|150402488|ref|YP_001329782.1| lysyl-tRNA synthetase [Methanococcus maripaludis C7]
gi|150033518|gb|ABR65631.1| lysyl-tRNA synthetase [Methanococcus maripaludis C7]
Length = 533
Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 178/536 (33%), Positives = 278/536 (51%), Gaps = 37/536 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD T+EKI+++R + + Y +SGITPSG +H+GN RE ++ D V + + G N +
Sbjct: 1 MHWADATSEKIMKKR-NANEYVVSSGITPSGHIHIGNARETLTADAVYKGIAKSGANAKL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I+ DDYD RK+ +P+ EKY+ P++ +P ++YA H L +G
Sbjct: 60 IFVADDYDPLRKLYPFLPQE--FEKYIGMPLSEIPCPEGCCKSYADHFLMPFLNSLDDLG 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ E Y+ GMY + + AL+NR ++K+IL++YR E + ++++P++V C C
Sbjct: 118 VDITTHRANECYKAGMYDDVIITALENRLKIKEILDSYRKEP--LADDWFPLNVVCEKCG 175
Query: 188 K-DTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K TK+ +++ D T+ Y C+CG + KL WRVDWP RW EP G
Sbjct: 176 KMHETKVTAYNSEDKTITYVCKCGFENTVQPFNGIG-KLPWRVDWPARWGIFGVTAEPMG 234
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLAEV 301
KDH + GGS+DT ++ +IYN+ AP Y++I L K +P M+SS G V ++ +
Sbjct: 235 KDHAASGGSYDTGIKIARQIYNYQAPEKMVYEWIQLKIGDKAMP--MSSSSGVVFAVKDW 292
Query: 302 LEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAWK-AEKAKNDETFEK 359
E+ PEV R+L +P I FDL I + +DYD+ ER ++ EK K +E +
Sbjct: 293 NEICHPEVLRFLILKGKPTKH--IDFDLKAISNLVDDYDELERKYFELIEKRKTEELNDS 350
Query: 360 E---YRIYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAV--IKGLPDVKP 408
E +YEL PE + Q+ +R + QI D+E V I G P
Sbjct: 351 EDEKISLYELVT-PKKPEKLPLQVAYRFCSIIAQIALDKETQEIDMERVFDILGRNGYNP 409
Query: 409 AQV-----DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
A+ RL R + W +D G E +A LSE + +K + +
Sbjct: 410 AEFSEYDKSRLEKRLYMSKKWASDYGENLEINDLEQAKEQYETLSEEQKAWLKLFAEEV- 468
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ E+D T +Y+ A + L PK+ FVA Y+ L+ K+ GP+L F+ ++ KE
Sbjct: 469 -EKIEIDATTVHELMYETATKLDLAPKEAFVASYKILLGKNYGPKLGSFLASLKKE 523
>gi|27805747|sp|Q9C4B7|SYK_METBA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|13540310|gb|AAK29405.1|AF337056_1 lysyl tRNA Synthetase [Methanosarcina barkeri]
Length = 537
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 166/542 (30%), Positives = 277/542 (51%), Gaps = 41/542 (7%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD AE ++++ G + A+GITPSG +H+GN RE+++ D V RAL +G N F
Sbjct: 5 IHWADVIAEDVLKKNGK---HLVATGITPSGNIHIGNMREVVTADAVYRALVDKGANADF 61
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY D+YD RKV +P+ V +++ PI+ +P NYA H L R+G
Sbjct: 62 IYIADNYDPLRKVYPFLPESYV--EHVGKPISEIPCPCGNCANYAEHFLKPFLEALRRLG 119
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I+P+ E Y+ G Y E +K AL R+ + IL ++ + ++ P + C C
Sbjct: 120 INPKVYRADEMYKTGKYTEAIKTALVKRDAIAKILEEVSGKT--VASDWSPFNPRCDQCG 177
Query: 188 K-DTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
+ TTK+ +D + T+ Y C C H + + A KL WRVDWP RW+ EP G
Sbjct: 178 RITTTKVTGFDLEAETVDYVCACEHSGTVPM--AGGGKLTWRVDWPARWSVLGVTVEPFG 235
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDH S+GGS+DT + I+ P Y++I L G G M+SS G VVS++++L++
Sbjct: 236 KDHASRGGSYDTGKRIVKEIFGHEPPYPIVYEWIML-GKQGAMSSSTGVVVSISDMLKIV 294
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEK-EYRIY 364
PEV RYL T+P ++ + ++Y++ + + +ND + + R+Y
Sbjct: 295 PPEVLRYLIIRTKPEKHIQFDPGQPLLSLVDEYERL-----RTQFRENDPSLGTFQGRVY 349
Query: 365 ELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR--LRTRAECAW 422
ELS+ G+ C S +IPF+ + + Q+ GD + V+K + + D+ ++ A+
Sbjct: 350 ELSRATGV--CQS-EIPFKQMVTIYQVARGDFDQVLKIVKRSGFSTEDKKCIKELADNVS 406
Query: 423 NWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDA 481
W+ P +FK + A LSE + +A + +L+ DE+ + + +Y A
Sbjct: 407 KWLKLYAPPFAKFKVKEKVPVQAATLSELQ-RAFLSAFAALIESRDEISGEEYHMLVYSA 465
Query: 482 AKECG----------------LEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIF 525
E ++P+++F A+Y +L+ + GP+ F+ + KE L + F
Sbjct: 466 KDEGSELNRRIAEKLNAHAPQVDPRELFKAIYISLLGQSSGPKAGWFLSSFEKEFLVERF 525
Query: 526 KD 527
++
Sbjct: 526 EE 527
>gi|15679538|ref|NP_276655.1| hypothetical protein MTH1542 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3183168|sp|O27585|SYK_METTH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|2622662|gb|AAB86016.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 544
Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 161/528 (30%), Positives = 282/528 (53%), Gaps = 29/528 (5%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
L HW ++ A+++ +ER D++ + ASG + SG++H+GN ++ + ++L+ G R
Sbjct: 21 LKHWIERIADEL-KER-DVEEHVVASGTSISGSIHIGNSCDVFIASSIAKSLKKDGFKSR 78
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
++ DD+D RKVP P PE EKYL P +M+P E++ H + L R
Sbjct: 79 TVWIADDHDPLRKVP--YPLPESYEKYLGVPYSMIPCPEGCCESFVEHFQRPFLEALERF 136
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTAC 186
I E+ A Y +G+Y + ++ +L+ E+++I N +RD + +++ P + C C
Sbjct: 137 RIGVEHYSGARMYTEGLYNDYIRTSLERAPEIREIFNRFRDRP--LRDDWLPYNPICEKC 194
Query: 187 NK-DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
+ +TT+ + GD T++Y CECG +D++ KL WRV+W RW EP G
Sbjct: 195 GRVNTTEAYDFSGD-TVRYRCECGFDGEMDIKSGLG-KLTWRVEWAARWKILGVTCEPFG 252
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDH + GGS+D +S++S+ I+++PAP Y++I L+G M+ S+G + + LE+
Sbjct: 253 KDHAASGGSYDVSSIISEEIFDYPAPYPVPYEWITLRG--EAMSKSRGVFFTPGQWLEIG 310
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PE Y ++P + D+ + + + +D+TERI + E A +++ +K IY
Sbjct: 311 PPESLNYFIFRSKPMKHKDFNPDMPFLDLMDQFDRTERIYYGMEDAASEKEEQKLRNIYR 370
Query: 366 LSQID--GMPECISYQI-----------PFRHLCNLLQINSGDIEAVIK-GLPDVKPAQV 411
+S I+ +P SY+ P R L ++L+ NS E ++ L + Q+
Sbjct: 371 VSMIEEFDLPLRPSYRFMTVACQIAGDDPER-LYDILRRNSQLPEELMDLELDQLTDKQL 429
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDE 471
++L R E NW+ APE KF ++ + ELSEP+ K ++ + D L + EM
Sbjct: 430 EQLNERIENVKNWLRL-YAPEFVKFQVQEELPDVELSEPQLKFLQDVAD--LMESREMSA 486
Query: 472 KTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ +Y + GL+P++ F A+Y+ L+ K GPR A F+ ++ ++
Sbjct: 487 EELHDEMYSILRRHGLKPQKAFQAIYRVLIGKKMGPRAASFLLSLERD 534
>gi|116754085|ref|YP_843203.1| lysyl-tRNA synthetase [Methanosaeta thermophila PT]
gi|116665536|gb|ABK14563.1| lysyl-tRNA synthetase [Methanosaeta thermophila PT]
Length = 497
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 162/523 (30%), Positives = 265/523 (50%), Gaps = 41/523 (7%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR 66
++HWAD AE++ D +T A+GITPSG VH+GN RE+++ D V RAL RG R
Sbjct: 2 IIHWADVIAERL----KDHGPHTLATGITPSGPVHIGNLREVMTADAVYRALVDRGVEAR 57
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
IY D YD R++ + E +++ P++ +P +Y+ H + +
Sbjct: 58 LIYIADTYDRLRRLYPFLD--ESFREHVGKPLSEIPCPEGCCSSYSEHFLQPFLRAMDLL 115
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTAC 186
I PE + Y++G+Y + +K AL R+E+ IL ++ + P C C
Sbjct: 116 DIKPEVYRADQLYKEGVYLDAIKTALKKRDEIARILKEV--SGRDVSPGWSPFDPICRDC 173
Query: 187 NK-DTTKIESWDGDWT-LKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
+ +TT++ +D D + Y CECG ++ +R KL WRVDWP RW + EP
Sbjct: 174 GRMNTTRVTGFDLDSERVDYVCECGSTGSVSMRGGG--KLVWRVDWPARWHILRVTVEPF 231
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
GKDH + GGS+DT +S+ +YN+PAP Y++I LKG G M SS G VV++ E+L+V
Sbjct: 232 GKDHATAGGSYDTGKRISEDVYNYPAPYPIVYEWIHLKG-KGAMHSSTGLVVTVQEMLDV 290
Query: 305 YQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY 364
PEV RYL T+P L ++ + +++D+ A R
Sbjct: 291 VPPEVLRYLIIRTKPEKHIEFDPGLPLLTLVDEFDQRRGDA----------------RAL 334
Query: 365 ELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL--PDVKPAQVDRLRTRAECAW 422
ELS I + + IPFRH+ +QI D + ++K L + ++ D + RA
Sbjct: 335 ELSSIR---QSEPFTIPFRHMVTAVQIARDDEDLLLKVLERSGYETSRRDEILARARNVR 391
Query: 423 NWITDGGAPEEFKFALRADGSKA--ELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYD 480
W+ + AP KF ++ D +A +S E + + + + +++ + +Y
Sbjct: 392 IWL-ERYAPPFVKFDVKEDLPQAVRNISPEERRGLGMLAE----RIEGKSAQEIHDEIYA 446
Query: 481 AAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEK 523
A E GL+PK+ F AVY A + + QGP+ F+ ++ ++ +++
Sbjct: 447 VANELGLDPKKFFQAVYLAFLGERQGPKAGWFIASLDRDFVKR 489
>gi|150400653|ref|YP_001324419.1| lysyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
gi|150013356|gb|ABR55807.1| lysyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
Length = 545
Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 178/549 (32%), Positives = 292/549 (53%), Gaps = 49/549 (8%)
Query: 8 LHWADQTAEKIIRERGDLD--VYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
+HWAD TA+KII++R + Y +SGITPSG +HVGN RE ++ D + + L G
Sbjct: 1 MHWADATAKKIIKKRQKQNPKKYLISSGITPSGHIHVGNARETLTADGIYKGLLKEGVEA 60
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
I+ D+YD RKV +P PE EK++ P++ +P ++YA H + L
Sbjct: 61 ELIFIADNYDPLRKVYPFLP-PE-YEKFVGMPLSEIPCPEGCCDSYADHFLNPFINSLDD 118
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTA 185
+GI+ E Y+ G+Y + + AL++R+++K +L+ YR E + E+++P+++ C
Sbjct: 119 LGINLTVYKADENYKNGLYNDAIITALNDRDKIKGVLDKYRREP--LPEDWYPLNIICEK 176
Query: 186 CNK-DTTKIESWDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEP 243
C K TTK+ +++ + T+ Y C+CGH + + KL WRVDWP RW V EP
Sbjct: 177 CGKLSTTKVINYNSEESTVDYECQCGHKNTVKPFDGRG-KLPWRVDWPARWKIFDVVAEP 235
Query: 244 AGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGL----KGVPGKMASSKGKVVSLA 299
GKDH + GGS+DT +S +Y + AP Y++I L K +P M+SS G V ++
Sbjct: 236 MGKDHGASGGSYDTGIKISQMVYRYGAPEKIIYEWIQLKVGDKALP--MSSSSGVVFAVK 293
Query: 300 EVLEVYQPEVARYLFAGTRPNTEFVISFDLDVI-KIYEDYD--KTERIAWKAEKAKNDET 356
+ +++ PEV R+L ++P+ I F+L + I +DYD +T+ K ++ +E
Sbjct: 294 DWVKICHPEVLRFLLLRSKPSKH--IDFNLKTLPNIVDDYDELETKYFGLKEKEGNGEEL 351
Query: 357 FEKE---YRIYELSQIDGMPECISYQIPFRHLCNLLQI------NSGDIEAVIKGLPDVK 407
E E R+YEL +P + IP++ + QI + D+ VI L
Sbjct: 352 NENEKDKIRLYELCT-PKIPNKLPLNIPYKFCVIVSQIAYNPETETIDMNKVIDILKRNN 410
Query: 408 PAQVD------------RLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAI 455
Q + +L+TR CA NW + G + A + ELS+ + + I
Sbjct: 411 YEQAELLKYEENKEDYNKLKTRLYCAMNWAIEYGEKLILIDSNTAKENYNELSQKQKEWI 470
Query: 456 KTIRDSLLPKMDEMDEKTFSTA-----LYDAAKECGLEPKQMFVAVYQALVSKDQGPRLA 510
K R++L K +E++++ + +YD+AKE LEPK+ F A Y+ L+ K+ GP+L
Sbjct: 471 KLFRENL--KNMGNNEESYNASSIHELIYDSAKEIDLEPKEAFSASYKILLGKNYGPKLG 528
Query: 511 GFMKTIGKE 519
F+ ++ K+
Sbjct: 529 SFLSSLDKD 537
>gi|29831292|ref|NP_825926.1| lysyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
gi|29608407|dbj|BAC72461.1| putative lysyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
Length = 548
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 164/560 (29%), Positives = 269/560 (48%), Gaps = 82/560 (14%)
Query: 31 ASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPK-PEV 89
ASG++PSG +H+GN RE+++ LV +R RG VR + SWDDYD +RKVPA +P E
Sbjct: 4 ASGLSPSGPIHLGNLREVMTPHLVADEVRRRGHTVRHLISWDDYDRYRKVPAGVPGVDES 63
Query: 90 LEKYLRYPITMVP-DTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+++ P+T VP N+A H + + L +G+ + + Q E+Y G+Y E +
Sbjct: 64 WAEHIGKPLTSVPAPKGSAYPNWAEHFKAAMIEALAELGVEYDGISQTEQYTSGVYREQV 123
Query: 149 KKALDNREELKDILNTYR-------------------------------DESHKITEEYW 177
A+ +R ++ IL+ YR D+ + Y+
Sbjct: 124 LFAMKHRGDIDAILDQYRTKKAPAKKQQGQKPVDEAELEAAEGSGAAAEDDGSSGSAGYF 183
Query: 178 PVSVFCTACNKDTTKIESWDGDWT-LKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWA 235
P +C C KD T + ++D D T L Y+C CGH E + L + KL W+VDWPMRWA
Sbjct: 184 PYKPYCGRCEKDLTTVTAYDDDTTELSYTCTACGHSETVRLSEFNRGKLVWKVDWPMRWA 243
Query: 236 FEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKV 295
+E VFEP+G DH S G SF + I+ P+ Y F+G+ G+ KM+SSKG V
Sbjct: 244 YEGVVFEPSGVDHSSPGSSFQVGGQIVG-IFGGKQPIGPMYAFVGISGM-AKMSSSKGGV 301
Query: 296 VSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDE 355
+ A+ L++ +P++ R+L+A RPN F I+FD ++ ++Y+++DK A K +
Sbjct: 302 PTPADALQIMEPQLLRWLYARRRPNQSFKIAFDQEIQRLYDEWDKL------AAKVADGA 355
Query: 356 TF--EKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKP----A 409
+ + G +P+R L ++ I +G + ++ L ++ P
Sbjct: 356 VLPADAAAYARAIGTAAGELPRTPRPMPYRTLASVADITAGAEDQTLRILSELDPENPLT 415
Query: 410 QVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTI----RDSLLPK 465
+D +R R + A WI + P E + +R EP+ +K++ R+SL
Sbjct: 416 SLDEVRPRLDKAETWI-NTQVPAEERTVVR--------DEPDADLLKSLDDQGRESLRLL 466
Query: 466 MDEMDEK---------TFSTALYDAAKECGLEPKQM-----------FVAVYQALVSKDQ 505
++ +D + A PK++ F +Y LV +D
Sbjct: 467 LEGLDSNWSLDGLTHLVYGVPKVRAGFSADATPKELPQEIKVAQRTFFALLYHLLVGRDT 526
Query: 506 GPRLAGFMKTIGKERLEKIF 525
GPRL + +G++R+ K+
Sbjct: 527 GPRLPTLLLAVGQDRVRKLL 546
>gi|7480963|pir||T36123 probable lysyl-tRNA synthetase - Streptomyces coelicolor
(fragment)
Length = 545
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 160/548 (29%), Positives = 266/548 (48%), Gaps = 60/548 (10%)
Query: 31 ASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPK-PEV 89
ASG++PSG +H+GN RE+++ LV +R RG VR + SWDDYD +RKVPA +P E
Sbjct: 3 ASGLSPSGPIHLGNLREVMTPHLVADEVRRRGHEVRHLISWDDYDRYRKVPAGVPGVDES 62
Query: 90 LEKYLRYPITMVP-DTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+++ P+T VP N+A H + + L +G+ + + Q +Y G+Y E +
Sbjct: 63 WAEHIGKPLTSVPAPKGSPHPNWAEHFKAAMVDSLAEMGVEFDGISQTAQYTSGVYREQI 122
Query: 149 KKALDNREELKDILNTYR------DESHKITEE-----------------------YWPV 179
A+ +R ++ IL+ YR +S K +E Y+P
Sbjct: 123 LHAMKHRRDIDAILDQYRTKKAPAKKSQKPLDEAELEAAEGSGAAAEDDGSSGSAGYFPY 182
Query: 180 SVFCTACNKDTTKIESWDGDWT-LKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWAFE 237
+C C KD T + ++D D T L Y+C CG E + L + KL W+VDWPMRWA+E
Sbjct: 183 KPYCGNCEKDLTTVTAYDDDSTELTYACTACGFSETVRLSEFNRGKLVWKVDWPMRWAYE 242
Query: 238 KTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVS 297
VFEP+G DH S G SF + I+ P+ Y F+G+ G+ KM+SSKG V +
Sbjct: 243 GVVFEPSGVDHSSPGSSFQVGGQIVG-IFGGEQPIGPMYAFVGISGM-AKMSSSKGGVPT 300
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETF 357
A+ L++ +P++ R+L+A RPN F I+FD ++ ++Y+++D+ + D
Sbjct: 301 PADALKIMEPQLLRWLYARRRPNQSFKIAFDQEIQRLYDEWDRLDAKVADGSALPADAAA 360
Query: 358 EKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQ----VDR 413
++ P +P+R L ++ I +G + ++ L ++ PA +D
Sbjct: 361 HARAVGTAAGELPRTPR----PLPYRTLASVADITAGHEDQALRILGELDPANPIASLDE 416
Query: 414 LRTRAECAWNWITDGGAPEEFKFALRADGSK---AELSEPETKAIKTIRDSLLP--KMDE 468
R R + A WI + P + + +R + L EP ++++ + D L +D
Sbjct: 417 ARPRYDKAEAWI-NTHVPADQRTIVRQEPDAELLKSLDEPSRQSLRLLLDGLADHWSLDG 475
Query: 469 MDEKTFSTALYDAAKECGLEPKQM-----------FVAVYQALVSKDQGPRLAGFMKTIG 517
+ + A PK++ F +Y LV +D GPRL + +G
Sbjct: 476 LTHHVYGVPKVQAGFPADATPKELPPEIKTAQRTFFALLYHLLVGRDTGPRLPTLLLAVG 535
Query: 518 KERLEKIF 525
++R+ +
Sbjct: 536 QDRVRTLL 543
>gi|32141198|ref|NP_733599.1| lysyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
gi|27808679|sp|Q9X895|SYK_STRCO Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|24413783|emb|CAD55312.1| putative lysyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
Length = 580
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 166/574 (28%), Positives = 276/574 (48%), Gaps = 66/574 (11%)
Query: 10 WADQTAEKIIRER-----GDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN 64
W + A+++I E G V ASG++PSG +H+GN RE+++ LV +R RG
Sbjct: 13 WVSRFADEVIAESERRAPGKPGV-VVASGLSPSGPIHLGNLREVMTPHLVADEVRRRGHE 71
Query: 65 VRFIYSWDDYDVFRKVPANMPK-PEVLEKYLRYPITMVP-DTFERDENYARHHEHDVEAV 122
VR + SWDDYD +RKVPA +P E +++ P+T VP N+A H + +
Sbjct: 72 VRHLISWDDYDRYRKVPAGVPGVDESWAEHIGKPLTSVPAPKGSPHPNWAEHFKAAMVDS 131
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR------DESHKITEE- 175
L +G+ + + Q +Y G+Y E + A+ +R ++ IL+ YR +S K +E
Sbjct: 132 LAEMGVEFDGISQTAQYTSGVYREQILHAMKHRRDIDAILDQYRTKKAPAKKSQKPLDEA 191
Query: 176 ----------------------YWPVSVFCTACNKDTTKIESWDGDWT-LKYSCE-CGHC 211
Y+P +C C KD T + ++D D T L Y+C CG
Sbjct: 192 ELEAAEGSGAAAEDDGSSGSAGYFPYKPYCGNCEKDLTTVTAYDDDSTELTYACTACGFS 251
Query: 212 EALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAP 271
E + L + KL W+VDWPMRWA+E VFEP+G DH S G SF + I+ P
Sbjct: 252 ETVRLSEFNRGKLVWKVDWPMRWAYEGVVFEPSGVDHSSPGSSFQVGGQIVG-IFGGEQP 310
Query: 272 VSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDV 331
+ Y F+G+ G+ KM+SSKG V + A+ L++ +P++ R+L+A RPN F I+FD ++
Sbjct: 311 IGPMYAFVGISGM-AKMSSSKGGVPTPADALKIMEPQLLRWLYARRRPNQSFKIAFDQEI 369
Query: 332 IKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQI 391
++Y+++D+ + D ++ P +P+R L ++ I
Sbjct: 370 QRLYDEWDRLDAKVADGSALPADAAAHARAVGTAAGELPRTPR----PLPYRTLASVADI 425
Query: 392 NSGDIEAVIKGLPDVKPAQ----VDRLRTRAECAWNWITDGGAPEEFKFALRADGSK--- 444
+G + ++ L ++ PA +D R R + A WI + P + + +R +
Sbjct: 426 TAGHEDQALRILGELDPANPIASLDEARPRYDKAEAWI-NTHVPADQRTIVRQEPDAELL 484
Query: 445 AELSEPETKAIKTIRDSLLP--KMDEMDEKTFSTALYDAAKECGLEPKQM---------- 492
L EP ++++ + D L +D + + A PK++
Sbjct: 485 KSLDEPSRQSLRLLLDGLADHWSLDGLTHHVYGVPKVQAGFPADATPKELPPEIKTAQRT 544
Query: 493 -FVAVYQALVSKDQGPRLAGFMKTIGKERLEKIF 525
F +Y LV +D GPRL + +G++R+ +
Sbjct: 545 FFALLYHLLVGRDTGPRLPTLLLAVGQDRVRTLL 578
>gi|148643447|ref|YP_001273960.1| lysyl-tRNA synthetase (class I), LysS [Methanobrevibacter smithii
ATCC 35061]
gi|148552464|gb|ABQ87592.1| lysyl-tRNA synthetase (class I), LysS [Methanobrevibacter smithii
ATCC 35061]
Length = 527
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 155/533 (29%), Positives = 276/533 (51%), Gaps = 32/533 (6%)
Query: 9 HWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFI 68
HW + AE++ + D D + ASG + SG++H+GN ++ + + + LR GK + I
Sbjct: 3 HWIENIAEEL--SKRDTDKHVIASGTSISGSIHIGNSCDVFIANAIGKKLRELGKEAQTI 60
Query: 69 YSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGI 128
+ DD+D RKVP P PE +KYL P + +P +N+ H E V+ GI
Sbjct: 61 WIADDHDPLRKVP--YPLPENYDKYLGMPYSTIPCPDGCCDNFVEHFEKPFLGVMDAYGI 118
Query: 129 HPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNK 188
E+ E Y+ G+Y + ++ AL+N + +K+I N YR E + +++ P + C C +
Sbjct: 119 EIEHKSGFEMYKSGVYNDYIRTALENVDRIKEIFNQYRREP--LADDWLPYNPICEECGR 176
Query: 189 -DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKD 247
+TT +DGD +KY C+CGH ++++ KL WRV+W RW EP GKD
Sbjct: 177 VNTTYAYDFDGD-IIKYRCDCGHEGEMNIKSGNG-KLTWRVEWAARWKIFNVTCEPFGKD 234
Query: 248 HHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQP 307
H + GGS+D +S++S I+++ AP Y++I L G M+ S G S + L +
Sbjct: 235 HAASGGSYDVSSIISKEIFDYEAPYPVPYEWITLDG--EAMSKSHGVFFSPEQWLAIGPA 292
Query: 308 EVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELS 367
E Y ++P S + + + +DK E++ + E+A +++ +K +IYE++
Sbjct: 293 ESLNYYLFRSKPMKAKDFSPKMSFLDFMDQFDKVEKVFYNEEEAPSEKEGKKFKKIYEIA 352
Query: 368 QI-DGMPECISYQIPFRHLCNLLQINSGDIEAVI---------------KGLPDVKPAQV 411
QI +G P + ++ P+R L N QI ++E + K D+ ++
Sbjct: 353 QINEGSP--LPFRPPYRFLVNAYQIAGNNLEKIFTILKNNSQLTKSFKNKEFCDLNETEL 410
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADG-SKAELSEPETKAIKTIRDSLLPKMDEMD 470
+ + R + NW+ D AP+ KF ++ K L++ +T+ + + D L+ +
Sbjct: 411 KQFQERVDNVVNWL-DTYAPKFVKFQVQEKSVPKLPLTDEQTEFLGKLAD-LMESKEFNK 468
Query: 471 EKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEK 523
+ A+Y+ + GL+P++ F A+Y+ ++ + QGPR A F+ ++ K+ + K
Sbjct: 469 AEDLHDAMYEILEGQGLKPQKGFQAIYKMILGQKQGPRAASFLLSLDKDFVVK 521
>gi|48477538|ref|YP_023244.1| lysyl-tRNA synthetase [Picrophilus torridus DSM 9790]
gi|74579532|sp|Q6L1V1|SYK_PICTO Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|48430186|gb|AAT43051.1| lysyl-tRNA synthetase [Picrophilus torridus DSM 9790]
Length = 504
Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 154/523 (29%), Positives = 271/523 (51%), Gaps = 32/523 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HW++ + + GD + T GI+PSG +H+GN REI++ D++ + G F
Sbjct: 1 MHWSESLLKDV---SGDQRIST---GISPSGPIHIGNMREILTGDIIYKEALKLGIKASF 54
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY DD D RKV +P E+Y+ +P++M+P + D+ Y+ + + + ++
Sbjct: 55 IYLCDDMDPLRKVYPFLPGS--YERYVGHPLSMIPAP-DGDKTYSEYFLEPFKETIDKID 111
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
+ PE + Y+ G+ + + A++NRE++K+ILN+ + +KIT +++P C +C
Sbjct: 112 VRPEIISTTSLYKNGVLSRAIDIAMNNREKIKNILNSIGN--YKITGDWYPYEPVCKSCG 169
Query: 188 K-DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGK 246
+ +TT + S++ + +Y C+CG+ D+R K+ WRV+WP +W EP GK
Sbjct: 170 RINTTTVISYNYPYA-EYKCKCGYTGKADIRTDDG-KMPWRVEWPAKWFSLHVTIEPFGK 227
Query: 247 DHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQ 306
DH + GGS+DT ++ I+N P+ Y+ I LKG G M SS G V+ +E+++
Sbjct: 228 DHGAAGGSYDTGKAIASDIFNINPPLPLLYERIFLKG-KGVMHSSTGVVIPASEMIKFSP 286
Query: 307 PEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYEL 366
PE+ R+L A P ++ + ++Y+K ER + + K+D+ E +YEL
Sbjct: 287 PEIIRFLIAKNNPGRHIDFDPGPGLLNLIDEYEKYERAYFGLDSVKDDDYKE----VYEL 342
Query: 367 SQIDGMPECISYQIPFRHLCNLLQI--NSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNW 424
S++ + E +I FRH+ L+QI N+ + + +K K D + + A W
Sbjct: 343 SRLKILKE--PEKITFRHIVTLVQIYNNNDALLSALKRSGYEKDYIDDYIMNEIDTARYW 400
Query: 425 ITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMD--EMDEKTFSTALYDAA 482
+ + AP E KF+L + L++ E K I + L +D E + +YD
Sbjct: 401 L-EKYAPPEMKFSLTDE--NINLNDDERK----IVNEFLENIDNIEWSPDSIHNYVYDII 453
Query: 483 KECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIF 525
+ P+ F Y+ L+ + +GPRL F+ +G+E + K F
Sbjct: 454 GRSKMRPQDAFAVFYKILIGRSRGPRLGYFIYNLGREYIIKRF 496
>gi|20094422|ref|NP_614269.1| Lysyl-tRNA synthetase (class I) [Methanopyrus kandleri AV19]
gi|27805740|sp|Q8TWP6|SYK_METKA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|19887506|gb|AAM02199.1| Lysyl-tRNA synthetase (class I) [Methanopyrus kandleri AV19]
Length = 555
Score = 228 bits (580), Expect = 9e-58, Method: Composition-based stats.
Identities = 168/563 (29%), Positives = 275/563 (48%), Gaps = 65/563 (11%)
Query: 9 HWADQTAEKII---RERGDL--DVYTCASGITPSGTVHVGNFREIISVDLVVRALRSR-G 62
HW++ A ++ R+ D D ASG + SG +HVGN R++++ D V R LR R
Sbjct: 5 HWSEVKAREVTEHCRKHADELPDEIVVASGASTSGRLHVGNARDVLTADAVARVLRERYH 64
Query: 63 KNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAV 122
++VR ++ DD D R++P ++ + E YL P +P DE Y+ +
Sbjct: 65 EDVRVVWISDDVDPLRRIPRDL-DGRLSEDYLGVPYKAIPVG---DEPYSDRWARNFVEE 120
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNRE----ELKDILNTYRDESHKITEEYWP 178
L G E++ AE Y + + +++ +++ L +L + E ++ Y P
Sbjct: 121 LREFGAEVEWISSAELYTDNGFVKLVREVVNDYYGGGGRLASVLERFGLEDARV---YMP 177
Query: 179 VSVFCTACNK-DTTKIESWDGDWTLKYSCE------------CGHCEALDLRKAKSV--- 222
V C C + TT++ DG W ++Y CE CGH LDLRK V
Sbjct: 178 V---CEECGRIATTRVVDVDG-WRIEYVCEGRHEIGDAVLEGCGHRGELDLRKPIEVNGF 233
Query: 223 -----KLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD 277
KLGW+++WP RW + EP GKDH+ GGS++ S +++ + +PAPV Y+
Sbjct: 234 EIPPGKLGWKIEWPTRWVYLGVACEPFGKDHYVAGGSYEVGSAIAEEFFGFPAPVPVPYE 293
Query: 278 FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYED 337
+I L G M+SSKG V+L++ EV EV RYL +P + +++ +D
Sbjct: 294 WITLDG--KAMSSSKGHYVTLSDWGEVCHREVLRYLVLRGKPLKHLDLDLRFGLLQAVDD 351
Query: 338 YDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQ------- 390
YD+ E+ + E E+E RIYELS++D +PE +PFR + Q
Sbjct: 352 YDELEKRYFAGEAD------ERERRIYELSRVDEIPEECPPHVPFRFCAVVAQVVGIEDD 405
Query: 391 INSGDIEAVIK-----GLPDVKPAQVDR--LRTRAECAWNWITDGGAPEEFKFALRADGS 443
++ + E ++ G + +P R LR R E A W+ D APEE +F +R +
Sbjct: 406 VSEEEFERALEIFRRTGHLEAEPEGFGREWLRERLEKASRWV-DRYAPEEARFRVREEPE 464
Query: 444 KAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSK 503
ELS+ E + ++ + L + + D +T +++AA+ GL P F Y +V K
Sbjct: 465 PVELSDKEREFLEDLVRRLESETTKEDPETLQRTVFEAARTAGLRPADAFRVFYNVVVGK 524
Query: 504 DQGPRLAGFMKTIGKERLEKIFK 526
D+GPR + +G +R+ ++ +
Sbjct: 525 DRGPRAGTLIAAVGVDRISRLIR 547
>gi|16082175|ref|NP_394619.1| lysyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
gi|11387135|sp|P57677|SYK_THEAC Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|10640474|emb|CAC12288.1| lysyl-tRNA synthetase (lysS) related protein [Thermoplasma
acidophilum]
Length = 507
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 159/509 (31%), Positives = 259/509 (50%), Gaps = 33/509 (6%)
Query: 31 ASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
++GI+PSG +HVGN REI++ D++ +A+ RG FIY DD D RKV + K
Sbjct: 21 STGISPSGPIHVGNMREILTGDILFKAITKRGLESDFIYLCDDMDPLRKVYPFLSKD--Y 78
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
E+Y+ P+ +P + Y+ ++ V+ I + ++ Y+ GM A+
Sbjct: 79 ERYVGQPLKNIPAP-QGAGKYSDYYLEPFVRVMKEANIPARVIKTSDLYESGMLAQACDI 137
Query: 151 ALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNK-DTTKIESWDGDWTLKYSCECG 209
A++NRE++KDIL T KI +++P C C + TT + S+ + +Y+C+CG
Sbjct: 138 AINNREKIKDILETV--SGRKIEGDFYPYEPLCEKCGRISTTHVISYSYPYA-EYACKCG 194
Query: 210 HCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWP 269
H D+RKA+ K+ WRV+WP +W K EP GKDH + GGS+DT ++ ++
Sbjct: 195 HHGFADIRKAEG-KMPWRVEWPAKWFALKVTVEPFGKDHGAPGGSYDTGRRIAREVFGIE 253
Query: 270 APVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDL 329
PV Y+ I LKG G M SS G ++ +E++EV P++ RY+ A P +
Sbjct: 254 PPVPLMYERIILKG-KGAMHSSTGLAIAASEIMEVIPPDLLRYMIARVNPGRHIDFDPGM 312
Query: 330 DVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLL 389
++ + ++ +K + A+ +A DE + Y L D P Y + FRHL L+
Sbjct: 313 GILALSDELEKLQD-AYFENRASLDED-QAAMVEYSLVNKDRKP----YPVDFRHLVTLV 366
Query: 390 QINSGDIE---AVIKGLP-DVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKA 445
QI + E AV KG P D A R E A W+ + APE KF + K
Sbjct: 367 QIYRTEDEILRAVKKGQPSDFIEAD---FRKEIEYARRWL-ERYAPESVKFRILPVDQKI 422
Query: 446 ELSEPETKAIKTIRDSLLPKMDEM--DEKTFSTALYDAAKECGLEPKQMFVAVYQALVSK 503
ELS+ + I L +++M + ++ +Y+ +++ P+ +F Y+ + K
Sbjct: 423 ELSDSDL----AILSDFLNGIEDMPWNSESIHDRIYEISQKFKTNPESVFTLFYRVFIGK 478
Query: 504 DQGPRLAGFMKTIGK----ERLEKIFKDY 528
D+GPRL F+ +GK ER+ + +D+
Sbjct: 479 DRGPRLGYFLFNLGKDFVRERIRNVIRDH 507
>gi|13542050|ref|NP_111738.1| lysyl-tRNA synthetase [Thermoplasma volcanium GSS1]
gi|24418707|sp|Q979B8|SYK_THEVO Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|14325481|dbj|BAB60385.1| tRNA synthetase Lys [Thermoplasma volcanium GSS1]
Length = 503
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 152/517 (29%), Positives = 260/517 (50%), Gaps = 33/517 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+ WAD + +I E+ ++GI+PSG +HVGN REI++ D++ +A+ RG F
Sbjct: 1 MFWADAAVKDLIGEQ------RISTGISPSGPIHVGNMREILTGDILYKAVIKRGLKSDF 54
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY DD D RKV + + KY+ +P+ +P + Y+ H + V+ + G
Sbjct: 55 IYLCDDMDPLRKVYPFLDQS--YSKYVGFPLKNIPSP-DGVGVYSDHFLNPFIEVMRKTG 111
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I + ++ Y G+ A+ + ++ R E+KDIL + I +++P C C
Sbjct: 112 IPARVIKTSDLYGNGILADAIDTVMERRSEIKDILE--KITGRMIEGDFYPYEPLCEKCG 169
Query: 188 K-DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGK 246
+ ++T + S+ + +Y+C+CGH D+R+A+ K+ WR++WP +W K EP GK
Sbjct: 170 RINSTSVISYKYPYA-EYTCKCGHHGFADIRRAEG-KMPWRIEWPAKWYALKVSIEPFGK 227
Query: 247 DHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQ 306
DH + GGS+DT ++ I+ P+ Y+ I LKG G M SS G + +E+++V
Sbjct: 228 DHGAPGGSYDTGKRIAREIFGIEPPLPLVYERIMLKG-KGAMHSSTGLAIPASEIIDVMP 286
Query: 307 PEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYEL 366
PE+ R+L A P+ L ++ +++++++ ++ D EY + E
Sbjct: 287 PELLRFLIARVNPSRHIDFDPGLGLLNLFDEFERYLN-KYREGDIDGDSKAIIEYSLIE- 344
Query: 367 SQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR--LRTRAECAWNW 424
E +SY I FRHL L+QI E +++ Q+D L + A NW
Sbjct: 345 ------KEKLSYPIDFRHLITLIQIYQKK-EDILRAAMASTKDQLDESALYDEIKYAKNW 397
Query: 425 ITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEM--DEKTFSTALYDAA 482
+ + AP+ KF L A KAELS+ + + I L + M D + +++ A
Sbjct: 398 L-ERYAPDNVKFKLLAIDEKAELSDQD----RAILSKFLEVSNSMAWDSNEIHSTVHNVA 452
Query: 483 KECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
K+ G+ P F Y+ + K++GPRL F+ +GK+
Sbjct: 453 KDLGIGPDAAFSTFYKVFIGKERGPRLGYFLFNLGKD 489
>gi|11498815|ref|NP_070044.1| lysyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
gi|3183169|sp|O29052|SYK_ARCFU Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|2649372|gb|AAB90029.1| lysyl-tRNA synthetase (lysS) [Archaeoglobus fulgidus DSM 4304]
Length = 493
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 162/532 (30%), Positives = 267/532 (50%), Gaps = 55/532 (10%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HWAD A +++ + + A+GI+PSG +H+GN RE+++ D + RAL G +
Sbjct: 1 MHWADVIAADLLKRS---NSHRIATGISPSGHIHLGNLREMVTADAIRRALLDAGGEAKI 57
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
+Y DD+D R+ +P E E Y+ P+ +PD ++Y+ H L +G
Sbjct: 58 VYIADDFDPLRRRYPFLP--EEYENYVGMPLCKIPDPEGCHDSYSEHFLQPFLESLEILG 115
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I E + Y +G+Y + AL R+E+ I+ ++ E ++P C C
Sbjct: 116 IPVEVRRAYQMYSEGLYENNTRIALKRRDEIARIIAEV--TGRELEERWYPFMPLCENCG 173
Query: 188 K-DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGK 246
+ ++T++ S+D +W + Y C+CGH + KL WRVDW RW EP GK
Sbjct: 174 RINSTRVTSFDENW-IYYECDCGHSGRVGY--VGGGKLTWRVDWAARWQILSITCEPFGK 230
Query: 247 DHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQ 306
DH + GGS+DT ++ I+++ P Y++I LKG G M SSKG V+ + E++EV
Sbjct: 231 DHAAAGGSYDTGVRIAREIFDYEPPYPVPYEWIHLKG-KGAMKSSKGIVLPVREMVEVIP 289
Query: 307 PEVARYLFAGTRPNTEFVISFD-----LDVIKIYEDYDKTERIAWKAEKAKNDETFEKEY 361
PE+ RY+ +P E I FD LD+++ +E+ K +
Sbjct: 290 PEIVRYITIRVKP--ERHIEFDPGLGLLDLVEEFEEKFKEKD------------------ 329
Query: 362 RIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIK-------GLPDVKPAQVDRL 414
R ELS + E + +PFRHL + QI + D+E ++ + DV V+R
Sbjct: 330 RSVELSLVG---EVVYSDVPFRHLIVVGQIANWDLEKALEIIERTGYTVDDVTRRDVER- 385
Query: 415 RTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTF 474
R + A W+ + AP+ KF + + AE SE E K ++ + L +M +
Sbjct: 386 --RLKYARKWL-EKYAPDNIKFEI-PEKVTAEFSEEEKKFLRAYAERL---RSDMKPEEI 438
Query: 475 STALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFK 526
T +YD +KE G++ + F A+Y+A++ K GPR+ F+K++G E + + K
Sbjct: 439 HTLVYDVSKEVGIKSSKAFQAIYKAILGKTYGPRVGYFIKSLGVEWVRERIK 490
>gi|52549821|gb|AAU83670.1| Lysyl-tRNA synthetase [uncultured archaeon GZfos32E7]
Length = 507
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 157/538 (29%), Positives = 255/538 (47%), Gaps = 57/538 (10%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+HW+ A++II R + + A+GITPSG +HVGN REII D V ALR + +
Sbjct: 1 MHWSKVIAKEIIDSRRETK-HVVATGITPSGAIHVGNLREIIIGDAVYTALRDMDVDAKL 59
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY D +D R+ +P E E + ++ +PD +YA H L +
Sbjct: 60 IYVADTFDPLRRRYPFLP--EEYETQVGKTLSEIPDPEGCHLSYADHFLLPFLDALDLLD 117
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
I E E Y+ G+Y + +K+A R+E+ IL +++E++ P + C AC
Sbjct: 118 IEVEIYRADEMYKSGLYVDVIKEAFLRRDEISRILEVV--SGRQMSEDWTPFNPLCDACG 175
Query: 188 KDTTKIES-WDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
+ T+ I + +D + Y CECG+ KL WRVDW RW EP G
Sbjct: 176 RITSAIVTGYDIEKEEAYYECECGNKGVASFTGGG--KLAWRVDWAARWKILGVTIEPFG 233
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGK--------MASSKGKVVS 297
KDH + GGSFD+ +S IYN+ AP ++ I LK G+ M+SSKG +
Sbjct: 234 KDHAAPGGSFDSGKRISTEIYNYDAPYPIPFEHIHLKTQSGEGKKAKVTSMSSSKGTNIP 293
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETF 357
+ E++E P + +++ RP+ + L ++ + ++Y++
Sbjct: 294 VHEIVEAVPPAILKHVIVRVRPDKHIEFNPALPLLYLIDEYER----------------- 336
Query: 358 EKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPA------QV 411
+I G+ ++ +IPFRHL L+QI G+ +++ + A ++
Sbjct: 337 ----------EIGGIGRGVAGEIPFRHLLTLVQIARGEFSILLEVIKRSGYAVHGDDEEL 386
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAE---LSEPETKAIKTIRDSLLPKMDE 468
+ +R +A A NW+ AP KF L+ D K E LSE + KA+ + + D
Sbjct: 387 EEIRKKAGYAENWLRT-YAPPSLKFELQLDVPKEELKQLSELQKKALGRLAQDI---QDG 442
Query: 469 MDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFK 526
M+ + + +YD A +E K++F A+Y AL+ K GPR + ++ E L F+
Sbjct: 443 MNAEDWHNLIYDVASATNIETKELFQAIYMALLKKPSGPRAGWLLASLDSEFLRSRFE 500
>gi|126008332|ref|ZP_01708905.1| hypothetical protein Faci_03000971 [Ferroplasma acidarmanus fer1]
Length = 507
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 155/517 (29%), Positives = 258/517 (49%), Gaps = 33/517 (6%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
++WAD E + + ++GI+PSG +HVGN REI++ D++ +A + RF
Sbjct: 1 MYWADALVENLNGTQ------LISTGISPSGPIHVGNMREILTGDILYKASLDKKLESRF 54
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
IY DD D RKV + +Y+ P++ +P E D Y+ + L ++
Sbjct: 55 IYLCDDLDPLRKVYPFLDGS--YSQYVGMPLSYIPAP-EGDGKYSDYFLKPFLETLKKIN 111
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACN 187
++ E + Y++G AE + A+++REE+ I++ + I E++P C+ C
Sbjct: 112 VNVEVISTTGLYREGKLAEAIDIAMNHREEIAKIMHDV--AGYDIGPEWYPYEPRCSKCG 169
Query: 188 K-DTTKIESWDGDWTLKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAG 245
K +++ + ++ + Y C+ CG+ + D+RK K+ WRV+WP +W EP G
Sbjct: 170 KINSSTVTKYENPYAY-YKCKACGNEDKADIRKDDG-KMPWRVEWPAKWYALGVTIEPFG 227
Query: 246 KDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVY 305
KDH + GGS+DT ++ +I+ PV Y+ I LKGV G M SS G ++ +EV
Sbjct: 228 KDHAASGGSYDTGKEIAAKIFKISPPVPLMYERILLKGV-GVMHSSTGVAITASEVTTFA 286
Query: 306 QPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYE 365
PE+ R+L A P + ++ + +DY+K ER A+ N+E F+ RIYE
Sbjct: 287 PPEILRFLIARNDPGRHIDFDPGMGLLNLIDDYEKMER-AYFGLDESNNENFK---RIYE 342
Query: 366 LSQIDGM--PECISYQIPFRHLCNLLQINSGD--IEAVIKGLPDVKPAQVDRLRTRAECA 421
+S+I + PE +I FRH+ L+QI D + +K K D L+ A
Sbjct: 343 MSRIKILDAPE----KINFRHIVTLIQIYRDDNSFFSALKRSGYDKDQIDDYLKNEIVIA 398
Query: 422 WNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDA 481
W++ APE KF+L + L++ + ++ D L E + T +YD
Sbjct: 399 KYWLSK-YAPENIKFSL--TDKQFLLTDDQRSILQEFLDKLASA--EWTSDSIHTVIYDI 453
Query: 482 AKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK 518
+ L PK +F Y+ + KD+GPRL F+ ++ K
Sbjct: 454 IGDRKLTPKDVFTLFYRVFIDKDKGPRLGYFLSSMDK 490
>gi|91773806|ref|YP_566498.1| lysyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
gi|91712821|gb|ABE52748.1| lysyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
Length = 528
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 158/545 (28%), Positives = 262/545 (48%), Gaps = 48/545 (8%)
Query: 6 KLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
++ HWAD AE+ + + + + ++GITPSG +H+GN RE+++ D RA+ G
Sbjct: 3 EITHWADVIAEEAAK---NGNKHLVSTGITPSGHIHIGNMREVVTADAAYRAMNDAGLES 59
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
FIY D++D RKV +P E +++ PI+ +P ++YA H L +
Sbjct: 60 EFIYIADNFDPLRKVYPFLP--ESYAEHVGKPISEIPCPCGECKSYAEHFLTPFLEGLEK 117
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTA 185
+GIHP+ E Y+ G + E +K AL R+++ IL + + E+ P + C
Sbjct: 118 LGIHPKVYRADELYKSGRFVEAIKAALIKRDDIAKILKEVSGKD--VLPEWSPFNPICQE 175
Query: 186 CNK-DTTKIESWDGDW-TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEP 243
C K +T + +D D T+ Y C CGH + + KL WRVDWP +W EP
Sbjct: 176 CKKINTATVTGFDADAETVDYECSCGHSGTVSMIGGG--KLTWRVDWPAKWKMLNVTVEP 233
Query: 244 AGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLE 303
GKDH S+GGS+DT + I++ P Y++I L G G M+SS G VVS++++L+
Sbjct: 234 FGKDHASRGGSYDTGKRIVREIFDHEPPQPIVYEWIML-GQKGAMSSSSGVVVSISDMLK 292
Query: 304 VYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRI 363
V PEV RYL T+P ++ + ++Y++ N E R+
Sbjct: 293 VVPPEVLRYLIMRTKPEKHIKFDPAQPLLTLVDEYERLN---------SNTEIEGLNKRV 343
Query: 364 YELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIK--GLPDVKPAQVDRLRTRAECA 421
ELS G+ IPF+H+ + Q+ GD + ++K G +R
Sbjct: 344 LELSHAKGI---CHTDIPFKHMTTIAQVAHGDFDKIMKIIGRAGYDTTNEKCIRELVNNV 400
Query: 422 WNWITDGGAPEEFKFALRAD--GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALY 479
NW+ + AP KF+++ + A L++ E KA ++ E+ + + +Y
Sbjct: 401 ANWL-EMYAPPFAKFSVKDELPEETASLTD-EQKAFLGAVSEIIGDSGELTGEDYHNLVY 458
Query: 480 DAAKECG-----------------LEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLE 522
++KE G + PK MF A+Y +++ + GP+ F+ +I ++ L
Sbjct: 459 -SSKEAGSQLNNKIAAKLGVDDVEINPKDMFKAIYTSVLGQQSGPKAGWFLSSIDQDFLA 517
Query: 523 KIFKD 527
K F +
Sbjct: 518 KRFSE 522
>gi|156937259|ref|YP_001435055.1| lysyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
gi|156566243|gb|ABU81648.1| lysyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
Length = 496
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 152/531 (28%), Positives = 266/531 (50%), Gaps = 53/531 (9%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
+ W ++ ++II++RG + ASG+T SG H+G E I +V+ LR RG + F
Sbjct: 1 MEWLNKIVDEIIKKRGG-RAFVVASGLTTSGPAHLGTLSEFIYPYSIVQELRRRGYDAEF 59
Query: 68 IYSWDDYDVFRKVPANMP-KPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
++ D D F +P + K E L+K+L P+ VPD + E+Y H + ++ +
Sbjct: 60 VFVADIMDAFDDIPQTLKDKEEELKKHLGKPLAEVPDPYGCHESYGEHFLAEFLELMDKF 119
Query: 127 GIHP-EYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWP-VSVFCT 184
GI P E L +E Y +G Y + ++ ++ R+++K I+ K+ +++W V C
Sbjct: 120 GIKPDEVLRASELYAQGWYDDYLRLFVEQRDKVKKIME--ETAMRKLPDDWWGFVKPICE 177
Query: 185 ACNK-DTTKIESWDGDWTLKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFE 242
C + D T ++ +GD + Y CE CGH A+++ + KL WR+DWP R F E
Sbjct: 178 KCGRIDKTVVKKVEGD-KIYYKCEACGHEGAVEVSSHRW-KLAWRLDWPSRQDFLGVDAE 235
Query: 243 PAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVL 302
G DH ++GGS+DTA + ++ PV FRY F+ + G KM+ SKG + +L E++
Sbjct: 236 GGGVDHFTKGGSWDTAKRIHKEVFGKEPPVGFRYGFVLMNG--KKMSKSKG-IGALHEIM 292
Query: 303 EVYQPEVARYLFAGTRPNTEFVISFDLD---VIKIYEDYDKTERIAWKAEKAKNDETFEK 359
+ P V Y + + + +F +D ++++YE+Y + A ++ K
Sbjct: 293 ALLHPSVIMYFI--LKHDIKENKNFKMDPRFLMQLYEEYRRV---------ALGEDEDPK 341
Query: 360 EYRIYELSQ----IDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDRLR 415
R +ELS G + + Y +R + ++ +GD +AV P V+
Sbjct: 342 RRRAWELSGGRVWRAGFADLLVYYQIYRDWKKVGEL-TGDPQAVKDLAPYVE-------- 392
Query: 416 TRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFS 475
W+ G PEE++ ++ + ++S+P K + +R ++MD
Sbjct: 393 -------EWVKRGFVPEEYEVTVK----QGKVSDP--KGCEFLRALAEELREDMDAVEIH 439
Query: 476 TALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFK 526
+Y+ AK+ GL PK F VY+AL+ K++GPR +K IG + +++F+
Sbjct: 440 NKVYEVAKKVGLSPKDAFKFVYKALLDKERGPRAGRLIKAIGVRKAKEMFE 490
>gi|108804999|ref|YP_644936.1| lysyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
gi|108766242|gb|ABG05124.1| lysyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
Length = 492
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 153/522 (29%), Positives = 244/522 (46%), Gaps = 55/522 (10%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIY 69
WA+Q AE + G+ + SGI+ SG +H GN RE++ + V ALR+RG+ VRF++
Sbjct: 9 WAEQVAEGL----GE-GPHVVVSGISTSGHIHAGNLREVLVAEAVANALRARGEEVRFVF 63
Query: 70 SWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIH 129
D D RKV +P E +Y+ + ++ +PD +YA H E L +G+
Sbjct: 64 HADTIDPLRKVAPGIP--ESFGRYMGHSLSHIPDPEGCHPSYAEHFLAPFEEALEEMGME 121
Query: 130 PEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNKD 189
E L E Y+ G+Y E ++A+++ EEL+ I+ ++ E + P A + D
Sbjct: 122 VEVLRSHELYEGGVYTEVTREAIEHTEELRRIMQEV--TGRRMPEGWSPY--LPRAASGD 177
Query: 190 TTK---IESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGK 246
T +E + +++ G+ D K + KLGWRV+ RW FEP GK
Sbjct: 178 LTGNRVVEHLPEESKVRFVDREGNEGVADYSKGEG-KLGWRVELAARWKALGVTFEPFGK 236
Query: 247 DHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQ 306
DH S+GGS DTA ++ ++ +P P + Y++IGLKG G M+SS+G VV ++L +
Sbjct: 237 DHTSRGGSTDTADRMAREVFRYPVPGRYEYEWIGLKG-RGDMSSSRGIVVLPKDLLRIMP 295
Query: 307 PEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYEL 366
P+ R + G P+ DLD+ + F EYR
Sbjct: 296 PDALRRMVLGRDPSRR----ADLDLEGGF-------------------PRFMDEYR---- 328
Query: 367 SQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLP--DVKPAQVDRLRTRAECAW-- 422
S+ + P +PF HL + Q D+E + L A DR + E +
Sbjct: 329 SETEDRP------VPFSHLATVAQTVGDDVELAAEMLRRGGYGRAAEDREKLARELGYAR 382
Query: 423 NWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDE-MDEKTFSTALYDA 481
NW APE +F L + E E + + +L +++E M + LY+
Sbjct: 383 NW-AQRWAPEPVRFRLLSPEESREEMERLEEDQRLYLAALSERLEEGMGPEEIQDLLYET 441
Query: 482 AKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEK 523
A E GL+ K+ F A+Y+ L+ K GP+ F+ + E + +
Sbjct: 442 AHERGLKSKRAFAALYRVLLGKKSGPKAGPFIAALSVETVRE 483
>gi|77165098|ref|YP_343623.1| Lysine--tRNA ligase [Nitrosococcus oceani ATCC 19707]
gi|76883412|gb|ABA58093.1| Lysine--tRNA ligase [Nitrosococcus oceani ATCC 19707]
Length = 641
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 138/509 (27%), Positives = 246/509 (48%), Gaps = 39/509 (7%)
Query: 35 TPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYL 94
TPSG VHVG+ R ++ D + RALR +G + Y DDYD +PA+ L++Y+
Sbjct: 21 TPSGRVHVGSLRGVLIHDALYRALRDKGTEATYQYGIDDYDPLDGLPADAAPS--LQEYM 78
Query: 95 RYPITMVPDTFERD-ENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALD 153
+P+ +P + + A H+ + A+ P +G+ + + Y+ G + + + L+
Sbjct: 79 GHPLCNIPAPAGSNATDLADHYISEFLAIFPELGVDAQVYRMRDIYRSGRFNQAVDAILE 138
Query: 154 NREELKDILNTYRDESHKITEEYW-PVSVFCTACNK-DTTKIESWDGDWTLKYSCE---- 207
+ ++ I Y + SH E W P V C C K TT + ++DG + Y C+
Sbjct: 139 KSDVVRKI---YAEVSHAARPEDWYPFQVICENCGKIGTTIVTAYDGK-EVTYHCKADLV 194
Query: 208 -----CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVS 262
CG+ + + KL W+++W +W E AGKDH ++GGS D A+
Sbjct: 195 SWAQGCGYQGKVSPFDGRG-KLPWKLEWTAKWHTFGITIEGAGKDHCTKGGSRDVAARCL 253
Query: 263 DRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTE 322
I+ P++ Y+F + G KM+SSKG ++ E+ PE+ R+L T P
Sbjct: 254 KEIFGDSPPLNVPYEFFLVSG--AKMSSSKGVGMAAKEIAHFLPPEILRFLIVRTPPKRT 311
Query: 323 FVISFDLD-VIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQ-I 380
S D + +++++ ++D R+ KA+ E E ++ + ++D P +Y +
Sbjct: 312 VNFSTDFEYIVRLFNEHD---RLVQKAQL----EQAHSEKKMLRMIEVD--PVSTAYHPV 362
Query: 381 PFRHLCNLLQINSGDIEAVIKGLPDVKPAQVDR--LRTRAECAWNWITDGGAPEEFKFAL 438
F+ L LLQ+ D+E I+ + + D+ L+ R A W+ D A EE + L
Sbjct: 363 GFQLLIALLQLPHIDVEHEIQKRTEGGLTEQDKENLKKRLSAATYWL-DNYASEEDRIEL 421
Query: 439 RAD--GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAV 496
+A+ + AELS + +A + PK + +E+ + ++D A+ ++ K F A+
Sbjct: 422 QANLPAAAAELSHSQ-RAFLHLLGEKFPK-ESQEEEAYQKLIFDIARLTPIDQKSAFAAI 479
Query: 497 YQALVSKDQGPRLAGFMKTIGKERLEKIF 525
Y+ L+ + QGP+ + +E L + F
Sbjct: 480 YRVLLDQLQGPKGGALFVYLDREFLVQRF 508
>gi|55379735|ref|YP_137585.1| lysyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
gi|68052896|sp|Q5UXX4|SYK_HALMA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|55232460|gb|AAV47879.1| lysyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
Length = 545
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 145/548 (26%), Positives = 248/548 (45%), Gaps = 53/548 (9%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIY 69
WAD A+ I R + G++PSG H+G+F EI+ V ALR RG VR ++
Sbjct: 17 WADSVADAI-EARDPDEPIVIKGGVSPSGVPHIGHFNEIMRGYYVAEALRDRGHEVRQVF 75
Query: 70 SWDDYDVFRKVPANMPKPE------------VLEKYLRYPITMVPDTFERDENYARHHEH 117
+ DD D R VP + + L + L P T +PD F ++Y H
Sbjct: 76 TADDKDRLRAVPRQLADLDWNVVGLGEVDAGALGRNLGKPYTDIPDPFGCCDSYGAHFTA 135
Query: 118 DVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYW 177
++ VG+ E++ E Y G + ++ L+ + +D+L Y++ K+ ++Y
Sbjct: 136 LLQKSAELVGVDVEFVSNTELYADGEFEAVTRRVLERADRARDVLAEYQN---KVDDDYV 192
Query: 178 PVSVFCTACNKDTTKIESWDGD-WTLKYSCE-----------CGHCEALDLRKAKSVKLG 225
P C C K T + + D D ++Y CE CGH LR KL
Sbjct: 193 PFLPQCAECGKITEGVTAVDLDAGEVEYVCEDVEAGDQTIDGCGHEGTATLRDG---KLP 249
Query: 226 WRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVP 285
WR +WP +W FEP GKDH GS+ + V++ + + PV Y++ L G P
Sbjct: 250 WRFEWPAQWEILGVDFEPFGKDHAE--GSWPSGEDVAENVLDIQPPVPMVYEWFTLDGEP 307
Query: 286 GKMASSKGKVVSLAEVLEVYQPEVARYLFA-GTRPNTEFVISFDLDVIKIYEDYDKTERI 344
++SS G V+++ EVL++ +PEV +Y F R +F + ++ ++ +++D+ ER
Sbjct: 308 --LSSSSGNVITVDEVLDILEPEVFKYFFVKDPRKQRDFSVE---NIDQLVDEFDRFERR 362
Query: 345 AWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIK--- 401
++ +A D+ E R Y + D P +IP+ L + + I
Sbjct: 363 YFEEIEASEDDA-ELAERAYPMVVDD--PREQRIRIPYTFAAVLGMTDDPALREQIARKE 419
Query: 402 -GLPDVKPA-QVDRLRTRAECAWNWITDGGAPEEFKFAL-RADGSKAELSEPETKAIKTI 458
+PD P V++ R E A W + EF + L RA+ + + A+ +
Sbjct: 420 GHIPDDAPEWAVEQALARVERAQEWASL--TNNEFNYELKRAEIPEVSFDDATAAALDEL 477
Query: 459 RDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK 518
D + + D + + +Y+ AK ++ + F A Y+ L +GP+L F+ + +
Sbjct: 478 ADFI---AEGHDGEAIQSEIYETAKRNDIDISEFFSAGYRLLFDDTEGPQLGTFIAKLDR 534
Query: 519 ERLEKIFK 526
E + + F+
Sbjct: 535 EFVVERFR 542
>gi|126465019|ref|YP_001040128.1| lysyl-tRNA synthetase [Staphylothermus marinus F1]
gi|126013842|gb|ABN69220.1| lysyl-tRNA synthetase [Staphylothermus marinus F1]
Length = 541
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 159/553 (28%), Positives = 250/553 (45%), Gaps = 52/553 (9%)
Query: 9 HWADQTA----EKIIRERGDLDVYTCASGITPSGTVHVGNFR-EIISVDLVVRALRSRGK 63
HW D+ A EK+++ + + VY G++ SG HVG R EII +++ R L +G
Sbjct: 4 HWIDELADNLYEKLLKRKKE--VYIFNGGLSVSGLQHVGRLRGEIIIPEVLRRILSKKGL 61
Query: 64 NVR---FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
++ +Y+ D + + + P + EKY +P+ VPD +N+ H+ D
Sbjct: 62 KIKQYITLYTQDAWKGKKAQLSAFPNHKEAEKYKGWPLINVPDPHGCHKNWVEHYWEDFG 121
Query: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVS 180
L + +G E K L+ RE+++ +N YR E + P
Sbjct: 122 PYLEEFTDGKIEVVTTTDLYRGKLLEFALKTLEIREKVRKTINKYRGRK-PYPENWIPFE 180
Query: 181 VFCTACNK--DTTKIESWDGDWTLKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWAFE 237
C C + T +E D D ++Y C CG+ DL K L WR++W W
Sbjct: 181 SICGKCGRIDSTEALEIIDHD-KVRYRCRNCGYIGVTDLSNGK---LNWRIEWVGVWWSL 236
Query: 238 KTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGK---MASSKGK 294
FEP GKDH + GGS D+ ++ +Y P Y+++ ++ K M SS
Sbjct: 237 GVDFEPYGKDHATPGGSRDSCVDLAVNVYGIEPPEGIPYEWVAMRTKDKKILDMTSSGFI 296
Query: 295 VVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKND 354
+ E LEV P + R++ T P + ++S ++ Y Y K ERI + EKAKN+
Sbjct: 297 GFTPREWLEVAHPHIYRFIVLRTPPMKKIIVSL-YEIPHYYSQYYKAERIYYGLEKAKNE 355
Query: 355 ETFEKEYRIYELSQIDGM-PECISYQIPFRHLCNLLQINSGDIEAV--IKGLPDVK---- 407
E R YELS G P+ Q+ + HL L QI ++ IK L + K
Sbjct: 356 EEEVLLKRSYELSYPKGEPPKSPPEQVSYTHLAILSQILPRELWRTEGIKRLINTKIIPE 415
Query: 408 -PAQ--VDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRD---- 460
P+Q + R+ E A W+ + APE KF L L EP+ + +KTI +
Sbjct: 416 NPSQYGLQRILETLEKANTWV-EKYAPENMKFQL--------LPEPKPEIVKTIPEKHRI 466
Query: 461 ------SLLPKMDEMDEKTFSTALYDAAKECGL-EPKQMFVAVYQALVSKDQGPRLAGFM 513
LL ++DE +++ A+ A K+ + E K ++ Y+ ++ K GPR A +
Sbjct: 467 ILRKMKELLEQIDEWNDENIKNAMIAATKDLTMNERKMLYENFYKLIIGKTSGPRAAPLL 526
Query: 514 KTIGKERLEKIFK 526
+GKE K FK
Sbjct: 527 ALLGKENSLKYFK 539
>gi|41614885|ref|NP_963383.1| hypothetical protein NEQ087 [Nanoarchaeum equitans Kin4-M]
gi|40068609|gb|AAR38944.1| NEQ087 [Nanoarchaeum equitans Kin4-M]
Length = 595
Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 147/565 (26%), Positives = 264/565 (46%), Gaps = 65/565 (11%)
Query: 10 WADQTA----EKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
WA + A E+ ++ DL CA+ TP+G +H+GN ++I + + + G NV
Sbjct: 47 WAVKIALEAIERAKKKNKDLITVRCAN--TPTGVLHIGNANDVIRAYFIAKVIDILGYNV 104
Query: 66 RFIYSWDDYDVFRKVPANMP-----------KPEVLEKYLRYPITMVPDTFERDENYARH 114
R +++ DD D R P+ + K E +KY +P+ +PD F+ +++ H
Sbjct: 105 RLVFTSDDRDPMRGFPSKIADKYGNIVDFKEKHEYEQKYDGFPVARIPDPFKCHSSWSEH 164
Query: 115 ------HEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDE 168
E ++ ++ I EY + Y G++ +KKAL+N++++ +IL +++
Sbjct: 165 FISIYFKEFELLGIID--NIRFEYYSPSILYNTGLWENLVKKALENKDKINEILREHKEH 222
Query: 169 SHKITEEYWPVSVFCTACNK--DTTKIESWDGDWTLKYSCECGHCEALDLR----KAKSV 222
+ +P SV C CN+ T I ++Y CE H + ++ K K+
Sbjct: 223 VRE-----YPFSVICENCNRIGSTHVINYNPKTKEVEYICESRHLKKKTIQGCGYKGKTT 277
Query: 223 ----KLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDF 278
KL W V+W M WA+ T EP GKDH+ S+ + ++ ++N P+ Y+F
Sbjct: 278 IRNGKLDWYVEWAMDWAYFDTDVEPMGKDHYVS--SWKISPKIAKEVFNIEPPIPVVYEF 335
Query: 279 IGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFD--LDVIKIYE 336
+ G KM+ SKG + +L E L++ + EV YL+ RP T I + ++K Y+
Sbjct: 336 FTVDG--KKMSGSKGNIYNLTEFLKIMEKEVVLYLYT-KRPTTHRDIKMENIPSLVKEYD 392
Query: 337 DYDKTERIAWKAE-KAKNDETFEKEYRIYELSQIDGMPECISYQ---------IPFRHLC 386
+ +K + E K +N+E Y + + S +P+ I Y +P +L
Sbjct: 393 ELEKKVLLHLSGENKIENEEII--VYYLTKGSIPKEIPKKIEYSTAAIIGQIVLPKEYLI 450
Query: 387 NL---LQINSGDIEAVIKGLPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGS 443
N ++ +E + + + D R A W G PE K +
Sbjct: 451 NTHLPIKFEEEVLERIKRAFDRINIPLKDYNLERLRKATYWAITYG-PERVKIKPNYERI 509
Query: 444 KAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSK 503
L + E +A++ I + L KM D + T++++ KE +PK+ + +Y+ L++K
Sbjct: 510 TIPLDKNELQALEKIIE-YLEKMKHYDMEEIQTSIHNIIKE-HTDPKKFYPKLYKMLINK 567
Query: 504 DQGPRLAGFMKTIGKERLEKIFKDY 528
+QGP++A + +GKE + KI +Y
Sbjct: 568 EQGPKIASLIIALGKEEIIKILSNY 592
>gi|15790879|ref|NP_280703.1| LysS [Halobacterium sp. NRC-1]
gi|27805748|sp|Q9HNN7|SYK_HALSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|10581446|gb|AAG20183.1| lysyl-tRNA synthetase [Halobacterium sp. NRC-1]
Length = 548
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 149/545 (27%), Positives = 242/545 (44%), Gaps = 55/545 (10%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRF 67
L WAD A++++ + + GI+PSG H+GN EI+ V LR RG VR
Sbjct: 16 LFWADAAADRVLDGDPEEPI-VIKGGISPSGVPHLGNMNEIMRGYFVAAVLRERGHEVRQ 74
Query: 68 IYSWDDYDVFRKVPANMPKPE------------VLEKYLRYPITMVPDTFERDENYARHH 115
+++ DD D R +P + + L + L P T +PD F ++Y H
Sbjct: 75 VFTSDDRDPLRGLPRKLADLDGEVVALGDVNAGALGQNLGAPYTEIPDPFGCCDSYGAHF 134
Query: 116 EHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEE 175
+ +++ R+G+ E + E Y G + E + L++ +D+L Y+D K+ EE
Sbjct: 135 SNLIQSSADRLGVDVEMVSNTETYANGGFEEVTRYLLEHVTAARDVLGEYQD---KVDEE 191
Query: 176 YWPVSVFCTACNKDTTKIESWDGD-WTLKYSCE-----------CGHCEALDLRKAKSVK 223
Y P + C AC K T + D D T++Y C CGH LR+ K
Sbjct: 192 YVPFNPICEACGKVTETVTDVDADAGTVEYVCTDMDAGDQTIEGCGHEGTATLREG---K 248
Query: 224 LGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKG 283
L WR +WP +W +EP GKDH GS+ + + +S + P Y++ L G
Sbjct: 249 LPWRFEWPAQWRTLGVDYEPFGKDHAE--GSWPSGTDISRNVLGDEPPTPMVYEWFTLDG 306
Query: 284 VPGKMASSKGKVVSLAEVLEVYQPEVARYLFA-GTRPNTEFVISFDLDVIKIYEDYDKTE 342
P +SS G V+ + +VL + + V RY F+ R +F I LD ++ +++D+ E
Sbjct: 307 EP--FSSSAGHVILVQDVLALLELPVVRYFFSKDPRRARDFSIE-HLD--QLVDEFDRME 361
Query: 343 RIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG 402
R+ + +++ E+ R+Y L +D + + +IPF L + I
Sbjct: 362 RVYFGEAADASEDERERAARVYPL-LVDDI-DADRVRIPFTFAAVLGMTEDSALREEIAR 419
Query: 403 LPDVKPAQVDRLR-----TRAECAWNWITDGGAPEEFKFAL-RADGSKAELSEPETKAIK 456
PA D TR E A W EF + L RA+ + + A+
Sbjct: 420 REGHIPADADADTVADALTRVERAREWARRTN--NEFNYRLARAEIPAHDFDDATAAAL- 476
Query: 457 TIRDSLLPKMDEMDE--KTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMK 514
D L +D+ D + +Y+AAK ++ F A Y+ +DQGP+L F+
Sbjct: 477 ---DELAAFLDDEDPDGEALQGEIYEAAKRHDIDIGAFFAAGYRLFFDEDQGPKLGPFLA 533
Query: 515 TIGKE 519
+ +E
Sbjct: 534 KLDRE 538
>gi|76801778|ref|YP_326786.1| lysine--tRNA ligase [Natronomonas pharaonis DSM 2160]
gi|90103017|sp|Q3IRL7|SYK_NATPD Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|76557643|emb|CAI49226.1| lysine--tRNA ligase [Natronomonas pharaonis DSM 2160]
Length = 545
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 139/529 (26%), Positives = 236/529 (44%), Gaps = 53/529 (10%)
Query: 29 TCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPKPE 88
T G++PSG H+G+F EI+ V ALR RG VR +++ DD D RK+P + +
Sbjct: 34 TIKGGVSPSGVPHLGHFNEIMRGYFVAEALRERGYEVRQVFTTDDKDRLRKLPRKLADLD 93
Query: 89 ------------VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQA 136
L + L P T +PD F ++Y H + +G+ + +
Sbjct: 94 WNVVGLGEVDAGALGRNLGRPYTDIPDPFGCCDSYGAHFTELLRRSAEAIGVPIDLVSNT 153
Query: 137 ERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNKDTTKIESW 196
E Y G + ++ AL NR+ +++L+ ++D K+ +EY P C C T +
Sbjct: 154 ELYAGGDFDAAVEDALANRDTAREVLSEFQD---KVDDEYVPFFPQCAECGLLTETVTDI 210
Query: 197 D-GDWTLKYSCE-----------CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
D D T+ Y C CGH R KL WR +WP +W FEP
Sbjct: 211 DLDDGTVGYVCSDVEAGDDVIEGCGHEGRATFRAG---KLPWRFEWPAQWRVLGVDFEPF 267
Query: 245 GKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEV 304
GKDH GS+ + VS +++ PV Y++ L G ++SS G ++++ EVLE+
Sbjct: 268 GKDHAE--GSWPSGKAVSREVFDTEPPVPMVYEWFTLNG--DALSSSAGNIITVDEVLEL 323
Query: 305 YQPEVARYLFA-GTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRI 363
+P V RY F + +F +S +LD + +++D+ E + E ++DE + R
Sbjct: 324 LEPAVLRYFFTKNPKKQRDFDVS-NLD--RFVDEFDRFEAGYFGDESVEDDERARAD-RA 379
Query: 364 YELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG----LP-DVKPAQVDRLRTRA 418
Y + +D +PE +IP+ L + D+ + +P D Q++R R
Sbjct: 380 YPMV-VDELPERQPVRIPYTFAAVLGMTDDRDLRLQMAQRSGHIPDDATDDQIERALERV 438
Query: 419 ECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTAL 478
E A W EF + L + A+ + + + + D++T +
Sbjct: 439 EKARAWAVR--TDNEFNYRLAETLPAVDFDAETAAALDEL--AAFVETESPDDETLQGEI 494
Query: 479 YDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK----ERLEK 523
Y+ AK ++ +F A Y+ + + +GPRL + + + ERL +
Sbjct: 495 YETAKRNDVDVGDLFSAGYRLFLDESEGPRLGPLLSAMDETFVVERLRR 543
>gi|153894179|ref|ZP_02014763.1| lysyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
gi|151586777|gb|EDN50200.1| lysyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
Length = 567
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 144/542 (26%), Positives = 242/542 (44%), Gaps = 53/542 (9%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIY 69
WAD A++I R + G++PSG H+GNF EI+ V LR RG VR ++
Sbjct: 37 WADVVADEI-EARDPDEPIVIKGGVSPSGVAHLGNFNEIMRGYFVAAVLRERGHEVRQVF 95
Query: 70 SWDDYDVFRKVPANMPKPE------------VLEKYLRYPITMVPDTFERDENYARHHEH 117
+ DD D RK+P + P+ L + L P T +PD F ++YA H
Sbjct: 96 TSDDKDPLRKIPRKLANPDGEIVGLGEVDAGALGRNLGKPYTAIPDPFGERDSYAAHFAA 155
Query: 118 DVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYW 177
++A R+ I E + E Y G + + ++ L + + ++++L+ Y+D K+ EY
Sbjct: 156 LLKADADRLEIPVEMVSNTELYADGAFDDVTRRVLSDLDGVREVLSQYQD---KVDGEYV 212
Query: 178 PVSVFCTACNKDTTKIESWDGDW-TLKYSCE-----------CGHCEALDLRKAKSVKLG 225
P + C C K T + S D D T++Y C CGH R+ KL
Sbjct: 213 PFNPVCGECGKITETVTSVDLDAETVEYVCTDMDVGDNTIEGCGHEGTATFREG---KLP 269
Query: 226 WRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVP 285
WR++WP +W FEP GKDH GS+ + V+ + PV Y++ L G P
Sbjct: 270 WRLEWPGQWDVLGVDFEPFGKDHAE--GSWPSGVDVARNVLGIEPPVPMVYEWFTLNGEP 327
Query: 286 GKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERI- 344
++SS G +V+++E+L++ +P V RY FA P + DLD+ ++ + D+ +R
Sbjct: 328 --LSSSAGNIVTVSELLDLLEPAVLRYFFA-LHPKK----ARDLDIERLDQLVDRFDRFE 380
Query: 345 -AWKAEKAKNDET-FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIK- 401
A+ E D T F + + + + D P ++P+ L ++ +
Sbjct: 381 RAYFGEVDDEDLTAFAERAYPFVVRRADDPPTEKPVRLPYTFAAVLGMVDDPAFRERLAR 440
Query: 402 ---GLP-DVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKT 457
+P D V+ R E A NW E+ + L+ + A+ + A+
Sbjct: 441 DEGHIPDDASDETVEAALARVEKARNWAER--TANEYDYRLQTELPDADFDDDVAAALDD 498
Query: 458 IRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+ + + D + +Y+ A+ +E F A Y+ QGPRL F+ +
Sbjct: 499 LAEFVAAG---HDGEAIQAEIYETARAHDVEVSDFFAAGYRLFFDDTQGPRLGEFLGELE 555
Query: 518 KE 519
++
Sbjct: 556 RD 557
>gi|111221235|ref|YP_712029.1| Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysS) [Frankia alni
ACN14a]
gi|111148767|emb|CAJ60443.1| Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysS) [Frankia alni
ACN14a]
Length = 625
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 112/395 (28%), Positives = 179/395 (45%), Gaps = 46/395 (11%)
Query: 167 DESHKITEEYWPVSVFCTACNKDTTKIESWD-----GDWTLKYSCE-CGHCEALDLRKAK 220
DE Y+P +C C +DTT + S+D GD YSC CG+ D+R
Sbjct: 236 DEGSASASAYFPFRPYCEVCGRDTTVVASFDPAAGQGD----YSCSACGNHGRFDVRGPA 291
Query: 221 SVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIG 280
+ KL W+VDWPMRWAFE FE G DH S G SF + ++ PV Y F+G
Sbjct: 292 NGKLVWKVDWPMRWAFENVAFEAGGVDHSSPGSSFTVGGSIVREVFGGEPPVYLPYSFVG 351
Query: 281 LKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDK 340
++G K++ S G + A+ L + +P + R+++A RPN + F +V+++Y+++D
Sbjct: 352 VRG-RAKLSGSAGGAPTPADALHILEPAIVRWIYARRRPNQAITVDFGAEVLRVYDEWDA 410
Query: 341 -TERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAV 399
R+ A + + + E +D P + PFR L ++ I + D +
Sbjct: 411 LNRRVGDGAAEPAENTVVARSRGTVEGGPVDA-PRTV---FPFRLLSSICDITADDPTQI 466
Query: 400 IKGLPDVK----------------PAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGS 443
++ L + P +D L+ R + A W T P E + +R +
Sbjct: 467 LRILRQARGSDAAGGSGADAAGQAPFSLDDLQPRLDAARAW-TREHVPAEQRTIVRTEPD 525
Query: 444 KAE---LSEPETKAIKTIRDSLLP--KMDEMDEKTFST--------ALYDAAKECGLEPK 490
+A LS ETKA+ + D L +D + T++ A A E +
Sbjct: 526 RAALAGLSADETKALAILVDGLEEDWSLDGLTTLTYAVPKLLRGLPADAPATTELKQAQR 585
Query: 491 QMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIF 525
FV +Y+ LV +D GPRL + +G ER+ +
Sbjct: 586 AFFVLIYRLLVGRDTGPRLPTLLLAVGPERIRTLL 620
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 11 ADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYS 70
AD+ E+ + G V CASGI+PSG +H+GN REI+ LV +RSRG I S
Sbjct: 12 ADEAIERAQQRPGGAKV-VCASGISPSGPIHLGNLREILVPHLVAEEIRSRGVPCEHILS 70
Query: 71 WDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHP 130
WDDYD RKVPA +P +++ P+T VPD + ++A + L R+GI
Sbjct: 71 WDDYDRLRKVPAGVPAD--FAEHVGRPLTAVPDPWGEFPSWAERFKAPFRDALRRLGIEV 128
Query: 131 EYLYQAERYQKGMYAEGMKKALDNREELKDILNTYR 166
+ Q E Y+ G YA+G+ +A+ + IL YR
Sbjct: 129 REISQTEMYRSGAYADGIARAIAAAPTIDGILGRYR 164
>gi|110667072|ref|YP_656883.1| lysine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
gi|109624819|emb|CAJ51227.1| lysine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
Length = 555
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 135/537 (25%), Positives = 233/537 (43%), Gaps = 45/537 (8%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIY 69
WA A++I E D G++PSG H+GNF E++ + LR RG VR ++
Sbjct: 27 WAATAADEI-EETDPTDPIVIKGGVSPSGVAHLGNFNEVMRGYYIAEVLRERGHEVRQVF 85
Query: 70 SWDDYDVFRKVPANMPKPE------------VLEKYLRYPITMVPDTFERDENYARHHEH 117
+ DD D R +P + L + L P T +PD F ++YA H
Sbjct: 86 TSDDRDPLRSLPQRLADDTGEIVGLGDVDAGALGRNLGRPYTDIPDPFGESKSYAAHFTK 145
Query: 118 DVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYW 177
+ A R+ I E + E YQ+G + E +K L++ + +++L+ Y+ K+ E+Y
Sbjct: 146 LLAADADRLDIPVEIISNTEYYQEGKFEESIKCILEDIDTAREVLSEYQS---KVDEDYV 202
Query: 178 PVSVFCTACNKDTTKIESWDGD-WTLKYSCE-----------CGHCEALDLRKAKSVKLG 225
P + C C K T + D D T+ Y C CGH R+ KL
Sbjct: 203 PFNPLCQNCGKITETVTDIDLDAQTVTYHCTDMTAGERAIEGCGHEGVATFREG---KLP 259
Query: 226 WRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVP 285
WR +WP +W FEP GKDH GS+ + + +++ + + P+ Y++ +
Sbjct: 260 WRFEWPAQWQILDVDFEPFGKDHAE--GSWPSGTDIAENVLDTVPPIPMVYEWFTVND-- 315
Query: 286 GKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIA 345
++SS G +V++ E+L + +P V RY FA + +LD ++ +D+D+ ER
Sbjct: 316 ESLSSSTGNIVTVTELLTLLEPAVIRYFFALDPRRARDLDLENLD--QLVDDFDRFERAY 373
Query: 346 WKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIE-AVIKGLP 404
+ ++ F ++ Y + ID E + F + + S IE A +G
Sbjct: 374 FDGVNDESINEFAEQAYPYVVENIDS--ERVRLPYTFAAVLGMTDDRSLQIEMARNEGHI 431
Query: 405 DVKPAQ--VDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL 462
D + + V R E A W ++ + + KA+ T+ + +
Sbjct: 432 DAETPEWAVTDALNRIEKARIWAERMDNTYNYQLQETQPAIDIDPTSDTAKALDTLAEVV 491
Query: 463 LPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ D + A++D A++ + + F YQ ++ GPRL F+ + E
Sbjct: 492 ---AEGSDGEEIQEAIFDIARDYDIPVGEFFEVGYQLFFNQSAGPRLGKFLGELDAE 545
>gi|119719696|ref|YP_920191.1| lysyl-tRNA synthetase [Thermofilum pendens Hrk 5]
gi|119524816|gb|ABL78188.1| lysyl-tRNA synthetase [Thermofilum pendens Hrk 5]
Length = 537
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 141/540 (26%), Positives = 241/540 (44%), Gaps = 43/540 (7%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFR-EIISVDLVVRALRSRGKNVR 66
+HW AE + + V G++ SG HVG R EI VD VVR LR G +
Sbjct: 1 MHWVKGVAESVASRAREKGVVVANGGLSVSGLQHVGRLRGEITVVDTVVRLLRREGYDAV 60
Query: 67 F---IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVL 123
+Y+ D + + PE Y P+ MVPD N+ H+ + + L
Sbjct: 61 HKLTLYTVDAWKGKEAQRSQFGDPEEARAYTGRPLYMVPDPHGCHANWVEHYWDEFGSHL 120
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKK-----ALDNREELKDILNTYRDESHKITEEYWP 178
+ + E Y+ E MKK D RE++ + +N YR E K+ Y P
Sbjct: 121 GSFAEKVDVVTTKELYESD---ERMKKFVLLSVTDLREKVVETINKYRGEK-KLQPGYIP 176
Query: 179 VSVFCTACNK-DTTK-IESWDGDWTLKYSCE-CGHCEALDLRKAKSVKLGWRVDWPMRWA 235
C C + DTT+ +E ++ ++Y C CGH L K K L WRV+W W
Sbjct: 177 FQPICEKCGRVDTTEALEVDAANYRVRYVCRHCGHEGWQSLAKGK---LNWRVEWVGVWY 233
Query: 236 FEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVP---GKMASSK 292
FEP GKDH + GGS D+ + +++++Y + P+ Y+++G + G M SS
Sbjct: 234 ALGVDFEPYGKDHATPGGSRDSCNELAEKVYGFNPPLGLAYEWVGYRKQGKDMGDMGSSD 293
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAK 352
S + LEV + EV RY++ P V+S + +V Y+ +DK ER+ + E+
Sbjct: 294 FIGFSPRQWLEVAEGEVLRYIYLSAPPMRRIVLSLE-EVPSYYDTFDKAERVYYGLEEGD 352
Query: 353 NDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQI---NSGDIEAVIKGLPDVKPA 409
+ YEL+ + P +Q+ + + L Q+ D+ V++ L K
Sbjct: 353 KEAA-----ESYELALLAKPPSEPPFQLRYLNAMILTQVLPSKGEDLGEVVERLKSTKQL 407
Query: 410 -------QVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL 462
V+R++ R A W+ + APE ++ + + E+ + + I + +L
Sbjct: 408 TRELTEYDVERIKRRIRLARRWL-ELYAPEYYRITVVEEPPLTEIEKVMDERISQLLAAL 466
Query: 463 LPKMDEMD---EKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
L + ++ E+ A+ + + E K++F +Y + + GPR+A ++ + ++
Sbjct: 467 LDSLQRLEVWNEEEIKKAMV-SIERTKEEEKKLFQVLYLSFFGRPSGPRIAPYLGMLDRD 525
>gi|147920461|ref|YP_685748.1| lysyl-tRNA synthetase (lysine--tRNA ligase) (LysRS) [uncultured
methanogenic archaeon RC-I]
gi|110621144|emb|CAJ36422.1| lysyl-tRNA synthetase (lysine--tRNA ligase) (LysRS) [uncultured
methanogenic archaeon RC-I]
Length = 542
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 140/557 (25%), Positives = 248/557 (44%), Gaps = 70/557 (12%)
Query: 10 WADQTAEKIIRERG------DLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGK 63
WAD A+++I G D V CA+ +PSG H+GN +I+ + +L+S G
Sbjct: 7 WADTLADEVIERYGKDGEVDDTVVVKCAA--SPSGGKHIGNINDILRGYFIKESLKSMGV 64
Query: 64 NVRFIYSWDDYDVFRKVPANMPKPE------------VLEKYLRYPITMVPDTFERDENY 111
R +++ DD D RK+P MP E L KY+ P VPD F +++
Sbjct: 65 RTRHVHTSDDRDPLRKIPERMPDREGNWKILTEQELKELNKYVGLPYVHVPDPFGCCKSW 124
Query: 112 ARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHK 171
A H + + +G+ E Y +G + + L + +++++ Y+ +
Sbjct: 125 AEHFNNVWLDGVRSLGVEVEDYSNHALYNEGKFEAPTRTILSDIPLAREVISKYQKNT-- 182
Query: 172 ITEEYWPVSVFCTACNKDTTKIESWDGD-WTLKYSCE------------CGHCEALDLRK 218
E+Y P + C C + T K S D D WT+ Y CE CGH L
Sbjct: 183 -PEDYIPFNPICENCGRITAKAVSVDLDNWTVDYVCESKSLAGEFEVPGCGHKGTTSLNN 241
Query: 219 AKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDF 278
KL WR +WP +W EP GKDH+ GS+ + +S I PV Y+F
Sbjct: 242 G---KLPWRFEWPSQWQIFDVKMEPFGKDHYE--GSWPSGQEISKVILKRQPPVYSVYEF 296
Query: 279 IGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFA---GTRPNTEFV-ISFDLDVIKI 334
+ KM++ G V ++ ++ +PE Y ++ + N E I+F +D
Sbjct: 297 FLVNS--AKMSTRHGNVYITQDMNKIMEPEAFLYFYSLNPMKQKNLEVKNINFLVD---- 350
Query: 335 YEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSG 394
+D+ ER+ + +A + E E R+Y + I+ + +IP+ ++ ++
Sbjct: 351 --GFDRFERLYYNEVEAADAEEKELADRVYPMLPIEKRRKI---RIPYT-FAAMVSVSKN 404
Query: 395 DIEAVIKGL-------PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGS-KAE 446
+ E +++ L D Q TR + A W + G PEE+ +++ D A+
Sbjct: 405 E-EHILRTLKKTGHLPADATKEQEQDALTRVKLAGYWARNFG-PEEYNISIKEDLEIPAD 462
Query: 447 LSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQG 506
+++ E A++ + D + + E + + +++ AK ++P ++F Y L+ K +G
Sbjct: 463 ITDAEKDALREMADYIEARHTEEETQ---YEIFEMAKRRDIKPARLFKTAYTLLLGKPRG 519
Query: 507 PRLAGFMKTIGKERLEK 523
P+L F+ + E + K
Sbjct: 520 PKLGPFVLALDTEFVTK 536
>gi|77025004|gb|ABA61430.1| lysyl-tRNA synthetase [uncultured marine group II euryarchaeote
HF70_39H11]
Length = 598
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 142/602 (23%), Positives = 268/602 (44%), Gaps = 109/602 (18%)
Query: 8 LHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRAL--RSRGKNV 65
+HWAD A K + RG+ V ASGITPSG H+G+ REI++ D++ RA ++ N+
Sbjct: 1 MHWADSIA-KALSHRGNDHV--IASGITPSGEFHIGHLREILTSDIIKRACLHQNPDANI 57
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPD-------TFERDEN-----YAR 113
+F++ DD D RKV + + E+++ + + +P FER N YA
Sbjct: 58 QFVFFVDDADPLRKVYSFLDNS--YEQFIGHQLAKIPPPDKNGAPDFERFNNGKGMSYAD 115
Query: 114 HHEHDVEAVLPRVGIH-PEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKI 172
+ + L +G+ EY+ + Y+ G + + + A + +++++I+ R ++
Sbjct: 116 YFLEPFKQALEILGVEIDEYISNYQAYKTGKFTDQARAACNQADQIREIIE--RVSGREL 173
Query: 173 TEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPM 232
E+++P + D + W+ D + + G+ D+ K + KL WR+DWP
Sbjct: 174 DEDWFPWNPIDAEGCMDGITVTGWE-DPIVHWKDSNGNTGQSDVTKGEG-KLPWRIDWPA 231
Query: 233 RWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSK 292
+WA+ K EP GKDH + GGS+DT + +++ P Y++I LKG G M+SS
Sbjct: 232 KWAWRKVTMEPFGKDHGAAGGSYDTGKEIVG-LFDALPPYPTTYEWISLKGA-GAMSSST 289
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLD--VIKIYEDYDK---------- 340
G + E L + PE+ RYL A ++P I FD +I++ ++Y +
Sbjct: 290 GVTIGPLESLRLVPPEIMRYLIARSQPKRH--IDFDTGNALIELADEYQRKMSNVHILPE 347
Query: 341 -----------------------TERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECIS 377
+ + W +K ++ E + Q+ E ++
Sbjct: 348 PGASKRQIKAHEVGLSQLVYSAVSSELGWAVKKFVSEVGQEN---LKTSQQLKIAFENLT 404
Query: 378 YQIPFRHLCNLLQINSGDI---EAVIKG----------------LPD--VKP-----AQV 411
++ FRHL + Q+ D E++++ +PD V P + +
Sbjct: 405 -KVSFRHLALIAQLRENDADVWESLLRSGLIIDSQYHDYTEGMIVPDDIVNPDLSENSSI 463
Query: 412 DRLRTRAECAWN-----------WITDGGAPEEFKFALR---ADGSKAELSEPETKAIKT 457
+ + AWN WI PE F+ ++ +DG+K + + + +
Sbjct: 464 NLIVQSHVEAWNNLPLRLELMRNWINSPHFPEGFRLRIQDEISDGAKENIDSRDLQYLIE 523
Query: 458 IRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
++ +L E + T + + + AK+ + + F +Y + ++ GP+LA + +
Sbjct: 524 LQQAL--SSCEWESGTINNHVCELAKQKSMSLRDTFELLYWIFLDQNFGPKLANILAEMS 581
Query: 518 KE 519
++
Sbjct: 582 RD 583
>gi|34580573|ref|ZP_00142053.1| lysyl-tRNA synthetase [Rickettsia sibirica 246]
gi|28261958|gb|EAA25462.1| lysyl-tRNA synthetase [Rickettsia sibirica 246]
Length = 522
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 135/506 (26%), Positives = 225/506 (44%), Gaps = 41/506 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T +PDTF E+Y + + + L + G E+ Y+ GM+ E +
Sbjct: 100 AQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLIM 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K IE WD T+ Y +
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIEKWDAKAGTVTYKDK 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G+ + + KL W+ D+ MRWA K +E GKDH A L S+ RI
Sbjct: 217 AGNYIEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDH------LANARLYSEICRI 269
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P
Sbjct: 270 LGGKPPVQLCYELFLDENG--EKISKSKGNSISIDDWLK-YAPVESMALFMYQNPTRAKR 326
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + E ++ + ++AK Y I+ +P+ ++ I +
Sbjct: 327 LFFDVIPKNVDEYITFNQKYHLEEDRAK--RFANPVYHIHH----GNVPKIETFGITYSL 380
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL + + ++V+ G P P L AE A + D ++
Sbjct: 381 LLNLTSVCNPSDKSVLWGFISKYEPKATPNTNPYLDHLAEFAIRYYND---------FIK 431
Query: 440 ADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQ 498
A S SE ++ I D L D+ + + A+YD + G E + F +YQ
Sbjct: 432 AHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYENLRDYFKDLYQ 491
Query: 499 ALVSKDQGPRLAGFMKTIGKERLEKI 524
L+ +++GPRL F+K G + ++K+
Sbjct: 492 ILLGQNEGPRLGTFIKLYGVQEMKKL 517
>gi|42453642|ref|ZP_00153549.1| COG1384: Lysyl-tRNA synthetase (class I) [Rickettsia rickettsii]
Length = 522
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 134/506 (26%), Positives = 224/506 (44%), Gaps = 41/506 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T +PDTF E+Y + + + L + G E+ Y+ GM+ E +
Sbjct: 100 AQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLIM 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K IE WD T+ Y +
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIEKWDAKAGTVTYKDK 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G+ + + KL W+ D+ MRWA K +E GKDH A L S+ RI
Sbjct: 217 AGNYIEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDH------LANARLYSEICRI 269
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P
Sbjct: 270 LGGKPPVQLCYELFLDENG--EKISKSKGNSISIDDWLK-YAPVESMALFMYQNPTRAKR 326
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + E ++ + ++AK Y I+ +P+ ++ I +
Sbjct: 327 LFFDVIPKNVDEYITFNQKYHLEEDRAK--RVANPVYHIHH----GNVPKIETFGITYSL 380
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL + + ++V+ G P P L AE A + D ++
Sbjct: 381 LLNLTSVCNPSDKSVLWGFISKYEPQATPNTNPYLDHLAEFAIRYYND---------FIK 431
Query: 440 ADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQ 498
A S SE ++ I D L D+ + + A+YD + G + F +YQ
Sbjct: 432 AHKSYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYANLRDYFKDLYQ 491
Query: 499 ALVSKDQGPRLAGFMKTIGKERLEKI 524
L+ +++GPRL F+K G + ++K+
Sbjct: 492 ILLGQNEGPRLGTFIKLYGVQEMKKL 517
>gi|109728307|ref|ZP_01379718.1| hypothetical protein RbelO_01000498 [Rickettsia bellii OSU 85-389]
Length = 522
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 134/507 (26%), Positives = 219/507 (43%), Gaps = 37/507 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSNIKTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
Y+ P+T +PD F E+Y + + + L + G E+ E Y+ GM+ E + +
Sbjct: 100 AGYMDMPLTSIPDPFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTEMYKAGMFDEMLIR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGDW-TLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K I WD T+ Y E
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIHKWDAKLGTITYKDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYN 267
G + + K KL W+ D+ MRWA K +E GKDH + G + RI
Sbjct: 217 NGETIEVPVTKGH-CKLQWKPDFSMRWAALKVDYEMYGKDHLANGRLYSEIC----RILG 271
Query: 268 WPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVIS 326
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P +
Sbjct: 272 GKPPVQLCYELFLDENG--EKISKSKGNSISVDDWLK-YAPVESMALFMYQNPTRAKRLF 328
Query: 327 FDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLC 386
F DVI D T + E+ + Y I+ +P+ ++ I + L
Sbjct: 329 F--DVIPKNVDEYITFNQKYHLEEDRTKRFANPVYHIHH----GNVPKIETFGITYSLLL 382
Query: 387 NLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRAD 441
NL + + ++V+ G P P L AE A + D ++A
Sbjct: 383 NLTSVCNPSDKSVLWGFISRYEPKAMPNNSPYLDHLAEFAIRYYND---------FVKAH 433
Query: 442 GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQAL 500
S SE ++ I D L ++++ ++ +YD + G E + F +YQ L
Sbjct: 434 KSYLAPSEKHKAILQDILDMLKGLPEQIEAESIQKGIYDIGMKAGYENLRDYFKDLYQIL 493
Query: 501 VSKDQGPRLAGFMKTIGKERLEKIFKD 527
+ + GPRL F+K G K+ ++
Sbjct: 494 LGQSDGPRLGTFIKLYGISETMKLIEE 520
>gi|91205686|ref|YP_538041.1| Lysyl-tRNA synthetase [Rickettsia bellii RML369-C]
gi|123084562|sp|Q1RI62|SYK_RICBR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|91069230|gb|ABE04952.1| Lysyl-tRNA synthetase [Rickettsia bellii RML369-C]
Length = 522
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 134/507 (26%), Positives = 219/507 (43%), Gaps = 37/507 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSNIKTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
Y+ P+T +PD F E+Y + + + L + G E+ E Y+ GM+ E + +
Sbjct: 100 AGYMDMPLTSIPDPFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTEMYKAGMFDEMLIR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGDW-TLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K I WD T+ Y E
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIHKWDAKLGTITYKDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYN 267
G + + K KL W+ D+ MRWA K +E GKDH + G + RI
Sbjct: 217 NGETIEVPVTKGH-CKLQWKPDFGMRWAALKVDYEMYGKDHLANGRLYSEIC----RILG 271
Query: 268 WPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVIS 326
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P +
Sbjct: 272 EKPPVQLCYELFLDENG--EKISKSKGNSISVDDWLK-YAPVESMALFMYQNPTRAKRLF 328
Query: 327 FDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLC 386
F DVI D T + E+ + Y I+ +P+ ++ I + L
Sbjct: 329 F--DVIPKNVDEYITFNQKYHLEEDRTKRFANPVYHIHH----GNVPKIETFGITYSLLL 382
Query: 387 NLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRAD 441
NL + + ++V+ G P P L AE A + D ++A
Sbjct: 383 NLTSVCNPSDKSVLWGFISRYEPKAMPNNSPYLDHLAEFAIRYYND---------FVKAH 433
Query: 442 GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQAL 500
S SE ++ I D L ++++ ++ +YD + G E + F +YQ L
Sbjct: 434 KSYLAPSEKHKAILQDILDMLKGLPEQIEAESIQKGIYDIGMKAGYENLRDYFKDLYQIL 493
Query: 501 VSKDQGPRLAGFMKTIGKERLEKIFKD 527
+ + GPRL F+K G K+ ++
Sbjct: 494 LGQSDGPRLGTFIKLYGISETMKLIEE 520
>gi|67458974|ref|YP_246598.1| lysyl-tRNA synthetase [Rickettsia felis URRWXCal2]
gi|75536588|sp|Q4ULZ0|SYK_RICFE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|67004507|gb|AAY61433.1| Lysyl-tRNA synthetase [Rickettsia felis URRWXCal2]
Length = 525
Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 135/506 (26%), Positives = 223/506 (44%), Gaps = 41/506 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSDISTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
Y+ P+T +PD F E+Y + + + L + G E+ Y+ GM+ E + +
Sbjct: 100 AGYMDMPLTSIPDPFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDEMLIR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K IE WD T++Y E
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIEKWDAKAGTVRYKDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G+ + + KL W+ D+ MRWA K +E GKDH A L S+ RI
Sbjct: 217 AGNYVEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDH------LANARLYSEICRI 269
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P
Sbjct: 270 LGGKPPVQLCYELFLDENG--EKISKSKGNSISVDDWLK-YAPVESMALFMYQNPTRAKR 326
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + E ++ + ++AK Y I+ +P+ ++ I +
Sbjct: 327 LFFDVIPKNVDEYITFNQKYHLEEDRAK--RFANPVYHIHH----GNVPKIETFGITYAL 380
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL + + ++V+ G P P L AE A + D ++
Sbjct: 381 LLNLTSVCNPSDKSVLWGFISKYEPKATPKTSPYLDHLAEFAIRYYND---------FIK 431
Query: 440 ADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQ 498
A S SE ++ I D L D+ + + A+YD + G E + F +YQ
Sbjct: 432 AYKSYLAPSEKHKVILQDILDMLSSISDQTEAEAIQKAIYDIGMKAGYENLRDYFKDLYQ 491
Query: 499 ALVSKDQGPRLAGFMKTIGKERLEKI 524
L+ + +GPRL F+K G + K+
Sbjct: 492 ILLGQSEGPRLGTFIKLYGIKETMKL 517
>gi|52698806|ref|ZP_00340214.1| COG1384: Lysyl-tRNA synthetase (class I) [Rickettsia akari str.
Hartford]
Length = 529
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 135/506 (26%), Positives = 220/506 (43%), Gaps = 41/506 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARIVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPHPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
Y+ P+T +PD F E+Y + + + L + G E+ Y+ GM+ E + +
Sbjct: 100 AGYMDMPLTSIPDPFGECESYGHYMNAKLRSFLDKFGFKYEFYSSTNCYKAGMFDEMLIR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +++ ++ L T+R+E + PV C K IE WD T+ Y E
Sbjct: 160 VLEQYDKIMELMLPTFREERKATYSPFMPV---CLKTGKVLQVPIEKWDAKVGTVTYKDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G+ + + KL W+ D+ MRWA K +E GKDH A L S+ RI
Sbjct: 217 AGNYIEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDH------LANARLYSEICRI 269
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P
Sbjct: 270 LGGKPPVQLCYELFLDENG--EKISKSKGNSISVDDWLK-YAPVESMALFMYQNPTRAKR 326
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + E ++ + ++AK Y I+ +P+ ++ I +
Sbjct: 327 LFFDVIPKNVDEYITFNQKYHLEEDRAK--RFANPVYHIHH----GNVPKIETFGITYVL 380
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL + + + V+ G P P L AE A + D ++
Sbjct: 381 LLNLTSVCNPSDKTVLWGFISKYEPKATPNTSPYLDHLAEFAIRYYND---------FIK 431
Query: 440 ADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQ 498
A S SE ++ I D L D+ + + A+YD G E + F +YQ
Sbjct: 432 AHKSYLAPSEKHNVILRDILDMLSDISDQTEAEGIQKAIYDIGMRAGYENLRDYFKDLYQ 491
Query: 499 ALVSKDQGPRLAGFMKTIGKERLEKI 524
L+ + +GPRL F+K G + +K+
Sbjct: 492 ILLGQSEGPRLGTFIKLYGVQETKKL 517
>gi|69938833|ref|ZP_00633206.1| Lysyl-tRNA synthetase (archaeal), class 1c [Paracoccus
denitrificans PD1222]
gi|119384066|ref|YP_915122.1| lysyl-tRNA synthetase [Paracoccus denitrificans PD1222]
gi|119384316|ref|YP_915372.1| lysyl-tRNA synthetase [Paracoccus denitrificans PD1222]
gi|119373833|gb|ABL69426.1| lysyl-tRNA synthetase [Paracoccus denitrificans PD1222]
gi|119374083|gb|ABL69676.1| lysyl-tRNA synthetase [Paracoccus denitrificans PD1222]
Length = 530
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 218/497 (43%), Gaps = 39/497 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALR--SRGKNVRFIYSWDDYDVFRKVPANMPKPEV 89
+G PSG H+G F E+ ++ RA + S F +S DD D RKVP N+P+ E+
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFQIISDIPTRLFCFS-DDMDGMRKVPDNVPQQEM 98
Query: 90 LEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMK 149
L ++L+ P+T VPD F ++ H+ + L G E++ E Y+ G + E +
Sbjct: 99 LRQHLQEPLTTVPDPFGEYGSFGAHNNAMLRRFLDTFGFEYEFISATEFYKSGQFDETLL 158
Query: 150 KALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTK-IESWDGDWTLKYSCE 207
KA + + + ++ L + R+E + + P+S K +++ G T+ + E
Sbjct: 159 KAAEKYDAIMEVMLASLREERQQTYSCFLPISPKTGKVLYVPIKHVDAKAG--TITFDDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYN 267
G L + + VKL W+ D+ RWA FE GKDH + +D RI
Sbjct: 217 DGEELTLPVTGGQ-VKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDGIC----RILG 271
Query: 268 WPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVIS 326
AP F Y+ F+ G K++ SKG +S+ E L E Y F +P T +
Sbjct: 272 GRAPEHFTYELFLDQHG--QKISKSKGNGLSIDEWLTYAATESLSY-FMFQKPKTAKRMY 328
Query: 327 FDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLC 386
FD+ + K ++Y + R A D+T E++ G +PF+ L
Sbjct: 329 FDV-IPKAVDEYHQQLR-------AYPDQTVEQQLANPVWHIHGGEVPASDMVVPFQMLL 380
Query: 387 NLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRAD 441
NL + + + G P+ P L AE A + D AP + RA
Sbjct: 381 NLASVAGAKDKTGLWGFIRRYAPEASPETNPTLDQAAEFAVRYFNDFVAPTR---SFRAP 437
Query: 442 GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQAL 500
+E E +A++ + L D + T ++ +E G EP K F A+YQ L
Sbjct: 438 ------TEIERRALEDLAGRLAAWAQPADAEALQTMVFAIGREHGFEPMKDWFQALYQVL 491
Query: 501 VSKDQGPRLAGFMKTIG 517
+ DQGPR GF+ G
Sbjct: 492 LGADQGPRFGGFIALYG 508
>gi|126302605|sp|Q92IB5|SYK_RICCN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 522
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 132/506 (26%), Positives = 222/506 (43%), Gaps = 41/506 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T +PDTF E+Y + + + L + G E+ Y+ GM+ +
Sbjct: 100 AQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDAMLIM 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K IE WD T+ Y +
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIEKWDAKAGTVTYKDK 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G+ + + KL W+ D+ MRWA K +E GKDH A L S+ RI
Sbjct: 217 AGNYIEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDH------LANARLYSEICRI 269
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P
Sbjct: 270 LGGKPPVQLCYELFLDENG--KKISKSKGNSISIDDWLK-YAPVESMALFMYQNPTRAKR 326
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + E ++ + ++AK Y I+ +P+ ++ I +
Sbjct: 327 LFFDVIPKNVDEYITFNQKYHLEEDRAK--RFANPVYHIHH----GNVPKIETFGITYSL 380
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL + + ++V+ G P P L AE A + D ++
Sbjct: 381 LLNLTSVCNPSDKSVLWGFISKYEPKATPNTNPYLDHLAEFAIRYYND---------FIK 431
Query: 440 ADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQ 498
A SE ++ I D L D+ + + A+YD + G E + F +YQ
Sbjct: 432 AHKLYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYENLRDYFKDLYQ 491
Query: 499 ALVSKDQGPRLAGFMKTIGKERLEKI 524
L+ +++GPR F+K G + ++K+
Sbjct: 492 ILLGQNEGPRFGTFIKLYGVQEMKKL 517
>gi|15892428|ref|NP_360142.1| lysyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
gi|15619581|gb|AAL03043.1| lysyl-tRNA synthetase [EC:6.1.1.6] [Rickettsia conorii str. Malish
7]
Length = 527
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 132/506 (26%), Positives = 222/506 (43%), Gaps = 41/506 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 45 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMV 104
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T +PDTF E+Y + + + L + G E+ Y+ GM+ +
Sbjct: 105 AQYMDMPLTSIPDTFGECESYGHYMNAKLRSFLDKFGFEYEFYSSTNCYKAGMFDAMLIM 164
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K IE WD T+ Y +
Sbjct: 165 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIEKWDAKAGTVTYKDK 221
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G+ + + KL W+ D+ MRWA K +E GKDH A L S+ RI
Sbjct: 222 AGNYIEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDH------LANARLYSEICRI 274
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF P
Sbjct: 275 LGGKPPVQLCYELFLDENG--KKISKSKGNSISIDDWLK-YAPVESMALFMYQNPTRAKR 331
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + E ++ + ++AK Y I+ +P+ ++ I +
Sbjct: 332 LFFDVIPKNVDEYITFNQKYHLEEDRAK--RFANPVYHIHH----GNVPKIETFGITYSL 385
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL + + ++V+ G P P L AE A + D ++
Sbjct: 386 LLNLTSVCNPSDKSVLWGFISKYEPKATPNTNPYLDHLAEFAIRYYND---------FIK 436
Query: 440 ADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQ 498
A SE ++ I D L D+ + + A+YD + G E + F +YQ
Sbjct: 437 AHKLYLSPSEKHKVILQDILDMLSDIADQTEAEAIQKAIYDIGMKAGYENLRDYFKDLYQ 496
Query: 499 ALVSKDQGPRLAGFMKTIGKERLEKI 524
L+ +++GPR F+K G + ++K+
Sbjct: 497 ILLGQNEGPRFGTFIKLYGVQEMKKL 522
>gi|154250888|ref|YP_001411712.1| lysyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
gi|154154838|gb|ABS62055.1| lysyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
Length = 539
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 145/540 (26%), Positives = 217/540 (40%), Gaps = 75/540 (13%)
Query: 10 WADQTAEKII----RERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--SRGK 63
W + A KI+ RE G +G PSG H+G F E+ +V A G
Sbjct: 23 WPFEEARKIVDRLEREGGPDRTVLFETGYGPSGLPHIGTFGEVARTTMVRHAFEILMPGV 82
Query: 64 NVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVL 123
R + DD D RKVP N+P E+L Y+ P+T VPD FE+ ++ H+ + + L
Sbjct: 83 KTRLLCFSDDMDGLRKVPTNVPNQEMLANYINMPLTRVPDPFEKFPSFGEHNNARLRSFL 142
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVS-- 180
G E+ + Y+ G + E + K L +E+ +I L + R+E + PVS
Sbjct: 143 DSYGFEYEFASSTDYYKSGRFDETLLKVLAKFDEIMEIMLPSLREERQQSYSPILPVSPR 202
Query: 181 ----VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLR-KAKSVKLGWRVDWPMRWA 235
+ +D K T+ Y E G E +++ + KL W+ DW MRWA
Sbjct: 203 TGHVLLVPLVARDAAK-------GTVSY-VEPGTNETVEVPVTGGNCKLQWKADWAMRWA 254
Query: 236 FEKTVFEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSK 292
+E AGKD D+ L S R+ P P F Y+ F+ +G K++ SK
Sbjct: 255 ALGVDYEMAGKD------LIDSVKLASRICRVLGAPPPEGFNYELFLDEEG--KKISKSK 306
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFD---------LDVIKIYEDYDKTER 343
G +S+ + L PE +Y F P + FD L + + D ER
Sbjct: 307 GNGLSIEDWLRYASPESLQY-FMFQSPRAGKRLYFDVIPRNVDEYLGALSAFPKQDVRER 365
Query: 344 IAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL 403
+ N+ F + G P I F L NL + + V+ G
Sbjct: 366 L--------NNAAFHIHH---------GNPPAEDLPISFSLLLNLASASHSEDRDVLWGF 408
Query: 404 -----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTI 458
PD P RL A N+ D P + K+ AD +A L E +
Sbjct: 409 IRNYAPDATPENHPRLDDLVGYAINYFHDFVRPAK-KYRAPADLERAALEELAAR----- 462
Query: 459 RDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
L + + +YD K E + F A+Y+ L+ ++QGPR F+K G
Sbjct: 463 ---LEAADADASAEELQNIVYDIGKNHPFEKLRDWFKALYEVLLGEEQGPRFGTFVKLYG 519
>gi|15604238|ref|NP_220754.1| lysyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
gi|6226186|sp|Q9ZDF8|SYK_RICPR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|3860930|emb|CAA14830.1| LYSYL-tRNA SYNTHETASE (lysS) [Rickettsia prowazekii]
Length = 528
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 132/506 (26%), Positives = 222/506 (43%), Gaps = 35/506 (6%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFAENARMVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPHPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T +PD F + ++Y + + A L + G E+ Y+ GM+ E + +
Sbjct: 100 AQYMDMPLTSIPDPFGKCKSYGHYMNAKLCAFLDKFGFKYEFYSSTNCYKAGMFDEMLIR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ + L T+RDE + P+ C K IE WD T+ Y E
Sbjct: 160 VLEKYDEIMALMLPTFRDERKTTYAPFMPI---CPKTGKVLQVPIEKWDAKAGTVSYKDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYN 267
G+ + + KL W+ D+ MRWA K +E GKDH + + RI
Sbjct: 217 DGNDVEVPV-TGGHCKLQWKPDFGMRWAALKVDYEMYGKDHLANSRLYSEIC----RILG 271
Query: 268 WPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
PV F Y+ L K++ S+G +S+ + L+ Y + LF P + F
Sbjct: 272 GKPPVQFCYELF-LDANGEKISKSRGNSISVDDWLK-YASVESIALFMYKNPARAKRLFF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
DL + K ++Y T + E+ Y I+ +P+ ++ + + L N
Sbjct: 330 DL-IPKNVDEY-ITLNQKYHLEEDMVTRFANPVYHIHH----GNVPKIETFGLTYSLLLN 383
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG 442
L + + ++V+ G P P L E A + D ++
Sbjct: 384 LTAVCNTSDKSVLWGFITKYEPKATPNTSTYLDHLTEFAIRYYND---------FIQTHK 434
Query: 443 SKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQALV 501
S +SE + I D L D+ +E++ A+YD + G E + F +YQ L+
Sbjct: 435 SYLVVSEKHKIILHDILDMLSNISDQTEEESIQKAIYDIGMKSGYENLRYYFKDLYQILL 494
Query: 502 SKDQGPRLAGFMKTIGKERLEKIFKD 527
+++GPRL F+K G E +K+ ++
Sbjct: 495 GQNEGPRLGTFIKLYGVEETKKLVEE 520
>gi|154242836|ref|ZP_02024397.1| lysyl-tRNA synthetase [Candidatus Nitrosopumilus maritimus SCM1]
gi|154202631|gb|EDN88603.1| lysyl-tRNA synthetase [Candidatus Nitrosopumilus maritimus SCM1]
Length = 529
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 139/544 (25%), Positives = 239/544 (43%), Gaps = 52/544 (9%)
Query: 10 WADQTAEKII-RERG---DLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
W D+ A +++ RE+ + DV SG+ SG H+G+ + + V AL + G
Sbjct: 12 WIDKLAYELLEREKALGRNTDVLRVESGLGASGIPHIGSLGDAVRAYGVKLALENLGYKS 71
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
I DD D RK+P M K LE+++ P++++PD + ++Y H + L
Sbjct: 72 ELIAYSDDLDGLRKIPEGM-KDFGLEEHIAKPVSLIPDPYGEHDSYGMHMSSILLEGLDE 130
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEYWPVSVFCT 184
VGI E+ + Y++G+ + + L N ++ D I E ++ Y+PV C
Sbjct: 131 VGIKYEFRRAKDTYKQGLLKDQIHTILQNSTKIGDKIAELVGQEKYQKYLPYFPV---CA 187
Query: 185 ACNKDTTK--IESWDGDWTLKYSCE-----------CGHCEALDLRKAKSVKLGWRVDWP 231
CN+ T IE + +KY C CG+ D+ K KL W+V++
Sbjct: 188 NCNRLYTAEAIEYIADEKKVKYRCHDAEIGGKMVKGCGYEGEADITKDLG-KLAWKVEFA 246
Query: 232 MRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASS 291
RW+ FE GKD S V+D I +P P +Y+ KG K++ S
Sbjct: 247 ARWSAFDIRFEAYGKDIMD---SVKVNDWVADEILQFPHPHHVKYEMFLDKG-GKKISKS 302
Query: 292 KGKVVSLAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEK 350
G V++ +E P+ + L+ E + D+ + +Y++ E I + K
Sbjct: 303 LGNVLTAQRWMEFGSPKSILLLLYKRITGARELGLE---DIPSLMSEYNELEDIFFGRIK 359
Query: 351 AKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQI-NSGDIEAVIKGLPDV--- 406
N K +YE + P+ S + +R L L +I E V+K L D
Sbjct: 360 VDNPAKLTKSKGLYEYVNLLNPPKQASTHVNYRLLIELAKIFKENRNERVMKKLLDYGVI 419
Query: 407 --KPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLP 464
++++L A G +EF + ++ +L E KA+K + ++L
Sbjct: 420 KNPEPEIEKLIDLA---------GNYSDEFD---EQEKTQIDLDETSKKALKILSEAL-- 465
Query: 465 KMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKI 524
DE E +T +Y AK ++PK F +YQ ++ +GP++ F+ IG++++ K
Sbjct: 466 GADEEPEDIQNT-IYQIAKSNDVQPKDFFKILYQIILGTSRGPKIGPFISDIGRKQVAKT 524
Query: 525 FKDY 528
+Y
Sbjct: 525 ISEY 528
>gi|83944398|ref|ZP_00956852.1| lysyl-tRNA synthetase [Sulfitobacter sp. EE-36]
gi|83844721|gb|EAP82604.1| lysyl-tRNA synthetase [Sulfitobacter sp. EE-36]
Length = 526
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 132/505 (26%), Positives = 221/505 (43%), Gaps = 36/505 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA R + DD D RKVP N+P P L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFEQISDIPTRLVCFSDDLDGMRKVPGNVPDPAAL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
E++L+ P+T VPD F + +++ H+ + L G E++ E Y G + E + +
Sbjct: 100 EEHLQRPLTSVPDPFGKYDSFGAHNNAMLRRFLDTFGFEYEFISATEFYGSGKFDEVLLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTK-IESWDGDWTLKYSCEC 208
A + +E+ ++ L + R+E + + P+ K + + +G T+ + E
Sbjct: 160 AAEKYDEIMEVMLKSLREERRQTYSIFLPIHPETGRVMYVPMKAVNAKEG--TITFDDED 217
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
G L L +VKL W+ D+ RWA FE GKDH + +D RI
Sbjct: 218 GTEMTLPL-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDKIC----RILGN 272
Query: 269 PAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
P F Y+ F+ G K++ S G +++ E L E Y F +P T + F
Sbjct: 273 RPPEHFTYELFLDQDG--HKISKSSGNGLTIDEWLTYASAESLSY-FMYLKPKTAKRMYF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
D+ + K ++Y + R+ D+ + ++ + D +P+ +PF L N
Sbjct: 330 DV-IPKAVDEYHQQLRVY-----ETQDDKGKLNNPVWHIHGGD-VPKS-DMVVPFSMLLN 381
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG 442
L ++S + ++ + G PD P + AE A + D P + RA
Sbjct: 382 LASVSSAEDKSQLWGFIQRYAPDATPEGNPGMDAAAEHAVRYYNDFVKPAK---VFRAP- 437
Query: 443 SKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVS 502
SE E +A++ +RD L +D +T T ++ KE + F A+Y+ L+
Sbjct: 438 -----SELEREALEDLRDQLKTWDGGLDAETLQTMVFAVGKERFDPLRDWFTALYEVLLG 492
Query: 503 KDQGPRLAGFMKTIGKERLEKIFKD 527
QGPR GF+ G + + D
Sbjct: 493 ASQGPRFGGFIALYGVDETVALIDD 517
>gi|102191919|ref|ZP_01347731.1| hypothetical protein RcanM_01000683 [Rickettsia canadensis str.
McKiel]
Length = 522
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 138/518 (26%), Positives = 222/518 (42%), Gaps = 61/518 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E + +V +A + I DD D RKVP+N+P E+L
Sbjct: 40 TGYGPSGLPHIGTFGENARMVMVQKAFEQLSSIPTKLICFSDDMDGLRKVPSNIPNSEML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T + D F E+Y + + + L + G E+ + Y+ GM+ E + K
Sbjct: 100 AQYMDMPLTSILDPFGEYESYGAYMNAKLRSFLDKFGFEYEFYSSTKCYKAGMFDEMLLK 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ ++ L T+R+E + P+ C K IE WD T+ Y E
Sbjct: 160 VLEKYDEIMELMLPTFREERKATYSPFMPI---CPKTGKVLQVPIEKWDAKRGTVTYKDE 216
Query: 208 ----------CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
GHC KL W+ D+ MRWA K +E GKDH
Sbjct: 217 DNNYIEVPVTGGHC-----------KLQWKPDFGMRWAALKVDYEMYGKDH------LAN 259
Query: 258 ASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLF 314
A L S+ RI PV Y+ F+ G K++ SKG +S+ + L+ Y P + LF
Sbjct: 260 ARLYSEICRILGGKPPVQLCYELFLDENG--EKISKSKGNSISVDDWLK-YAPVESMALF 316
Query: 315 AGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPE 374
P + F DVI D T + E+ + Y I+ +P+
Sbjct: 317 MYQNPTRAKRLFF--DVIPQNVDAYITFNQKYHLEEDRAKRFANPVYHIHH----GHVPK 370
Query: 375 CISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGG 429
++ I + L NL + + ++V+ G P P L AE A + D
Sbjct: 371 IETFGITYSLLLNLTSVCNPSDKSVLWGFISKYAPKATPNTTTYLDRLAEFAIRYYDD-- 428
Query: 430 APEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP 489
++A S SE ++ I D L +E + + ++YD + G E
Sbjct: 429 -------FIKAHKSYYTPSEKHKVILRDILDMLSSISEETEGEVIQKSIYDIGMKAGYEN 481
Query: 490 -KQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFK 526
+ F +YQ L+ +++GPRL F+K G + ++K+ +
Sbjct: 482 LRDYFKDLYQILLGQNEGPRLGTFIKLYGIKEMKKLIE 519
>gi|126737408|ref|ZP_01753143.1| lysyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
gi|126721993|gb|EBA18696.1| lysyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
Length = 547
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 137/523 (26%), Positives = 219/523 (41%), Gaps = 65/523 (12%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ A + I DD D RKVP N+P + L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIKTAFEVISDIPTKLICFSDDLDGMRKVPGNVPNADSL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+++L+ P+T VPD F E++ H+ + L G E+ E YQ G + E +K+
Sbjct: 100 QEHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYEFYSAQEFYQSGQFDEVLKR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWDG- 198
A++ +++ I L + R+E + + P V + T + DG
Sbjct: 160 AVEKYDDVMAIMLKSLREERRQTYSIFLPIHPETGRVLYVPMKKVCAETYTVTFDDEDGK 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGI 266
Query: 259 SLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTR 318
R+ AP F Y+ L K++ + G +S+ E L E Y F +
Sbjct: 267 C----RVLGHRAPEHFTYELF-LDANGQKISKTSGNGISIDEWLTYASTESLAY-FMYQK 320
Query: 319 PNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY--ELSQIDGMPECI 376
P T + FD+ + K ++Y + R A+ + K + + I+ ++ Q D +
Sbjct: 321 PKTAKRMHFDV-IPKAVDEYHQQLR-AYHGQDLKA-QLNNPVWHIHGGDVPQSDMV---- 373
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP 431
+PF L NL +S + +A + G PD P + A A + D P
Sbjct: 374 ---VPFSMLLNLASASSAEDKATMWGFINKYAPDATPETHPGMDQAAGFAVAYFNDFVKP 430
Query: 432 EEFKFALRADGSKAEL---------SEPETKAIKTIRDSL-----LPKMDEMDEKTFSTA 477
+ F L D +A L SE AI D + LP+ + DE+ +
Sbjct: 431 AK-TFRLPTDQERAALQDLADALKSSEAALAAIAKKNDIVGNDDPLPEANFADEEFLQSV 489
Query: 478 LYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
++ K G EP + F A+Y+ L+ QGPR GF+ G E
Sbjct: 490 VFAIGKIHGFEPLRAWFSAIYEVLLGASQGPRFGGFIALYGVE 532
>gi|118430912|ref|NP_147012.2| lysyl-tRNA synthetase [Aeropyrum pernix K1]
gi|150421679|sp|Q9YFT9|SYK_AERPE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|116062237|dbj|BAA79072.2| lysyl-tRNA synthetase [Aeropyrum pernix K1]
Length = 545
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 139/544 (25%), Positives = 235/544 (43%), Gaps = 40/544 (7%)
Query: 8 LHWADQTA---EKIIRERGDLDVYTCASGITPSGTVHVGNFR-EIISVDLVVRALRSRG- 62
+HW D+ E ++ RG D Y G++ SG H+G R E++ + V R L RG
Sbjct: 3 VHWVDKLVAELEAKLQNRGK-DEYIFNGGLSVSGLQHIGRLRGEVLLGEAVRRELEKRGF 61
Query: 63 --KNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
K + +Y+ D + + P P+ E+Y+ +P+ VPD ++ H D
Sbjct: 62 RVKQLLTLYTVDPWKGKDEQRREFPDPKAAERYVGWPLDRVPDPKGCHASWVDHFWSDFG 121
Query: 121 AVLPRVGIHP----EYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEY 176
P +G+ E + E Y+ + L R+E++ ++N YR K +E
Sbjct: 122 ---PYIGVFTDGKIEVVTTRELYKGRLKEFITTMVLPRRDEIRRVINKYR--GRKPYQEG 176
Query: 177 W-PVSVFCTACNK-DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRW 234
W P+ C C + D+T+ G ++Y C +C + KL WR++W W
Sbjct: 177 WIPLEPRCARCGRIDSTEALEILGGERVRY--RCSYCGYQGESSIEDSKLNWRIEWAGVW 234
Query: 235 AFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLK--GVPGKMASSK 292
FEP GKDH + GGS D+A+ ++ R+ + P Y+++ L+ G M+SS
Sbjct: 235 WSLGVDFEPYGKDHATPGGSRDSAAELA-RLLGFEPPEGVWYEWVSLRAGGREADMSSSG 293
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAK 352
++ E L++ P++ R+++ P V+ ++ Y Y + ERI + E+A
Sbjct: 294 FTGITPREWLDIAHPQILRFIYFLHPPTRRVVVDLS-EIPSYYSQYYRAERIYFGIEEAS 352
Query: 353 NDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDVKPAQV- 411
E R YELS P QIP+ H + Q+ G GL +K A +
Sbjct: 353 TVEETRYLARTYELSHPSNPPAKPPSQIPYSHAAIVAQV-VGPERLWTDGLERLKRAGLL 411
Query: 412 --DRLRTR-----AECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLP 464
D R E A+ W AP+ KF + + L E + +L
Sbjct: 412 GHDEYSIRWAKELLEKAYKW-ARRYAPKHLKFEIPDSPPEDALRRIEKPDLLEKLAEVLE 470
Query: 465 KMDEMDEKTFSTALYDAAK-ECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK----E 519
++E E+ AL + + E ++ + Y A+V + +GPR A + + + +
Sbjct: 471 SVEEWSEERIKQALVEFGEGMSSSERRRFYRDFYLAIVGRPEGPRAAPLLSLMDRGFVVD 530
Query: 520 RLEK 523
RL K
Sbjct: 531 RLRK 534
>gi|83953439|ref|ZP_00962161.1| lysyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
gi|83842407|gb|EAP81575.1| lysyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
Length = 526
Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 132/505 (26%), Positives = 223/505 (44%), Gaps = 36/505 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA R + DD D RKVP N+P P L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFEQISDIPTRLVCFSDDLDGMRKVPGNVPDPAAL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
E++L+ P+T VPD F + +++ H+ + L G E++ E Y G + E + +
Sbjct: 100 EEHLQRPLTSVPDPFGKYDSFGAHNNAMLRRFLDTFGFEYEFISATEFYGSGKFDEVLLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTK-IESWDGDWTLKYSCEC 208
A + +E+ ++ L + R+E + + P+ K + + +G T+ + E
Sbjct: 160 AAEKYDEIMEVMLKSLREERRQTYSIFLPIHPETGRVMYVPMKAVNAKEG--TITFDDED 217
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
G L L +VKL W+ D+ RWA FE GKDH + +D RI
Sbjct: 218 GTEMTLPL-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDKIC----RILGN 272
Query: 269 PAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
P F Y+ F+ G K++ S G +++ E L E Y F +P T + F
Sbjct: 273 RPPEHFTYELFLDQDG--HKISKSSGNGLTIDEWLTYASAESLSY-FMYLKPKTAKRMYF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
D+ + K ++Y + R A++ + D+ + ++ + D +P+ +PF L N
Sbjct: 330 DV-IPKAVDEYHQQLR-AYETQ----DDKGKLNNPVWHIHGGD-VPKS-DMVVPFSMLLN 381
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG 442
L ++S + ++ + G PD P + AE A + D P + RA
Sbjct: 382 LASVSSAEDKSQLWGFIQRYAPDATPEGNPGMDAAAEHAVRYYNDFVKPAK---VFRAP- 437
Query: 443 SKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVS 502
SE E +A++ +RD L +D + T ++ KE + F A+Y+ L+
Sbjct: 438 -----SELEREALEDLRDQLKTWDGGLDAEALQTMVFAVGKERFDPLRDWFTALYEVLLG 492
Query: 503 KDQGPRLAGFMKTIGKERLEKIFKD 527
QGPR GF+ G + + D
Sbjct: 493 ASQGPRFGGFIALYGVDETVALIDD 517
>gi|124026958|ref|YP_001012278.1| Lysyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
gi|123977652|gb|ABM79933.1| Lysyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
Length = 565
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 149/543 (27%), Positives = 242/543 (44%), Gaps = 40/543 (7%)
Query: 6 KLLHWADQTA---EKIIRERGDLDVYTCASGITPSGTVHVGNFR-EIISVDLVVRALRSR 61
+L HW D A E+ +R RG +VY G++ SG HVG R E+I ++ + R L R
Sbjct: 25 ELKHWIDALADWLEERLRARGK-EVYVFNGGLSVSGLQHVGRLRGEVIILETLRRILSQR 83
Query: 62 GKNVR---FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHD 118
G ++ +Y+ D + P PE +Y +P+ VPD ++ D
Sbjct: 84 GLRIKQYLTLYTQDAWKGKDSQLKAFPNPEEARRYTGWPLIRVPDPKGELRSWVDRFWLD 143
Query: 119 VEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYW- 177
+P + +G E +K +++ REE++ ++N YR K E W
Sbjct: 144 FGPYIPEFTDGQVEVVTTTELYRGKLLEFVKMSVERREEVRRVINRYR--GRKPYPEGWI 201
Query: 178 PVSVFCTACNK-DTTKIESWDGDWTL-KYSC-ECGHCEALDLRKAKSVKLGWRVDWPMRW 234
P C C + D+T+ D + + +Y C +CGH L K L WR++W W
Sbjct: 202 PFEAICARCGRIDSTEALEVDLEREMVRYRCKQCGHEGWAKLWDGK---LNWRIEWVGVW 258
Query: 235 AFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGK--MASSK 292
FEP GKDH + GGS D+A+ ++ +Y P Y+++ +K G+ M+SS
Sbjct: 259 WALGVDFEPYGKDHATPGGSRDSANELARLVYGIEPPEGLPYEWVAVKTPDGEADMSSSD 318
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAK 352
+ E LEV PEV R+L T P + + +V + YE Y K ER+ + E A
Sbjct: 319 FIGFTPREWLEVAHPEVLRFLMLKTPPMRKISLGLH-EVPQYYEQYYKAERVYYGVETAG 377
Query: 353 NDETFEKEYRIYELSQID-GMPECISYQIPFRHLCNLLQI---NSGDIEAVIK-----GL 403
+ E R YELS G PE + Q P+ H+ L QI N EAV + +
Sbjct: 378 SREEDIVLRRSYELSYTRAGPPEKMPAQPPYTHVAILAQILPENLWRSEAVKRLQRSGHM 437
Query: 404 PDVKPA-QVDRLRTRAECAWNWITDGGAPEEFKFAL---RADGSKAELSEPETKAIKTIR 459
PD + ++RL A W + AP + + D ++ + + KA++ +
Sbjct: 438 PDNPTSFDIERLMALLPRAKRW-AERYAPSHIRVKILEELPDDVRSRVPDWARKALRELG 496
Query: 460 DSLLPKMDEMDEKTFSTALYDAAKECGLEP---KQMFVAVYQALVSKDQGPRLAGFMKTI 516
+ L ++E E + + + G EP ++ + Y V ++ GPR A + +
Sbjct: 497 EK-LAVLEEWSEDAIKNVMIEFTR--GWEPAKRREFYRYFYLVFVGRESGPRAAPLLALL 553
Query: 517 GKE 519
+E
Sbjct: 554 DRE 556
>gi|110678572|ref|YP_681579.1| lysyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
gi|109454688|gb|ABG30893.1| lysyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
Length = 527
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 128/495 (25%), Positives = 213/495 (43%), Gaps = 36/495 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ +V+RA + R I DD D RKVP N+P P+ L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTSMVMRAFQEISDIPTRLICFSDDLDGMRKVPGNVPNPDAL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L+ P+T VPD F ++ H+ + L G E++ E Y G + E + +
Sbjct: 100 TEHLQRPLTSVPDPFGTHASFGAHNNAMLRRFLDTFGFEYEFISATEFYNTGQFDEILLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTK-IESWDGDWTLKYSCEC 208
A +E+ + L + R+E + + P+ K + + G T+ + E
Sbjct: 160 AAAKYDEIMAVMLKSLREERRQTYSIFLPIHPESGRVMYVPMKEVNAQAG--TITFDSED 217
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
G L + +VKL W+ D+ RWA FE GKDH + +D RI
Sbjct: 218 GEEMTLPV-TGGAVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDKIC----RILGQ 272
Query: 269 PAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
P F Y+ F+ G K++ S G VS+ E L E Y F +P T + F
Sbjct: 273 RPPEHFTYELFLDENG--QKISKSSGNGVSIDEWLTYASTESLSY-FMYQKPKTAKRMYF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
D+ + K ++Y + R A D ++ + D +P + +PF L N
Sbjct: 330 DV-IPKAVDEYHQQLR-----AYAGQDTAQRLNNPVWHIHGGD-VPAS-NMLVPFSMLLN 381
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG 442
L ++S + ++ + G P+ P + A+ A + D P++ A
Sbjct: 382 LASVSSAEDKSQLWGFIQRYAPESNPENNPDMDAAADFAVRYFNDFVKPKKVYRA----- 436
Query: 443 SKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVS 502
S+ E +A++ +RD L +D++ + +Y +E + F A+Y+ L+
Sbjct: 437 ----ASDLEREALEDLRDQLKAYDGPVDDEALQSIVYACGRERFDPLRGWFTALYEVLLG 492
Query: 503 KDQGPRLAGFMKTIG 517
QGPR GF+ G
Sbjct: 493 ASQGPRFGGFIALYG 507
>gi|149203133|ref|ZP_01880104.1| lysyl-tRNA synthetase [Roseovarius sp. TM1035]
gi|149143679|gb|EDM31715.1| lysyl-tRNA synthetase [Roseovarius sp. TM1035]
Length = 524
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 130/501 (25%), Positives = 218/501 (43%), Gaps = 48/501 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ ++ RA R I DD D RKVP N+P E+L
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMIRRAFEVISDIPTRLICFSDDLDGMRKVPGNVPDREML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L+ P+T VPD F E++ H+ + L G E+ E Y+ G + + +++
Sbjct: 100 MEHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFDYEFYSATEFYRSGQFDDVLRR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTLK 203
A + + + I L + R+E + + P+ + +T ++ E D T+
Sbjct: 160 AAERYDAIMAIMLKSLREERQQTYSIFLPI-------HPETGRVLYVPMKEVNAKDGTIT 212
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 213 FDDETGREWTLPV-TGGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGIC---- 267
Query: 264 RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEF 323
R PAP F Y+ L K++ S G VS+ E L E Y F +P T
Sbjct: 268 RALGAPAPEHFTYELF-LDESGQKISKSSGNGVSIDEWLTYAATESLSY-FMYQKPKTAK 325
Query: 324 VISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDG--MPECISYQIP 381
+ FD+ + + ++Y + R A ++T E++ + I G +PE +P
Sbjct: 326 RMHFDV-IPRAVDEYHQQLR-------AYPEQTLEQQL-ANPVWHIHGGKVPES-RMVVP 375
Query: 382 FRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKF 436
F L NL +++ + + + G PD +P L A A + D AP +
Sbjct: 376 FSMLLNLASVSAAEDKETLWGFIRRYAPDARPETHPDLDAAAGYAVRYYKDFVAPAK--- 432
Query: 437 ALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAV 496
RA ++ E +A+ +R LL +++ + +Y ++ + F A+
Sbjct: 433 VYRAP------TDLEREALVDLRAQLLAYDGPAEDEALQSIVYAVGRDRFDPLRDWFKAL 486
Query: 497 YQALVSKDQGPRLAGFMKTIG 517
Y+ L+ QGPR GF+ G
Sbjct: 487 YEVLLGASQGPRFGGFIALYG 507
>gi|86139255|ref|ZP_01057825.1| lysyl-tRNA synthetase [Roseobacter sp. MED193]
gi|85824099|gb|EAQ44304.1| lysyl-tRNA synthetase [Roseobacter sp. MED193]
Length = 544
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 133/518 (25%), Positives = 213/518 (41%), Gaps = 59/518 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ A + I DD D RKVP N+P E L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIKNAFEVISDIPTKLICFSDDLDGMRKVPGNVPDAESL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+L+ P+T VPD F E++ H+ + L G ++ E Y+ G + E +K+
Sbjct: 100 TPHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYDFYSAKEFYESGQFDEVLKR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWDG- 198
A+D +++ I L + R+E + + P V + T + DG
Sbjct: 160 AVDKYDDVMAIMLKSLREERRQTYSIFLPIHPETGRVLYVPMKKVCAETYTVTFDDEDGK 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGI 266
Query: 259 SLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTR 318
R+ AP F Y+ L K++ + G +S+ E L E Y F +
Sbjct: 267 C----RVLGQRAPEHFTYELF-LDANGQKISKTSGNGISIDEWLTYASAESLSY-FMYQK 320
Query: 319 PNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISY 378
P T + FD+ + K ++Y + R A D+ + ++ + +PE
Sbjct: 321 PKTAKRMHFDV-IPKAVDEYHQQLR-----AYATQDQKAQLNNPVWHI-HAGQVPES-DM 372
Query: 379 QIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP-- 431
+PF L NL +S + + + G PD P + A A + D P
Sbjct: 373 VVPFSMLLNLASASSAEDKETMWGFINKYAPDATPESNPTMDQAAGFAVAYFNDKVKPTK 432
Query: 432 ------EEFKFALR--ADGSKAELSEPETKAIKTI---RDSLLPKMDEMDEKTFSTALYD 480
++ + AL+ AD K+ + A K +D LP D DE+ + ++
Sbjct: 433 VFRAPSDQERVALQDLADALKSAEAALAAIAKKNETLGKDDPLPVADFADEEFLQSVVFA 492
Query: 481 AAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
K G EP + F A+Y+ L+ QGPR GF+ G
Sbjct: 493 IGKIHGFEPLRDWFTAIYEVLLGASQGPRFGGFIALYG 530
>gi|42520695|ref|NP_966610.1| lysyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99036094|ref|ZP_01315127.1| hypothetical protein Wendoof_01000017 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42410435|gb|AAS14544.1| lysyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 511
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 132/531 (24%), Positives = 229/531 (43%), Gaps = 56/531 (10%)
Query: 7 LLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--SRGKN 64
+ +W Q AEKI++E + +G PSG H+G F E+ ++V AL+ + G
Sbjct: 1 MTNWPFQEAEKILQEFPNKKEIIFETGYGPSGLPHIGTFGEVFRTTVIVNALKKIAPGIK 60
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
+ I DD D RK+P N+P E+L ++L P+TM+PD F ++Y H + L
Sbjct: 61 TKIIAVSDDMDGLRKIPDNVPNQEMLREHLNKPLTMIPDPFGTHQSYGHHMNSLLCKFLD 120
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVFC 183
E+ E Y+ G+Y E + L N +++ D+ L ++R+E + + P+ C
Sbjct: 121 MFEFEYEFRSATECYKSGVYDEKLLLLLKNYDKVMDVMLPSFREERQQTYSPFLPI---C 177
Query: 184 TACNK--DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
++ IE+ T+ Y G + + K K KL W+ DW MRWA +
Sbjct: 178 PKTSQVLQVPVIETNTEKGTITYEDPNGEKIEVPVTKGK-CKLQWKPDWGMRWAAFGVNY 236
Query: 242 EPAGKDHHSQGGSFDTASLVSDR---IYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
E GKD ++++S + I P+ F Y+ F+ +G K++ SKG +S
Sbjct: 237 EAHGKD-------LTPSAVLSSQICEILGEKPPLLFCYELFLDKEG--KKISKSKGNGIS 287
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETF 357
+ E L Y P + L+ P + FD+ I + D+ + + K +
Sbjct: 288 IEEWL-TYAPTESLALYIFQSPKKAKRLYFDV----IPKSTDEYLEFVKRYHENKEKDIN 342
Query: 358 EKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVD 412
+ I++ +P + I F L NL + + + ++ G P+V P
Sbjct: 343 NPAWHIHQ----GNVPSIETSGINFSLLLNLAAACNAENKEILWGFISSYAPNVTPENNK 398
Query: 413 RLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL-----LPKMD 467
L ++ A + D P + S +E E A+ ++D+L +
Sbjct: 399 MLDRLSDFAVKYYHDFIKPTK---------SYKTPNEKEKAALLDLKDTLHSLSTTATAE 449
Query: 468 EMDEKTFSTA-LYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
E+ + FS YD + F +Y+ L+ + GPR+ F+K G
Sbjct: 450 EIQSQVFSIGKKYDYTN-----LRDWFQLLYETLLGQKTGPRMGSFIKLYG 495
>gi|99082101|ref|YP_614255.1| lysyl-tRNA synthetase [Silicibacter sp. TM1040]
gi|99038381|gb|ABF64993.1| lysyl-tRNA synthetase [Silicibacter sp. TM1040]
Length = 547
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 139/533 (26%), Positives = 221/533 (41%), Gaps = 85/533 (15%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ A + I DD D RK+P N+P E L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIKTAFEVISDIPTKLICFSDDLDGMRKIPGNVPNAESL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L+ P+T VPD F E++ H+ + L G E+ E Y G + E +K+
Sbjct: 100 TEHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYEFYSATEFYGSGQFDEVLKR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWDG- 198
A+D +++ I L + R+E + + P V + T + DG
Sbjct: 160 AVDKYDDIMAIMLKSLREERRQTYSIFLPIHPETGRVLYVPMKKVCAETYTITFDDEDGR 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGI 266
Query: 259 SLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGT 317
R+ AP F Y+ F+ G K++ + G VS+ E L E Y F
Sbjct: 267 C----RVLGQRAPEHFTYELFLDENG--QKISKTSGNGVSIDEWLTYASTESLAY-FMYQ 319
Query: 318 RPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIY--ELSQIDGMPEC 375
+P T + FD+ + K ++Y + R A+ + K + + I+ + Q D +
Sbjct: 320 KPKTAKRMHFDV-IPKAVDEYHQQLR-AYHGQDLKA-QLSNPVWHIHGGNVPQSDMV--- 373
Query: 376 ISYQIPFRHLCNLLQINSGDIEAVIKGL-----PD-----------------------VK 407
+PF L N+ +++ + + + G PD VK
Sbjct: 374 ----VPFSMLLNIASVSNAEDKETLWGFINKYAPDATAETHPGMDQAAGHAVRYFNDFVK 429
Query: 408 PAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMD 467
PA+ RL T E A A + ALR+ S+A L+ K D LP+ +
Sbjct: 430 PAKTYRLPTDQERA--------ALTDLADALRS--SEAALAAIAKKNELVGNDDPLPEAN 479
Query: 468 EMDEKTFSTALYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
DE+ + ++ K G EP + F A+Y+ L+ QGPR GF+ G E
Sbjct: 480 FADEEFLQSVVFAIGKIHGFEPLRAWFSAIYEVLLGASQGPRFGGFIALYGVE 532
>gi|58698334|ref|ZP_00373250.1| lysyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535158|gb|EAL59241.1| lysyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 511
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 134/528 (25%), Positives = 227/528 (42%), Gaps = 56/528 (10%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--SRGKNVRF 67
W Q AEKI++E + +G PSG H+G F E+ ++V AL+ + G +
Sbjct: 4 WPFQEAEKILQEFPNKKEIIFETGYGPSGLPHIGTFGEVFRTTVIVNALKKIAPGIKTKI 63
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I DD D RK+P N+P E+L ++L P+TM+PD F ++Y H + L
Sbjct: 64 IAISDDMDGLRKIPDNVPNQEMLREHLNKPLTMIPDPFGTHQSYGHHMNSLLCKFLDMFE 123
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTAC 186
E+ E Y+ G+Y E + L N +++ D+ L ++R+E + + P+ C
Sbjct: 124 FEYEFRSATECYKSGVYDEKLLLLLKNYDKVMDVMLPSFREERQQTYSPFLPI---CPKT 180
Query: 187 NK--DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPA 244
++ IE+ T+ Y G + + K K KL W+ DW MRWA +E
Sbjct: 181 SQVLQVPVIETNTEKGTITYEDPNGGKIEVPVTKGK-CKLQWKPDWGMRWAAFGVNYEAH 239
Query: 245 GKDHHSQGGSFDTASLVSDR---IYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAE 300
GKD ++++S + I P+ F Y+ F+ +G K++ SKG +S+ E
Sbjct: 240 GKD-------LTPSAVLSSQICEILGEKPPLLFCYELFLDKEG--KKISKSKGNGISIEE 290
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKE 360
L Y P + L+ P + FD+ E + +R EK N+
Sbjct: 291 WL-TYAPTESLALYIFQSPKKAKRLYFDVIPKSTDEYLEFVKRYHENKEKDINNPA---- 345
Query: 361 YRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLR 415
+ I++ +P + I F L NL + + + ++ G P+V P L
Sbjct: 346 WHIHQ----GNVPSIETSGINFSLLLNLAAACNAENKEILWGFISSYAPNVTPENNKMLD 401
Query: 416 TRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL-----LPKMDEMD 470
++ A + D P + S +E E A+ ++D+L +E+
Sbjct: 402 RLSDFAVKYYHDFIKPTK---------SYKTPNEKEKAALLDLKDTLHSLSTTATAEEIQ 452
Query: 471 EKTFSTA-LYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+ FS YD + F +Y+ L+ + GPR+ F+K G
Sbjct: 453 SQVFSIGKKYDYTNL-----RDWFQLLYETLLGQKTGPRMGSFIKLYG 495
>gi|89056108|ref|YP_511559.1| lysyl-tRNA synthetase [Jannaschia sp. CCS1]
gi|88865657|gb|ABD56534.1| lysyl-tRNA synthetase [Jannaschia sp. CCS1]
Length = 548
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 129/524 (24%), Positives = 220/524 (41%), Gaps = 51/524 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ +V RA + I DD D RKVP N+P ++
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMVRRAFEVISDIPTKLISFSDDVDGMRKVPGNVPNRGMM 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L+ P+T VPD F E++ H+ + L G +++ E Y G + E +K
Sbjct: 100 AEHLQRPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYDFISATEFYASGQFDEILKL 159
Query: 151 ALDNREE-LKDILNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTLK 203
A++ ++ +K +L + RDE + + P+ + +T ++ D T+
Sbjct: 160 AVERYDDIMKVMLKSLRDERQQTYSIFLPI-------HPETGRVLYVPMKSVNSADHTIT 212
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + VKL W+ D+ RWA FE GKDH + +
Sbjct: 213 FDDEEGREWTLPV-TGGHVKLQWKPDFGARWAALGVDFEMFGKDHSTNAPIYSRIC---- 267
Query: 264 RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEF 323
I AP ++ Y+ L K++ S G +S+ E L E Y F +P T
Sbjct: 268 EILGTKAPETYSYELF-LDEHGQKISKSSGNGISIDEWLTYASTESLSY-FMYAKPKTAK 325
Query: 324 VISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFR 383
+ FD+ + K ++Y + R + AK + I+ +P + +PF
Sbjct: 326 RMHFDV-IPKAVDEYHQQLRAYADQDTAK--RLANPVFHIHG----HNVPAS-TMVVPFA 377
Query: 384 HLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFAL 438
L NL ++ + + + G PD P + L A A + D P +F
Sbjct: 378 MLLNLASVSGAEEKEKLWGFINRYAPDASPEKNPDLDQAAGFAIRYYNDFVKPTR-QFRA 436
Query: 439 RADGSKAELSE------PETKAIKTI--------RDSLLPKMDEMDEKTFSTALYDAAKE 484
D +A + E KA+ I +D LP ++ D++ + ++ K
Sbjct: 437 ATDQERAAMEELVVCLRDAEKALDVIARKNAQEGKDMPLPAVNWQDDEFLQSIVFAIGKT 496
Query: 485 CGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
G +P + F +Y+ L+ QGPR GF+ G + K+ +D
Sbjct: 497 HGFDPLRAWFSGLYEVLLGASQGPRFGGFIALYGIDETVKLIED 540
>gi|146276539|ref|YP_001166698.1| lysyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
gi|145554780|gb|ABP69393.1| lysyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
Length = 526
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 128/499 (25%), Positives = 214/499 (42%), Gaps = 39/499 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA + R I DD D RKVP N+P ++L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFEAISDIPTRLICFSDDMDGMRKVPDNVPNGDML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ L+ P+T VPD F E++ H+ + L G E++ + Y+ G + + +
Sbjct: 100 RENLQRPLTSVPDPFGEYESFGHHNNAMLRRFLDTFGFEYEFISATDFYRSGQFDAVLLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS-VFCTACNKDTTKIESWDGDWTLKYSCEC 208
A + + L +I + + R+E + + P+S ++ + DG T+ + E
Sbjct: 160 ACERYDRLMEIMMASLREERQQTYSIFLPISPTTGRVLYVPLKEVNAKDG--TITFDDED 217
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
G L + +VKL W+ D+ RWA FE GKDH + +D +
Sbjct: 218 GTEMTLPV-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDGIC----EVLGG 272
Query: 269 PAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
P F Y+ F+ KG K++ SKG +++ E L E Y F +P T + F
Sbjct: 273 RKPEHFTYELFLDDKG--EKISKSKGNGLTIDEWLTYASTESLSY-FMFLKPKTAKRMHF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
D+ + K ++Y + R E AK + + ++ + Q G P + F L N
Sbjct: 330 DV-IPKAVDEYHQQLRAYPTQEVAK-----QIDNPVWHIHQ--GHPPESKMVVSFAMLLN 381
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEE-FKFALRAD 441
L + + + G P+ P L A A + D AP+ ++
Sbjct: 382 LASVAQAHDKEGLWGFIRRYAPEASPETHPDLDAAAGFAVRYFHDFVAPKRVYRLP---- 437
Query: 442 GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQAL 500
+E E AI +RD L +D + + ++ +E G EP + F A+Y+ L
Sbjct: 438 ------TEAERAAIADLRDRLEAWEGGLDAEALQSLVFAVGREHGFEPLRDWFKALYEVL 491
Query: 501 VSKDQGPRLAGFMKTIGKE 519
+ +GPR GF+ G E
Sbjct: 492 LGASEGPRFGGFIALYGVE 510
>gi|88608230|ref|YP_506648.1| lysyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
gi|88600399|gb|ABD45867.1| lysyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
Length = 505
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 133/527 (25%), Positives = 223/527 (42%), Gaps = 61/527 (11%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNVR--F 67
W + A+K++ D + +G PSG H+G F E++ +V++AL+ +V+
Sbjct: 7 WPIEEAKKLLPRIKDGKIILFETGYGPSGLPHIGTFGEVVRTIMVMKALQYLSPDVKMKL 66
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I DD D RKVP N+P P+ + KYL Y +T +PD F E+Y H + + L G
Sbjct: 67 ICFSDDMDGLRKVPDNVPNPDEVRKYLGYALTSIPDPFGTHESYGAHMNARLMSFLDLFG 126
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDILN-TYRDESHKITEEYWPVSVFCTAC 186
E+ E Y+ G++ E + AL + +EL +++ T DE + + PV
Sbjct: 127 FEYEFKSSTECYKSGLFNEQLLLALKHNQELLNLIKPTLGDERQQTYSPFLPV------- 179
Query: 187 NKDTTKIES----WDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFE 242
+D +++ D + ECG + + KL W+VDW MRWA FE
Sbjct: 180 -RDGKVLQAEVVELKEDSIVYKDPECGKLFESPV-TGGNCKLQWKVDWGMRWAALGVDFE 237
Query: 243 PAGKDHHSQGGSFDTASLVSDRIYNW----PAPVSFRYDFIGLKGVPGKMASSKGKVVSL 298
GKD ++++S R+ P +S F+ +G K++ SKG +++
Sbjct: 238 FHGKD-------LTPSAVLSARVARILGAEPPELSVYELFLDEEG--KKISKSKGNGLTI 288
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE 358
E L+ Y P + F P + FD+ + + +DY + E+FE
Sbjct: 289 EEWLK-YAPWESLAFFMFQNPKRAKRLYFDV-IPRSVDDY------------LRFSESFE 334
Query: 359 KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDR 413
+ LS ID I+ I + L NL + + +V+ G P P
Sbjct: 335 EGDLTNPLSFIDAKDRNITKGISYSLLLNLASACNPENSSVLWGFIQRYSPAATPENDSL 394
Query: 414 LRTRAECAWNWITDG-GAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEK 472
L + A + D G+ + ++ A ++ E KA+ + L +
Sbjct: 395 LGRLVDHAIAYYRDFVGSNKIYRVA----------TDSEAKALLALSRELSKIPSDATAD 444
Query: 473 TFSTALYDAAKECGLEP--KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+Y KE G K F +YQ L+ +++GPR+ F G
Sbjct: 445 DIQRVVYLVGKEEGYSSDIKGWFQVLYQILLGQNEGPRIGSFFALYG 491
>gi|88607876|ref|YP_505197.1| lysyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
gi|88598939|gb|ABD44409.1| lysyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
Length = 514
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 144/548 (26%), Positives = 228/548 (41%), Gaps = 71/548 (12%)
Query: 6 KLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--SRGK 63
+++ W AEKI++ GD + A+G PSG H+G F E+ V ALR S
Sbjct: 4 EVVSWPFIEAEKILKAFGDSEEIILATGYGPSGLPHIGTFGEVQRTVYVANALREISPKT 63
Query: 64 NVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVL 123
R + DD D RKVP N+P E+LEK+L +T +PD F +Y H A L
Sbjct: 64 KTRILAFSDDMDGLRKVPDNVPNREMLEKHLGQLLTSIPDPFGTSSSYGHHMNGTFCAFL 123
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWP---- 178
R G E++ E Y+ G Y + + + L N ++ I L T +E K + P
Sbjct: 124 DRFGFEYEFISATECYRSGRYDDVLLRLLRNYDKAVSILLPTLGEERQKTYSPFLPICEK 183
Query: 179 ------VSVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPM 232
V++ T K T ++ DGD ++ GHC KL W+ DW M
Sbjct: 184 TSRVLQVTIVKTDVEKGTIFYQNEDGD-LVEVKVTGGHC-----------KLQWKADWGM 231
Query: 233 RWAFEKTVFEPAGKD-HHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMAS 290
RWA +E GKD S S + L+ R PV F Y+ F+ +G K++
Sbjct: 232 RWAAFGVHYESHGKDLTPSAKPSAEICKLLGRR-----PPVLFPYELFLDKEG--KKISK 284
Query: 291 SKGKVVSLAEVLEVYQPE-VARYLFA----GTRPNTEFVISFDLDVIKIYEDYDKTERIA 345
SKG S+ E L E +A Y+F R +E V F D + + Y++
Sbjct: 285 SKGNGFSVEEWLACAPYESLALYMFQNPKRAKRLCSEVVPKFVDDYLSLLHKYNEAP--- 341
Query: 346 WKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQ-INSGDI---EAVIK 401
T + I+ +P+ Y + F L N+ N+ D+ E +IK
Sbjct: 342 ---------STHNPVWHIHN----GNVPKVELYGLTFCLLINIASACNANDVAMLEQLIK 388
Query: 402 GLPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDS 461
D + + L +R + + F + + K +E E+ + + ++
Sbjct: 389 IYRDGIDLENNTLLSR-------LLEFSVAYCRAFVMPSRSYKTPTAE-ESNMLLDLANT 440
Query: 462 LLPKMDEMDEKTFSTALYDAAKECGLEPKQM---FVAVYQALVSKDQGPRLAGFMKTIGK 518
L D +++ K+ L+P + F +Y+ L+ + GPR F+K G
Sbjct: 441 LSCMDDSKSPDEIQNEVFEVGKKY-LQPSDLRMWFKMLYEVLLGQSDGPRFGSFVKLYGI 499
Query: 519 ERLEKIFK 526
E ++ K
Sbjct: 500 ENTVQLIK 507
>gi|114770184|ref|ZP_01447722.1| lysyl-tRNA synthetase [alpha proteobacterium HTCC2255]
gi|114549021|gb|EAU51904.1| lysyl-tRNA synthetase [alpha proteobacterium HTCC2255]
Length = 549
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 130/514 (25%), Positives = 219/514 (42%), Gaps = 50/514 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRS-RGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ A G + + DD D RKVP N+P E++
Sbjct: 40 TGYGPSGLPHIGTFGEVARTAMIQNAFEVISGMPTKLVSFSDDLDGMRKVPGNVPNQEMM 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ +L+ P+T VPD F +++ H+ + L G ++ E Y+ G + + + +
Sbjct: 100 QDFLQKPLTDVPDPFGTHDSFGAHNNAMLCRFLDTFGFEYDFYSSTEYYRSGAFDKVLLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSV----FCTACNKDTTKIESWDGDWTLKYS 205
A++ +E+ ++ L + R+E K + P+S K K+ D T+ +
Sbjct: 160 AVEKYDEIMEVMLASLREERQKSYSIFLPISPKTGRVLYVPMKSVNKV-----DGTITFD 214
Query: 206 CECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRI 265
E G L + +VKL W+ D+ RW+ FE GKDH + +D RI
Sbjct: 215 DEDGTETTLSV-TGGNVKLQWKPDFGARWSALNVDFEMYGKDHSTNTHIYDKIC----RI 269
Query: 266 YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFV 324
PAP F Y+ F+ G K++ SKG VS+ + L E Y F +P T
Sbjct: 270 LGAPAPSHFFYELFLDENG--EKISKSKGNGVSIDQWLTYASSESLSY-FMYQKPGTAKR 326
Query: 325 ISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRH 384
+ FD+ + K ++Y + R A+ + K + Y I++ G IPF
Sbjct: 327 MHFDV-IPKAVDEYHQQLR-AFHTQDVKA-QLNNPVYHIHK-----GNVPVSDMVIPFAM 378
Query: 385 LCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALR 439
L NL ++S + + + G PD P + A A + D P + F
Sbjct: 379 LLNLASVSSAETKDAMWGFINKYAPDASPETNPVMDNAAGFAVRYYHDFVKPSKV-FRSP 437
Query: 440 ADGSKAELSEPETK--AIKTIRDSLLPKMDEM-------------DEKTFSTALYDAAKE 484
+D +A L++ +I+T + + K +M D + ++ K
Sbjct: 438 SDQERAALNDLAAGLVSIETAKSMIDKKNLDMGKDPVDLTNYSLSDGDDLQSLVFAVGKN 497
Query: 485 CGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
E + F A+Y+ L+ QGPR GF+ G
Sbjct: 498 HNFENLRDWFQAIYEVLLGASQGPRFGGFISLYG 531
>gi|84687927|ref|ZP_01015793.1| lysyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
gi|84664064|gb|EAQ10562.1| lysyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
Length = 525
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 134/501 (26%), Positives = 214/501 (42%), Gaps = 48/501 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALR--SRGKNVRFIYSWDDYDVFRKVPANMPKPEV 89
+G PSG H+G F E+ ++ A S F +S DD D RKVP N+P E+
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRHAFEVISDIPTRLFCFS-DDMDGMRKVPENVPNQEM 98
Query: 90 LEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMK 149
L ++L+ P+T+VPD FE E++ H+ + L G E+ E Y+ G + E +
Sbjct: 99 LREHLQQPLTVVPDPFEEFESFGHHNNAMLRRFLDTFGFEYEFYSATEFYKSGAFDETLL 158
Query: 150 KALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTL 202
A N ++L +I L + R+E + + P+ + +T ++ E D T+
Sbjct: 159 AAAKNYDKLMEIMLKSLREERQQTYSIFLPI-------HPETGRVLYVPLKEVNAEDGTI 211
Query: 203 KYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVS 262
+ E G L + +VKL W+ D+ RWA FE GKDH S +D
Sbjct: 212 TFDDEDGREWTLPV-TGGNVKLQWKPDFGARWAALGVDFEMYGKDHSSNTPIYDGIC--- 267
Query: 263 DRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNT 321
R AP F Y+ F+ KG K++ SKG +S+ E L E Y F +P T
Sbjct: 268 -RALGGRAPEHFTYELFLDDKG--EKISKSKGNGLSIDEWLTYASTESLSY-FMYQKPKT 323
Query: 322 EFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIP 381
+ FD+ + + ++Y +++ + + Y I+ +PE +
Sbjct: 324 AKRMFFDV-IPRAMDEYH--QQLQAYPTQTPEQQLANPVYHIHS----GNVPES-KMVVN 375
Query: 382 FRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKF 436
+ L NL + S ++V+ G PD P L A A + D AP + +
Sbjct: 376 YSMLLNLASVASAHDKSVLWGFIRNYAPDATPETHPDLDAAAGYAIRYYEDFVAPTK-SY 434
Query: 437 ALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAV 496
L D E +A+ +RD L D + ++ +E + F A+
Sbjct: 435 RLPTD--------LEREALTDLRDRLAAWEGGNDAEGLQGEVFACGRERFDPMRDWFKAL 486
Query: 497 YQALVSKDQGPRLAGFMKTIG 517
YQ L+ DQGPR F+ G
Sbjct: 487 YQVLLGADQGPRFGSFIALYG 507
>gi|84502893|ref|ZP_01001006.1| lysyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
gi|84388876|gb|EAQ01746.1| lysyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
Length = 528
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 127/500 (25%), Positives = 212/500 (42%), Gaps = 46/500 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA + R I DD D RKVP N+P +L
Sbjct: 44 TGYGPSGLPHIGTFGEVARTTMIRRAFEAISDIPTRLICFSDDMDGMRKVPDNVPNAGML 103
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L+ P+T VPD F E++ H+ + L G E+ E Y+ G + +K+
Sbjct: 104 REHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYEFYSATEYYRSGRFDAVLKR 163
Query: 151 ALDNREE-LKDILNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTLK 203
A++ ++ +K +L + R+E + + P+ + +T ++ E D+T+
Sbjct: 164 AVERYDDVMKVMLKSLREERQQTYSIFLPI-------HPETGRVLYVPLKEVNAQDFTVT 216
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 217 FDDEEGREWTLPV-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDRIC---- 271
Query: 264 RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTE 322
I P F Y+ F+ G K++ SKG +S+ L E Y F +P T
Sbjct: 272 EILGGRKPEHFTYELFLDQNG--EKISKSKGNGLSIDAWLTYASTESLSY-FMFQKPKTA 328
Query: 323 FVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPF 382
+ FD+ + K ++Y + R A D ++ + D +P+ +PF
Sbjct: 329 KRMHFDV-IPKAMDEYHQQLR-----AYAGQDAAQRANNPVWHIHGGD-VPQS-HMVVPF 380
Query: 383 RHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFA 437
L NL + + + G P+ P L A A + D PE+
Sbjct: 381 SMLLNLASVAGAEDRETLWGFIRRYAPEATPETHTDLDAAAGYAVRYYNDFVKPEK---V 437
Query: 438 LRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVY 497
RA +E E +A+ T+R++L D ++D ++ + F A+Y
Sbjct: 438 YRAP------TEQEAEALDTLRNALRAYEGPADGDALQQVVFDVGRDRFDPMRDWFRALY 491
Query: 498 QALVSKDQGPRLAGFMKTIG 517
+ L+ QGPR GF+ G
Sbjct: 492 EVLLGASQGPRFGGFIALYG 511
>gi|85706175|ref|ZP_01037270.1| lysyl-tRNA synthetase [Roseovarius sp. 217]
gi|85669339|gb|EAQ24205.1| lysyl-tRNA synthetase [Roseovarius sp. 217]
Length = 524
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 128/501 (25%), Positives = 215/501 (42%), Gaps = 48/501 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ ++ RA R I DD D RKVP N+P E+L
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMIRRAFEVISDIPTRLICFSDDLDGMRKVPGNVPNREML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L P+T VPD F E++ H+ + L G E+ + Y+ G + E + +
Sbjct: 100 LEHLHKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYEFYSATDFYRSGQFDEVLLR 159
Query: 151 ALDNREE-LKDILNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTLK 203
A + ++ +K +L + R+E + + P+ + +T ++ E D T+
Sbjct: 160 AAERYDDIMKIMLKSLREERQQTYSIFLPI-------HPETGRVLYVPMKEVNAKDGTIT 212
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + VKL W+ D+ RWA FE GKDH + +D
Sbjct: 213 FDDETGREWTLPV-TGGHVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGIC---- 267
Query: 264 RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEF 323
R PAP F Y+ +G K++ S G VS+ + L E Y F +P T
Sbjct: 268 RALGAPAPEHFTYELFLDEG-GQKISKSSGNGVSIDQWLTYAATESLSY-FMFQKPKTAK 325
Query: 324 VISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDG--MPECISYQIP 381
+ FD+ + K ++Y + R A D+T +++ + I G +PE +P
Sbjct: 326 RMHFDV-IPKAVDEYHQQLR-------AYADQTLDQQL-ANPVWHIHGGAVPES-RMVVP 375
Query: 382 FRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKF 436
F L NL +++ + + G PD L A A + D AP +
Sbjct: 376 FSMLLNLASVSAARDKETLWGFIRRYAPDATAQTHPDLDAAAGYAVKYYEDFVAPAK--- 432
Query: 437 ALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAV 496
RA ++ E +A+ +R+ L +++ + +Y ++ + F A+
Sbjct: 433 TYRAP------TDLEREALMDLRNHLAAYDGPAEDEALQSIVYSVGRDRFDPLRDWFKAL 486
Query: 497 YQALVSKDQGPRLAGFMKTIG 517
Y+ L+ QGPR GF+ G
Sbjct: 487 YEVLLGASQGPRFGGFIALYG 507
>gi|83591842|ref|YP_425594.1| Lysine--tRNA ligase [Rhodospirillum rubrum ATCC 11170]
gi|83574756|gb|ABC21307.1| Lysine--tRNA ligase [Rhodospirillum rubrum ATCC 11170]
Length = 550
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 130/503 (25%), Positives = 205/503 (40%), Gaps = 41/503 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKNV--RFIYSWDDYDVFRKVPANMPKPEV 89
+G PSG H+G F E++ +V A R + R DD D RKVP N+P EV
Sbjct: 54 TGYGPSGLPHIGTFGEVVRTTMVRNAFRVIAPEMPARLFTFSDDMDGLRKVPDNIPNKEV 113
Query: 90 LEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMK 149
+ +L P+T +PD F ++ +H+ + A L G E+ + Y G + +
Sbjct: 114 VRPHLGKPLTRIPDPFGTHPSFGQHNNARLRAFLDSFGFEYEFQSATDWYTSGRFDGALL 173
Query: 150 KALDNREELKDILNTYRDESHKITEEYWPVSVFC--TACNKDTTKIESWDGDWTLKYSCE 207
+ L+ + ++D++ E + T Y P C T + + TL Y E
Sbjct: 174 RVLECHDAIRDVVLPTLGEERRAT--YSPFLPICPETGVVLQVPVVSTDVKAGTLVYRRE 231
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RI 265
G E + KL W+ DW RW +E +GKD D+ L S RI
Sbjct: 232 DGK-EIETKVTGGACKLQWKADWGTRWYALGVDYEMSGKD------LIDSVKLSSRICRI 284
Query: 266 YNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVI 325
P S Y+ L G K++ SKG +S+ + L PE + LF +P T +
Sbjct: 285 LGGEPPQSLTYELF-LDGQGQKISKSKGNGLSVEDWLRYANPE-SLALFMYQKPQTAKRL 342
Query: 326 SFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHL 385
FD+ + E E+ + EK + + I+ G P + + L
Sbjct: 343 HFDVIPRAVDEYLTFVEKFPGQDEKT---QLSSPAWHIH-----GGRPPVEKAHLSYSIL 394
Query: 386 CNLLQINSGDIEAVI-----KGLPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRA 440
NL+ + + D AV+ + P P L E A + D F L
Sbjct: 395 LNLVSVCNSDNPAVLWHYISRYAPGATPESAPMLAVLVERAITYYRD--------FVLPQ 446
Query: 441 DGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKEC-GL-EPKQMFVAVYQ 498
+ +E E A+ +R L ++ + TA+Y+ K GL + K F +YQ
Sbjct: 447 KAYRKATAE-EITALVDLRAVLTALPRPVEAEAAQTAVYEVGKRHEGLGDLKAWFQVLYQ 505
Query: 499 ALVSKDQGPRLAGFMKTIGKERL 521
L+ +DQGPR+ F+ G E +
Sbjct: 506 VLLGQDQGPRMGSFIALFGIEEM 528
>gi|126727934|ref|ZP_01743760.1| lysyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
gi|126702794|gb|EBA01901.1| lysyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
Length = 526
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 139/528 (26%), Positives = 221/528 (41%), Gaps = 54/528 (10%)
Query: 5 KKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGK- 63
+KLL A++++EK D +G PSG H+G F E+ +V RA
Sbjct: 20 RKLLKRAEKSSEK-------KDHVLFETGYGPSGLPHLGTFGEVARTTMVRRAFEVISDI 72
Query: 64 NVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVL 123
R I DD D RKVP N+P P L ++L+ P+T VPD F +++ H+ + L
Sbjct: 73 PTRLICFSDDLDGMRKVPENVPDPAALREHLQKPLTSVPDPFGTHDSFGDHNNAMLRRFL 132
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVF 182
G E+ E Y G + E + KA +N + + + L + R+E + P+
Sbjct: 133 DTFGFEYEFYSATEFYGSGQFDEILLKAAENYDAIMAVMLKSLREERRATYSCFLPI--- 189
Query: 183 CTACNKDTTKI-----ESWDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAF 236
+ +T ++ +S D T+ + E G L L +VKL W+ D+ RWA
Sbjct: 190 ----HPETGRVMYVPMKSVDAKAGTITFDDEDGTEMTLPL-TGGNVKLQWKPDFGARWAA 244
Query: 237 EKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKV 295
FE GKDH + +D+ RI AP F Y+ F+ KG GK++ S G
Sbjct: 245 LGVDFEMYGKDHSTNTPIYDSIC----RILGAKAPEHFTYELFLDEKG--GKISKSTGNG 298
Query: 296 VSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDE 355
+++ E L E Y F +P T + FD+ + K ++Y + R + AK
Sbjct: 299 LTIDEWLTYASTESLSY-FMYLKPKTAKRMHFDV-IPKAVDEYHQQLRAYADQDTAKRLA 356
Query: 356 TFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQ 410
+ + D + +PF L NL + S + +A + G P+
Sbjct: 357 NPVFHIHGHNVPTSDMV-------VPFAMLLNLASVASAEDKAQLWGFIQRYAPEASAET 409
Query: 411 VDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMD 470
L A A + D P + RA + E AI + + L +D
Sbjct: 410 HPGLDDAAGFAVRYYNDFVKPTK---NYRAP------DDQERAAIADLCERLKLWEGGLD 460
Query: 471 EKTFSTALYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+ ++ KE +P + F A+Y+ L+ QGPR GF+ G
Sbjct: 461 ADALQSMVFAVGKEHEFDPLRNWFKALYEVLLGASQGPRFGGFIALYG 508
>gi|84702738|ref|ZP_01017313.1| lysyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
gi|84691984|gb|EAQ17824.1| lysyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
Length = 526
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 121/518 (23%), Positives = 221/518 (42%), Gaps = 63/518 (12%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRS-RGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ +V A G+ + + DD D RKVP ++P+PE+L
Sbjct: 42 TGYGPSGLPHIGTFGEVARTSMVRHAFSLLSGRETKLLCVSDDMDGMRKVPPSVPQPEML 101
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
YL+ P++ VPD F ++++ H+ + L R G +++ E Y++G + + +
Sbjct: 102 APYLQQPLSSVPDPFGTHDSFSAHNNARLRRFLDRFGFDYQFVSATEAYREGALDKALLR 161
Query: 151 ALDNREELKD-ILNTYRDESHKITEEYWPVS------VFCTACNKDTTKIE-----SWDG 198
L+ +E+ D IL T +E + P+S ++ ++D E D
Sbjct: 162 MLEVYDEVMDIILPTLGEERRQTYSPILPISPTTNRVLYVPLLDRDPATGEIVFEDENDD 221
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
T K + + KL W+ DW RW +E AG+D +
Sbjct: 222 RVTTKVT-------------GGATKLQWKADWAGRWYAFGVDYEMAGED-------LTES 261
Query: 259 SLVSDRI---YNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLF 314
+ +S +I P F Y F+ +G K++ +KG +++ E L PE + LF
Sbjct: 262 TRLSGKIVRALGAEPPAGFNYQLFLDEEG--RKISKTKGNGLTIEEWLRYASPE-SLSLF 318
Query: 315 AGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPE 374
P + FD+ + E + E+ A + E+ + D + I+ S P
Sbjct: 319 NFQNPKKAKKLYFDIIPKTVDEYWTHVEKFADQPEEKQVD---NPAFHIHTGSVPTTTPP 375
Query: 375 CISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGG 429
+PF L L+ + V++G P A++ L A ++ D
Sbjct: 376 -----VPFSLLLTLVDASGTSDPEVLRGFVAKYRPTATEAEIAALEALIPYAVHYFEDFV 430
Query: 430 APEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP 489
P++ S + E +A+ + + L D +E + TA++DA K G E
Sbjct: 431 KPKK---------SFRSPTVEEREALLDLAERLASLEDGQEEDVYQTAVFDAGKAAGFEN 481
Query: 490 -KQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFK 526
+ F +Y+ ++ + +GPR+ F+ +G +R+ + +
Sbjct: 482 MRAWFTGLYEVVLGQSEGPRMGPFIAVLGPDRVAGLIR 519
>gi|89070770|ref|ZP_01158028.1| lysyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
gi|89043669|gb|EAR49875.1| lysyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
Length = 524
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 131/508 (25%), Positives = 211/508 (41%), Gaps = 61/508 (12%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ ++ RA R I DD D RKVP N+P PE L
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMIRRAFEVISDVPTRLICFSDDLDGMRKVPGNVPDPEAL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ + P+T VPD F +++ H+ + L G E+ E Y+ G + +K+
Sbjct: 100 RAHEQKPLTSVPDPFGTHDSFGDHNNAMLRRFLDTFGFEYEFYSATEFYRSGRFDAVLKR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS--------VFCTACN--KDTTKIESWDG- 198
A++ +++ + L + RDE + + P+ V A N T + DG
Sbjct: 160 AVERYDDIMAVMLKSLRDERAQTYSIFLPIHPETGRVLYVPMKAVNAADHTIAFDDEDGR 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDRI 266
Query: 259 SLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPE-VARYLFAG 316
I P F Y+ F+ KG K++ SKG +S+ E L E ++ Y+F
Sbjct: 267 C----EILGGRKPEHFTYELFLDDKG--QKISKSKGNGLSIDEWLTYASTESLSYYMF-- 318
Query: 317 TRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECI 376
+P T + FD+ + K ++Y + R A D ++ + +P
Sbjct: 319 LKPKTAKRLHFDV-IPKAVDEYHQQLR-----AYADQDAAARLANPVFHIHG-HNVPAS- 370
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ + F L NL + + + + G P+ P L A A + D P
Sbjct: 371 TMVVSFSMLLNLASVAGAEDKETLWGFIRRYAPEASPEANPDLDAAAGFAVRYYQDFVKP 430
Query: 432 -EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP- 489
+EF+ +E E A+ +RD L D + + ++ K G EP
Sbjct: 431 TKEFRAP----------TEQERAALADLRDRLAGWDGGTDAEELQSMVFAVGKAHGFEPL 480
Query: 490 KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+ F A+Y+ L+ QGPR GF+ G
Sbjct: 481 RAWFSALYEVLLGAKQGPRFGGFVALYG 508
>gi|77464155|ref|YP_353659.1| lysyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
gi|77388573|gb|ABA79758.1| Lysyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
Length = 526
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 128/496 (25%), Positives = 209/496 (42%), Gaps = 37/496 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA + R I DD D RKVP N+P +L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFEAISDIPTRLICFSDDMDGMRKVPDNVPNGAML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ L+ P+T VPD F E++ H+ + L G E++ + Y+ G + + +
Sbjct: 100 RENLQRPLTSVPDPFGEFESFGHHNNAMLRRFLDTFGFEYEFISATDFYRSGQFDATLLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS-VFCTACNKDTTKIESWDGDWTLKYSCEC 208
A + + L +I + + R+E + + P+S ++ + DG T+ + E
Sbjct: 160 ACERYDALMEIMMASLREERQQTYSIFLPISPTTGRVLYVPLKEVNAKDG--TITFDDED 217
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
G L + +VKL W+ D+ RWA FE GKDH + +D +
Sbjct: 218 GTDTTLPV-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDGIC----EVLGG 272
Query: 269 PAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
P F Y+ F+ KG K++ SKG +++ E L E Y F +P T + F
Sbjct: 273 RKPEHFTYELFLDDKG--EKISKSKGNGLTIDEWLTYASTESLSY-FMFLKPKTAKRMHF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
D+ + K ++Y + R E AK + + I+ G P + F L N
Sbjct: 330 DV-IPKAVDEYHQQLRAYPGQEPAKQIDN--PVWHIHH-----GAPPESKMVVSFAMLLN 381
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG 442
L + + + G P+ P L A A + D AP+ + L D
Sbjct: 382 LASVAQAQDKDGLWGFIKRYAPEASPETHPDLDAAAGFAVRYFHDFVAPKRV-YRLPTDQ 440
Query: 443 SKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQALV 501
+A AI +R L +D + + ++ KE G EP + F A+Y+ L+
Sbjct: 441 ERA--------AIGDLRARLAAWNGGLDAEALQSMVFAVGKEHGFEPLRDWFKALYEVLL 492
Query: 502 SKDQGPRLAGFMKTIG 517
+GPR GF+ G
Sbjct: 493 GASEGPRFGGFVALYG 508
>gi|126462998|ref|YP_001044112.1| lysyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
gi|126104662|gb|ABN77340.1| lysyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
Length = 526
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 128/496 (25%), Positives = 209/496 (42%), Gaps = 37/496 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA + R I DD D RKVP N+P +L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFEAISDIPTRLICFSDDMDGMRKVPDNVPNGAML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ L+ P+T VPD F E++ H+ + L G E++ + Y+ G + + +
Sbjct: 100 RENLQRPLTSVPDPFGEFESFGHHNNAMLRRFLDTFGFEYEFISATDFYRSGQFDATLLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS-VFCTACNKDTTKIESWDGDWTLKYSCEC 208
A + + L +I + + R+E + + P+S ++ + DG T+ + E
Sbjct: 160 ACERYDALMEIMMASLREERQQTYSIFLPISPTTGRVLYVPLKEVNAKDG--TITFDDED 217
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNW 268
G L + +VKL W+ D+ RWA FE GKDH + +D +
Sbjct: 218 GTETTLPV-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDGIC----EVLGG 272
Query: 269 PAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISF 327
P F Y+ F+ KG K++ SKG +++ E L E Y F +P T + F
Sbjct: 273 RKPEHFTYELFLDDKG--EKISKSKGNGLTIDEWLTYASTESLSY-FMFLKPKTAKRMHF 329
Query: 328 DLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCN 387
D+ + K ++Y + R E AK + + I+ G P + F L N
Sbjct: 330 DV-IPKAVDEYHQQLRAYPGQEPAKQIDN--PVWHIHH-----GAPPESKMVVSFAMLLN 381
Query: 388 LLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG 442
L + + + G P+ P L A A + D AP+ + L D
Sbjct: 382 LASVAQAQDKDGLWGFIKRYAPEASPETHPDLDAAAGFAVRYFHDFVAPKRV-YRLPTDQ 440
Query: 443 SKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQALV 501
+A AI +R L +D + + ++ KE G EP + F A+Y+ L+
Sbjct: 441 ERA--------AIGDLRARLAAWNGGLDAEALQSMVFAVGKEHGFEPLRDWFKALYEVLL 492
Query: 502 SKDQGPRLAGFMKTIG 517
+GPR GF+ G
Sbjct: 493 GASEGPRFGGFVALYG 508
>gi|153011291|ref|YP_001372505.1| lysyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
gi|151563179|gb|ABS16676.1| lysyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
Length = 551
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 141/551 (25%), Positives = 230/551 (41%), Gaps = 66/551 (11%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A+KI++ + G + +G PSG H+G F E+ +V A R ++
Sbjct: 25 WPFEEAKKILKRYAKTGLPETVIFETGYGPSGLPHIGTFGEVARTSMVRHAFRILTEDKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
R I DD D RK+P N+P LE YL+ P++ VP+ F D +++A H+ +
Sbjct: 85 KTRLICFSDDLDGMRKIPDNVPDKAALEPYLQMPLSAVPNPFGGDYKSFADHNNAMLCRF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPVSV 181
L G E+ E YQ G + + KA++ ++ +K +L T +E + P+S
Sbjct: 145 LDTFGFDYEFASATEYYQSGKFDAVLLKAVERYDDIMKVMLPTLGEERQATYSPFLPISP 204
Query: 182 FCTACNKDTTKIESWDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
+ ++S D T+ + E G L + K VKL W+ D+ MRWA
Sbjct: 205 --KSGRVLYVPMKSVDAKAGTITFDDEDGVETTLSVTGGK-VKLQWKPDFGMRWAALGVD 261
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
FE GKDH + G +D I AP F Y+ L + K++ SKG +S+ E
Sbjct: 262 FEMFGKDHQTNAGVYDRIC----EILGGRAPEHFVYELF-LDELGQKISKSKGNGISIDE 316
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDY----DKTERIAWKAEKAKNDET 356
L Y P + L+ +P T + FD+ + K ++Y ER WK N+
Sbjct: 317 WL-AYAPTESLALYNFQKPKTAKRLYFDV-IPKAVDEYFTYLSAYERQEWKDR--LNNPV 372
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG-----LPDVKPAQV 411
+ Y G P ++ + F + NL+ ++ + AV+ G +P V P
Sbjct: 373 WHIHY---------GNPPKVNLPVTFALMLNLVSASNAENPAVLWGFISRHVPGVTPENN 423
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDE 471
L A + D P + +F D +A L + K + LP D
Sbjct: 424 PELDALVGYAIRYFNDFVKPTK-QFRAPDDVERAALEALDAKL------ATLPA--GTDG 474
Query: 472 KTFSTALYDAAKECGLEPKQ----------------MFVAVYQALVSKDQGPRLAGFMKT 515
A+ D A+ +E Q F +Y+ L+ +++GPR F+
Sbjct: 475 NDIQNAILDVAR--AIERYQDHTKKSPEGGPGVSVSFFQMLYEVLIGQERGPRFGSFVAL 532
Query: 516 IGKERLEKIFK 526
G + + K
Sbjct: 533 YGIDETRALIK 543
>gi|83952843|ref|ZP_00961573.1| lysyl-tRNA synthetase [Roseovarius nubinhibens ISM]
gi|83835978|gb|EAP75277.1| lysyl-tRNA synthetase [Roseovarius nubinhibens ISM]
Length = 547
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 131/515 (25%), Positives = 219/515 (42%), Gaps = 53/515 (10%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ ++ RA R I DD D RKVP N+P E L
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMIRRAFEVISDIPTRLICFSDDLDGMRKVPGNVPNQERL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++ ++ P+T V D FE E++ H+ + L G E+ E Y+ G + E +K+
Sbjct: 100 KEDIQRPLTSVYDPFETHESFGHHNNAMLRRFLDTFGFDYEFYSATEFYKSGQFDEVLKR 159
Query: 151 ALDNREE-LKDILNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTLK 203
A++ ++ +K +L + R+E + + P+ + +T ++ E D+T+
Sbjct: 160 AVERYDDVMKVMLKSLREERRQTYSIFLPI-------HPETGRVLYVPMKEVNATDYTIT 212
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 213 FDDEDGREWTLPV-TGGNVKLQWKPDFGARWAALDVDFEMYGKDHSTNTPIYDRIC---- 267
Query: 264 RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTE 322
I P F Y+ F+ KG K++ S G +S+ E L E Y F +P T
Sbjct: 268 EILGGRKPEHFTYELFLDDKG--QKISKSSGNGISIDEWLTYASTESLSY-FMYQKPKTA 324
Query: 323 FVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPF 382
+ FD+ + + ++Y + R A+ + A + + Y I+E G +PF
Sbjct: 325 KRLFFDV-IPRAMDEYHQQLR-AYAGQSA-DQQLANPVYHIHE-----GDVPASDMVVPF 376
Query: 383 RHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFA 437
L NL + + + + G P+ P +L A A + D PE+ F
Sbjct: 377 SMLLNLASVAGAEEKDALWGYIRRYAPEASPEANPQLDQAAGYAVRYYNDFVKPEK-TFR 435
Query: 438 LRADGSKAELSE-------PETKAIKTIR-------DSLLPKMDEMDEKTFSTALYDAAK 483
D +A +++ E + R D LP+ D D + ++ K
Sbjct: 436 APTDQERAAMADLAEAFGAAEVALDQIARKNKMMGNDEPLPEADFADGDFLQSVVFAVGK 495
Query: 484 ECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
G + + F A+Y+ L+ + QGPR F G
Sbjct: 496 NHGFDNLRDWFKALYEVLLGQSQGPRFGSFAALYG 530
>gi|51473563|ref|YP_067320.1| lysyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
gi|81826314|sp|Q68X04|SYK_RICTY Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|51459875|gb|AAU03838.1| lysine--tRNA ligase; Lysine translase.; Lysyl-tRNA synthetase.
[Rickettsia typhi str. Wilmington]
Length = 526
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 127/507 (25%), Positives = 217/507 (42%), Gaps = 37/507 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E V +V +A + I DD D RKVP+N+P PE++
Sbjct: 40 TGYGPSGLPHIGTFAENARVVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPNPEMV 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+Y+ P+T +PD F ++Y + + L + G E+ Y+ G++ + + +
Sbjct: 100 AQYMDMPLTSIPDPFGECKSYGHYMNAKLCTFLDKFGFQYEFYSSTNCYKAGLFDDMLIR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKD-TTKIESWDGD-WTLKYSCE 207
L+ +E+ + L T+R+E + P+ C K IE WD T+ Y E
Sbjct: 160 VLEKYDEIMALMLPTFREERKTTYAPFMPI---CPKTGKVLQVPIEKWDARAGTVSYKDE 216
Query: 208 CGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYN 267
G+ + + KL W+ D+ MRWA +E GKDH + + +I
Sbjct: 217 DGNDVEVPV-TGGHCKLQWKPDFGMRWAALNVDYEMYGKDHLANSRLYSKIC----QILG 271
Query: 268 WPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVIS 326
PV F Y+ F+ G K++ S+G +S+ + L+ Y + LF P +
Sbjct: 272 GKPPVQFCYELFLDENG--EKISKSRGNSISVDDWLK-YASVESIALFMYKNPARAKRLF 328
Query: 327 FDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLC 386
F DVI D T + E+ Y I+ +P+ ++ + + L
Sbjct: 329 F--DVIPKNVDEYITLNQKYHLEEDMVTRFANPVYHIHH----GNVPKIETFGLTYSLLL 382
Query: 387 NLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRAD 441
NL + + ++V+ G P P L AE A + D ++
Sbjct: 383 NLTAVCNPSDKSVLWGFITKYEPKATPNTSTYLDHLAEFAIRYYHD---------FVQIH 433
Query: 442 GSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMFVAVYQAL 500
S +SE + I D L D+ +E+ A+YD + G + + F +YQ L
Sbjct: 434 KSYLVVSEKHKIILYDILDMLSNITDQTEEENIQKAMYDIGMKAGYKNLRYYFKDLYQIL 493
Query: 501 VSKDQGPRLAGFMKTIGKERLEKIFKD 527
+ +++GPR F+K G E +K+ ++
Sbjct: 494 LGQNEGPRFGTFIKLYGVEATKKLVEE 520
>gi|83859645|ref|ZP_00953165.1| lysyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
gi|83852004|gb|EAP89858.1| lysyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
Length = 531
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 133/524 (25%), Positives = 219/524 (41%), Gaps = 57/524 (10%)
Query: 16 EKIIRERG-DLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSW 71
EK +++ G D +G PSG H+G F E+ +V A R ++ + I
Sbjct: 23 EKRVKKSGLKGDAVIFETGYGPSGLPHIGTFGEVARTAMVRHAFRVLTEDQYPTKLIAFS 82
Query: 72 DDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPE 131
DD D RKVP+N+P ++L ++L P+T VPD F + +A+H+ + A L G E
Sbjct: 83 DDMDGMRKVPSNLPNQDMLVEHLGKPLTDVPDPFGTHDGFAQHNNARLRAFLDSFGFEYE 142
Query: 132 YLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVS---------- 180
+ + Y+ G + E + +AL+ +++ + L T E + P+S
Sbjct: 143 FRSATQEYRSGAFDETLIRALEKFDDIMAVMLPTLGAERQATYSPFLPISPTTGRVLYVP 202
Query: 181 VFCTACNKDTTKIESWDG-DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKT 239
+ T E DG D TL + + KL W+ D+ MRWA
Sbjct: 203 MKAIDAKAGTITFEDEDGTDITLPVT-------------GGNTKLQWKPDFGMRWAALGV 249
Query: 240 VFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLA 299
FE GKDH + + RI PV + Y+ L K++ SKG +S+
Sbjct: 250 DFEMFGKDHQANAPIYSRIC----RILGVEPPVQYVYELF-LDDQGEKISKSKGNGLSVE 304
Query: 300 EVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEK 359
E L Y P+ + ++ +P T + FD+ + K ++Y + R ++A++ +
Sbjct: 305 EWLS-YAPQESLSMYMFQKPRTAKRLYFDV-IPKAVDEYRQHLRAY--PDQAEDKQLENP 360
Query: 360 EYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRL 414
Y I+ DG P I + L NL+ + +A + G PDV P L
Sbjct: 361 VYHIH-----DGEPPKAGADISYSLLLNLVSAANAPDKATLWGFIAKYAPDVTPESDPFL 415
Query: 415 RTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTF 474
A A + + P + + D +A + + + R +L P E D +
Sbjct: 416 DRLAGYALAYYEEQVKPHK-TYRAPTDMERAAMQD----LLARFR-ALDPA--ETDAELI 467
Query: 475 STALYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
T +Y A K E + F +Y+ L+ + QGPR G G
Sbjct: 468 QTEVYAAGKSQPFENLRDWFQGLYEVLLGQSQGPRFGGLAALYG 511
>gi|23014539|ref|ZP_00054350.1| COG1384: Lysyl-tRNA synthetase (class I) [Magnetospirillum
magnetotacticum MS-1]
Length = 528
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 132/525 (25%), Positives = 216/525 (41%), Gaps = 45/525 (8%)
Query: 10 WADQTAEKIIRER-----GDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN 64
W Q A ++ ER D +G PSG H+G F E+ +V RA
Sbjct: 15 WPFQEARALLDERLKGKAPDKGYVLFETGYGPSGLPHIGTFGEVARTTMVRRAFSLLAPE 74
Query: 65 V--RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAV 122
+ R DD D RKVP N+P E++ K+L P+T +PD F E++ H+ + +
Sbjct: 75 IPTRLFAFSDDMDGLRKVPDNIPNKEMVAKHLGKPLTRIPDPFGTHESFGHHNNARLCSF 134
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEYWPVSV 181
L G E+ + Y+ G + + L + +E+ + +L T DE + PV
Sbjct: 135 LDTFGFEYEFQSATDWYKSGRFDAALLGVLKHYDEVINVVLPTLGDERRATYSPFLPV-- 192
Query: 182 FC--TACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKT 239
C T +E T+ Y E G + + KL W+ DW MRW
Sbjct: 193 -CPDTGIVLQVPVVERNVEAGTIVYKREDGKLIETPV-TGGACKLQWKADWGMRWVALGV 250
Query: 240 VFEPAGKDH-HSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSL 298
+E +GKD S S A+++ R AP++ Y+ L K++ SKG +++
Sbjct: 251 DYEMSGKDLIPSVQLSTRIATILGGR-----APLNLTYELF-LDDQGQKISKSKGNGLAV 304
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE 358
+ L+ Y P+ + LF +P T + FD+ + + ++Y +A+ + + +
Sbjct: 305 EDWLK-YAPQESLALFMYQKPKTAKRLYFDV-IPRAVDEY-----LAYLGKFPSEEPGKK 357
Query: 359 KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDR 413
+ ++ + G P + F L NL+ + D AVI G P P
Sbjct: 358 LDNPVWHIH--GGKPPAEDAHLSFNILMNLVSVCHSDDPAVIWGFIKRYAPGAAPETAPI 415
Query: 414 LRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKT 473
L G A FK ++ + + + E +A ++D LL +
Sbjct: 416 LNGLV---------GYAIAYFKDFVKPNMKYRKATPDEVEAFTALKDGLLALPADASVDD 466
Query: 474 FSTALYDAAKE-CGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+Y K C E K F A Y+ L+ DQGPR+ F+K G
Sbjct: 467 IQNLVYAIGKRPCFGELKAWFKACYEVLLGNDQGPRMGSFIKLFG 511
>gi|23500524|ref|NP_699964.1| lysyl-tRNA synthetase [Brucella suis 1330]
gi|27805739|sp|P59225|SYK_BRUSU Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|23464156|gb|AAN33969.1| lysyl-tRNA synthetase, putative [Brucella suis 1330]
Length = 551
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 141/555 (25%), Positives = 229/555 (41%), Gaps = 74/555 (13%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A KI++ + G + +G PSG H+G F E+ +V A R ++
Sbjct: 25 WPFEEARKILKRYAKTGLPETVIFETGYGPSGLPHIGTFGEVARTSMVRHAFRILTQDKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
R I DD D RKVP N+P LE YL+ P++ VP+ F D +++A+H+ +
Sbjct: 85 KTRLICFSDDLDGMRKVPDNVPDRAALEPYLQMPLSSVPNPFGGDYKSFAKHNNAMLCRF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPVSV 181
L G E+ E Y+ G + + KA++ ++ +K +L T +E + P+S
Sbjct: 145 LDTFGFDYEFASATEYYRSGRFDTVLLKAVERYDDIMKVMLPTLGEERQATYSPFLPISP 204
Query: 182 FC-TACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
K+++ G T+ + E G L + K VKL W+ D+ MRWA
Sbjct: 205 KSGRVLYVPMKKVDAKAG--TITFDDEDGEETTLSVTGGK-VKLQWKPDFGMRWAALGVD 261
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
FE GKDH + G +D I AP F Y+ L + K++ SKG +S+ E
Sbjct: 262 FEMFGKDHQTNAGIYDRIC----EILGGRAPEHFVYELF-LDQLGQKISKSKGNGISIDE 316
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDY----DKTERIAWKAEKAKNDET 356
L Y P + L+ +P T + FD+ + K ++Y R WK N+
Sbjct: 317 WL-AYAPTESLALYNFQKPKTAKKLYFDV-IPKTVDEYFTYLSAYARQEWKDR--LNNPV 372
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG-----LPDVKPAQV 411
+ Y G P + F + NL+ ++ + AV+ G +P V P
Sbjct: 373 WHIHY---------GNPPKADLPVTFALMLNLVSASNAESPAVLWGFISRHVPGVTPENN 423
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEM-- 469
L A + D P + KF D +A L ++L K+ E+
Sbjct: 424 PELDALVGYAIRYFNDFVKPTK-KFRAPDDVERAAL------------EALDAKLGELPA 470
Query: 470 --DEKTFSTALYDAAKECGLEPKQ----------------MFVAVYQALVSKDQGPRLAG 511
D A+ D A+ +E Q F +Y+ L+ +++GPR
Sbjct: 471 GTDGNVIQNAILDVAR--AIERYQDHTKKSPEGGPGVSVSFFQMLYEVLIGQERGPRFGS 528
Query: 512 FMKTIGKERLEKIFK 526
F+ G + + K
Sbjct: 529 FVALYGIDETRALIK 543
>gi|114798391|ref|YP_761748.1| lysyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
gi|114738565|gb|ABI76690.1| lysyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
Length = 530
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 130/521 (24%), Positives = 221/521 (42%), Gaps = 43/521 (8%)
Query: 21 ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--SRGK-NVRFIYSWDDYDVF 77
ER D +G PSG H+G F E++ +V A + GK R I DD D
Sbjct: 34 ERKADDPVIFETGYGPSGLPHIGTFGEVVRTTMVRHAFEVLTAGKYATRLICVSDDMDGM 93
Query: 78 RKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAE 137
RKVP +P P LE++L+ P+T VPD F +Y H + A L + G E+L +
Sbjct: 94 RKVPETVPDPRSLEQFLQKPLTTVPDPFGTHASYGAHMNARLCAFLDKFGFQYEFLSATD 153
Query: 138 RYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTACNK----DTTKI 193
Y+ G + + +A + + + D++ E + T Y P + + K+
Sbjct: 154 CYRSGRFDAMLLRAAEKYQAIMDVMLPSLGEERRAT--YSPFLPISPSTGRVLYVPMKKV 211
Query: 194 ESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGG 253
++ G+ T ++ E G L + +VK+ W+ D+ MRWA FE GKDH +
Sbjct: 212 DAARGEVT--FTDEDGTDVTLPV-TGGAVKMQWKPDFGMRWAALGVDFEMFGKDHQANAP 268
Query: 254 SFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARY 312
+ RI P + Y+ F+ KG K++ +KG +S+ + L Y P+ +
Sbjct: 269 IYSKIC----RILGARPPEQYVYELFLDEKG--EKISKTKGNGISVEQWL-TYAPDESLA 321
Query: 313 LFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGM 372
LF +P + FD+ + K ++Y + + + + + + E ++ + G
Sbjct: 322 LFQFQKPRVAKKLYFDV-IPKAVDEY-----LTFLEKFPQEEAAAQLENPVWHIHS--GR 373
Query: 373 PECISYQIPFRHLCNLLQI-NSGDIEA----VIKGLPDVKPAQVDRLRTRAECAWNWITD 427
P S + F L NL+ + N D +++ P+ P L A A + D
Sbjct: 374 PPQWSSPVSFALLMNLVAVANPTDTSQLWAYIMRYAPEASPETHPLLDELAGYAMRYYRD 433
Query: 428 GGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGL 487
F L A +A ++ E A+ + DE + T + K+ G
Sbjct: 434 --------FVLPAKTFRAP-TDQERAAMADLSARFKVFSDEPTGENLQTLTFSVGKDHGF 484
Query: 488 EP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
E ++ F A+Y+ L+ ++QGPR F G + D
Sbjct: 485 ENLREWFKALYEVLLGQEQGPRFGSFAALYGVAETATLIDD 525
>gi|149186968|ref|ZP_01865276.1| lysyl-tRNA synthetase [Erythrobacter sp. SD-21]
gi|148829357|gb|EDL47800.1| lysyl-tRNA synthetase [Erythrobacter sp. SD-21]
Length = 542
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 138/547 (25%), Positives = 233/547 (42%), Gaps = 54/547 (9%)
Query: 10 WADQTAEKIIRE-----RGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRAL------ 58
W Q A+++++ + D +G PSG H+G F+E++ LV RA
Sbjct: 16 WPFQEAQRLLKRYPDGAKPDGSPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAFEAMIGA 75
Query: 59 RSRGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFER-DENYARHHEH 117
R R + DD D RKVP N+P +LE L P++ VPD FE+ E++A H+
Sbjct: 76 RPEDGKTRLVAFSDDMDGLRKVPDNVPNQALLEANLHLPLSRVPDPFEKGHESFAAHNNA 135
Query: 118 DVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEY 176
+ A L R G E++ ++ Y G + + +++ L +++ DI L T R+E K
Sbjct: 136 MLRAFLDRFGFQYEFVAASDMYNSGRFDDALRQVLRKNQDILDIMLPTLREERRKTYSPI 195
Query: 177 WPVSVFCTACNKDTTKIESWDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWA 235
P+S T +E D + T++++ E G S KL W+VDW MRW
Sbjct: 196 LPISP--TTGRVLQVPVEVVDAEAGTIRFADEDGTQVEQSALGGMS-KLQWKVDWAMRWY 252
Query: 236 FEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGK 294
+E GKD G + +V ++ P Y+ F+ G K++ SKG
Sbjct: 253 ALGVDYEMYGKDLTDSG--VQSGKIV--KVLGGRKPEGLIYEMFLDQNG--EKISKSKGN 306
Query: 295 VVSLAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAWKAEKAK 352
+S+ E L+ E + Y+F PN + + VI + +DY W+ +
Sbjct: 307 GLSIEEWLQYGSEESLGFYIF----PNPKSAKQLHVRVIPRAVDDY-------WQFRERL 355
Query: 353 NDETFEKEY--RIYELSQIDGMPECI-------SYQIPFRHLCNLLQINSGDIEAVIKGL 403
+ +K+ ++ L++ +G E S + + L NL + EA + L
Sbjct: 356 EGQELDKQLGNPVWHLARANGGFEGTEAPGAGDSLPVTYGLLLNLASVLGA--EASEEAL 413
Query: 404 PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
D + + E + G A + + SK + E +A+K + L
Sbjct: 414 RDYLASYIGSDEITPELE---VLIGTAVAYTRDYIVPTLSKRAPTANEAEALKALDAYLA 470
Query: 464 PKMDEMDEKTFSTALYDAAK--ECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
+ + T +Y+ K + G + F A+YQ L+ DQGPR+ F+ G E
Sbjct: 471 KAPADTSAEDMQTEVYEIGKREQYGFASLRDWFKALYQTLLGSDQGPRMGSFIALYGVEN 530
Query: 521 LEKIFKD 527
K+ +
Sbjct: 531 SRKLIAE 537
>gi|17988845|ref|NP_541478.1| lysyl-tRNA synthetase [Brucella melitensis 16M]
gi|27805741|sp|Q8YCM8|SYK_BRUME Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|17984668|gb|AAL53742.1| LYSYL-TRNA SYNTHETASE [Brucella melitensis 16M]
Length = 551
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 141/555 (25%), Positives = 228/555 (41%), Gaps = 74/555 (13%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A KI++ + G + +G PSG H+G F E+ +V A R ++
Sbjct: 25 WPFEEARKILKRYAKTGLPETVIFETGYGPSGLPHIGTFGEVARTSMVRHAFRILTQDKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
R I DD D RKVP N+P LE YL+ P++ VP+ F D +++A H+ +
Sbjct: 85 KTRLICFSDDLDGMRKVPDNVPDRAALEPYLQMPLSSVPNPFGGDYKSFAEHNNAMLCRF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPVSV 181
L G E+ E Y+ G + + KA++ ++ +K +L T +E + P+S
Sbjct: 145 LDTFGFDYEFASATEYYRSGRFDTVLLKAVERYDDIMKVMLPTLGEERQATYSPFLPISP 204
Query: 182 FC-TACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
K+++ G T+ + E G L + K VKL W+ D+ MRWA
Sbjct: 205 KSGRVLYVPMKKVDAKAG--TITFDDEDGEETTLSVTGGK-VKLQWKPDFGMRWAALGVD 261
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
FE GKDH + G +D I AP F Y+ L + K++ SKG +S+ E
Sbjct: 262 FEMFGKDHQTNAGIYDRIC----EILGGRAPEHFVYELF-LDQLGQKISKSKGNGISIDE 316
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDY----DKTERIAWKAEKAKNDET 356
L Y P + L+ +P T + FD+ + K ++Y R WK N+
Sbjct: 317 WL-AYAPTESLTLYNFQKPKTAKKLYFDV-IPKTVDEYFTYLSAYARQEWKDR--LNNPV 372
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG-----LPDVKPAQV 411
+ Y G P + F + NL+ ++ + AV+ G +P V P
Sbjct: 373 WHIHY---------GNPPKADLPVTFALMLNLVSASNAESPAVLWGFISRHVPGVTPENN 423
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEM-- 469
L A + D P + KF D +A L ++L K+ E+
Sbjct: 424 PELDALVGYAIRYFNDFVKPTK-KFRAPDDVERAAL------------EALDAKLGELPA 470
Query: 470 --DEKTFSTALYDAAKECGLEPKQ----------------MFVAVYQALVSKDQGPRLAG 511
D A+ D A+ +E Q F +Y+ L+ +++GPR
Sbjct: 471 GTDGNVIQNAILDVAR--AIERYQDHTKKSPEGGPGVSVSFFQMLYEVLIGQERGPRFGS 528
Query: 512 FMKTIGKERLEKIFK 526
F+ G + + K
Sbjct: 529 FVALYGIDETRALIK 543
>gi|62317374|ref|YP_223227.1| lysyl-tRNA synthetase [Brucella abortus biovar 1 str. 9-941]
gi|83269350|ref|YP_418641.1| Aminoacyl-tRNA synthetase, class I:Lysyl-tRNA synthetase
(archaeal), class 1c [Brucella melitensis biovar Abortus
2308]
gi|148557914|ref|YP_001257736.1| lysyl-tRNA synthetase [Brucella ovis ATCC 25840]
gi|62197567|gb|AAX75866.1| hypothetical lysyl-tRNA synthetase [Brucella abortus biovar 1 str.
9-941]
gi|82939624|emb|CAJ12613.1| Aminoacyl-tRNA synthetase, class I:Lysyl-tRNA synthetase
(archaeal), class 1c [Brucella melitensis biovar Abortus
2308]
gi|148369199|gb|ABQ62071.1| lysyl-tRNA synthetase [Brucella ovis ATCC 25840]
Length = 551
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 141/555 (25%), Positives = 228/555 (41%), Gaps = 74/555 (13%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A KI++ + G + +G PSG H+G F E+ +V A R ++
Sbjct: 25 WPFEEARKILKRYAKTGLPETVIFETGYGPSGLPHIGTFGEVARTSMVRHAFRILTQDKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
R I DD D RKVP N+P LE YL+ P++ VP+ F D +++A H+ +
Sbjct: 85 KTRLICFSDDLDGMRKVPDNVPDRAALEPYLQMPLSSVPNPFGGDYKSFAEHNNAMLCRF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPVSV 181
L G E+ E Y+ G + + KA++ ++ +K +L T +E + P+S
Sbjct: 145 LDTFGFDYEFASATEYYRSGRFDTVLLKAVERYDDIMKVMLPTLGEERQATYSPFLPISP 204
Query: 182 FC-TACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
K+++ G T+ + E G L + K VKL W+ D+ MRWA
Sbjct: 205 KSGRVLYVPMKKVDAKAG--TITFDDEDGEETTLSVTGGK-VKLQWKPDFGMRWAALGVD 261
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAE 300
FE GKDH + G +D I AP F Y+ L + K++ SKG +S+ E
Sbjct: 262 FEMFGKDHQTNAGIYDRIC----EILGGRAPEHFVYELF-LDQLGQKISKSKGNGISIDE 316
Query: 301 VLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDY----DKTERIAWKAEKAKNDET 356
L Y P + L+ +P T + FD+ + K ++Y R WK N+
Sbjct: 317 WL-AYAPTESLALYNFQKPKTAKKLYFDV-IPKTVDEYFTYLSAYARQEWKDR--LNNPV 372
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG-----LPDVKPAQV 411
+ Y G P + F + NL+ ++ + AV+ G +P V P
Sbjct: 373 WHIHY---------GNPPKADLPVTFALMLNLVSASNAESPAVLWGFISRHVPGVTPENN 423
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEM-- 469
L A + D P + KF D +A L ++L K+ E+
Sbjct: 424 PELDALVGYAIRYFNDFVKPTK-KFRAPDDVERAAL------------EALDAKLGELPA 470
Query: 470 --DEKTFSTALYDAAKECGLEPKQ----------------MFVAVYQALVSKDQGPRLAG 511
D A+ D A+ +E Q F +Y+ L+ +++GPR
Sbjct: 471 GTDGNVIQNAILDVAR--AIERYQDHTKKSPEGGPGVSVSFFQMLYEVLIGQERGPRFGS 528
Query: 512 FMKTIGKERLEKIFK 526
F+ G + + K
Sbjct: 529 FVALYGIDETRALIK 543
>gi|56695370|ref|YP_165718.1| lysyl-tRNA synthetase [Silicibacter pomeroyi DSS-3]
gi|56677107|gb|AAV93773.1| lysyl-tRNA synthetase [Silicibacter pomeroyi DSS-3]
Length = 548
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 126/500 (25%), Positives = 215/500 (43%), Gaps = 46/500 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA R I DD D RKVP N+P ++L
Sbjct: 64 TGYGPSGLPHIGTFGEVARTTMIRRAFHEISDIPTRLICFSDDLDGMRKVPGNVPNQDML 123
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++L+ P+T VPD F E++ H+ + L G E+ E Y+ G + E + +
Sbjct: 124 REHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYEFYSATEFYRSGQFDEILLR 183
Query: 151 ALDNREE-LKDILNTYRDESHKITEEYWPVSVFCTACNKDTTKI------ESWDGDWTLK 203
A + ++ +K +L + R+E + + P+ + +T ++ E D T+
Sbjct: 184 AAERYDDIMKIMLKSLREERQQTYSIFLPI-------HPETGRVLYVPMKEVNAKDGTIT 236
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 237 FDDEDGREWTLPV-TGGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGIC---- 291
Query: 264 RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTE 322
R+ PAP F Y+ F+ G K++ S G VS+ E L E Y F +P T
Sbjct: 292 RVLGVPAPEHFTYELFLDENG--QKISKSSGNGVSIDEWLTYASSESLAY-FMYQKPKTA 348
Query: 323 FVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPF 382
+ FD+ + K ++Y + R A+ + D + ++ + D +P + +PF
Sbjct: 349 KRMYFDV-IPKAVDEYHQQLR-AYPTQ----DLAAQLNNPVWHIHGGD-VPAS-TLIVPF 400
Query: 383 RHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFA 437
L NL ++ + + + G P+ L A A + D P
Sbjct: 401 GMLLNLASVSGAEDKEALWGFIRRYAPEASAESHPDLDQAAGFAVRYFNDFVKPTR---V 457
Query: 438 LRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVY 497
RA E E +A++ +R L ++++ + +Y ++ + F A+Y
Sbjct: 458 YRAP------IEVEREALEELRAQLAAYDGPVEDEALQSIVYAVGRDRFDPLRAWFGALY 511
Query: 498 QALVSKDQGPRLAGFMKTIG 517
+ L+ QGPR GF+ G
Sbjct: 512 EVLLGASQGPRFGGFIALYG 531
>gi|114764466|ref|ZP_01443691.1| lysyl-tRNA synthetase [Roseovarius sp. HTCC2601]
gi|114543033|gb|EAU46052.1| lysyl-tRNA synthetase [Roseovarius sp. HTCC2601]
Length = 525
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 131/505 (25%), Positives = 208/505 (41%), Gaps = 55/505 (10%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA R I DD D RKVP N+P E+L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMIRRAFELISDIPTRLICFSDDMDGMRKVPENVPNQELL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
L+ P+T VPD FE E++ H+ + L G E+ E Y+ G + E + +
Sbjct: 100 HANLQRPLTSVPDPFEEYESFGHHNNAMLRRFLDTFGFQYEFYSATEFYKSGQFDEILLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWDG- 198
++ ++L I L + RDE + + P V V + T + DG
Sbjct: 160 CVEKYDDLMAIMLKSLRDERQQTYSIFLPIHPETGRVLYVPVKHVDPKEGTITFDDDDGK 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GKDH + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGI 266
Query: 259 SLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTR 318
R AP F Y+ L K++ SKG +S+ E L E Y F +
Sbjct: 267 C----RTLGVRAPEHFTYELF-LDDQGQKISKSKGNGLSIDEWLTYASTESLSY-FMYQK 320
Query: 319 PNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISY 378
P T + +D+ + K ++Y + R A+ + AK + ++ + D +PE
Sbjct: 321 PKTAKRLWWDV-IPKAVDEYHQQLR-AFPGQDAKA----QLNNPVWHIHGGD-VPES-KM 372
Query: 379 QIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEE 433
+PF L NL + + + G P+ P + A A + D P +
Sbjct: 373 VVPFSMLLNLASAAGAEDKETMWGFIRRYAPEASPQSHPDMDQAAGFAVRYYDDFVKPTK 432
Query: 434 FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQM 492
RA E E A++ + L E+ ++ T ++ K+ E +
Sbjct: 433 ---QFRAP------DEKERAAMEDLAGRLRGYDGEVTDEALQTLVFAVGKDHAFENLRDW 483
Query: 493 FVAVYQALVSKDQGPRLAGFMKTIG 517
F A+Y+ L+ + QGPR GF+ G
Sbjct: 484 FKALYEVLLGQSQGPRFGGFIALYG 508
>gi|126731194|ref|ZP_01747002.1| lysyl-tRNA synthetase [Sagittula stellata E-37]
gi|126708496|gb|EBA07554.1| lysyl-tRNA synthetase [Sagittula stellata E-37]
Length = 526
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 131/506 (25%), Positives = 214/506 (42%), Gaps = 57/506 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ ++ RA + R I DD D RKVP N+P + L
Sbjct: 40 TGYGPSGLPHIGTFGEVARTSMIRRAFQEISDIPTRLICFSDDMDGMRKVPGNVPNQDRL 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ L+ P+T V D FE E++ H+ + L G E++ E Y+ G + E + +
Sbjct: 100 REDLQKPLTSVYDPFETHESFGHHNNAMLRRFLDTFGFEYEFISATEFYKSGQFDETLLR 159
Query: 151 ALDNREEL-KDILNTYRDESHKITEEYWPVS------VFCTACNKDTTKIESWDGDWTLK 203
A + ++L K +L + R+E + + P+ ++ + D K E +
Sbjct: 160 AAERYDDLMKIMLKSLREERQQTYSIFLPIHPETGRVLYVPMKHVDAAKGE-------IT 212
Query: 204 YSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD 263
+ E G L + + VKL W+ D+ RWA FE GKDH + +D
Sbjct: 213 FDDETGREWTLPVTGGQ-VKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGIC---- 267
Query: 264 RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTE 322
R AP F Y+ F+ G K++ S G +S+ E L E Y F +P T
Sbjct: 268 RALGAKAPEHFTYELFLDENG--QKISKSSGNGISIDEWLTYASTESLSY-FMFQKPKTA 324
Query: 323 FVISFDLDVIKIYEDYDKTERIAWKAEKAK---NDETFEKEYRIYELSQIDG--MPECIS 377
+ FD+ + K ++Y + R A++ + A N+ + I G +PE +
Sbjct: 325 KRMHFDV-IPKAVDEYHQQLR-AYRGQDAAARFNNPVW----------HIHGGEVPES-T 371
Query: 378 YQIPFRHLCNLLQINSGDIEAVI-----KGLPDVKPAQVDRLRTRAECAWNWITDGGAPE 432
+PF L NL + +A + + PD P L A A + D P
Sbjct: 372 LVVPFSMLLNLASAAGAEDKAAMWAFINRYAPDASPETHPDLDAAAGFAVKYYKDFVKPS 431
Query: 433 EFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQ 491
+ RA + E A++ + L D++ + ++ KE G E +
Sbjct: 432 K---VFRAPNPQ------ERAAMEDLAARLRGWDGGADDEALQSLVFAVGKEHGFENLRD 482
Query: 492 MFVAVYQALVSKDQGPRLAGFMKTIG 517
F A+Y+ L+ + QGPR GF+ G
Sbjct: 483 WFKALYEVLLGQSQGPRFGGFIALYG 508
>gi|148284063|ref|YP_001248153.1| lysyl-tRNA synthetase [Orientia tsutsugamushi Boryong]
gi|146739502|emb|CAM79208.1| lysyl-tRNA synthetase [Orientia tsutsugamushi Boryong]
Length = 526
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 127/515 (24%), Positives = 210/515 (40%), Gaps = 52/515 (10%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ +V+ A + + I DD D RKVP N+P ++L
Sbjct: 40 TGYGPSGLPHIGTFSEVARTVMVIEAFKQLSNIPTKLICFSDDMDGLRKVPTNLPNQDML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+K+L P+T +PD F ++Y + + L E+ + Y GM+ + K
Sbjct: 100 KKHLDKPLTSIPDPFNEAKSYGDYMNGKLIQFLNTFNFTYEFYSATKCYNSGMFDNMLLK 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPV--------SVFCTACNKDTTKIESWDGDWT 201
L N E++ +I L T R+E + PV + NKD I D +
Sbjct: 160 VLANYEKIMEIMLPTLREERQATYCPFLPVCPETGKILQISAIKVNKDAGTITFQDHNTG 219
Query: 202 LKYSCEC--GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTAS 259
+ E G C KL W+ D+ MRWA + +E GKDH +
Sbjct: 220 KIFETEVTKGRC-----------KLQWKPDFAMRWAALEVDYEIYGKDHMINQHIYSKIC 268
Query: 260 LVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRP 319
V D I P+ F Y+F L K++ SKG +++ + L Y P + LF P
Sbjct: 269 QVLDGI----PPIQFFYEFF-LDDAGAKISKSKGNSITVEQWL-TYAPMESMLLFIYQSP 322
Query: 320 NTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQ 379
+ F++ + K +DY +A+ + + D+ K + +P +Y
Sbjct: 323 TKAKRLHFNV-IPKNVDDY-----LAFIKKYHQTDDQVAKLANPVYHIHLGNVPNIDTYN 376
Query: 380 IPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEF 434
+ F L NL + + + + V+ G PD L E A + D ++
Sbjct: 377 LNFSLLLNLASVCNPENKYVLWGFINKYAPDACAISCPYLDQLIEFAIRYYNDYVKVQK- 435
Query: 435 KFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP--KQM 492
K + + + I D L + E D +T +A+Y G + +
Sbjct: 436 ---------KYLIPSMQQRTILEQIDLTLTDLYEADAETIQSAIYKIGINNGYDSNLRCY 486
Query: 493 FVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
F +YQ L+ + GPRL F+K G + + + K+
Sbjct: 487 FQELYQILLGQLDGPRLGSFIKLFGIDNTKALIKE 521
>gi|83312710|ref|YP_422974.1| Lysyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
gi|82947551|dbj|BAE52415.1| Lysyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
Length = 528
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 128/525 (24%), Positives = 214/525 (40%), Gaps = 45/525 (8%)
Query: 10 WADQTAEKIIRER-----GDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN 64
W Q A ++ ER D +G PSG H+G F E+ +V RA
Sbjct: 15 WPFQEARALLDERLKGKAPDKGYVLFETGYGPSGLPHIGTFGEVARTTMVRRAFSLLAPE 74
Query: 65 V--RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAV 122
+ R DD D RKVP N+P E++ K+L P+T +PD F E++ H+ + +
Sbjct: 75 IPTRLFAFSDDMDGLRKVPDNIPNKEMVAKHLGKPLTRIPDPFGTHESFGHHNNARLRSF 134
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEYWPVSV 181
L G E+ + Y G + + L + +++ + +L T DE + PV
Sbjct: 135 LDTFGFEYEFQSATDWYTSGRFDAALLGVLRHYDDVINVVLPTLGDERRATYSPFLPV-- 192
Query: 182 FC--TACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKT 239
C T +E T+ Y E G + + KL W+ DW MRW
Sbjct: 193 -CPETGIVLQVPVVERNVDAGTIVYKREDGKLIETPV-TGGACKLQWKADWGMRWVALGV 250
Query: 240 VFEPAGKDH-HSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSL 298
+E +GKD S S A+++ R AP++ Y+ L K++ SKG +++
Sbjct: 251 DYEMSGKDLIPSVQLSTRIAAILGGR-----APMNLTYELF-LDDQGQKISKSKGNGLAV 304
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE 358
+ L+ Y P+ + LF +P T + FD+ + + ++Y +A+ + + +
Sbjct: 305 EDWLK-YAPQESLALFMYQKPKTAKRLYFDV-IPRAVDEY-----LAYLGKFPSEEPGKK 357
Query: 359 KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDR 413
+ ++ + G P + F L NL+ + D AVI G P P
Sbjct: 358 LDNPVWHIH--GGKPPAEDAHLSFNILLNLVSVCHSDDPAVIWGFIKRYAPGAAPETAPI 415
Query: 414 LRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKT 473
L A + D P + + + + E +A ++ L E +
Sbjct: 416 LSGLVGYAIAYYRDFVLPNK---------TYRKATPDEVEAFAALKAGLEALSAEASVED 466
Query: 474 FSTALYDAAKE-CGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+Y+ K C + K F A Y+ L+ DQGPR+ F+K G
Sbjct: 467 IQNLVYEIGKRPCFADLKAWFKACYEVLLGNDQGPRMGSFIKLFG 511
>gi|110632379|ref|YP_672587.1| Lysyl-tRNA synthetase, class 1c [Mesorhizobium sp. BNC1]
gi|110283363|gb|ABG61422.1| Lysyl-tRNA synthetase, class 1c [Mesorhizobium sp. BNC1]
Length = 553
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 132/540 (24%), Positives = 219/540 (40%), Gaps = 61/540 (11%)
Query: 10 WADQTAEKIIRE---RGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A KI++ RG + +G PSG H+G F E+ +V A R ++
Sbjct: 25 WPFEEARKIVKRYEGRGFPETVLFETGYGPSGLPHIGTFGEVARTSMVRHAFRVITEDKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
+ + DD D RKVP N+P E+L +L P+T VPD F ++ + + A
Sbjct: 85 RTKILCFSDDMDGLRKVPDNVPNQEMLRAHLGKPLTRVPDPFSNQYPSFGAANNARLRAF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSV 181
L + G E+ E Y G + + K L+ +E+ + L + R+E + + P+
Sbjct: 145 LDQFGFEYEFASSTEYYASGRFDATLLKVLERFDEVMAVMLPSLREERAQTYSPFLPIHP 204
Query: 182 FCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
+ + D + E G L KL W+ DW MRWA +
Sbjct: 205 KTGVVMQVPIEERKLDAGTIVWRDPESGE-RFETLVTGGHSKLQWKPDWAMRWAALGVDY 263
Query: 242 EPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSL 298
E +GKD D+ L + + + P F Y+ F+ KG K++ SKG +++
Sbjct: 264 EMSGKD------LIDSVKLAAQICTVLDGTPPEGFNYELFLDEKG--QKISKSKGNGLTI 315
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE 358
E L Y P + L+ +P T + FD+ + K +DY ++ + ++ D
Sbjct: 316 DEWL-AYAPTESLSLYMFQKPKTAKKLYFDV-IPKAVDDY-----YSFLSAYSRQDWQNR 368
Query: 359 KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDR 413
++ + DG P I +PF L NL+ ++ + V+ G P V P
Sbjct: 369 LGNPVWHIH--DGNPPPIDLPVPFALLLNLVSASNAHEKGVLWGFISRYAPGVTPQTHPE 426
Query: 414 LRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKT 473
L E A + D P + KF E E +A++ +RD + D +
Sbjct: 427 LDRLTEYAIRYFDDFVKPAK-KF--------REPDAVERQALEALRDKFAALPEGADGEE 477
Query: 474 FSTALYDAAKECGLEPKQ----------------MFVAVYQALVSKDQGPRLAGFMKTIG 517
+ D A+ G+E Q F +YQ L+ +++GPR F G
Sbjct: 478 IQNLVLDVAR--GIERYQDHTKQSPSGGPGVSVAFFQMLYQVLLGQERGPRFGSFAALYG 535
>gi|58617160|ref|YP_196359.1| lysyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
gi|58416772|emb|CAI27885.1| Lysyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
Length = 512
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 97/349 (27%), Positives = 152/349 (43%), Gaps = 35/349 (10%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV--RF 67
W AEKI++ G+ +G PSG H+G F E++ ++ AL+ ++ +
Sbjct: 8 WPFHEAEKILKRFGENQEIIFETGYGPSGLPHIGTFGEVLRTTAIMNALKKICPHIVTKI 67
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
+ DD D RK+P N+P ++L +L P+TM+PD F +Y +H + L
Sbjct: 68 VVISDDMDGLRKIPDNVPNQDMLSHHLEKPLTMIPDPFCTHSSYGKHMNMLLCKFLDLFN 127
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPV------- 179
E+ E Y G+Y E + L N +++ +I L T E K + P+
Sbjct: 128 FQYEFKSATECYHSGIYDEKLLLLLKNYDKVMNIMLPTLGSERQKTYSPFLPICHKTSKV 187
Query: 180 -SVFCTACNKDTTKIESWDGDWTL-KYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFE 237
V T N DT I D D + + G C KL W+ DW MRW+
Sbjct: 188 LQVPITDINTDTGTISYKDNDGKIVETPVTGGKC-----------KLQWKPDWGMRWSAL 236
Query: 238 KTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVS 297
+E GKD S D +S + + + + P PV F Y+ L K++ SKG +S
Sbjct: 237 NIKYEAYGKDLQP---SADISSKICEILGSEP-PVLFCYELF-LDKDGKKISKSKGNGIS 291
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDL------DVIKIYEDYDK 340
+ + L Y P + L+ P + FD+ D + + EDY K
Sbjct: 292 IEDWLS-YAPSESLALYILQNPKKAKKLYFDVIPRSMDDYLDLVEDYHK 339
>gi|56551786|ref|YP_162625.1| lysyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543360|gb|AAV89514.1| lysyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
Length = 531
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 134/515 (26%), Positives = 214/515 (41%), Gaps = 55/515 (10%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN-VRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ +V RA R I DD D RK+P N+P E+L
Sbjct: 49 TGYGPSGLPHIGTFNEVLRTTMVRRAYEILSDTPTRLIAFSDDMDGLRKIPDNVPNHEML 108
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
K+L P++ +PD F + E++A H+ + L R G ++ +E+Y G + E +K
Sbjct: 109 AKHLGKPLSRIPDPFGKYESFAHHNNAMLREFLDRFGFEYDFYSASEQYNSGRFNETLKD 168
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS--------VFCTACNKDTTKIESWDGDWT 201
L N +++ +I L T R+E P+S V + + I D T
Sbjct: 169 ILRNYQKIMNIMLPTLREERRATYSPILPISEKSGIVLQVPVEVVDTEAGIIRFEDEGET 228
Query: 202 LKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLV 261
++ S G KL W+VDW MRW +E AGKD S +S +
Sbjct: 229 VEQSILDG-----------KAKLQWKVDWAMRWKALGVDYEMAGKDLID---SVTQSSKI 274
Query: 262 SDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPN 320
+ R+ P F Y+ F+ G K++ SKG + L E Y PE + FA P
Sbjct: 275 T-RVLGGRPPEGFNYEMFLDENG--EKISKSKGNGIGLEEWFR-YGPEESLAFFAYREPK 330
Query: 321 TEFVISFDLDVI-KIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQ 379
S L VI + ++Y W+ K +D+ +K+ +G
Sbjct: 331 K--AKSLHLGVIPRAIDEY-------WQFRKNWHDQDADKKLGNPVHHIHNGAVPTTEMP 381
Query: 380 IPFR-HLCNLLQINSGDIEAVIKG-----LPDVKPAQVDRLRTRAECAWNWITDGGAPEE 433
+PF L + + G +A++ G LP+ Q L A + D AP
Sbjct: 382 VPFSLLLNLVGVLGDGADKAMVWGYLNQLLPEATVEQYPDLDRLIGFALAYHKDHIAP-- 439
Query: 434 FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKE-CGLEPKQM 492
RA +E E +A+K + L + + T +Y+ K + +
Sbjct: 440 -TLKRRAP------TEQEKEALKDFDNRLSKLAADSSAEALQTEVYEVGKSYYENQLRDW 492
Query: 493 FVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
F +Y+ L+ QGPR+ F+K G + K+ +
Sbjct: 493 FGVLYETLLGSSQGPRMGSFIKLYGLDNTRKLIAE 527
>gi|126734894|ref|ZP_01750640.1| lysyl-tRNA synthetase [Roseobacter sp. CCS2]
gi|126715449|gb|EBA12314.1| lysyl-tRNA synthetase [Roseobacter sp. CCS2]
Length = 522
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 120/508 (23%), Positives = 210/508 (41%), Gaps = 57/508 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ ++ RA + I DD D RKVP N+P+ ++L
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMIRRAFEVISDIPTKLICFSDDLDGMRKVPGNVPQQDML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+++ P+T VPD F E++ H+ + L G E+ E Y+ G + E + +
Sbjct: 100 AEHMHKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYEFYSAREFYKTGQFDEILLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS------VFCTACNKDTTK----IESWDG- 198
A +++ + L + R+E + P+ ++ + D K + DG
Sbjct: 160 AAARYDDIMAVMLKSLREERQGTYSIFLPIHPETGRVLYVPMKHVDGEKGEVTFDDPDGR 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GK+H + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALDVDFEMYGKEHATNTAIYDRI 266
Query: 259 SLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGT 317
I P F Y+ F+ KG K++ S G +S+ E L E Y F
Sbjct: 267 C----EILGGKKPNHFSYELFLDEKG--QKISKSSGNGISIDEWLTYASTESLSY-FMYL 319
Query: 318 RPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECIS 377
+P T + FD+ + K ++Y + R A D+ ++ + +P
Sbjct: 320 KPKTAKRMHFDV-IPKAVDEYHQQLR-----AYADQDDAGRANNPVFHIHG-HNVPAS-D 371
Query: 378 YQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPE 432
+PF L NL ++ + + + G PD + ++ A A + D P
Sbjct: 372 MVVPFAMLLNLASVSGAEDKDTLWGFIQRYAPDASAERNPQMDQAAGFAVRYYNDFVKPT 431
Query: 433 EFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQ 491
+ + ++ E A+ + + L +D + T ++ K+ G +P +
Sbjct: 432 KV---------YRQPTDQERAALGDLVERLKAWDGGLDAEELQTMVFAVGKDHGFDPLRA 482
Query: 492 MFVAVYQALVSKDQGPRLAGFMKTIGKE 519
F A+Y+ L+ QGPR GF+ G E
Sbjct: 483 WFTALYEVLLGASQGPRFGGFIALYGVE 510
>gi|149915411|ref|ZP_01903938.1| lysyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
gi|149810700|gb|EDM70541.1| lysyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
Length = 524
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 128/503 (25%), Positives = 206/503 (40%), Gaps = 52/503 (10%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ +V RA + + DD D RKVP N+P E +
Sbjct: 40 TGYGPSGLPHIGTFGEVARTTMVRRAFEMLSDIPTKLLCFSDDMDGLRKVPGNVPNQEQM 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ L P+T V D F E +A+H+ + A L G ++ E Y G + E +
Sbjct: 100 REDLNLPLTKVRDPFGTHEGFAQHNNARLCAFLDSFGFEYDFASATEYYTSGKFDEMLLV 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS----------VFCTACNKDTTKIESWDGD 199
AL+ +++ +I L T E + + PVS K T E DG+
Sbjct: 160 ALERFDKIMEIMLPTLGAERQQTYSPFLPVSPKTGHVLQVPTLERNVAKGTIVYEEPDGE 219
Query: 200 WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTAS 259
++ GH VK+ W+ DW +RWA +E +GKD S ++
Sbjct: 220 -RVEVPVTGGH-----------VKMQWKPDWALRWAALGVDYEMSGKDLID---SVRQST 264
Query: 260 LVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRP 319
+ + P P S Y+ + K++ SKG +S+ E L PE Y F +P
Sbjct: 265 RICQALGKLP-PESLSYELFN-DELGQKISKSKGNGLSMEEWLRYAAPESLSY-FMYLKP 321
Query: 320 NTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQ 379
T + FD+ + K ++Y + R D T + ++ + D +PE
Sbjct: 322 KTAKRLYFDV-IPKAVDEYHQQLR-----AYPDQDVTQQLNNPVFHVHGGD-VPES-RMV 373
Query: 380 IPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEF 434
+PF L NL + + + + G P+ P L AE A + D PE+
Sbjct: 374 VPFSMLLNLASVAGAEEKDTLWGFIRRYAPEATPETHADLDGAAEFAVRYYNDFVKPEK- 432
Query: 435 KFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFV 494
RA ++ E +A++ +RD L D + ++ +E + F
Sbjct: 433 --TYRAP------TDLEREALEALRDGLKAWDGPADAEELQGLVFACGRERFDPMRDWFK 484
Query: 495 AVYQALVSKDQGPRLAGFMKTIG 517
A+Y+ L+ QGPR GF+ G
Sbjct: 485 ALYEVLLGASQGPRFGGFIALYG 507
>gi|84515938|ref|ZP_01003299.1| lysyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
gi|84510380|gb|EAQ06836.1| lysyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
Length = 524
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 122/506 (24%), Positives = 211/506 (41%), Gaps = 57/506 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ ++ RA R I DD D RKVP N+P+ ++L
Sbjct: 40 TGYGPSGLPHIGTFGEVLRTTMIRRAFAVISDIPTRLICFSDDLDGMRKVPGNVPQQDML 99
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
++++ P+T VPD F E++ ++ + L G E+ E Y+ G + E + +
Sbjct: 100 KEHMHKPLTSVPDPFGAYESFGHYNNAMLRRFLDTFGFEYEFYSAREFYRTGQFDEILLR 159
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS------VFCTACNKDTTK----IESWDG- 198
A + + L + L + R+E + + P+ ++ N D + + DG
Sbjct: 160 AAERYDALMAVMLKSLREERQETYSIFLPIHPETGRVLYVPMKNVDAVRGEVTFDDEDGR 219
Query: 199 DWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTA 258
+WTL + +VKL W+ D+ RWA FE GK+H + +D
Sbjct: 220 EWTLPVT-------------GGNVKLQWKPDFGARWAALDVDFEMYGKEHATNTAIYDRI 266
Query: 259 SLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGT 317
I P F Y+ F+ G K++ S G +S+ E L E Y F
Sbjct: 267 C----EILGGRKPNHFSYELFLDENG--QKISKSSGNGISIDEWLTYAATESLSY-FMYQ 319
Query: 318 RPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECIS 377
+P T + FD+ + K ++Y + R A D+ ++ + D +P
Sbjct: 320 KPKTAKRMHFDV-IPKAVDEYHQQLR-----AYADQDDAGRVNNPVFHIHGGD-VP-VSD 371
Query: 378 YQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPE 432
+PF L NL ++ + + + G PD + ++ A A + D P
Sbjct: 372 MVVPFAMLLNLASVSGAEDKDTLWGFIRRYAPDASAEKNPQMDQAAGFAVRYYNDFVKPA 431
Query: 433 EFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQ 491
+ RA S+ E A++ + L +D + T ++ + G +P +
Sbjct: 432 K---TYRAP------SDQERAALQDLAARLRVWDGGLDAEALQTMVFAVGNDHGFDPLRN 482
Query: 492 MFVAVYQALVSKDQGPRLAGFMKTIG 517
F A+Y+ L+ QGPR GF+ G
Sbjct: 483 WFTALYEVLLGASQGPRFGGFIALYG 508
>gi|87200373|ref|YP_497630.1| lysyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
gi|87136054|gb|ABD26796.1| lysyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
Length = 534
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 96/322 (29%), Positives = 148/322 (45%), Gaps = 29/322 (9%)
Query: 10 WADQTAEKIIRE--------RGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR-- 59
W + A K+I+ G+L +G PSG H+G F+E++ LV RA
Sbjct: 15 WPFEEARKLIKRFPGGKRDASGNLVPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAYEVL 74
Query: 60 SRGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDV 119
+ G R + DD D RKVP N+P +LE +L +P++ +PD FE+ E++A H+ +
Sbjct: 75 TGGHPTRLVAFSDDMDGLRKVPDNVPNKALLEAHLGHPLSRIPDPFEKFESFAHHNNAML 134
Query: 120 EAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWP 178
L R G E++ ++RY G + + +K L N + + DI L T R+E K P
Sbjct: 135 RDFLDRFGFDYEFVSASDRYNSGAFDDALKNVLRNWQAIMDIMLPTLREERRKTYSPVLP 194
Query: 179 VSVFCTACNKDTTKIESWDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFE 237
VS T +E D + +++ G + S KL W+VDW MRW
Sbjct: 195 VSP--TTGEVLQVAVEVVDAEAGIVRFVDSNGETVEHTILGGWS-KLQWKVDWAMRWVAL 251
Query: 238 KTVFEPAGK---DHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKG 293
+E GK D +Q G R+ P Y+ F+ KG K++ SKG
Sbjct: 252 GVDYEMCGKDLTDSVTQSGKI-------ARVLGGQRPEGLIYELFLDEKG--EKISKSKG 302
Query: 294 KVVSLAEVLEVYQPE-VARYLF 314
+++ + LE E + YLF
Sbjct: 303 NGLTIEQWLEYGSEESLGFYLF 324
>gi|88657725|ref|YP_507436.1| lysyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
gi|88599182|gb|ABD44651.1| lysyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
Length = 511
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 99/344 (28%), Positives = 160/344 (46%), Gaps = 25/344 (7%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV--RF 67
W Q AEKI++ G+ +G PSG H+G F E++ ++ ALR N+ +
Sbjct: 8 WPFQEAEKILKRFGENTEIIFETGYGPSGLPHIGTFGEVLRTTAIMNALRKICPNITTKV 67
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I DD D RKVP N+P +++ +L P+TM+PD F E+Y H + L
Sbjct: 68 IVVSDDMDGLRKVPDNIPNKDMIADHLGKPLTMIPDPFCACESYGHHMNMLLCRFLDLFN 127
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTAC 186
E+ E Y+ G+Y E + L N +++ D+ L T E K + P+ C
Sbjct: 128 FEYEFKSATECYKNGLYDEKLLLLLKNYDKVMDVMLPTLGSERQKTYSPFLPI---CPRT 184
Query: 187 NKDTTKIESWDGD---WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEP 243
++ ++ D D T+ Y E G + + K KL W+ DW MRW+ +E
Sbjct: 185 SR-VLQVPIVDIDIALGTISYQDENGEVIQVPVTGGK-CKLQWKPDWGMRWSALNVKYEA 242
Query: 244 AGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVL 302
GKD S + +S + + + + P PV F Y+ F+ +G K++ SKG +S+ + L
Sbjct: 243 YGKDLQP---SAELSSKICEILGSEP-PVLFCYELFLDKEG--RKISKSKGNGISIEDWL 296
Query: 303 EVYQPEVARYLFAGTRPNTEFVISFDL------DVIKIYEDYDK 340
Y P + L+ P + FD+ D + + +DY K
Sbjct: 297 S-YAPSESLALYILQNPKKAKKLYFDVIPRSMDDYLCLVDDYHK 339
>gi|3599397|gb|AAC62702.1| lysyl tRNA synthetase [Cenarchaeum symbiosum]
Length = 524
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 141/547 (25%), Positives = 223/547 (40%), Gaps = 64/547 (11%)
Query: 10 WADQTAEKII-RERG---DLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
W D+ A +++ RE D ++ SG+ SG H+G+ + + V A+ G +
Sbjct: 9 WIDKLAHELVEREEALGRDTEMINVESGLGASGIPHMGSLGDAVRAYGVGLAVGDMGHSF 68
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
R I +DD D RKVP MP LE+++ P++ +PD + ++Y H + L
Sbjct: 69 RLIAYFDDLDGLRKVPEGMPSS--LEEHIARPVSAIPDPYGCHDSYGMHMSGLLLEGLDA 126
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREEL-KDILNTYRDESHKITEEYWPVSVFCT 184
+GI ++ + Y+ G+ AE + + L N + + I E + + Y+ V C
Sbjct: 127 LGIEYDFRRARDTYRDGLLAEQIHRILSNSSVIGEKIAEMVGQEKFRSSLPYFAV---CE 183
Query: 185 ACNKDTT--KIESWDGDWTLKYSC-----------ECGHCEALDLRKAKSVKLGWRVDWP 231
C K T +E ++Y C CGH D A KL W+V++
Sbjct: 184 QCGKMYTAESVEYLADSRKVRYRCGDAEVGGRKIAGCGHEGEADTGGAGG-KLAWKVEFA 242
Query: 232 MRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASS 291
RW FE GKD S VSD I + P P RY+ KG K++ S
Sbjct: 243 ARWQAFDVRFEAYGKDIMD---SVRINDWVSDEILSSPHPHHTRYEMFLDKG-GKKISKS 298
Query: 292 KGKVVSLAEVLEVYQPEVARYLF----AGTRP-NTEFVISFDLDVIKIYEDYDKTERIAW 346
G VV+ + L P+ L G R E V S + + +Y
Sbjct: 299 SGNVVTPQKWLRYGTPQSILLLMYKRITGARELGLEDVPSLMDEYGDLQREYFAGGGRGG 358
Query: 347 KAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQI-NSGDIEAVIK---- 401
KA +AKN F EY +Q P +R L L ++ E V K
Sbjct: 359 KAREAKNRGLF--EYTNLLEAQEGPRPHA-----GYRLLVELSRLFRENRTERVTKKLVE 411
Query: 402 -GLPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADG-SKAELSEPETKAIKTIR 459
G+ D ++RL A N+ D + E + L DG ++ LSE
Sbjct: 412 YGVIDGPSPGIERL---IALAGNYADDMYSAERTEVEL--DGATRGALSE---------- 456
Query: 460 DSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
L + E +Y AK G+ P+ F A+Y+ ++ GPR+ F++ IG+E
Sbjct: 457 --LAEMLGSAPEGGLQDVIYGVAKSHGVPPRDFFKALYRIILDASSGPRIGPFIEDIGRE 514
Query: 520 RLEKIFK 526
++ + +
Sbjct: 515 KVAGMIR 521
>gi|68171747|ref|ZP_00545096.1| Lysine--tRNA ligase [Ehrlichia chaffeensis str. Sapulpa]
gi|67998827|gb|EAM85530.1| Lysine--tRNA ligase [Ehrlichia chaffeensis str. Sapulpa]
Length = 459
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 99/344 (28%), Positives = 160/344 (46%), Gaps = 25/344 (7%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV--RF 67
W Q AEKI++ G+ +G PSG H+G F E++ ++ ALR N+ +
Sbjct: 8 WPFQEAEKILKRFGENTEIIFETGYGPSGLPHIGTFGEVLRTTAIMNALRKICPNITTKV 67
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I DD D RKVP N+P +++ +L P+TM+PD F E+Y H + L
Sbjct: 68 IVVSDDMDGLRKVPDNIPNKDMIADHLGKPLTMIPDPFCACESYGHHMNMLLCRFLDLFN 127
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTAC 186
E+ E Y+ G+Y E + L N +++ D+ L T E K + P+ C
Sbjct: 128 FEYEFKSATECYKNGLYDEKLLLLLKNYDKVMDVMLPTLGSERQKTYSPFLPI---CPRT 184
Query: 187 NKDTTKIESWDGD---WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEP 243
++ ++ D D T+ Y E G + + K KL W+ DW MRW+ +E
Sbjct: 185 SR-VLQVPIVDIDIALGTISYQDENGEVIQVPVTGGK-CKLQWKPDWGMRWSALNVKYEA 242
Query: 244 AGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVL 302
GKD S + +S + + + + P PV F Y+ F+ +G K++ SKG +S+ + L
Sbjct: 243 YGKDLQP---SAELSSKICEILGSEP-PVLFCYELFLDKEG--RKISKSKGNGISIEDWL 296
Query: 303 EVYQPEVARYLFAGTRPNTEFVISFDL------DVIKIYEDYDK 340
Y P + L+ P + FD+ D + + +DY K
Sbjct: 297 S-YAPSESLALYILQNPKKAKKLYFDVIPRSMDDYLCLVDDYHK 339
>gi|57239152|ref|YP_180288.1| lysyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
gi|58579103|ref|YP_197315.1| lysyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
gi|57161231|emb|CAH58147.1| lysyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
gi|58417729|emb|CAI26933.1| Lysyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
Length = 512
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 96/349 (27%), Positives = 151/349 (43%), Gaps = 35/349 (10%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV--RF 67
W AEKI++ G+ +G PSG H+G F E++ ++ AL+ ++ +
Sbjct: 8 WPFHEAEKILKRFGENQEIIFETGYGPSGLPHIGTFGEVLRTTAIMNALKKICPHIVTKI 67
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
+ DD D RK+P N+P ++L +L P+TM+PD F +Y +H + L
Sbjct: 68 VVISDDMDGLRKIPDNVPNQDMLSHHLEKPLTMIPDPFCTHSSYGKHMNMLLCKFLDLFN 127
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPV------- 179
E+ E Y G+Y E + L N +++ +I L T E K + P+
Sbjct: 128 FQYEFKSATECYHSGIYDEKLLLLLKNYDKVMNIMLPTLGSERQKTYSPFLPICHKTSKV 187
Query: 180 -SVFCTACNKDTTKIESWDGDWTL-KYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFE 237
V N DT I D D + + G C KL W+ DW MRW+
Sbjct: 188 LQVPIIDINTDTGTISYKDNDGKIVETPVTGGKC-----------KLQWKPDWGMRWSAL 236
Query: 238 KTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVS 297
+E GKD S D +S + + + + P PV F Y+ L K++ SKG +S
Sbjct: 237 NIKYEAYGKDLQP---SADISSKICEILGSEP-PVLFCYELF-LDKDGKKISKSKGNGIS 291
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDL------DVIKIYEDYDK 340
+ + L Y P + L+ P + FD+ D + + EDY K
Sbjct: 292 IEDWLS-YAPSESLALYILQNPKKAKKLYFDVIPRSMDDYLDLVEDYHK 339
>gi|94495933|ref|ZP_01302512.1| lysyl-tRNA synthetase [Sphingomonas sp. SKA58]
gi|94424625|gb|EAT09647.1| lysyl-tRNA synthetase [Sphingomonas sp. SKA58]
Length = 526
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 132/517 (25%), Positives = 209/517 (40%), Gaps = 58/517 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ +V A + R + DD D RKVP N+P +L
Sbjct: 43 TGYGPSGLPHIGTFNEVLRTTMVRNAYHALSDIPTRLVAFSDDMDGLRKVPDNVPNQAML 102
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+L P+T VPD FE+ E++A H+ + L R G E++ E+Y+ G + + +++
Sbjct: 103 NAHLGKPLTQVPDPFEKFESFAHHNNAMLREFLDRFGFDYEFVSATEQYRAGAFDDALRQ 162
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVS--------VFCTACNKDTTKIESWDGDWT 201
L + + DI L T R E P+S V + + + D T
Sbjct: 163 VLRRYQAIMDIMLPTLRKERQATYSPVLPISPKSGIVLQVPVEVIDAEAGLVRFEDDGET 222
Query: 202 LKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLV 261
++ S G KL W+VDW MRW +E AGKD D+ +
Sbjct: 223 IEQSILSG-----------GAKLQWKVDWAMRWYALGVDYEMAGKD------LIDSVTQS 265
Query: 262 SD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTR 318
S R + P F Y+ F+ KG K++ SKG +SL + L Y P+ + +A
Sbjct: 266 SKICRALDGRPPEGFNYEMFLDEKG--EKISKSKGNGLSLEQWL-TYGPQESLAFYAYRE 322
Query: 319 PNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISY 378
P + + + + ++Y W+ +T E++ DG
Sbjct: 323 PKKAKQLHMGV-IPRAVDEY-------WQFRGNYPRQTIEQQLGNPVHHIHDGKLPQGEL 374
Query: 379 QIPFRHLCNLLQI-NSGDIEAVIKGLPDVKP-AQVDRLRTRAEC---AWNWITDGGAPEE 433
+ F L NL+ + E V L + P A VD E A + D AP
Sbjct: 375 PVTFGLLLNLVGVMGDASREQVWGYLQNYVPGASVDTYPELDELIGHALAYHRDFVAPTL 434
Query: 434 FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGL---EPK 490
+ A A+ E A+K + L + + +Y K+ E +
Sbjct: 435 QRRAPEAN---------EAAALKRLDLELAALPADASAEDIQNIVYAIGKDEAFGFAELR 485
Query: 491 QMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
F A+YQ L+ DQGPR+ F+ G E K+ +
Sbjct: 486 DWFKALYQTLLGADQGPRMGSFIALYGIENSRKLIAE 522
>gi|85708024|ref|ZP_01039090.1| lysyl-tRNA synthetase [Erythrobacter sp. NAP1]
gi|85689558|gb|EAQ29561.1| lysyl-tRNA synthetase [Erythrobacter sp. NAP1]
Length = 565
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 144/540 (26%), Positives = 233/540 (43%), Gaps = 66/540 (12%)
Query: 10 WADQTAEKII-RERG---DLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS-RGKN 64
W Q A+++ R RG D + +G PSG H+G F+E++ LV RA + G+
Sbjct: 45 WPFQEAQRLAKRLRGGKKDGEPVLFETGYGPSGLPHIGTFQEVLRTSLVRRAYEALTGER 104
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTF-ERDENYARHHEHDVEAVL 123
R + DD D RKVP N+P E+L L P++ +P+ F E++A H+ + L
Sbjct: 105 TRLVAFSDDMDGLRKVPENVPNKELLAANLGKPLSRIPNPFGTSHESFAAHNNAKLREFL 164
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVF 182
+ G E++ ++RY G + + ++ L N + + DI L T E + PVS
Sbjct: 165 DQFGFDYEFVSSSDRYNSGAFDDALRGVLRNFDAIMDIMLPTLGAERQQTYSPVMPVSPT 224
Query: 183 CTACNKDTTKIESWDGD-WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
A + IE D + T++++ E G + K W+VDW MRW +
Sbjct: 225 TGAVLQ--VPIEVVDAEAGTIRFTDEDGSMVEQSALGGMA-KCQWKVDWAMRWVALGVDY 281
Query: 242 EPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAE 300
E GKD G S R+ P Y+ F+ KG K++ SKG +++ E
Sbjct: 282 EMYGKDLTDSG----VQSGKIARVLGGNKPEGLIYELFLDAKG--EKISKSKGNGLTIDE 335
Query: 301 VLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDK-TERIA------------W 346
L+ E + Y+FA + + + K +DY + ER+A W
Sbjct: 336 WLQYGSEESLGFYIFANPKSAKQLHAGV---IPKAIDDYWQFRERLAEQPLDKQLGNPVW 392
Query: 347 KAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGLPDV 406
++A +E FE G + +S +P+ L ++ +EA + L +
Sbjct: 393 HLQRA--NERFEG-------PDAPGAGDALS--VPYSL--LLNLVSVLGLEATPENLAEY 439
Query: 407 ------KPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRD 460
KP + L + A N+ D AP K A A G L+E +T+ D
Sbjct: 440 VAAYTGKPVEDPALLGLIDAAVNYNRDFVAPTLKKRA-PAGGEVLALTELDTQLAAAPGD 498
Query: 461 SLLPKMDEMDEKTFSTALYDAAK--ECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+ D + T +Y+ K E G E + F A+Y+ L+ +QGPR+ F+K G
Sbjct: 499 A--------DAEVLQTMVYEIGKREEFGFENLRDWFRALYETLLGSEQGPRMGSFIKLYG 550
>gi|144901004|emb|CAM77868.1| Lysyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
Length = 533
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 128/526 (24%), Positives = 220/526 (41%), Gaps = 47/526 (8%)
Query: 10 WADQTAEKIIRER-----GDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN 64
W Q A+ ++ ER D +G PSG H+G F E++ +V A +
Sbjct: 19 WPFQEAKTLLDERLGGKCPDKGYVLFETGYGPSGLPHIGTFGEVVRTTMVRNAFKILAPE 78
Query: 65 V--RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAV 122
R DD D RKVP N+P +++ +L P+T +PD F ++ H+ + A
Sbjct: 79 TPTRLFAFSDDMDGLRKVPDNIPNKDIVAPHLGKPLTRIPDPFGTHASFGHHNNARLRAF 138
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEYWPVSV 181
L G E+ E Y+ G + + L+ +++ + IL T +E + + PV
Sbjct: 139 LDSFGFEYEFQSATEWYETGKFDAAKLRILECYDQVINVILPTLGEERRQTYSPFLPV-- 196
Query: 182 FC--TACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKT 239
C T +E T+ Y E G + A K+ W+ DW MRW
Sbjct: 197 -CPETGVVLQVPVVERNVAAGTIVYRREDGRLVETPVTGAH-CKMQWKADWAMRWYALGV 254
Query: 240 VFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLA 299
+E +GKD S + + + I P P++ Y+ L K++ SKG +++
Sbjct: 255 DYEMSGKDLIP---SVELSGRICRNIGGTP-PLNLTYELF-LDDQGQKISKSKGNGLAVE 309
Query: 300 EVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEK 359
+ L+ Y P + LF +P + FD+ + + +DY K DET ++
Sbjct: 310 DWLK-YAPPESLALFMYQKPKAAKRLYFDV-IPRSVDDYLTF------LGKFDTDETQKR 361
Query: 360 -EYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDR 413
+ ++ + +G P + F L NL + + + +AV+ G P P
Sbjct: 362 LDSPVWHIH--NGQPPREDSHLTFSILLNLASVCNSEDKAVLWGFIQRYAPGASPETAPI 419
Query: 414 LRTRAECAWNWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEK 472
L + A + D P ++++ A + E +A + +L + +
Sbjct: 420 LDKLVDGAVAYYRDFVKPAKQYRTA----------TIDEAQAFADLEAALRALPADASAE 469
Query: 473 TFSTALYDAAK-ECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+A+YD K +C E K F A Y+ L+ +DQGPR+ F+K G
Sbjct: 470 EIQSAVYDIGKRDCFGELKAWFKACYEVLLGQDQGPRMGSFIKLYG 515
>gi|71082916|ref|YP_265635.1| lysyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062029|gb|AAZ21032.1| lysine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
Length = 525
Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 132/546 (24%), Positives = 227/546 (41%), Gaps = 55/546 (10%)
Query: 3 NEKKLLHWADQTAEKIIRERGDL----DVYTCASGITPSGTVHVGNFREIISVDLVVRAL 58
N K W A+K++RER +G PSG H+G F E+ ++V AL
Sbjct: 11 NLDKTNAWPFVEAKKLLRERKSFIDKKGKIILQTGYGPSGLPHIGTFGEVARTSMMVNAL 70
Query: 59 RSRGKNVRFIYSW-DDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEH 117
+ I ++ DD D FRKVP N+P E+L L P+T VPD FE+ ++ H+
Sbjct: 71 KQLTDIPTEIITFSDDMDGFRKVPENVPNQELLNNNLHKPLTQVPDPFEKFSSFGEHNNE 130
Query: 118 DVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEY 176
++ L + + + Y+ G + ++ L+N + + D IL T E K +
Sbjct: 131 MLKDFLNKFNFEYNFQSSSVLYKSGFFNPTLQIILENYQGIMDIILPTLGKERQKTYSPF 190
Query: 177 WPV--------SVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRV 228
P+ + K+ +KI + L+ S G+C KL W+V
Sbjct: 191 LPICPDTGKVLEIPVLEILKEKSKIIFDNNGKKLEVSIFDGNC-----------KLQWKV 239
Query: 229 DWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVP 285
DW MRW FE GKD ++A L S ++ P F Y+ F+ KG
Sbjct: 240 DWAMRWYALDIDFEMYGKD------LIESAILSSKIIKLIGKTNPSGFAYELFLDEKG-- 291
Query: 286 GKMASSKGKVVSLAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERI 344
K++ SKG +++ + LE PE ++ Y++ + + + Y D+
Sbjct: 292 EKISKSKGNGITIDQWLEYASPESLSLYMYQNPKRAKKLYKEIVPKTVDEYLDF------ 345
Query: 345 AWKAEKAKNDETFEKEYRIYELSQI-DGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL 403
EKAK E + + + + +G+ + F L NL++ ++ D + ++
Sbjct: 346 ---IEKAKTQN--ELQLLMNPVWHVHNGLIPKEDTIMSFSMLLNLVETSNADSKELLWKF 400
Query: 404 PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
VK + + L N I G A + F ++ E A++ + SL
Sbjct: 401 --VKKYKKNLLEKEHPIFDNLI--GYAIKYFNDVIKLQKKYKTPDANEKVALEALVKSLD 456
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEP--KQMFVAVYQALVSKDQGPRLAGFMKTIGKERL 521
D+M + T +Y KE G + F +Y+ + + GPR+ F+ G
Sbjct: 457 SCNDKMLPEDIQTLIYSTGKENGYAENLRDWFKLIYEVVFGDENGPRMGFFISFFGVNET 516
Query: 522 EKIFKD 527
+++ K+
Sbjct: 517 KELIKE 522
>gi|103485956|ref|YP_615517.1| lysyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
gi|98976033|gb|ABF52184.1| lysyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
Length = 533
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 135/521 (25%), Positives = 217/521 (41%), Gaps = 61/521 (11%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSR--GKNVRFIYSWDDYDVFRKVPANMPKPEV 89
+G PSG H+G F E++ +V RA + G R + DD D RKVP N+P +
Sbjct: 46 TGYGPSGLPHIGTFNEVLRTTMVRRAYETLTGGAPTRLVAFSDDMDGLRKVPDNVPNGAM 105
Query: 90 LEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMK 149
L ++L P+T +PD F + E++A H+ + L R G E++ ERY G + E +K
Sbjct: 106 LREHLGRPLTAIPDPFGKYESFAHHNNAMLREFLDRFGFDYEFVSSTERYTSGAFDEALK 165
Query: 150 KALDNREELKDI-LNTYRDESHKITEEYWPVS--------VFCTACNKDTTKIESWDGDW 200
L + +++ DI L T R E PVS V T + + + D
Sbjct: 166 NVLRHNQDILDIMLPTLRAERAATYSPVLPVSPKSGIVLQVPVTVVDAEAGLVSFEDEGE 225
Query: 201 TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQG-GSFDTAS 259
T+ +S G KL W+VDW MRW +E GKD G S A
Sbjct: 226 TITHSILRG-----------GAKLQWKVDWAMRWVALGVDYEMYGKDLTDSGVQSGKIAR 274
Query: 260 LVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTR 318
+ R P Y+ F+ KG K++ SKG +S+ E L Y E + +A
Sbjct: 275 ALGGR-----KPEGLIYEMFLDEKG--EKISKSKGNGLSMEEWL-TYGSEESLAFYAYRE 326
Query: 319 PNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISY 378
P + + V K ++Y + R + A++ D+ +++ +PE +
Sbjct: 327 PKAAKQLHIGV-VPKAVDEYLQM-RGTYPAQEP--DKRLGNPVHHVHVARGQDVPETV-L 381
Query: 379 QIPFRHLCNLLQINSGD---------IEAVIKGLPDVKPAQVDRLRTRAECAWNWITDGG 429
+ + L NL+ + D + + G ++DRL A A+N D
Sbjct: 382 PVTYGLLLNLVGVMGADASKEQIWRYLGQYVAGADAATYPELDRLIDNA-MAYN--RDFV 438
Query: 430 APEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKE--CGL 487
AP + A G A L E + R + LP D+ +Y+ K+ G
Sbjct: 439 AP-TLQRRKPAGGEVAALRELDA------RLAALPADASADD--IQNIVYEIGKDEAHGF 489
Query: 488 EP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
+ + F A+Y+ L+ GPR+ F+ G E ++ +
Sbjct: 490 DNLRDWFRALYETLLGSSAGPRMGSFIALFGVENTRRLIAE 530
>gi|91762661|ref|ZP_01264626.1| lysine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718463|gb|EAS85113.1| lysine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
Length = 520
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 132/546 (24%), Positives = 226/546 (41%), Gaps = 55/546 (10%)
Query: 3 NEKKLLHWADQTAEKIIRERGDL----DVYTCASGITPSGTVHVGNFREIISVDLVVRAL 58
N K W A+K++RER +G PSG H+G F E+ ++V AL
Sbjct: 6 NLDKTNAWPFVEAKKLLRERKSFIDKKGKIILQTGYGPSGLPHIGTFGEVARTSMMVNAL 65
Query: 59 RSRGKNVRFIYSW-DDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEH 117
+ I ++ DD D FRKVP N+P E+L L P+T VPD FE+ ++ H+
Sbjct: 66 KQLTDIPTEIITFSDDMDGFRKVPENVPNQELLNNNLHKPLTQVPDPFEKFSSFGEHNNE 125
Query: 118 DVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEY 176
++ L + + + Y+ G + ++ L+N + + D IL T E K +
Sbjct: 126 MLKDFLNKFNFEYNFQSSSVLYKSGFFNPTLQIILENYQGIMDIILPTLGKERQKTYSPF 185
Query: 177 WPV--------SVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRV 228
P+ + K+ +KI + L+ S G+C KL W+V
Sbjct: 186 LPICPDNGKVLEIPVLEILKEKSKIIFDNNGKKLEVSIFDGNC-----------KLQWKV 234
Query: 229 DWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVP 285
DW MRW FE GKD ++A L S ++ P F Y+ F+ KG
Sbjct: 235 DWAMRWYALDIDFEMYGKD------LIESAILSSKIIKLIGKTNPSGFAYELFLDEKG-- 286
Query: 286 GKMASSKGKVVSLAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERI 344
K++ SKG +++ + LE PE ++ Y++ + + + Y D+
Sbjct: 287 EKISKSKGNGITIDQWLEYASPESLSLYMYQNPKRAKKLYKEIVPKTVDEYLDF------ 340
Query: 345 AWKAEKAKNDETFEKEYRIYELSQI-DGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL 403
EKAK E + + + + +G+ + F L NL++ ++ D + ++
Sbjct: 341 ---IEKAKTQN--ELQLLMNPVWHVHNGLIPKEDTIMSFSMLLNLVETSNADSKELLWKF 395
Query: 404 PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
VK + + L N I G A + F ++ E A++ + SL
Sbjct: 396 --VKKYKKNLLEKEHPIFDNLI--GYAIKYFNDVIKLQKKYKTPDANEKVALEALVKSLD 451
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEP--KQMFVAVYQALVSKDQGPRLAGFMKTIGKERL 521
D+M + T +Y KE G + F +Y+ + + GPR+ F+ G
Sbjct: 452 SCNDKMLPEDIQTLIYSTGKENGYAENLRDWFKLIYEVVFGDENGPRMGFFISFFGVNET 511
Query: 522 EKIFKD 527
++ K+
Sbjct: 512 RELIKE 517
>gi|58585056|ref|YP_198629.1| lysyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|58419372|gb|AAW71387.1| Lysyl-tRNA synthetase class I [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 479
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 123/492 (25%), Positives = 210/492 (42%), Gaps = 46/492 (9%)
Query: 41 HVGNFREIISVDLVVRALRSRGKNVR--FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPI 98
H+G F E+ +V AL+ ++ I DD D RK+P N+P E+L ++L P+
Sbjct: 3 HIGTFGEVFRTTVVANALKKIAPEIKTKIIAVSDDMDGLRKIPDNIPNQEMLREHLNKPL 62
Query: 99 TMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREEL 158
TM+PD F E+Y H + L E+ E Y+ G+Y E + L N +++
Sbjct: 63 TMIPDPFGTHESYGHHMNSLLCKFLDLFEFEYEFRSATECYKSGIYDEKLLLLLKNYDKV 122
Query: 159 KDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLR 217
DI L ++R+E + + P+ + T+ + IE T+ Y + G + +
Sbjct: 123 MDIMLPSFREERQQTYSPFLPICLE-TSQVLQVSVIERNTDKGTITYKDQNGEKIEIPVT 181
Query: 218 KAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFR 275
K + KL W+ DW MRWA +E GKD +A L S +I P+ F
Sbjct: 182 KGR-CKLQWKPDWGMRWAAFGVNYEAHGKDLTP------SAVLSSQICKILGEKPPLLFC 234
Query: 276 YDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIY 335
Y+F L K++ SKG +S+ + L Y P + L+ P + FD+ I
Sbjct: 235 YEFF-LDKEGKKISKSKGNGISIEKWL-TYAPTESLALYIFQSPKKAKRLYFDV----IP 288
Query: 336 EDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGD 395
+ D+ + + K + + I++ +P + I F L NL +
Sbjct: 289 KSTDEYLEFVKRYNEGKEKDINNPAWHIHQ----SKVPNVETSGINFSLLLNLAAACNAK 344
Query: 396 IEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEP 450
+ ++ G P+V P L ++ A + D P + A +A +E
Sbjct: 345 NKEILWGFISTYTPNVTPESNKMLDRLSDFAVRYYHDFVKPTK---AYKAP------NEK 395
Query: 451 ETKAIKTIRDSL--LP---KMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQ 505
E +A+ +++ L LP +E+ + FS K + F +Y+ L+ +
Sbjct: 396 EKEALLDLKNILHSLPITATAEEIQSQIFSI----GKKHNYNNLRDWFQLLYETLLGQKT 451
Query: 506 GPRLAGFMKTIG 517
GPR+ F+K G
Sbjct: 452 GPRMGSFIKLYG 463
>gi|153900196|ref|ZP_02020758.1| lysyl-tRNA synthetase [Methylobacterium extorquens PA1]
gi|151588858|gb|EDN52270.1| lysyl-tRNA synthetase [Methylobacterium extorquens PA1]
Length = 582
Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 137/546 (25%), Positives = 214/546 (39%), Gaps = 69/546 (12%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A K++ ER +G PSG H+G F E+ +V A R K+
Sbjct: 36 WPFEEARKLVARLERKPKSEVLFETGYGPSGLPHIGTFGEVARTSMVRHAFRVLTKDAVP 95
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
R I DD D RKVP N+P E L + L P+T VPD F +++ H+ ++ L
Sbjct: 96 TRLIAFSDDMDGLRKVPDNVPNRERLAEALNLPLTQVPDPFGTHDSFGAHNNAELRRFLD 155
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI----LNTYRDESHKITEEYWPVS 180
G E+ E Y+ G++ + ++ L+ E + I L R S+ PV+
Sbjct: 156 AFGFDYEFRSATECYKAGIFDDTLRLVLERYEAVMAIMLPSLRAERSASYSPFLPIHPVT 215
Query: 181 VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
+ D + + W + E VKL W+ DW MRW
Sbjct: 216 GHVMQVSIDEVRPSAGTIVWRDPATNEAYETPV----TGGHVKLQWKPDWAMRWVALGVD 271
Query: 241 FEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
+E AGKD D+ L R P F Y+ F+ KG K++ SKG ++
Sbjct: 272 YEMAGKD------LIDSVKLSGQIARALGAEPPEGFNYELFLDEKG--QKISKSKGNGLT 323
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDK-TERIAWKAEKAKNDET 356
+ E L PE + LF +P + FD+ + + ++YD R A + K +
Sbjct: 324 IDEWLTYATPE-SLALFMYNKPREAKRLFFDV-IPRNVDEYDNFLGRFAGQEAKHRIGNP 381
Query: 357 FEKEYRIYELSQIDGMPECIS------YQIPFRHLCNLLQINSGDIEAVIKGL-----PD 405
++ L G P + + F L NL+ + + + EAV+ G P+
Sbjct: 382 ------VWHLHA--GAPPAVETIDEAGTTLSFGMLLNLVAVANAEDEAVLWGFIRRYAPN 433
Query: 406 VKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPK 465
V P RL A + D P++ RA +E E A++ + D+L
Sbjct: 434 VGPETHPRLAGLVTRALAYYRDFVRPQK---QYRAP------TEEEAAALRDLSDTLKEH 484
Query: 466 MDEMDEKTFSTALYDA-----------AKECGLEP---KQMFVAVYQALVSKDQGPRLAG 511
D + +Y+ AK P K F ++Y L + QGPR
Sbjct: 485 EASSDPEALQAIVYEVGRRHFPDLSGKAKSPDGRPGVSKTWFASIYNVLFGEAQGPRFGS 544
Query: 512 FMKTIG 517
F+ G
Sbjct: 545 FIALYG 550
>gi|148259720|ref|YP_001233847.1| lysyl-tRNA synthetase [Acidiphilium cryptum JF-5]
gi|146401401|gb|ABQ29928.1| lysyl-tRNA synthetase [Acidiphilium cryptum JF-5]
Length = 519
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 125/531 (23%), Positives = 207/531 (38%), Gaps = 60/531 (11%)
Query: 10 WADQTAEKIIRE--RGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRAL-RSRGKNVR 66
W + AE+++ + +G PSG H+G F E+ + A R G +
Sbjct: 12 WPFREAERVVHRLHKSGKSTALFETGYGPSGLPHIGTFMEVARTSWIRLAFTRLTGLPSK 71
Query: 67 FIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRV 126
+ DD D RKVP N+P+ ++L +++ P+T VPD F ++ H+ ++A L
Sbjct: 72 LLAFSDDMDALRKVPGNVPRQDMLREFIGQPLTRVPDPFGTHPSFGAHNNARLQAFLDSF 131
Query: 127 GIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVFCTAC 186
G E+ E Y G + + ++ + ++DI+ + T Y P+
Sbjct: 132 GFEYEFASSTEYYTSGRFNDALRAVAAKHDVIRDIIRPTLGPERRAT--YSPILPLHPRT 189
Query: 187 NK------DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
+ D +++ W + LD KL W+ DW MRW
Sbjct: 190 GQVMQVAIDEVDVDAASVTWRDPETGILHETSILD----GGAKLQWKADWAMRWFALGVD 245
Query: 241 FEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSL 298
+E +GKD D+ L S R P SF Y+ L K++ SKG +S+
Sbjct: 246 YEMSGKD------LIDSVRLSSAIVRALGGEPPESFTYELF-LDEHGQKISKSKGNGLSV 298
Query: 299 AEVLEVYQP--EVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDET 356
E L Y P + +++FA P + FD+ + + ++Y A D
Sbjct: 299 EEWL-TYAPAESLGQFMFAS--PQRAKRLYFDV-IPRATDEY-----------LANQDNL 343
Query: 357 FEKEYRIYELSQ--IDG--MPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVK 407
E + R + I G +P S IPF L NL + + + ++ G P+
Sbjct: 344 REGKGRAEDNPAWFIHGGEIPTASSSPIPFAMLLNLASVVNAETPDLLWGFIRAYRPEAS 403
Query: 408 PAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMD 467
P L + A + D P + +E E A+ + D L D
Sbjct: 404 PESAPFLARLVDFAVRYYQDFIKPAK---------QYRSPTELERTALLDLADGLKSIPD 454
Query: 468 EMDEKTFSTALYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
D + LYD K ++ F +YQ L+ + +GPR GF+ G
Sbjct: 455 NADAEALQNLLYDVGKRHPFASLREWFGCLYQVLLGQTEGPRFGGFIALYG 505
>gi|114569060|ref|YP_755740.1| lysyl-tRNA synthetase [Maricaulis maris MCS10]
gi|114339522|gb|ABI64802.1| lysyl-tRNA synthetase [Maricaulis maris MCS10]
Length = 529
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 127/503 (25%), Positives = 213/503 (42%), Gaps = 48/503 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRA---LRSRGKNVRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E++ +V+RA L + I DD D RKVP N+P+ +
Sbjct: 39 TGYGPSGLPHMGTFGEVVRTTMVLRAFDALTDGAYEPQLICVSDDMDGMRKVPDNLPQQD 98
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+L ++L+ P+T+VPD F +++ H + L G + E Y+ G Y +
Sbjct: 99 MLNQHLQEPLTVVPDPFGTHDSFGAHMNARLRGFLDGFGFTYTFQSATELYKSGAYDTML 158
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTK-IESWDGDWTLKYSC 206
K+A + +++ + L T E + P+S K +++ G T+ +
Sbjct: 159 KRAAERYDDIMAVMLPTLGAERQATYSPFLPISPKTGRVLYVPMKAVDAAAG--TVTFDD 216
Query: 207 ECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIY 266
E G L + VKL W+ D+ MRWA FE GKDH + + +I
Sbjct: 217 EDGAETTLPV-TGGHVKLQWKPDFGMRWAALGVDFEMFGKDHQTNAPVYSRIC----KIL 271
Query: 267 NWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVI 325
P F Y+ F+ KG K++ SKG +S+ + L+ Y P + + +P T +
Sbjct: 272 GAEPPTQFVYELFLDQKG--EKISKSKGNGLSVEDWLK-YAPAESLSYYNFVKPKTAKRL 328
Query: 326 SFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHL 385
FD+ + K ++Y + +A A + + + + I+ +G P + I F +
Sbjct: 329 YFDV-IPKAVDEY--MQHLAAYAGQTPDKQLENPAWHIH-----NGNPPSDTSPISFALM 380
Query: 386 CNLLQINSGDIEAVIKGL----PDVKPAQVDRLRTR-AECAWNWITDGGAPEEFKFALRA 440
NL S V+ G D AQ L + A A + D P + F +
Sbjct: 381 LNLASAASAHNTEVMWGFIGRYVDGATAQSHPLLDQLAGFAVQYFADFVEPTK-SFRIAT 439
Query: 441 DGSKAELSEPETKAIKTIRDSLLPKM-----DEMDEKTFSTALYDAAKECGLEP-KQMFV 494
D +A + + LL ++ DE D ++ A K E + F
Sbjct: 440 DMERAAMED------------LLVRLRAMDADERDAARIQDEVFAAGKTQEFENLRNWFQ 487
Query: 495 AVYQALVSKDQGPRLAGFMKTIG 517
A+Y+ L+ + QGPR F+ G
Sbjct: 488 ALYEVLLGQSQGPRFGSFVAIYG 510
>gi|145559532|sp|O74059|SYK_CENSY Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|118194866|gb|ABK77784.1| lysyl-tRNA synthetase (class I) [Cenarchaeum symbiosum A]
Length = 525
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 139/548 (25%), Positives = 226/548 (41%), Gaps = 66/548 (12%)
Query: 10 WADQTAEKII-RERG---DLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV 65
W D+ A ++I RE+ D+ SG+ SG H+G+ + + V AL G
Sbjct: 10 WIDKLAHELIEREKALGRSTDMINVESGLGASGIPHMGSLGDAVRAYGVGLALGDMGHAF 69
Query: 66 RFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPR 125
+ I DD D RKVP MP LE+++ P++ +PD + ++Y H + L
Sbjct: 70 KLIAYSDDLDGLRKVPEGMPSS--LEEHIARPVSAIPDPYGCHDSYGMHMSGLLLEGLDA 127
Query: 126 VGIHPEYLYQAERYQKGMYAEGMKKALDNREEL-KDILNTYRDESHKITEEYWPVSVFCT 184
+ I ++ + Y+ G+ +E + L + ++ + I E + + Y+ V C
Sbjct: 128 LNIEYDFRRARDTYRDGLLSEQIHGILSSSSKIGEKIAEMVGQEKFRSSLPYFAV---CG 184
Query: 185 ACNKDTTK--IESWDGDWTLKYSCE-----------CGHCEALDLRKAKSVKLGWRVDWP 231
C K T +E ++Y C CGH D+ A KL W+V++
Sbjct: 185 QCGKMYTAEAVEYVADSRKVRYRCADAKVGGKQVAGCGHEGEADIGGAGG-KLAWKVEFA 243
Query: 232 MRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASS 291
RW FE GKD S VSD I + P P RY+ KG K++ S
Sbjct: 244 ARWQAFDVRFEAYGKDIMD---SVRINDWVSDEILSNPHPHHARYEMFLDKG-GKKISKS 299
Query: 292 KGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAW----- 346
G VV+ + L P+ + L R + + DV + ++Y +R +
Sbjct: 300 SGNVVTPQKWLRYGTPQ-SILLLMYKRITGARELGLE-DVPALMDEYGDLQREYFAGGGR 357
Query: 347 --KAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGD-IEAVIK-- 401
KA +AKN FE Y + Q P +R L L ++ D E V K
Sbjct: 358 GGKAREAKNRGLFE--YANLLVKQAGPRPHA-----AYRLLVELSRLFKEDRAERVTKKL 410
Query: 402 ---GLPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTI 458
G+ D +++RL A N+ D A E L + +K LSE
Sbjct: 411 VEYGVVDGPSPEIERL---IGLAGNYADDMYAAERSDIELD-EATKGALSE--------- 457
Query: 459 RDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIGK 518
L+ + A+Y AK G+ P+ F A+Y+ ++ GPR+ F++ IG+
Sbjct: 458 ---LVELLGSAPGDGLQDAIYGIAKSHGVPPRDFFRALYRIILDTPSGPRIGPFIEDIGR 514
Query: 519 ERLEKIFK 526
E++ + +
Sbjct: 515 EKVAGMIR 522
>gi|73667038|ref|YP_303054.1| lysyl-tRNA synthetase [Ehrlichia canis str. Jake]
gi|72394179|gb|AAZ68456.1| Lysyl-tRNA synthetase (archaeal), class 1c [Ehrlichia canis str.
Jake]
Length = 511
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 131/526 (24%), Positives = 222/526 (42%), Gaps = 54/526 (10%)
Query: 10 WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKNV--RF 67
W Q AEKI++ G+ +G PSG H+G F E++ ++ ALR ++ +
Sbjct: 8 WPFQEAEKILKRFGEDTEIIFETGYGPSGLPHIGTFGEVLRTTAIMNALRKICPDIVTKI 67
Query: 68 IYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVG 127
I DD D RK+P N+P +++ ++L P+TM+PD F ++Y H + L
Sbjct: 68 IVVSDDMDGLRKIPDNIPNKDMIAEHLCKPLTMIPDPFCACKSYGHHMNMLLCKFLDLFN 127
Query: 128 IHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTAC 186
E+ E Y+ G+Y E + L N +++ ++ L T E K + PV C
Sbjct: 128 FQYEFKSATECYKNGLYDEKLLLLLKNYDKVMNVMLPTLGSERQKTYSPFLPV---CPKT 184
Query: 187 NKDTTKIESWDGD---WTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEP 243
+K ++ D D T+ Y E + K KL W+ DW MRW+ +E
Sbjct: 185 SK-VLQVPIIDLDVELGTISYKNEDDEIIKTQVTGGK-CKLQWKPDWGMRWSALNIKYEA 242
Query: 244 AGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVL 302
GKD S + +S + + + + P P+ F Y+ F+ +G K++ SKG +S+ + L
Sbjct: 243 YGKDLQP---SAELSSKICEILGSAP-PILFCYELFLDKEG--RKISKSKGNGISIEDWL 296
Query: 303 EVYQPEVARYLFAGTRPNTEFVISFDL------DVIKIYEDYDKTERIAWKAEKAKNDET 356
Y P + L+ P + FD+ D + + +DY KN
Sbjct: 297 S-YAPSESLALYILQNPKKAKKLYFDVIPRSMDDYLYLVDDYH------------KNPSY 343
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQI----NSGDIEAVIKGLPDVKPAQVD 412
+ I+ S +P + + F L NL NS + IK D Q +
Sbjct: 344 DNPVWHIHHGS----VPIVDIFGLSFSLLLNLASACNAENSDVLWGFIKNYQDNHALQDN 399
Query: 413 RLRTR-AECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDE 471
RL ++ + + + D P +K D + + + + + + DE+
Sbjct: 400 RLLSQLVDFSVKYYHDFVKP--YKVYKTPDHDEKIILDELKNMLNDFPNDITS--DEIQS 455
Query: 472 KTFSTALYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
FS K C + + F + Y+ L+ + GPRL F+K G
Sbjct: 456 NIFSL----MKKYCFNDLRSCFKSFYEILLGQSHGPRLGSFIKLYG 497
>gi|156449220|ref|ZP_02055603.1| lysyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
gi|156191757|gb|EDO23943.1| lysyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
Length = 582
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 135/540 (25%), Positives = 213/540 (39%), Gaps = 57/540 (10%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A K++ ER +G PSG H+G F E+ +V A R K+
Sbjct: 36 WPFEEARKLVARLERKPKSEVLFETGYGPSGLPHIGTFGEVARTSMVRHAFRVLTKDAVP 95
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
R I DD D RKVP N+P E L + L P+T VPD F +++ H+ ++ L
Sbjct: 96 TRLIAFSDDMDGLRKVPDNVPNRERLAEALNLPLTQVPDPFGTHDSFGAHNNAELRRFLD 155
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI----LNTYRDESHKITEEYWPVS 180
G E+ E Y+ G++ + ++ L+ E + I L R S+ PV+
Sbjct: 156 AFGFDYEFRSATECYKAGIFDDTLRLVLERYEAVMAIMLPSLRAERSASYSPFLPIHPVT 215
Query: 181 VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
+ D + + W + E VKL W+ DW MRW
Sbjct: 216 GHVMQVSIDEVRPSAGTIVWRDPATNEAYETPV----TGGHVKLQWKPDWAMRWVALGVD 271
Query: 241 FEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
+E AGKD D+ L R P F Y+ F+ KG K++ SKG ++
Sbjct: 272 YEMAGKD------LIDSVKLSGQIARALGVEPPEGFNYELFLDEKG--QKISKSKGNGLT 323
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDK-TERIAWKAEKAKNDET 356
+ E L PE + LF +P + FD+ + + ++YD R A + K +
Sbjct: 324 IDEWLTYATPE-SLALFMYNKPREAKRLFFDV-IPRNVDEYDNFLGRFAGQEAKHRLGNP 381
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQV 411
E ++ + E + F L NL+ + + + EAV+ G P+V P
Sbjct: 382 VW-HLHAGEPPAVETIDEA-GTTLSFGMLLNLVAVANAEDEAVLWGFIRRYAPNVGPETH 439
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDE 471
RL A + D P++ RA +E E A++ + ++L D
Sbjct: 440 PRLAGLVTRALAYYRDFVRPQK---QYRAP------TEEEAAALRDLSETLKEHEASTDP 490
Query: 472 KTFSTALYDA-----------AKECGLEP---KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+ +Y+ AK P K F ++Y L + QGPR F+ G
Sbjct: 491 EALQAIVYEVGRRHFPDLSGKAKSPDGRPGVSKTWFASIYNVLFGEAQGPRFGSFIALYG 550
>gi|85373422|ref|YP_457484.1| lysyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
gi|84786505|gb|ABC62687.1| lysyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
Length = 546
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 138/569 (24%), Positives = 220/569 (38%), Gaps = 101/569 (17%)
Query: 10 WADQTAEKIIRERGDL----DVYTCASGITPSGTVHVGNFREIISVDLVVRAL------R 59
W Q A+++++ D + +G PSG H+G F+E++ LV RA R
Sbjct: 16 WPFQEAQRLLKRYPDGKPGGEPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAYEAIIGAR 75
Query: 60 SRGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHD 118
R + DD D RKVP N+ + +VLE L P++ +P F + ++YA H+
Sbjct: 76 PEDGKTRLVAFSDDMDGLRKVPDNIDRKDVLEANLHKPLSRIPSPFSNEHDSYAAHNNAK 135
Query: 119 VEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYW 177
+ L R +++ ++ Y G + E +K+ L +++ DI L T R E
Sbjct: 136 LREFLDRFCFDYDFVASSDMYNSGQFDEALKQVLRKNQDILDIMLPTLRAERAATYSPVL 195
Query: 178 PVS--------VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVD 229
P+S V + +T + D D T+ G KL W+VD
Sbjct: 196 PISPETGRVLQVPVEVVDAETGIVRFTDEDGTVVEQSALG----------GMAKLQWKVD 245
Query: 230 WPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKM 288
W MRW +E GKD G + +V ++ P Y+ F+ KG K+
Sbjct: 246 WAMRWYALGVDYEMYGKDLTDSG--VQSGRIV--KVLGGRKPEGLIYELFLDEKG--EKI 299
Query: 289 ASSKGKVVSLAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVI-KIYEDYDKTERIAW 346
+ SKG +++ E L E + Y+F PN + + VI + +DY W
Sbjct: 300 SKSKGNGLTIEEWLTYGTEESLGFYIF----PNPKSAKQLHVGVIPRAVDDY-------W 348
Query: 347 KAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQIN----SGDIEAVIKG 402
+ + ++ EK+ G P NLL++N GD A G
Sbjct: 349 QFRERIPEQELEKQL---------GNPA-----------WNLLRVNGDWPEGDRVAEAPG 388
Query: 403 LPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL 462
D P L A T+ + L EL A+ RD +
Sbjct: 389 AGDSLPVTYGLLLNLASVLGAEATEQNLADYLDTYLDGAERGPELDALIACAVAYTRDYI 448
Query: 463 LPKMDE------------------------MDEKTFSTALYDAAK--ECGLEP-KQMFVA 495
+P +++ M + T +Y+ K E G E + F A
Sbjct: 449 VPTLNKRAPAPNEAAALHELDTFLAEADPAMSAEDLQTQVYEIGKKEEYGFESLRDWFKA 508
Query: 496 VYQALVSKDQGPRLAGFMKTIGKERLEKI 524
+YQ L+ DQGPR+ F+K G +I
Sbjct: 509 LYQTLLGTDQGPRMGSFIKLYGMTNTRRI 537
>gi|148556468|ref|YP_001264050.1| lysyl-tRNA synthetase [Sphingomonas wittichii RW1]
gi|148501658|gb|ABQ69912.1| lysyl-tRNA synthetase [Sphingomonas wittichii RW1]
Length = 583
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 127/499 (25%), Positives = 210/499 (42%), Gaps = 39/499 (7%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ +V RA R I DD D RKVP N+P E+L
Sbjct: 98 TGYGPSGLPHIGTFNEVLRTTMVRRAYEEMSDVPTRLIAFSDDMDGLRKVPDNVPNQEML 157
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+L P+T +PD F + E++A H+ + L R G ++ E Y+ G + E +K
Sbjct: 158 RAHLGKPLTKIPDPFGKYESFAHHNNAMLREFLDRFGFDYDFRSSTEAYESGQFDEALKD 217
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSCECG 209
L + + + I L T R E P+S + +E D D L + G
Sbjct: 218 ILRHYDGIMGIMLPTLRKERQATYSPVLPISP--KSGVVLQVPVEVVDADQGLIRFDDEG 275
Query: 210 HCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWP 269
+ K+ KL W+VDW MRW +E +GKD S +S ++ + P
Sbjct: 276 ETVVQSILGGKA-KLQWKVDWAMRWVALGVDYEMSGKDLID---SVVQSSKIARELGARP 331
Query: 270 APVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFD 328
P F Y+ F+ KG K++ SKG +SL + L Y PE + +A P +
Sbjct: 332 -PEGFNYEMFLDEKG--EKISKSKGNGLSLEQWL-TYGPEESLAFYAYREPKKAKQLHMG 387
Query: 329 LDVIKIYEDYDKTERIAWKAEKAKNDETFEKE-----YRIYELSQIDGMPECISYQIPFR 383
+ + + +DY W+ + E++ + I+ + D +P+ + + F
Sbjct: 388 V-IPRAVDDY-------WQFRGNYPGQPIEQKLGNPVHHIHGATG-DAVPDNV-LPVTFG 437
Query: 384 HLCNLLQINSGDIEAVIKG-----LPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFAL 438
L NL+ + + + G +PD A+ L A + D AP K
Sbjct: 438 LLLNLVGVMGDASKEQVWGYLANYVPDASAAKYPELDRLIGHALAYHRDFVAP-TLKRRK 496
Query: 439 RADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEPKQMFVAVYQ 498
D A L + K D+ +++ + ++ +A L + F A+Y+
Sbjct: 497 PTDNEAAALRALDAKLAAMPADA---SAEDIQNEVYAIGKEEAHGFASL--RDWFKALYE 551
Query: 499 ALVSKDQGPRLAGFMKTIG 517
L+ +QGPR+ F+ G
Sbjct: 552 TLLGAEQGPRMGSFIALYG 570
>gi|54288378|gb|AAV31666.1| predicted lysyl-tRNA synthetase [uncultured alpha proteobacterium
EBAC2C11]
Length = 537
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 128/514 (24%), Positives = 214/514 (41%), Gaps = 52/514 (10%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRS-RGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E++ +V A G+ R + DD D FRKVP N+P E+L
Sbjct: 45 TGYGPSGLPHIGTFGEVVRTTMVRHAYEVLTGQKTRLVCFSDDMDGFRKVPDNVPNQEML 104
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
YL P+T V D F ++ H+ ++A L G E++ + Y G + + +
Sbjct: 105 VAYLNKPLTKVKDPFGTATSFGEHNNLRLQAFLDSFGFDYEFVSSTDCYLGGKFDATLLR 164
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSCECG 209
L+ + + +I L T E ++P+ DT ++ ++ + G
Sbjct: 165 VLEQYDAIMNIMLPTLGPERQATYSPFFPIC-------PDTGRVLQAK---VVERNVAAG 214
Query: 210 HCEALD----LRKAKSV-----KLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASL 260
+D + SV KL W+ DW MRW +E +GKD S +S
Sbjct: 215 KITYIDPDSGAERETSVTGGCCKLQWKCDWAMRWFALGVDYEMSGKDLID---SVTQSSK 271
Query: 261 VSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRP 319
++ + P P Y+ F+ G K++ SKG +S+ + L PE + LF +P
Sbjct: 272 ITRALGGVP-PAGISYELFLDENG--EKISKSKGNGLSVEDWLRYGSPE-SLSLFMYGQP 327
Query: 320 NTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQ 379
+ FD+ + E Y ++A ++E E E I+ + G+PE
Sbjct: 328 KRAKRLYFDVIPKTVDEYYQHLGKLANQSEA----EVLENP--IWHIHS--GVPEQAGLP 379
Query: 380 IPFRHLCNLLQI-NSGDIEAVIKGLPD----VKPAQVDRLRTRAECAWNWITDGGAPEEF 434
+ F L NL + ++ D + V + D + P + A N+ D P
Sbjct: 380 VSFTLLLNLAAVCHAEDPQIVWAYVNDYTGEISPQTHHEMDRMISYAVNYYQDMVRPH-- 437
Query: 435 KFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP-KQMF 493
K AD ++A E AI LP D+ D + + +Y K E + F
Sbjct: 438 KTYRLADATEAINLEILKTAIAG-----LP--DDCDGEAIQSIVYATGKAANYENLRDWF 490
Query: 494 VAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
+YQ L+ + +GPR+ F G+ + ++ D
Sbjct: 491 KCLYQVLLGQSEGPRMGSFFALYGRTKSVQLIDD 524
>gi|90422250|ref|YP_530620.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
gi|90104264|gb|ABD86301.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
Length = 546
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 126/520 (24%), Positives = 208/520 (40%), Gaps = 70/520 (13%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A R ++ R I DD D RKVP N+P E
Sbjct: 47 TGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDKIKTRLIAFSDDMDGLRKVPDNVPNKE 106
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+L +L +T VPD F E++ H+ + L G E+ + Y+ G + +
Sbjct: 107 MLTTHLGKSLTRVPDPFGTHESFGAHNNARLRVFLDTFGFDYEFASATDYYKSGRFDATL 166
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWD 197
K L+ +++ I L + R+E + P V + T + +
Sbjct: 167 LKVLERLDKVMAIMLPSLREERAASYSPFLPICPRTGVVLQVPIVAHDATAGTISYDDPE 226
Query: 198 GDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
+ GHC KL W+ DW MRW +E AGKD S
Sbjct: 227 TQERVTLPVTGGHC-----------KLQWKPDWAMRWTALGIDYEMAGKDLID---SVKL 272
Query: 258 ASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAG 316
+ + I P P F Y+ F+ KG K++ SKG +++ E L PE + LF
Sbjct: 273 SGKICQAIGGKP-PEGFNYELFLDDKG--QKISKSKGNGLTIDEWLRYASPE-SLSLFMY 328
Query: 317 TRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECI 376
P + FD+ + + +DY + + A+ D + ++ + G P
Sbjct: 329 REPKAAKRLYFDV-IPRNVDDYQQ-----FLDGYARQDAKQQLSNPVWHIHA--GHPPKS 380
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ F+ L L+ ++ + A + G P V P +L A N+ D AP
Sbjct: 381 DMPVTFQLLLTLVSSSNAENAATLWGFIGRYRPGVTPQSHPKLDAMVGYAINYYRDFVAP 440
Query: 432 EE-FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAA-KECGLEP 489
+ F+ E +E E A++ +RD+L E + +Y+ +E L+
Sbjct: 441 TKVFR----------EPTEAERAALQDLRDALSQLPAEATAEAIQDVVYEIGRREPFLDH 490
Query: 490 KQM------------FVAVYQALVSKDQGPRLAGFMKTIG 517
K+ F +YQ L+ +++GPR F+ G
Sbjct: 491 KKAAKDGKPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYG 530
>gi|51891346|ref|YP_074037.1| lysyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
gi|51855035|dbj|BAD39193.1| lysyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
Length = 509
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 28/263 (10%)
Query: 1 MSNEKKLLHWADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRS 60
MSN L W Q A++II D Y +G SG H+G E++ V +ALR
Sbjct: 2 MSNYPNL--WPYQEAQRIIERWPDKPRYILETGFGASGHPHMGTIGEVVRTFYVAKALRE 59
Query: 61 RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
G+ I DD D RK+P N+ P L+++L P+T +PD + +++ H + ++
Sbjct: 60 MGRESEIIVFSDDMDGLRKIPTNIDAP-WLQEHLGKPVTRIPDPYGCHQSFGHHMDAELL 118
Query: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEYWPV 179
++ + I + + Y G + EG++ + + + D +L T R E+ E ++P
Sbjct: 119 EMMAKTEIQATFRSATDCYADGTFDEGIRHMFRHMQGIIDLVLPTMRPENR---EGWFPW 175
Query: 180 SVFCTACNK-DTTKIESWDGDW-TLKYSCE--------CGHCEALDLRKAKSV-----KL 224
C C K TT++ES+D D T+ YSC CG+ R +S K
Sbjct: 176 LPVCENCGKVYTTRVESYDPDAVTVTYSCTGSFRDVHGCGY------RGTQSALGGRGKF 229
Query: 225 GWRVDWPMRWAFEKTVFEPAGKD 247
W+ DW +RW FE GKD
Sbjct: 230 FWKADWALRWYVFGVNFEMHGKD 252
>gi|56416823|ref|YP_153897.1| lysyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
gi|56388055|gb|AAV86642.1| lysyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
Length = 533
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 99/341 (29%), Positives = 152/341 (44%), Gaps = 18/341 (5%)
Query: 5 KKLLH--WADQTAEKIIRERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--S 60
K ++H W + AE+I++ G+ + G PSG H+G E++ V ALR S
Sbjct: 18 KAVVHSSWPFKEAERILQAFGEEREVILSVGYGPSGLPHIGTLGEVVRTTFVANALREIS 77
Query: 61 RGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVE 120
+ + + DD D RKVP N+P+ +++ + L P+T +PD F ++Y H H
Sbjct: 78 PNTSTKILAFSDDMDGLRKVPENIPQYDMVAECLGRPLTSIPDPFGTHQSYGHHMNHVFC 137
Query: 121 AVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPV 179
L R G+ E E Y+ G+Y + K L N ++ K +L T +E K + PV
Sbjct: 138 EFLDRFGVEYELKSATECYKSGVYDSVLLKLLQNYDKATKILLATVGEERQKTYSPFLPV 197
Query: 180 SV-FCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEK 238
KI+ G T+ Y G+ + + KL W+ DW MRWA
Sbjct: 198 CPETLQVLQVPIVKIDVTSG--TIFYEDSNGNLVETPVTGGR-CKLQWKADWGMRWAAFD 254
Query: 239 TVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
+E GKD S ++ V +I PV F Y+ F+ G K++ SKG S
Sbjct: 255 VRYEAHGKDLTP---SVKPSAEVC-KILGKTPPVLFPYELFLDRDG--KKISKSKGNGFS 308
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDY 338
+ E L P + L+ P + FD+ V K +DY
Sbjct: 309 VEEWLSC-APYESLALYVFQNPKRAKRLCFDV-VPKFVDDY 347
>gi|92115832|ref|YP_575561.1| lysyl-tRNA synthetase [Nitrobacter hamburgensis X14]
gi|91798726|gb|ABE61101.1| lysyl-tRNA synthetase [Nitrobacter hamburgensis X14]
Length = 543
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 128/544 (23%), Positives = 218/544 (40%), Gaps = 72/544 (13%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A +I+ ++ D +G PSG H+G F E+ +V A R ++
Sbjct: 20 WPFEQARQIVARLKKTPKDEVLFETGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDRIK 79
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
R + DD D RKVP N+P E+L + L P+T V D F ++ H+ + A L
Sbjct: 80 TRLLAFSDDMDGLRKVPDNVPNKELLAQDLGKPLTKVRDPFGTHPSFGEHNNARLRAFLD 139
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWP----- 178
G E+ Y G + + K L+N +++ I L + R+E + P
Sbjct: 140 TFGFDYEFASSTAYYTSGRFDATLLKMLENIDKVMAIMLPSLREERAASYSPFLPICPRT 199
Query: 179 -----VSVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMR 233
V V T + + + GHC KL W+ DW MR
Sbjct: 200 GVVLQVPVVAHDAKAGTISYDDPETGEQVTVPVTGGHC-----------KLQWKPDWAMR 248
Query: 234 WAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSK 292
W +E AGKD S + + + P P F Y+ F+ KG K++ SK
Sbjct: 249 WTALCVDYEMAGKDLID---SVKLSGKICSALGGTP-PEGFNYELFLDDKG--QKISKSK 302
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAK 352
G +++ E L PE + LF P + FD+ + + +DY + + +
Sbjct: 303 GNGITIDEWLRYASPE-SLSLFMYREPKAAKRLHFDV-IPRNVDDYQQ-----FLDGYPR 355
Query: 353 NDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVK 407
D + ++ + G P + F+ L L+ ++ + + G P V
Sbjct: 356 QDARQQLANPVWHIHA--GRPPAADMPVTFQLLLTLVSSSNAENTETLWGFIGRYRPGVT 413
Query: 408 PAQVDRLRTRAECAWNWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKM 466
P +L A N+ D AP ++F+ E +E E+ A++ +RD+L
Sbjct: 414 PQTHPKLDALVGYAINYYRDFVAPTKQFR----------EPTESESAALQDLRDALSQLP 463
Query: 467 DEMDEKTFSTALYDAA-KECGLEPKQM------------FVAVYQALVSKDQGPRLAGFM 513
++ + A+Y+ +E L K++ F +YQ L+ +++GPR F+
Sbjct: 464 ADVSAEDIQNAVYEIGRREPFLNHKKLAKDGRPGVSLDWFNMLYQVLLGQEKGPRFGSFV 523
Query: 514 KTIG 517
G
Sbjct: 524 AVYG 527
>gi|49474853|ref|YP_032894.1| lysyl-tRNA synthetase [Bartonella henselae str. Houston-1]
gi|49237658|emb|CAF26840.1| Lysyl-tRNA synthetase [Bartonella henselae str. Houston-1]
Length = 553
Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 132/548 (24%), Positives = 221/548 (40%), Gaps = 57/548 (10%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A KII+ + G + +G PSG H+G F E+ +V A + +N
Sbjct: 25 WPFEEARKIIKRYEKTGYPERVIFETGYGPSGLPHIGTFGEVARTTMVRHAFQILTENKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTF-ERDENYARHHEHDVEAV 122
+ + DD D RKVP N+P E +E YL P++ +PD F + ++ + + A
Sbjct: 85 KTKLLCFSDDMDGLRKVPDNVPDREKVESYLGQPLSRIPDPFGDMYPSFGAANNARLRAF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSV 181
L R G E+ + Y G + E + K LD +++ I L T +E + P+S
Sbjct: 145 LDRFGFDYEFASATDYYSSGRFDETLLKILDCYDKVMAIVLPTLGEERRATYSLFLPISP 204
Query: 182 FCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
F + + + E G ++ K VK W+VDW MRW +
Sbjct: 205 FSGKVLQVPMIARNVEKGTVTYIEPETGETIETEVTGGK-VKCQWKVDWAMRWTALGVDY 263
Query: 242 EPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLA 299
E AGKD D+ +L S ++ P F Y+ L + K++ SKG +++
Sbjct: 264 EMAGKD------LIDSTNLSSKICKVLGGKPPEGFNYELF-LDEMGQKISKSKGNGLTID 316
Query: 300 EVLEVYQPEVARYLFAGTRPNTEFVISFDL---DVIKIYEDYDKTERIAWKAEKAKNDET 356
E L Y P + L+ +P T + FD+ V + Y R W+ D
Sbjct: 317 EWL-TYAPTESLGLYMFAKPKTAKRLYFDVIPKAVDEYYAHLSAYGRQKWQ------DRL 369
Query: 357 FEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQV 411
+ I+ +G P + F L NL+ ++ + + V+ G +
Sbjct: 370 NNPVWHIH-----NGCPPQGDLPVSFAMLLNLVSASNAENKEVLWGFISRYAKEANAQTY 424
Query: 412 DRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSE--------PETKAIKTIRDSLL 463
L + A + P + KF D +A L++ PET TI+++LL
Sbjct: 425 PELDQLVQFAIKYFDVFVKPNK-KFRAADDSERATLAQIDAKLASLPETADGNTIQNALL 483
Query: 464 PKMDEMDEKTFSTALYDAAK---ECGLEPKQMFVA-VYQALVSKDQGPRLAGFMKTIGKE 519
D + D K E G +F +Y+ L+ +++GPRL F+ G
Sbjct: 484 ------DVARLTERYQDHNKKSPEGGPGVSNVFFQMLYEVLLGQERGPRLGSFIALYGIN 537
Query: 520 RLEKIFKD 527
+ + +
Sbjct: 538 EMRALIAE 545
>gi|148252373|ref|YP_001236958.1| lysyl tRNA synthetase ( Lysine--tRNA ligase) [Bradyrhizobium sp.
BTAi1]
gi|146404546|gb|ABQ33052.1| lysyl tRNA synthetase ( Lysine--tRNA ligase) [Bradyrhizobium sp.
BTAi1]
Length = 548
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 130/550 (23%), Positives = 216/550 (39%), Gaps = 83/550 (15%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A+ I+ ++ D +G PSG H+G F E+ +V A R ++
Sbjct: 24 WPFEQAKAIVNRLKKTPKDEVLFETGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDKIK 83
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAVL 123
R + DD D RKVP N+P E+L +L P++ +PD F + ++A H+ + A L
Sbjct: 84 TRLLAFSDDMDGLRKVPDNVPNKEMLASHLGKPLSRIPDPFSNEYPSFAAHNNARLRAFL 143
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWP---- 178
R G E+ E Y G + + + L+ E++ I L + R+E + P
Sbjct: 144 DRFGFDYEFASSTEYYTSGKFDAALLRMLERLEKVMAIMLPSLREERAASYSPFLPICPR 203
Query: 179 ------VSVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPM 232
V + T + + + GHC KL W+ DW M
Sbjct: 204 TGLVLYVPIVAHDAKAGTISYDDPETKERMTVPVTGGHC-----------KLQWKPDWAM 252
Query: 233 RWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRI---YNWPAPVSFRYD-FIGLKGVPGKM 288
RW +E AGKD D+ L S +I P F Y+ F+ KG K+
Sbjct: 253 RWHALGVDYEMAGKD------LIDSVKL-SGKICAALGGTPPEGFNYELFLDEKG--QKI 303
Query: 289 ASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKA 348
+ SKG +++ E L PE + LF P + FD+ + + +DY + +
Sbjct: 304 SKSKGNGLTIDEWLRYASPE-SLSLFMYREPKAAKRLYFDV-IPRNVDDYQQ-----FLE 356
Query: 349 EKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL----- 403
AK D + ++ + G P + F+ L L+ ++ + + G
Sbjct: 357 GFAKQDPKQQLGNPVWHIHS--GTPPKADMPVTFQLLLTLVSSSNAENAETLWGFIGRYR 414
Query: 404 PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
P V P +L A N+ D AP + + E +E E A++ +RD+L
Sbjct: 415 PGVTPQTHPKLDAMVGYAINYYRDFVAPTK---------TFREPTEGERVALQDLRDALS 465
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEP----------------KQMFVAVYQALVSKDQGP 507
E + +Y+ + EP F +YQ L+ +++GP
Sbjct: 466 NLPAEAPAEDIQNVVYEIGRR---EPFLDHAKKGKDGRPGVSLDWFNMLYQVLLGQEKGP 522
Query: 508 RLAGFMKTIG 517
R F+ G
Sbjct: 523 RFGSFVAVYG 532
>gi|58040335|ref|YP_192299.1| lysyl-tRNA synthetase [Gluconobacter oxydans 621H]
gi|58002749|gb|AAW61643.1| Lysyl-tRNA synthetase [Gluconobacter oxydans 621H]
Length = 543
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 128/520 (24%), Positives = 208/520 (40%), Gaps = 63/520 (12%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRS-RGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ V +A + G+ R + DD D RKVP N+P+ E+L
Sbjct: 51 TGYGPSGLPHIGTFGEVARTTWVRQAYEALTGRPTRLLAFSDDMDALRKVPTNVPEQEML 110
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
K+L P+T VPD F +++A H+ + L G E+ + Y G + +++
Sbjct: 111 AKHLGLPLTRVPDPFGEYDSFAAHNNARLRQFLDSFGFDYEFASATQYYTNGTFDAALRR 170
Query: 151 ALDNREEL-KDILNTYRDESHKITEEYWPV--------SVFCTACNKDT-TKIESWDGDW 200
L+ +E+ I+ T E P+ V + D T + +
Sbjct: 171 MLEVHDEVVATIIPTLGPERRATYSPVLPIHPETGQVMQVPIIKVDPDAGTVVWKDEAGK 230
Query: 201 TLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASL 260
T + S GH K+ W+ DW MRW +E +GKD D+ L
Sbjct: 231 TFETSVLGGH-----------AKMQWKADWAMRWYALGVDYEMSGKD------LIDSVKL 273
Query: 261 VSD--RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPE-VARYLFAGT 317
S RI P Y+ L K++ SKG +S+ E L PE +A+Y+F
Sbjct: 274 SSKICRILGKEPPAGLTYELF-LDAQGQKISKSKGNGLSVEEWLRYGTPESLAQYMF--Q 330
Query: 318 RPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECIS 377
+P + FD+ + + +DY + KAE + E I PE S
Sbjct: 331 QPTRAKRLFFDV-IPRATDDY---LTLVQKAETQEGPELMANPVWFIHGGTI--RPEDTS 384
Query: 378 YQIPFRHLCNLLQINSGDI-EAVIKGL----PDVKPAQ---VDRLRTRAECAWNWITDGG 429
+ + L NL + + D E + K L P + P VDRL CA +
Sbjct: 385 -PVSYTALLNLANVANADKPETLWKFLRRYDPTLSPETHPYVDRL---VHCALTY----- 435
Query: 430 APEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGLEP 489
FK + + + +E E K ++ + D L + +++ K +P
Sbjct: 436 ----FKEQVYPNKTYRAPTETERKGLEDLADELAKLAPDTAPGDVQDVVFEVGKRYFAKP 491
Query: 490 --KQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
+ F +Y+ L+ + +GPR F G + +D
Sbjct: 492 ELRSWFGCLYEVLLGQTEGPRFGIFASLFGLPETVGLIRD 531
>gi|115522762|ref|YP_779673.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
gi|115516709|gb|ABJ04693.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
Length = 546
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 124/523 (23%), Positives = 210/523 (40%), Gaps = 76/523 (14%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A R ++ R I DD D RKVP N+P E
Sbjct: 47 TGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDKIKTRLIAFSDDMDGLRKVPDNVPNKE 106
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+L ++L ++ VPD F E++ H+ + A L E+ + Y+ G + +
Sbjct: 107 LLSQHLGKSLSSVPDPFGTHESFGAHNNARLRAFLDTFSFDYEFASATDYYKSGRFDATL 166
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWD 197
K L +++ I L + R+E + P V + T + +
Sbjct: 167 LKVLQRLDKVMAIMLPSLREERAASYSPFLPICPRTGVVLQVPIAAHDVAAGTISYDDPE 226
Query: 198 GDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
+ + GHC KL W+ DW MRW +E AGKD S
Sbjct: 227 TNERVTLPVTGGHC-----------KLQWKPDWAMRWTALGIDYEMAGKDLID---SVKL 272
Query: 258 ASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAG 316
+ + I P P F Y+ F+ KG K++ SKG +++ E L PE + LF
Sbjct: 273 SGKICQAIGGTP-PEGFNYELFLDDKG--QKISKSKGNGLTIDEWLRYASPE-SLSLFMY 328
Query: 317 TRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECI 376
P + FD+ + + +DY + + ++ D + ++ + G P
Sbjct: 329 REPKAAKRLYFDV-IPRNVDDYQQ-----FLDGFSRQDAKQQLSNPVWHIHA--GQPPKA 380
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ F+ L L+ ++ + A + G P V P +L A N+ D AP
Sbjct: 381 DMPVTFQLLLTLVSSSNAENAATLWGFIGRYRPGVSPQTHPKLDAMVGYAINYYRDFVAP 440
Query: 432 EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECG----- 486
+ S E ++ E A++ +RD+L + ++ + A+ D E G
Sbjct: 441 TK---------SFREPTDQERAALQDLRDAL----SHLPAESTAEAIQDVVYEIGRREPF 487
Query: 487 LEPKQM------------FVAVYQALVSKDQGPRLAGFMKTIG 517
L+ K+ F +YQ L+ +++GPR F+ G
Sbjct: 488 LDHKKAAKDGKPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYG 530
>gi|39937743|ref|NP_950019.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
gi|39651603|emb|CAE30125.1| lysyl tRNA synthetase [Rhodopseudomonas palustris CGA009]
Length = 545
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 126/524 (24%), Positives = 210/524 (40%), Gaps = 78/524 (14%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A R + + + DD D RKVP N+P E
Sbjct: 46 TGYGPSGLPHIGTFGEVARTTMVRHAFRVLTDDKIKTKLLAFSDDMDGLRKVPDNVPNKE 105
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+LEK L +T VPD F +++ H+ + A L G E+ E Y+ G + +
Sbjct: 106 LLEKNLGKSLTSVPDPFGTHDSFGAHNNARLRAFLDTFGFDYEFASATEYYKSGRFDATL 165
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWD 197
K L+ E++ I L + R+E + P V + T + +
Sbjct: 166 LKVLERLEKVMAIMLPSLREERAASYSPFLPICPRTGVVLQVPIVAHDVKAGTISYDDPE 225
Query: 198 GDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
+ + GHC KL W+ DW MRW +E AGKD S
Sbjct: 226 TNERITVPVTGGHC-----------KLQWKPDWAMRWTALGVDYEMAGKDLID---SVKL 271
Query: 258 ASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAG 316
+ ++ I P P F Y+ F+ KG K++ SKG +++ E L PE + LF
Sbjct: 272 SGKIAQAIGGTP-PEGFNYELFLDDKG--QKISKSKGNGLTIEEWLRYASPE-SLSLFMY 327
Query: 317 TRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECI 376
P + FD+ I + D+ ++ + A+ D ++ + G P
Sbjct: 328 REPKAAKRLYFDV----IPRNVDEYQQ--FLDGYARQDLKQRLANPVWHIHS--GNPPQA 379
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ F+ L L+ ++ + + G P V P +L A N+ D AP
Sbjct: 380 DMPVTFQLLLTLVSSSNAENADTLWGFIGRYRPGVTPQSHPKLDAMVGYAINYYRDFVAP 439
Query: 432 EE-FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECG---- 486
+ F+ + ++ E A++ +RD+L ++ + A+ D E G
Sbjct: 440 TKVFR----------DPTDAERAALQDLRDAL----SQLPADATAEAIQDVVYEIGRREP 485
Query: 487 -LEPKQM------------FVAVYQALVSKDQGPRLAGFMKTIG 517
L+ K+ F +YQ L+ +++GPR F+ G
Sbjct: 486 FLDHKKTAKDGKPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYG 529
>gi|16124339|ref|NP_418903.1| lysyl-tRNA synthetase [Caulobacter crescentus CB15]
gi|27805746|sp|Q9ABY6|SYK_CAUCR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|13421183|gb|AAK22071.1| lysyl-tRNA synthetase [Caulobacter crescentus CB15]
Length = 552
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 131/547 (23%), Positives = 216/547 (39%), Gaps = 77/547 (14%)
Query: 11 ADQTAEKIIRERGDLDVYTCA-----------SGITPSGTVHVGNFREIISVDLV---VR 56
ADQ A K + + G D A +G PSG H+G F E+ +V R
Sbjct: 36 ADQDAAKALIDAGKTDEAVKAYPALAKAVIFETGYGPSGLPHLGTFGEVARTTMVRQAFR 95
Query: 57 ALRSRGKNVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHE 116
AL R I DD D RKVP N+ + L + L P+T+V D F +++ H+
Sbjct: 96 ALTDEAIPTRLIAFSDDMDGLRKVPDNIENKQPLIEDLGKPLTVVRDPFGTHDSFGAHNN 155
Query: 117 HDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEE 175
+ A L G E++ + Y+ G++ + AL+ + ++ + L T +E
Sbjct: 156 ARLRAFLDGFGFEYEFVSSTDCYKGGLFDATLLTALERFDAIQKVMLPTLGEERRATYSP 215
Query: 176 YWPVS----------VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLG 225
+ P+S K T E DG ++ GH VK+
Sbjct: 216 FLPISPSTGKVLQVPTLERNVEKGTIVFEDEDGS-KVEVPVTGGH-----------VKMQ 263
Query: 226 WRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVP 285
W+ DW MRW +E +GKD S + + + P P F Y+ L
Sbjct: 264 WKPDWAMRWTALGVDYEMSGKDLID---SVKASGAICKALGGVP-PEGFNYELF-LDENN 318
Query: 286 GKMASSKGKVVSLAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERI 344
K++ SKG +S+ + L PE ++ Y+F P + + FD+ + K ++Y +
Sbjct: 319 QKISKSKGNGLSMEDWLRYGAPESLSYYMFQS--PKSAKKLYFDV-IPKASDEYLQQLDG 375
Query: 345 AWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG-- 402
+ E AK + + I+ G P + F + NL+ + ++ G
Sbjct: 376 FGRQEPAKQLDN--PVWHIH-----GGKPPQQGSPVSFSLMLNLVSAADASTKEILWGFL 428
Query: 403 ---LPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIR 459
+P P L A A N+ D P + F +D +A + +
Sbjct: 429 SRYIPGASPETQPLLDRLAGYAINYYEDFVKPSKV-FRAPSDQERAAMLD---------- 477
Query: 460 DSLLPKMDEM-----DEKTFSTALYDAAKECGLEP-KQMFVAVYQALVSKDQGPRLAGFM 513
LL K+ M D + +++ K G +P + F A+Y+ L+ + QGPR F
Sbjct: 478 --LLAKLKAMPAGTQDAELIQNEVFEVGKTHGFDPLRAWFQALYEVLLGQSQGPRFGSFA 535
Query: 514 KTIGKER 520
G +R
Sbjct: 536 AIFGIDR 542
>gi|154246326|ref|YP_001417284.1| lysyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
gi|154160411|gb|ABS67627.1| lysyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
Length = 565
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 139/554 (25%), Positives = 220/554 (39%), Gaps = 86/554 (15%)
Query: 10 WADQTAEKII-------RERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRG 62
W + A K++ +ERG +V +G PSG H+G F E+ +V A R
Sbjct: 33 WPFEEARKLVERLKRHPKERGSEEVLF-ETGYGPSGLPHIGTFGEVARTTMVRHAFRVLT 91
Query: 63 KN---VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDV 119
++ R + DD D RKVP N+P ++L+K L P+T VPD F +++ H+ +
Sbjct: 92 EDKVKTRLVAFSDDMDGLRKVPDNVPNKDMLQKALGLPLTKVPDPFGTHDSFGEHNNARL 151
Query: 120 EAVLPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWP 178
A L G E++ + Y G + + K L + E++ ++ L + R+E + P
Sbjct: 152 RAFLDAFGFRYEFMSATDCYMSGRFDATLLKVLHHYEKVMNVMLPSLREERAASYSPFLP 211
Query: 179 ----------VSVFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRV 228
V + T E D + G C KL W+
Sbjct: 212 ICPRTGRVLQVPILEHHVKHGTVTYEDPDTKEKVTVPVTGGGC-----------KLQWKP 260
Query: 229 DWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGK 287
DW MRW +E AGKD S +S ++ + P P F Y+ F+ KG K
Sbjct: 261 DWAMRWVALGVDYEMAGKDLID---SVKLSSQIAKALGGEP-PEGFNYELFLDEKG--QK 314
Query: 288 MASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDY----DKTER 343
++ SKG +S+ + L+ PE + LF P + + FD+ + + +DY K E
Sbjct: 315 ISKSKGNGLSIEDWLKYASPE-SLSLFMFQSPRSGKRLFFDV-IPRNVDDYFGFLGKYEE 372
Query: 344 IAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKG- 402
WK + I+ G P + + F L NL ++ + E+V+ G
Sbjct: 373 QDWKLRLGN------PVWHIHA-----GEPPKVDMPVSFTMLLNLASASNTEDESVLWGF 421
Query: 403 ----LPDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTI 458
+P V +L A + D P + RA + E E A
Sbjct: 422 LNRHVPGVSAETHPKLAELVGYAVKYFHDFVKPNK---VFRA----PDAVEQEALAKLDA 474
Query: 459 RDSLLPKMDEMDEKTFSTALYDAA---------KECGLEPK------QMFVAVYQALVSK 503
+ LP D+ ALYD A K G P+ + F +YQ L+
Sbjct: 475 ALAALPAGATADD--IQNALYDVARPIERYQDLKAKGATPERPGVSIEWFNTLYQVLLGL 532
Query: 504 DQGPRLAGFMKTIG 517
+GPR F++ G
Sbjct: 533 GRGPRFGSFVEIYG 546
>gi|118736767|ref|ZP_01585215.1| lysyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
gi|118673488|gb|EAV80055.1| lysyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
Length = 552
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 131/513 (25%), Positives = 209/513 (40%), Gaps = 45/513 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ +V RA + I DD D FRKVP N+P E L
Sbjct: 41 TGYGPSGLPHIGTFGEVARTTMVRRAFELLSDIPTKLICFSDDMDGFRKVPGNVPMQEEL 100
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
L P+T V D F +A+H+ + L G E+ E Y G + E +
Sbjct: 101 RADLNLPLTKVRDPFGTHAGFAQHNNARLCEFLDSFGFEYEFASATEYYTSGKFDEMLLV 160
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSCECG 209
AL+ +E++ I L T + + P+S T +E T+ Y G
Sbjct: 161 ALERFDEIQKIMLPTLGADRQATYSCFLPISP-KTGHVLQVPTLERNVAKGTIVYEEPDG 219
Query: 210 HCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWP 269
+ + +VK+ W+ DW MRWA +E +GKD S +S + + P
Sbjct: 220 ERVEIPV-TGGNVKMQWKPDWAMRWAALGVDYEMSGKDLID---SVTQSSKICRALGKRP 275
Query: 270 APVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDL 329
P S Y+ + K++ SKG +S+ E L PE +Y F +P T + FD+
Sbjct: 276 -PESLSYELFNDEN-GQKISKSKGNGLSMEEWLTYAAPESLQY-FMYLKPKTAKRLYFDV 332
Query: 330 DVIKIYEDYDKTERIAWKAEKAK---NDETFEKEYRIYELSQIDGMPECISYQIPFRHLC 386
+ K ++Y + R A+ + AK N+ F + + G +S+ + L
Sbjct: 333 -IPKAVDEYHQQLR-AYPGQDAKGQLNNPVFH-----IHGADVPGSDMVVSFAM----LL 381
Query: 387 NLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDG-------GAPEEF 434
NL ++ + + + G P+ L A A + D AP +
Sbjct: 382 NLASVSGAENKDALWGFIRKYAPEATAETHPGLDAAAGFAVRYFNDRIKPTRRFRAPSDQ 441
Query: 435 KFALRADGSKAELSEPETKAIKTIR-------DSLLPKMDEMDEKTFSTALYDAAKECGL 487
+ A AD +KA L +P A R +S + +D ++ + + K G
Sbjct: 442 ERAAMADLAKA-LRDPGLGADMIARKNAAAGQESAVTTLDYGSDEDLQSVCFAIGKLHGF 500
Query: 488 EP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKE 519
+ F A+Y+ L+ +GPR GF G E
Sbjct: 501 ANLRDWFKALYEVLLGASEGPRFGGFAALYGPE 533
>gi|91975480|ref|YP_568139.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
gi|91681936|gb|ABE38238.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
Length = 545
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 125/526 (23%), Positives = 212/526 (40%), Gaps = 82/526 (15%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A R + + + DD D RKVP N+P E
Sbjct: 46 TGYGPSGLPHIGTFGEVARTTMVRHAFRVLTDDKIKTKLLAFSDDMDGLRKVPDNVPNKE 105
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+L ++L +T VPD F ++ H+ + A L G E+ E Y+ G + +
Sbjct: 106 MLAQHLGKSLTSVPDPFGTHSSFGAHNNARLRAFLDTFGFDYEFASATEYYKSGRFDATL 165
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIE------------- 194
+ L +++ I L + R+E + PV C + ++
Sbjct: 166 RTMLQRLDKVMAIMLPSLREERAASYSPFLPV------CPRTGVVLQVPIVDHDVAAGTV 219
Query: 195 SWDGDWT---LKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQ 251
S+D T + GHC KL W+ DW MRW +E AGKD
Sbjct: 220 SYDDPETAERVTVPVTGGHC-----------KLQWKPDWAMRWTALGVDYEMAGKDLID- 267
Query: 252 GGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVA 310
S + ++ I P P F Y+ F+ KG K++ SKG +++ E L PE +
Sbjct: 268 --SVKLSGKIAQAIGGLP-PEGFNYELFLDDKG--QKISKSKGNGLTIDEWLRYASPE-S 321
Query: 311 RYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQID 370
LF P + FD+ + + +DY + + A+ D + ++ +
Sbjct: 322 LALFMYREPKAAKRLYFDV-IPRNVDDYQQ-----FLDGFARQDAKQQLANPVWHIHS-- 373
Query: 371 GMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWI 425
G P I + F+ L L+ ++ + + G P V P +L A N+
Sbjct: 374 GQPPKIDMPVTFQLLLTLVSSSNAENAETLWGFIGRYRPGVTPQTHPKLDAMVGYAINYY 433
Query: 426 TDGGAPEE-FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAA-K 483
D AP + F+ + ++ E A++ +RD+L E + +Y+ +
Sbjct: 434 RDFVAPTKVFR----------DPTDAERAALQDLRDALSQLAPESTAEAIQDVVYEIGRR 483
Query: 484 ECGLEPKQM------------FVAVYQALVSKDQGPRLAGFMKTIG 517
E L+ K+ F +YQ L+ +++GPR F+ G
Sbjct: 484 EPFLDHKKAAKDGKPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYG 529
>gi|113933887|ref|ZP_01419788.1| lysyl-tRNA synthetase [Caulobacter sp. K31]
gi|113731384|gb|EAU12453.1| lysyl-tRNA synthetase [Caulobacter sp. K31]
Length = 552
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 125/515 (24%), Positives = 208/515 (40%), Gaps = 66/515 (12%)
Query: 32 SGITPSGTVHVGNFREIISVDLV---VRALRSRGKNVRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V RAL R I DD D RKVP N+ +
Sbjct: 67 TGYGPSGLPHLGTFGEVARTTMVRNAFRALTDDAIKTRLIAFSDDMDGLRKVPDNIENKQ 126
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
L + L P+T+V D F +++ H+ + A L G E++ + Y+ G++ E +
Sbjct: 127 PLIEDLGKPLTVVRDPFGTHDSFGAHNNARLRAFLDGFGFEYEFVSSTDCYKGGLFDETL 186
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWPVS----------VFCTACNKDTTKIESWD 197
AL + ++ + L T +E + P+S +K T + D
Sbjct: 187 LTALARFDAIQKVMLPTLGEERRASYSPFLPISPSTGKVLQVPTLERDVDKGTIVFQDED 246
Query: 198 GDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
G ++ GH VK+ W+ DW MRW +E +GKD S
Sbjct: 247 GS-KVEVPVTGGH-----------VKMQWKPDWAMRWTALGVDYEMSGKDLID---SVKA 291
Query: 258 ASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPE-VARYLFAG 316
+ + + P P F Y+ L K++ SKG +S+ + L PE ++ Y+F
Sbjct: 292 SGQICKALGGVP-PEGFNYELF-LDENSQKISKSKGNGLSMEDWLRYGAPESLSYYMFQS 349
Query: 317 TRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECI 376
P + + FD+ + K ++Y + K E AK + + ++ + G P
Sbjct: 350 --PKSAKKLYFDV-IPKATDEYLQQLDAYPKQEPAK-----QLDNPVWHVHS--GRPPQY 399
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKG-----LPDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ F + NL+ + + ++ G +P P L A A N+ D P
Sbjct: 400 GSPVSFSLMLNLVSAANASDKEILWGFLSRYIPGATPQSQPLLDRLAGYAINYYEDFVKP 459
Query: 432 EEFKFALRADGSKAELSEPETKAIKTIRDSL-----LPKMDEMDEKTFSTALYDAAKECG 486
+ RA P+ K + D L LP D D + ++ K+ G
Sbjct: 460 SK---VFRA---------PDDKERAAMLDLLGRLKALPS-DCQDAELIQNEVFAVGKDHG 506
Query: 487 LEP-KQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
+P + F A+Y+ L+ + QGPR F G +R
Sbjct: 507 FDPLRAWFQALYEVLLGQSQGPRFGSFAAIFGLDR 541
>gi|27376244|ref|NP_767773.1| lysyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
gi|27349384|dbj|BAC46398.1| lysyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
Length = 547
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 128/540 (23%), Positives = 213/540 (39%), Gaps = 63/540 (11%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A+ I+ ++ D +G PSG H+G F E+ +V A R ++
Sbjct: 23 WPFEQAKAIVARLKKSPKDEVLFETGYGPSGLPHIGTFGEVARTSMVRHAFRVLTEDKIK 82
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAVL 123
R + DD D FRKVP N+P E+L +L P+T VPD F + ++ H+ + A L
Sbjct: 83 TRLLAFSDDMDGFRKVPDNVPNKEMLAAHLGKPLTRVPDPFSNEYPSFGHHNNARLRAFL 142
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPVSVF 182
G E+ + Y G + + K L ++ + IL T + + P+S
Sbjct: 143 DHFGFDYEFASSTDYYTSGRFDATLLKMLAAYDKVMAIILPTLGPDRRATYSPFLPISK- 201
Query: 183 CTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFE 242
T I T+ Y + E +VK W+ DW MRW +E
Sbjct: 202 TTGIVLQVPMIRRDVAAGTVTYVDPDTNQEVETPVTGGNVKCQWKADWAMRWVALGVDYE 261
Query: 243 PAGKDHHSQGGSFDTASLVS--DRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLA 299
AGKD D+ L R P F Y+ F+ +G K++ SKG +++
Sbjct: 262 MAGKD------LIDSVKLSGAIARALGATPPEGFNYELFLDEQG--QKISKSKGNGLTID 313
Query: 300 EVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEK 359
E L PE + LF P + FD+ + + +DY + I A++ +
Sbjct: 314 EWLRYASPE-SLSLFMYREPKAAKRLYFDV-IPRNVDDYQQF--IDGFAKQDGKQQLGNP 369
Query: 360 EYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRL 414
+ I+ +G P + F+ L L+ ++ + + G P V P +L
Sbjct: 370 VWHIH-----NGHPPKGDMPVTFQLLLTLVSSSNAENAETLWGFIGRYRPGVSPKTHPKL 424
Query: 415 RTRAECAWNWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKT 473
A N+ D AP ++F+ +E E A++ +RD+L E +
Sbjct: 425 DAMVGYAINYYRDFVAPTKQFRVP----------TETERAALQDLRDALSQLPQESSAED 474
Query: 474 FSTALYDAAKECGLEP----------------KQMFVAVYQALVSKDQGPRLAGFMKTIG 517
+Y+ + EP F +YQ L+ +++GPR F+ G
Sbjct: 475 IQNVVYEIGRR---EPFLDQVKKGKDGRPGVTLDWFNMLYQVLLGQEKGPRFGSFVAVYG 531
>gi|121602260|ref|YP_989607.1| lysyl-tRNA synthetase [Bartonella bacilliformis KC583]
gi|120614437|gb|ABM45038.1| lysyl-tRNA synthetase [Bartonella bacilliformis KC583]
Length = 553
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 133/549 (24%), Positives = 225/549 (40%), Gaps = 65/549 (11%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A K+I+ + G + +G PSG H+G F E+ +V A ++
Sbjct: 25 WPFEEARKLIKRYEKTGYPETVLFETGYGPSGLPHIGTFGEVARTTMVRHAFHVLTEDKI 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTF-ERDENYARHHEHDVEAV 122
+ I DD D RKVP N+P E + YL P++ VP+ F + ++ + + A
Sbjct: 85 KTKLICFSDDMDGLRKVPENVPDREKMANYLGQPLSRVPNPFGDASPSFGAANNMRLCAF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREE-LKDILNTYRDESHKITEEYWPVSV 181
L R G E+ + Y G + E + K L + +E +K +L T +E + + P+S
Sbjct: 145 LDRFGFDYEFASATDYYSSGRFDEVLLKILASYDEVMKIVLPTLGEERQETYALFLPISP 204
Query: 182 FCTACNKDTTKIESWDGDWTLKY-SCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
+ I+ T+ Y E G ++ K VK W+VDW MRW
Sbjct: 205 VSGKVLQ-VPLIDRNVKKGTVTYIEPETGETVETEVTGGK-VKCQWKVDWAMRWKALGVD 262
Query: 241 FEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
+E AGKD D+ +L S ++ P F Y+ F+ KG K++ SKG ++
Sbjct: 263 YEMAGKD------LIDSVNLSSKICKVLGSNPPEGFNYELFLDEKG--QKISKSKGNGLT 314
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDL---DVIKIYEDYDKTERIAWKAEKAKND 354
+ E L Y P + L+ +P T + FD+ V + Y R WK E+ N
Sbjct: 315 IDEWL-TYAPTESLGLYMFLKPKTAKRLYFDVIPKAVDEYYAHLSAYGRQQWK-ERLNN- 371
Query: 355 ETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPA 409
Y I+ G P + + F L NL+ ++ + E V+ G
Sbjct: 372 ----PVYHIHS-----GCPPQVDMPVSFAMLLNLVSASNAENEDVLWGFISRYSKGTNAQ 422
Query: 410 QVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEM 469
L +CA + P + +F D +A L++ + K LP++ +
Sbjct: 423 TCPALDLLVKCAIKYFDVFVKPNK-QFRAPDDIERAVLAQIDEKLAN------LPEI--V 473
Query: 470 DEKTFSTALYDAAK-------ECGLEPK-------QMFVAVYQALVSKDQGPRLAGFMKT 515
D+ +L D A+ P+ F +Y+ L+ +++GPR F+
Sbjct: 474 DDNALQNSLLDVARLTERYQDHNKKSPEGGPGVSVAFFQMLYEVLLGQERGPRFGSFIAL 533
Query: 516 IGKERLEKI 524
G + + +
Sbjct: 534 YGVDEMRAL 542
>gi|85714008|ref|ZP_01044997.1| lysyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
gi|85699134|gb|EAQ37002.1| lysyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
Length = 543
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 129/546 (23%), Positives = 218/546 (39%), Gaps = 72/546 (13%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A+ I+ ++ D +G PSG H+G F E+ +V A R ++
Sbjct: 20 WPFEQAKAIVARLKKAPKDEVLFETGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDKVK 79
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
R + DD D RKVP N+P ++L + L P+T V D F ++ H+ + A L
Sbjct: 80 TRLLAFSDDMDGLRKVPDNVPNKDLLARDLGKPLTKVADPFGTHPSFGEHNNARLRAFLD 139
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPV---- 179
G E+ Y G + + K L+N +++ I L + R+E + P+
Sbjct: 140 TFGFDYEFASSTAYYTSGRFDATLLKVLENIDKVMAIMLPSLREERAASYSPFLPICPRT 199
Query: 180 ----SVFCTACNKDTTKIESWDGDWTLKYSCEC--GHCEALDLRKAKSVKLGWRVDWPMR 233
V TA + + D + + + GHC KL W+ DW MR
Sbjct: 200 GVVLQVPITAHDAKAGTVSYDDPETKERVTVPVTGGHC-----------KLQWKPDWAMR 248
Query: 234 WAFEKTVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSK 292
W +E AGKD S + + + P P F Y+ F+ KG K++ SK
Sbjct: 249 WTALGVDYEMAGKDLID---SVKLSGKICSALGGTP-PEGFNYELFLDDKG--QKISKSK 302
Query: 293 GKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAK 352
G +++ E L PE + LF P + FD+ + + +DY + + +
Sbjct: 303 GNGLTIDEWLRYASPE-SLSLFMYREPKAAKRLYFDV-IPRNVDDYQQ-----FLEGYPR 355
Query: 353 NDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVK 407
D + ++ + G P + F+ L L+ ++ + + G P V
Sbjct: 356 QDARQQLANPVWHIHA--GHPPAADMPVTFQLLLTLVSSSNAENAETLWGFIGRYRPGVT 413
Query: 408 PAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL--LPK 465
P +L A N+ D AP + + E + E A++ +RD+L LP
Sbjct: 414 PQTHPKLDALVGYAINYYRDFVAPAK---------TFREPTASERAALQDLRDALSQLPA 464
Query: 466 MDEMDEKTFSTALYDAAKECGLEPKQM------------FVAVYQALVSKDQGPRLAGFM 513
D E +T +E L K++ F +YQ L+ +++GPR F+
Sbjct: 465 -DASAEDIQNTVYEIGRREPFLNHKKLAKDGRPGVSLDWFNMLYQVLLGQEKGPRFGSFV 523
Query: 514 KTIGKE 519
G +
Sbjct: 524 AVYGAQ 529
>gi|114704907|ref|ZP_01437815.1| lysyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
gi|114539692|gb|EAU42812.1| lysyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
Length = 546
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 128/547 (23%), Positives = 226/547 (41%), Gaps = 55/547 (10%)
Query: 10 WADQTAEKIIRE---RGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALR--SRGK- 63
W + A K+++ G + +G PSG H+G F E+ +V A + GK
Sbjct: 19 WPFEEARKLLKRFEAEGMPETVLFETGYGPSGLPHIGTFGEVARTTMVRHAFSVLTEGKV 78
Query: 64 NVRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
+ I DD D RKVP N+P E++ ++L P++ +PD F + ++A H+ + +
Sbjct: 79 ATKLICFSDDMDGLRKVPENIPNREMMLQHLGKPLSRIPDPFSNEYPSFAAHNNARLRSF 138
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKD-ILNTYRDESHKITEEYWPVSV 181
L G E+ + Y G + + K L +++ + IL T E + + PV
Sbjct: 139 LDTFGFEYEFASATDYYASGRLDDTLLKMLAVYDDVMEIILPTLGPERRETYSPFLPVHP 198
Query: 182 FCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
T ++ T+ Y + +VK W+ DW +RWA +
Sbjct: 199 -VTGVVLQVPMVDRNVEKGTITYLDPDTREQMETPVTGGAVKCQWKADWALRWAALGVDY 257
Query: 242 EPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLA 299
E AGKD D+ +L S R P P F Y+ L K++ SKG +++
Sbjct: 258 EMAGKD------LIDSVNLSSKICRALGCPPPEGFNYELF-LDDGGQKISKSKGNGLTID 310
Query: 300 EVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFE 358
E L P+ ++ Y+F +P + FD+ + K +DY + A++ ++ K +
Sbjct: 311 EWLTYASPKSLSFYMF--NKPKAAKKLYFDV-IPKAVDDYYQFVS-AYQRQEPKQ----Q 362
Query: 359 KEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDR 413
+ ++ + G P ++PF L NL+ ++ + G P V PA
Sbjct: 363 LQNPVWHIHS--GNPPTEGIKVPFAMLLNLVSASNASNAETLWGFISRYYPGVTPASDPE 420
Query: 414 LRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETK--------AIKTIRDSLLPK 465
L A + D P + +F + L + ++K TI+++LL
Sbjct: 421 LDQIVSYAIRYYDDFVKPTK-RFRAPDAVERDALQKFDSKLADLPADADAATIQNALLDV 479
Query: 466 MDEMDEKTFSTALYDAAKECGLE-----PKQMFVAVYQALVSKDQGPRLAGFMKTIGKER 520
++ Y AK+ G + + F A+YQ L+ +++GPR F+ G
Sbjct: 480 ARPIER-------YQDAKKTGPDGGPGVSGEWFQALYQVLLGQEKGPRFGSFIALYGIAE 532
Query: 521 LEKIFKD 527
K+ D
Sbjct: 533 TRKMIAD 539
>gi|146343513|ref|YP_001208561.1| lysyl tRNA synthetase ( Lysine--tRNA ligase) [Bradyrhizobium sp.
ORS278]
gi|146196319|emb|CAL80346.1| lysyl tRNA synthetase ( Lysine--tRNA ligase) [Bradyrhizobium sp.
ORS278]
Length = 548
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 131/550 (23%), Positives = 217/550 (39%), Gaps = 83/550 (15%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A+ I+ ++ D +G PSG H+G F E+ +V A R ++
Sbjct: 24 WPFEQAKAIVNRLKKAPKDEVLFETGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDKIK 83
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAVL 123
R I DD D RKVP N+P E+L +L P++ VPD F + ++A H+ + A L
Sbjct: 84 TRLIAFSDDMDGLRKVPDNVPNKEMLASHLGKPLSRVPDPFSNEYPSFAAHNNARLRAFL 143
Query: 124 PRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVS-- 180
G E+ E Y G + + + L+ E++ I L + R+E + P+
Sbjct: 144 DTFGFDYEFASSTEYYTSGKFDAALLRMLERLEKVMAIMLPSLREERAASYSPFLPICPR 203
Query: 181 ----VFCTACNKD----TTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPM 232
++ D T + + + GHC KL W+ DW M
Sbjct: 204 TGLVLYVPIVEHDAKAGTISYDDPETKERMTVPVTGGHC-----------KLQWKPDWAM 252
Query: 233 RWAFEKTVFEPAGKDHHSQGGSFDTASLVSDRI---YNWPAPVSFRYD-FIGLKGVPGKM 288
RW +E AGKD D+ L S +I P F Y+ F+ KG K+
Sbjct: 253 RWFALGVDYEMAGKD------LIDSVKL-SGKICAALGGTPPEGFNYELFLDEKG--QKI 303
Query: 289 ASSKGKVVSLAEVLEVYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKA 348
+ SKG +++ E L PE + LF P + FD+ + + +DY + +
Sbjct: 304 SKSKGNGLTIDEWLRYASPE-SLSLFMYREPKAAKRLYFDV-IPRNVDDYQQFLE-GFPR 360
Query: 349 EKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL----- 403
+ AK + + I+ G P + F+ L L+ ++ + + G
Sbjct: 361 QDAKQ-QLGNPVWHIHS-----GKPPKADMPVTFQLLLTLVSSSNAENAETLWGFIGRYR 414
Query: 404 PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLL 463
P V P +L A N+ D AP + + E +E E A++ +RD+L
Sbjct: 415 PGVTPQTHPKLDAMVGYAINYYRDFVAPTK---------TFREPTEGERVALQDLRDALS 465
Query: 464 PKMDEMDEKTFSTALYDAAKECGLEP----------------KQMFVAVYQALVSKDQGP 507
E + +Y+ + EP F +YQ L+ +++GP
Sbjct: 466 NLPAEAAAEDIQNVVYEIGRR---EPFLDHVKKGKDGRPGVSLDWFNMLYQVLLGQEKGP 522
Query: 508 RLAGFMKTIG 517
R F+ G
Sbjct: 523 RFGSFVAVYG 532
>gi|114328838|ref|YP_745995.1| class 1 lysyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
gi|114317012|gb|ABI63072.1| class 1 lysyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
Length = 538
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 125/498 (25%), Positives = 205/498 (41%), Gaps = 41/498 (8%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRS-RGKNVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ V A G R + DD D RKVP N+P E+L
Sbjct: 50 TGYGPSGLPHIGTFGEVARTSWVRNAFTELTGLPSRLLAFSDDMDGLRKVPDNVPNKEML 109
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+++ P+T VPD F +++ H+ + + L G E+ E Y+ G + +++
Sbjct: 110 AEFIGRPLTSVPDPFGTHDSFGAHNNARLRSFLDGFGFSYEFASSTEYYRSGRFDVALRR 169
Query: 151 ALDNREELKD-ILNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGD-WTLKYSCEC 208
L+ +E+ IL T E + P+ + IE D + T+ + E
Sbjct: 170 LLEVYDEVTAVILPTLGPERRATYSPFLPLHPETGIVMQ--VPIEHRDVEAGTIVWRDEN 227
Query: 209 GHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDTASLVSD--RIY 266
G + + KL W+ DW MRW +E +GKD D+ L S I
Sbjct: 228 GKRFETPV-TGGAAKLQWKADWAMRWYALGVDYEMSGKD------LIDSVRLSSRICSIL 280
Query: 267 NWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPE-VARYLFAGTRPNTEFVI 325
PV+ Y+ L K++ SKG +S+ E L PE +A+Y++ P +
Sbjct: 281 GGQPPVTLTYELF-LDEHGQKISKSKGNGLSVEEWLRYAPPESLAQYMYNA--PQRAKRL 337
Query: 326 SFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECISYQIPFRHL 385
F DVI D E +A + A DE K + ++ +P+ S + F L
Sbjct: 338 YF--DVIPRAAD----EYLAHADKAATQDEAALKTNPSWHIAGRQ-VPDQRS-PLSFAML 389
Query: 386 CNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRA 440
NL + + + ++ G P P L A+ A + D P++
Sbjct: 390 LNLASVVNAENADILWGFIRRYCPGATPENQPFLARLADHAVMYYRDFVLPQK------- 442
Query: 441 DGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAAKECGL-EPKQMFVAVYQA 499
+ + +E E A+ +RD L + E A+++ K E + F +YQ
Sbjct: 443 --NYRDPTETERAALVDLRDVLRAMEPDASETVLQNAVFEVGKRHEFAELRAWFGCLYQV 500
Query: 500 LVSKDQGPRLAGFMKTIG 517
L+ + +GPR F+ G
Sbjct: 501 LLGQVEGPRFGNFVAVYG 518
>gi|118589335|ref|ZP_01546741.1| lysyl-tRNA synthetase [Stappia aggregata IAM 12614]
gi|118438035|gb|EAV44670.1| lysyl-tRNA synthetase [Stappia aggregata IAM 12614]
Length = 551
Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 136/544 (25%), Positives = 231/544 (42%), Gaps = 71/544 (13%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A K+++ ++G +G PSG H+G F E++ +V A R ++
Sbjct: 25 WPFEEARKLVKRIEKKGSDKPVLFETGYGPSGLPHIGTFGEVLRTTMVRTAFRLLTEDKI 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
R + DD D RK+P N+P LE YL+ P+T VP+ F D +++A H+ +
Sbjct: 85 PTRLLCFSDDMDGMRKIPENVPDRAALEPYLQMPLTAVPNPFGGDFDSFAAHNNAMLRRF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDILNTYRDESHKITEEYWPVSVF 182
L G E+ E Y+ G + + + +RE +D RD + E ++V
Sbjct: 145 LDTFGFDYEFASATEYYKAGKFDDVLIPG--DREVPED---HGRDAATLGAERQATIAVL 199
Query: 183 -CTACNKDTTKIESWD---GDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEK 238
+ + + D D T+ ++ E G + + K VKL W+ D+ MRWA
Sbjct: 200 PISPTSGRVLYVPMKDVNPKDGTITFADETGEEITVPVTGGK-VKLQWKPDFGMRWAALD 258
Query: 239 TVFEPAGKDHHSQGGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
FE GKDH + +D I AP F Y+ F+ KG K++ SKG ++
Sbjct: 259 VDFEMFGKDHMTNAPIYDKIC----NILGGTAPEHFVYELFLDEKG--EKISKSKGNGLT 312
Query: 298 LAEVLEVYQPE-VARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDET 356
+ E L PE +A Y F +P T + FD+ I + D+ K E+ ++
Sbjct: 313 IDEWLTYAAPESLALYNF--QKPKTAKKLYFDV----IPKAVDEYYTFVQKYEQMPVEQK 366
Query: 357 FEK-EYRIYE--LSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVI-----KGLPDVKP 408
+ + I+ + +ID MP +PF L NL+ ++ + + V+ + P V
Sbjct: 367 LQNPAWHIHSGNIPKID-MP------VPFAMLLNLVSASNAENKDVLWAFISRYAPGVTA 419
Query: 409 AQVDRLRTRAECAWNWITDGGAP-EEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMD 467
+ L A + D P + FK + E A++ + ++L
Sbjct: 420 STHPELDALVGYAIRYFDDFVKPAKSFKVP----------DDVERTALEKLDETLAALPA 469
Query: 468 EMDEKTFSTALYDAAK--ECGLEPKQM------------FVAVYQALVSKDQGPRLAGFM 513
+ D A+ D A+ E +P + F A+YQ L+ +++GPR F+
Sbjct: 470 DADGAAIQDAVLDVARSIERYQDPSKKGPDGGPGVSVAWFSALYQLLLGQEKGPRFGSFV 529
Query: 514 KTIG 517
G
Sbjct: 530 ALYG 533
>gi|90418700|ref|ZP_01226611.1| lysyl-tRNA synthetase [Aurantimonas sp. SI85-9A1]
gi|90336780|gb|EAS50485.1| lysyl-tRNA synthetase [Aurantimonas sp. SI85-9A1]
Length = 554
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 126/532 (23%), Positives = 210/532 (39%), Gaps = 72/532 (13%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRA---LRSRGKNVRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A L R + DD D RKVP N+P E
Sbjct: 49 TGYGPSGLPHIGTFGEVARTSMVRHAFTVLTDGAVPTRLLCFSDDMDGLRKVPDNVPNRE 108
Query: 89 VLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEG 147
+L ++ P++ VPD F D ++A H+ + A L R G E+ + Y G +
Sbjct: 109 MLATHIGKPLSRVPDPFSDDYPSFAAHNNARLRAFLDRFGFDYEFASATDYYASGRFDAT 168
Query: 148 MKKALDNREELKD-ILNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSC 206
+ K L +E++ IL T E + P+ + T + T++
Sbjct: 169 LLKMLAVYDEVRAIILPTLGAERQATYSPFLPI-------HPRTGMVLQVP---TVERDV 218
Query: 207 ECGHCEALDLRKAK---------SVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
E G LD + +VK W+ DW MRWA +E AGKD D+
Sbjct: 219 ERGMIAYLDPETGERIETTVTGGAVKCQWKADWAMRWAALGVDYEMAGKD------LIDS 272
Query: 258 ASLVSD--RIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQPE-VARYLF 314
+L S R P F Y+ L K++ SKG +++ E L P+ +A Y+F
Sbjct: 273 VTLSSKICRALGSAPPEGFNYELF-LDQSGQKISKSKGNGLTIDEWLSYASPQSLAFYMF 331
Query: 315 AGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPE 374
+P + FD+ + K +DY + ++ + + + I+ +G P
Sbjct: 332 G--KPRAAKRLFFDV-IPKAVDDY--YQFVSAYQRQELRQQLQNPVWHIH-----NGTPP 381
Query: 375 CISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGG 429
+PF L NL+ ++ + + G P V L A + D
Sbjct: 382 AKGVPVPFAMLINLVSASNASNASTLWGFITRYAPGVTAETDPELDQLVGYALRYYEDFV 441
Query: 430 APEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAA------- 482
P + RA + E +A++++ + + D + +L D A
Sbjct: 442 RPAK---TFRAPDAV------EREALESLDAAFASLPADADGEAIQNSLLDVARPIERYQ 492
Query: 483 --KECGLE-----PKQMFVAVYQALVSKDQGPRLAGFMKTIGKERLEKIFKD 527
K+ G + + F A+YQ L+ +++GPR F G + +D
Sbjct: 493 DHKKSGPQGGPGVSGEWFQALYQILIGQEKGPRFGSFAALYGLAETRALIRD 544
>gi|49473707|ref|YP_031749.1| lysyl-tRNA synthetase [Bartonella quintana str. Toulouse]
gi|49239210|emb|CAF25529.1| Lysyl-tRNA synthetase [Bartonella quintana str. Toulouse]
Length = 553
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 132/545 (24%), Positives = 226/545 (41%), Gaps = 71/545 (13%)
Query: 10 WADQTAEKIIR---ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A KII+ + G + +G PSG H+G F E+ +V A +N
Sbjct: 25 WPFEEARKIIKRYEKTGYPESIIFETGYGPSGLPHIGTFGEVARTTMVRHAFHILTENKV 84
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTF-ERDENYARHHEHDVEAV 122
+ I DD D RK+P N+P E + YL ++ VP+ F + ++ + + A
Sbjct: 85 KTKLICFSDDMDGLRKIPDNVPDREKMASYLDQSLSRVPNPFGDIYPSFGAANNARLCAF 144
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSV 181
L R G E+ + Y G + E + K L +++ I L T ++ + P+S
Sbjct: 145 LDRFGFDYEFASATDYYNSGRFDETLLKILACYDKIMAIVLPTLGEKRQATYSLFLPISP 204
Query: 182 FCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVF 241
F + + + E G ++ + VK W+VDW MRW+ +
Sbjct: 205 FSGKVLQVPMIARNVEKGTVTYIEPETGETIETEITGGR-VKCQWKVDWAMRWSALGVDY 263
Query: 242 EPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSL 298
E AGKD D+ +L S ++ P F Y+ F+ KG K++ SKG +++
Sbjct: 264 EMAGKD------LIDSTNLSSKICKVLGGKPPEGFNYELFLDDKG--QKISKSKGNGLTI 315
Query: 299 AEVLEVYQPEVARYLFAGTRPNTEFVISFDL---DVIKIYEDYDKTERIAWKAEKAKNDE 355
E L Y P + L+ +P T + FD+ V + Y +R W+ E+ N
Sbjct: 316 DEWL-TYAPTESLGLYMFLKPKTAKRLCFDVIPKAVDEYYAHLSAYDRQKWQ-ERLNN-- 371
Query: 356 TFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL---------PDV 406
+ I+ +G P + + F L NL+ ++ + + V+ G
Sbjct: 372 ---PVWHIH-----NGCPPQVDLPVSFAMLLNLVSASNAENKEVLWGFISRHAKGANAQT 423
Query: 407 KPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSLLPKM 466
PA +D+L + A + P + KF + ++ L++ +TK LP+
Sbjct: 424 YPA-LDQL---VQFAIKYFDVFVKPNK-KFRIPDKSERSTLAQIDTKLAN------LPET 472
Query: 467 DEMDEKTFSTALYDAAK-------------ECGLEPKQMFVA-VYQALVSKDQGPRLAGF 512
+ D TF AL D A+ E G +F +Y+ L+ +++GPRL F
Sbjct: 473 ADGD--TFQNALLDVARLTERYQDHNKKSPEGGPGVSNVFFQMLYEVLLGQERGPRLGSF 530
Query: 513 MKTIG 517
+ G
Sbjct: 531 IALYG 535
>gi|149123533|ref|ZP_01849191.1| Lysine--tRNA ligase [Methylobacterium sp. 4-46]
gi|148519290|gb|EDK92325.1| Lysine--tRNA ligase [Methylobacterium sp. 4-46]
Length = 611
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 89/332 (26%), Positives = 138/332 (41%), Gaps = 25/332 (7%)
Query: 10 WADQTAEKIIR--ERGDLDVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN--- 64
W + A K++ ER +G PSG H+G F E+ +V A R ++
Sbjct: 65 WPFEEARKLVARLERNPKAELLFETGYGPSGLPHIGTFGEVARTSMVRHAFRLLTRDAVP 124
Query: 65 VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLP 124
R I DD D RKVP N+P +L + L P+T VPD F +++ H+ ++ L
Sbjct: 125 TRLIAFSDDMDGLRKVPDNVPNRALLAESLNKPLTAVPDPFGTHDSFGAHNNAELRRFLD 184
Query: 125 RVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI----LNTYRDESHKITEEYWPVS 180
G E+L E Y+ G++ + + L+ + + + L R S+ PV+
Sbjct: 185 SFGFDYEFLSATECYRAGVFDAALLRVLERYDAVMAVMLPSLRAERSASYSPFLPLHPVT 244
Query: 181 VFCTACNKDTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
D K+ + W + E KL W+ DW MRW
Sbjct: 245 GHVMQVPIDEVKVAAGTIVWRDPATGERYETPV----TGGHAKLQWKPDWAMRWVALGVD 300
Query: 241 FEPAGKDHHSQGGSFDTASLVSD--RIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVS 297
+E AGKD D+ L S R+ P F Y+ F+ KG K++ SKG ++
Sbjct: 301 YEMAGKD------LIDSVKLSSQIARVLGGEPPEGFNYELFLDEKG--QKISKSKGNGLT 352
Query: 298 LAEVLEVYQPEVARYLFAGTRPNTEFVISFDL 329
+ E L PE + LF +P + FD+
Sbjct: 353 IDEWLAYGTPE-SLALFMYNKPREAKRLHFDV 383
>gi|86748014|ref|YP_484510.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
gi|86571042|gb|ABD05599.1| lysyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
Length = 545
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 127/532 (23%), Positives = 214/532 (40%), Gaps = 94/532 (17%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A R + + + DD D RKVP N+P E
Sbjct: 46 TGYGPSGLPHIGTFGEVARTTMVRHAFRVLTDDKIKTKLLAFSDDMDGLRKVPDNVPNKE 105
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+L ++L +T VPD F E++ H+ + A L G E+ + Y+ G + +
Sbjct: 106 MLAQHLGKSLTSVPDPFGTHESFGAHNNARLRAFLDTFGFDYEFASATDYYKSGRFDATL 165
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIE------------- 194
K L +++ I L + R+E + PV C + ++
Sbjct: 166 LKVLQRLDKVMAIMLPSLREERAASYSPFLPV------CPRTGVVLQVPIVDHDVAAGTV 219
Query: 195 SWDGDWT---LKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQ 251
S+D T + GHC KL W+ DW MRW +E AGKD
Sbjct: 220 SYDDPETKERVTLPVTGGHC-----------KLQWKPDWAMRWTALGVDYEMAGKDLID- 267
Query: 252 GGSFDTASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVA 310
S + ++ I P P F Y+ F+ KG K++ SKG +++ E L PE +
Sbjct: 268 --SVKLSGKIAQAIGGTP-PEGFNYELFLDDKG--QKISKSKGNGLTIDEWLRYASPE-S 321
Query: 311 RYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERI--AWKAEKAKNDETFEKEYRIYELSQ 368
LF P + FD+ I + D+ ++ + + AK + + I+
Sbjct: 322 LSLFMYREPKAAKRLYFDV----IPRNVDEYQQFLDGFGRQDAKQ-QLANPVWHIHS--- 373
Query: 369 IDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWN 423
G P + F+ L L+ ++ + + G P V P +L A N
Sbjct: 374 --GNPPKSDMPVTFQLLLTLVSSSNAENAETLWGFIGRYRPGVTPQTHPKLDAMVGYAIN 431
Query: 424 WITDGGAPEE-FKFALRADGSKAELSEPETKAIKTIRDSLLPKMDEMDEKTFSTALYDAA 482
+ D AP + F+ + ++ E A++ +RD+L ++ + + A+ D
Sbjct: 432 YYRDFVAPTKVFR----------DPTDQERAALQDLRDAL----SQLAPDSTAEAIQDVV 477
Query: 483 KECG-----LEPKQM------------FVAVYQALVSKDQGPRLAGFMKTIG 517
E G L+ K+ F +YQ L+ +++GPR F+ G
Sbjct: 478 YEIGRREPFLDHKKAAKDGKPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYG 529
>gi|13474689|ref|NP_106258.1| lysyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
gi|27805745|sp|Q98BC8|SYK_RHILO Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
gi|14025444|dbj|BAB52044.1| lysyl tRNA synthetase [Mesorhizobium loti MAFF303099]
Length = 548
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 140/548 (25%), Positives = 226/548 (41%), Gaps = 79/548 (14%)
Query: 10 WADQTAEKII-RERGDL--DVYTCASGITPSGTVHVGNFREIISVDLVVRALRSRGKN-- 64
W + A+KII R +G + +G PSG H+G F E+ +V A R ++
Sbjct: 23 WPFEEAKKIIERYKGGEFPETILFETGYGPSGLPHIGTFGEVARTSMVRHAFRVLTQDKV 82
Query: 65 -VRFIYSWDDYDVFRKVPANMPKPEVLEKYLRYPITMVPDTFERD-ENYARHHEHDVEAV 122
+ + DD D RK+P N+P LE +L P++ VP+ F D ++A H+ +
Sbjct: 83 ATKLLCFSDDMDGMRKIPDNVPDRAALEPHLHKPLSSVPNPFGGDYASFADHNNAMLCRF 142
Query: 123 LPRVGIHPEYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSV 181
L G E+ + Y+ G + + +A + +++ + L T E + P+S
Sbjct: 143 LDTFGFDYEFASATQYYKSGRFDAMLLRAAERYDKIMAVMLPTLGPERQATYSPFLPISP 202
Query: 182 FCTACNKDTTK-IESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTV 240
K +++ G T+ + E G L + + VKL W+ D+ MRWA
Sbjct: 203 KSGRVLYVPMKHVDAKAG--TITFDDE-GTETTLSITGGR-VKLQWKPDFGMRWAALGVD 258
Query: 241 FEPAGKDHHSQGGSFDTASLVSDRIYN---WPAPVSFRYD-FIGLKGVPGKMASSKGKVV 296
FE GKDH T ++V DRI N AP F Y+ F+ G K++ SKG +
Sbjct: 259 FEMFGKDHQ-------TNAVVYDRICNILGGRAPEHFVYELFLDENG--QKISKSKGNGL 309
Query: 297 SLAEVLEVYQPEVARYLFAGTRPNTEFVISFDL---DVIKIYEDYDKTERIAWKAEKAKN 353
++ E L Y P + L+ RP + FD+ V + Y R WK E+ N
Sbjct: 310 TIDEWL-TYAPTESLGLYMYQRPRQAKKLYFDVIPRAVDEYYTFLGAYPRQDWK-ERLGN 367
Query: 354 DETFEKEYRIYELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL---------P 404
++ + DG P I +PF L NL+ ++ + V+ G P
Sbjct: 368 P--------VWHMH--DGNPPAIDMPVPFSLLLNLVSASNAQNKDVLWGFISRHTQGVTP 417
Query: 405 DVKPAQVDRLRTRAECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL-- 462
P ++D+L G A F +R + E E +A++ + +L
Sbjct: 418 KTHP-ELDQLV------------GHAIRYFDDFVRPTKTFRAADEVEREALEALDAALGA 464
Query: 463 LPKMDEMDEKTFSTALYDAAK------ECGLEPK-------QMFVAVYQALVSKDQGPRL 509
LP D E + +L A K P+ F +YQ L+ +++GPR
Sbjct: 465 LPA-DAGGEAIQNASLNVARKIERYQDHSKQSPEGGPGVSGAFFQMIYQVLIGQERGPRF 523
Query: 510 AGFMKTIG 517
F G
Sbjct: 524 GSFAALYG 531
>gi|75674350|ref|YP_316771.1| lysyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
gi|74419220|gb|ABA03419.1| lysyl-tRNA synthetase class 1c [Nitrobacter winogradskyi Nb-255]
Length = 543
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 122/520 (23%), Positives = 202/520 (38%), Gaps = 70/520 (13%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKN---VRFIYSWDDYDVFRKVPANMPKPE 88
+G PSG H+G F E+ +V A R ++ R + DD D RKVP N+P E
Sbjct: 44 TGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDKIKTRLLAFSDDMDGLRKVPDNVPNKE 103
Query: 89 VLEKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGM 148
+L + L P+T V D F ++ H+ + A L G E+ Y G + +
Sbjct: 104 LLARDLGKPLTKVVDPFGTHSSFGEHNNARLRAFLDTFGFDYEFASSTAYYTSGRFDVTL 163
Query: 149 KKALDNREELKDI-LNTYRDESHKITEEYWP----------VSVFCTACNKDTTKIESWD 197
K L+N +++ I L + R+E + P V + T + +
Sbjct: 164 LKVLENIDKVMAIMLPSLREERAASYSPFLPICPRTGVVLQVPISAHDAKAGTVSYDDPE 223
Query: 198 GDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKDHHSQGGSFDT 257
+ G C KL W+ DW MRW +E AGKD S
Sbjct: 224 TKERVTVPVTGGRC-----------KLQWKPDWAMRWTALGVDYEMAGKDLID---SVKL 269
Query: 258 ASLVSDRIYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLEVYQPEVARYLFAG 316
+ + + P P F Y+ F+ KG K++ SKG +++ E L PE + LF
Sbjct: 270 SGKICSALGGTP-PEGFNYELFLDDKG--QKISKSKGNGLTIDEWLRYASPE-SLSLFMY 325
Query: 317 TRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRIYELSQIDGMPECI 376
P + FD+ + + +DY + + + D + ++ + G P
Sbjct: 326 REPKAAKRLYFDV-IPRNVDDYQQ-----FLEGYPRQDARQQLANPVWHIHA--GHPPSA 377
Query: 377 SYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRAECAWNWITDGGAP 431
+ F+ L L+ ++ + + G P V P +L A N+ D AP
Sbjct: 378 DMPVTFQLLLTLVSSSNAENAETLWGFIGRYRPGVTPQTHPKLDALVGYAINYYRDFVAP 437
Query: 432 EEFKFALRADGSKAELSEPETKAIKTIRDSL--LPKMDEMDEKTFSTALYDAAKECGLEP 489
+ + E + E A++ +R++L LP D E +T +E L
Sbjct: 438 TK---------TFREPTASERAALQDLREALSQLPA-DASAEDIQNTVYEIGRREPFLNH 487
Query: 490 KQ------------MFVAVYQALVSKDQGPRLAGFMKTIG 517
K+ F +YQ L+ +++GPR F+ G
Sbjct: 488 KKPARDGRPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYG 527
>gi|84519328|ref|ZP_01006669.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
gi|84512119|gb|EAQ08465.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
Length = 320
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 4/218 (1%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGK-NVRFIYSWDDYDVFRKVPANMPKPEVL 90
+G PSG H+G F E+ +V RA + I DD D FRKVP+N+P E L
Sbjct: 67 TGYGPSGLPHIGTFGEVARTTMVRRAFEQISDIPTKLICFSDDMDGFRKVPSNLPNQEGL 126
Query: 91 EKYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKK 150
+ L P+T V D F E +A+H+ + A L G E+ + Y+ G + E +
Sbjct: 127 AEDLHLPLTQVRDPFGTHEGFAQHNNARLCAFLDSFGFEYEFASATDYYKSGKFDEMLLT 186
Query: 151 ALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNKDTTKIESWDGDWTLKYSCECG 209
AL +++++I L T E + PVS T +E T+ Y G
Sbjct: 187 ALARFDKIQEIMLPTLGAERQATYSCFLPVSP-KTGHVLQVPTLERNVEKGTIVYQEPDG 245
Query: 210 HCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKD 247
+ + +VK+ W+ DW MRWA + +E +GKD
Sbjct: 246 EKVEIPV-TGGNVKMQWKPDWAMRWAALEVDYEMSGKD 282
>gi|37527783|ref|NP_931128.1| hypothetical protein plu3928 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787219|emb|CAE16300.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 968
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 86/321 (26%), Positives = 140/321 (43%), Gaps = 30/321 (9%)
Query: 32 SGITPSGTVHVGNFREIISVDLVVRALRSRGKNVRFIYSWDDYDVFRKVPANMPKPEVLE 91
+G P+G H+G EI+ +L+ L G+ V F DD D FRKVP N+P E L
Sbjct: 25 AGFGPTGLPHIGTLCEILRANLIKTELEKAGRTVNFYLISDDLDPFRKVPLNIPNAEQLT 84
Query: 92 KYLRYPITMVPDTFERDENYARHHEHDVEAVLPRVGIHPEYLYQAERYQKGMYAEGMKKA 151
YL PI+ VPD F +++ E+ + + I + + + YQ G Y + +K
Sbjct: 85 PYLGQPISKVPDPFGNFTSFSEMAEYQLMKLATEYEIECQLVRNSLAYQNGDYNDEIKLF 144
Query: 152 LDN----REELKDILNTYRDESHK----ITEEYWPV--SVFCTACNKDTTKIESW-DGDW 200
L N + K+ + R ++ I+E V + T N + +I + GD
Sbjct: 145 LQNFLVLNQICKESTGSLRQRTYSMIMPISERTGAVLEHIIVTDVNPASGEITYYIPGDE 204
Query: 201 TL-----KYSCECGHC---EALDLRKAKSV-----KLGWRVDWPMRWAFEKTVFEPAGKD 247
+ +Y E E LD + SV KL W+ DW MR FE G+D
Sbjct: 205 VINKPGYEYGVEIREFYKNEILDQEQTISVLNGKSKLQWKADWGMRLLARNIHFEMHGED 264
Query: 248 HHSQGGSFDTASLVSDRIYNWPAPVSFRYDFIGLKGVPGKMASSKGKVVSLAEVLEVYQP 307
+ S D A ++ + + P P ++Y L K++ SKG SL ++ +
Sbjct: 265 LLA---SADVARQIAGAL-DRPIPRFYKYGLF-LDDSGKKISKSKGNSFSLDDIRHLLTR 319
Query: 308 EVAR-YLFAGTRPNTEFVISF 327
+ R YL + +++F ++
Sbjct: 320 DAIRTYLSKEPQRSSKFYVAL 340
>gi|58696696|ref|ZP_00372245.1| lysyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
simulans]
gi|58537121|gb|EAL60233.1| lysyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
simulans]
Length = 401
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 92/405 (22%), Positives = 166/405 (40%), Gaps = 54/405 (13%)
Query: 131 EYLYQAERYQKGMYAEGMKKALDNREELKDI-LNTYRDESHKITEEYWPVSVFCTACNK- 188
E+ E Y+ G+Y E + L N +++ D+ L ++R+E + + P+ C ++
Sbjct: 17 EFRSATECYKSGVYDEKLLLLLKNYDKVMDVMLPSFREERQQTYSPFLPI---CPKTSQV 73
Query: 189 -DTTKIESWDGDWTLKYSCECGHCEALDLRKAKSVKLGWRVDWPMRWAFEKTVFEPAGKD 247
IE+ T+ Y G + + K K KL W+ DW MRWA +E GKD
Sbjct: 74 LQVPVIETNTEKGTITYEDPNGGKIEVPVTKGK-CKLQWKPDWGMRWAAFGVNYEAHGKD 132
Query: 248 HHSQGGSFDTASLVSDR---IYNWPAPVSFRYD-FIGLKGVPGKMASSKGKVVSLAEVLE 303
++++S + I P+ F Y+ F+ +G K++ SKG +S+ E L
Sbjct: 133 -------LTPSAVLSSQICEILGEKPPLLFCYELFLDKEG--KKISKSKGNGISIEEWL- 182
Query: 304 VYQPEVARYLFAGTRPNTEFVISFDLDVIKIYEDYDKTERIAWKAEKAKNDETFEKEYRI 363
Y P + L+ P + FD+ I + D+ + + K + + I
Sbjct: 183 TYAPTESLALYIFQSPKKAKRLYFDV----IPKSTDEYLEFVKRYHENKEKDINNPAWHI 238
Query: 364 YELSQIDGMPECISYQIPFRHLCNLLQINSGDIEAVIKGL-----PDVKPAQVDRLRTRA 418
++ +P + I F L NL + + + ++ G P+V P L +
Sbjct: 239 HQ----GNVPSIETSGINFSLLLNLAAACNAENKEILWGFISSYAPNVTPENNKMLDRLS 294
Query: 419 ECAWNWITDGGAPEEFKFALRADGSKAELSEPETKAIKTIRDSL-----LPKMDEMDEKT 473
+ A + D P + S +E E A+ ++D+L +E+ +
Sbjct: 295 DFAVKYYHDFIKPTK---------SYKTPNEKEKAALLDLKDTLHSLSTTATAEEIQSQV 345
Query: 474 FSTA-LYDAAKECGLEPKQMFVAVYQALVSKDQGPRLAGFMKTIG 517
FS YD + F +Y+ L+ + GPR+ F+K G
Sbjct: 346 FSIGKKYDYTN-----LRDWFQLLYETLLGQKTGPRMGSFIKLYG 385
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,035,541,748
Number of Sequences: 5470121
Number of extensions: 89347192
Number of successful extensions: 214555
Number of sequences better than 1.0e-05: 175
Number of HSP's better than 0.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 213725
Number of HSP's gapped (non-prelim): 219
length of query: 528
length of database: 1,894,087,724
effective HSP length: 138
effective length of query: 390
effective length of database: 1,139,211,026
effective search space: 444292300140
effective search space used: 444292300140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)