Newsletter 83
November 22, 2004


The NIH X-Ray Diffraction Interest Group

Newsletter web site: http://mcl1.ncifcrf.gov/nihxray

Calls for WALS Nominations

As you may know from the DDIR's Web board and a recent NIH-Staff list announcement, it's time again to submit nominations for the Wednesday Afternoon Lectures, NIH's premier lecture series.

We are very pleased this year to have a system for submitting nominations online, thanks to a nifty system created by the web and database developers at CIT.  Submit your nomination at: http://fmp.cit.nih.gov/wals/wals1.html

We are perfecting the nomination form and paperless automation as we go, so we especially appreciate your participating this year, both for your nomination, and for your helping us perfect the automated nomination procedure. We've already made a few upgrades based on the 14 nominations that have come in so far.

Our guidelines for submitting WALS nominations are as always: We are looking for outstanding, articulate, active investigators who have an interesting research "story" to tell that will fascinate a broad spectrum of  scientists at NIH. We especially like to see new faces and role models who add to the diversity of the speakers in the series -- which has now celebrated a decade of life.  The online form indicates what information is needed. Nominating paragraphs should be very succinct and persuasive. Do not include more than one reference. You may include a website. For full consideration--including for the most prestigious Director's Lectures (Pittman, Dyer, Mider, Cultural, Astute Clinician, and Director's -- description of these lectures is on the website)
The Deadline for nominations is December 10 for full consideration.
http://fmp.cit.nih.gov/wals/wals1.html

This year's Lectures Subcommittee of the Scientific Directors will be led by Robert Wenthold of NIDCD. Serving with him on the committee will be Robert Angerer, Eric Green, and a scientist to be named. (There is no rule against lobbying your Scientific Interest Group, Fellows' Committee representative, Scientific Director or one of these committee members on behalf of your nominee!) Nominators and their interest groups will be involved in hosting the special visitors selected to speak in the Wednesday Afternoon Lectures. We will be asking the IGs to review and rank nominations after the Director's Lecturers are selected. So go for it! Help us bring the most exciting science to NIH! Make your contribution to NIH's 10-year-old Wednesday tradition!
 

Item 1: October 2004 Publications by Members:

 

1:  Swaminathan CP, Wais N, Vyas VV, Velikovsky CA, Moretta A, Moretta L, Biassoni R, Mariuzza RA, Dimasi N.
Entropically Assisted Carbohydrate Recognition by a Natural Killer Cell-Surface Receptor.
Chembiochem. 2004 Oct 29;5(11):1571-1575 PMID: 15515091

2:  Canagarajah B, Leskow FC, Ho JY, Mischak H, Saidi LF, Kazanietz MG, Hurley JH.
Structural Mechanism for Lipid Activation of the Rac-Specific GAP,
beta2-Chimaerin.
Cell. 2004 Oct 29;119(3):407-18. PMID: 15507211

3:  Saxena AK, Singh K, Long CA, Garboczi DN.
Preparation, crystallization and preliminary X-ray analysis of a complex
between the Plasmodium vivax sexual stage 25 kDa protein Pvs25 and a malaria transmission-blocking antibody Fab fragment.
Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):2054-7. Epub 2004 Oct 20. PMID: 15502325

4:  Schubot FD, Waugh DS.
A pivotal role for reductive methylation in the de novo crystallization of a
ternary complex composed of Yersinia pestis virulence factors YopN, SycN and YscB.
Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):1981-6. PMID: 15502305

5:  Zwart PH, Banumathi S, Dauter M, Dauter Z.
Radiation-damage-induced phasing with anomalous scattering: substructure solution and phasing.
Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):1958-63. PMID: 15502302

6:  Yamamoto Y, Moore R, Goldsworthy TL, Negishi M, Maronpot RR.
The orphan nuclear receptor constitutive active/androstane receptor is
essential for liver tumor promotion by phenobarbital in mice.
Cancer Res. 2004 Oct 15;64(20):7197-200. PMID: 15492232

7:  Fritz TA, Hurley JH, Trinh LB, Shiloach J, Tabak LA.
The beginnings of mucin biosynthesis: the crystal structure of
UDP-GalNAc:polypeptide alpha-N-acetylgalactosaminyltransferase-T1.
Proc Natl Acad Sci U S A. 2004 Oct 26;101(43):15307-12. PMID: 15486088

8:  Guarne A, Ramon-Maiques S, Wolff EM, Ghirlando R, Hu X, Miller JH, Yang W.
Structure of the MutL C-terminal domain: a model of intact MutL and its roles in mismatch repair.
EMBO J. 2004 Oct 27;23(21):4134-45. PMID: 15470502

9:  Dauter Z.
Phasing in iodine for structure determination.
Nat Biotechnol. 2004 Oct;22(10):1239-40. PMID: 15470459

10:  Iwahara J, Schwieters CD, Clore GM.
Characterization of nonspecific protein-DNA interactions by 1H paramagnetic relaxation enhancement.
J Am Chem Soc. 2004 Oct 13;126(40):12800-8. PMID: 15469275

11:  Agniswamy J, Lei B, Musser JM, Sun PD.
Insight of host immune evasion mediated by two variants of group a
streptococcus Mac protein.
J Biol Chem. 2004 Oct 4. PMID: 15466462

12:  Liang X, Young JJ, Boone SA, Waugh DS, Duesbery NS.
Involvement of domain II in toxicity of anthrax lethal factor.
J Biol Chem. 2004 Oct 1. PMID: 15465830

13:  Ramakrishnan B, Boeggeman E, Ramasamy V, Qasba PK.
Structure and catalytic cycle of beta-1,4-galactosyltransferase.
Curr Opin Struct Biol. 2004 Oct;14(5):593-600. PMID: 15465321

14:  Janda I, Devedjiev Y, Derewenda U, Dauter Z, Bielnicki J, Cooper DR, Graf PC, Joachimiak A, Jakob U, Derewenda ZS.
The crystal structure of the reduced, Zn2+-bound form of the B. subtilis Hsp33 chaperone and its implications for the activation mechanism.
Structure (Camb). 2004 Oct;12(10):1901-7. PMID: 15458638

15:  Schalk IJ, Yue WW, Buchanan SK.
Recognition of iron-free siderophores by TonB-dependent iron transporters.
Mol Microbiol. 2004 Oct;54(1):14-22. PMID: 15458401

16:  Ramakrishnan B, Boeggeman E, Qasba PK.
 Effect of the Met344His mutation on the conformational dynamics of bovine beta-1,4-galactosyltransferase: crystal structure of the Met344His mutant in complex with chitobiose.
Biochemistry. 2004 Oct 5;43(39):12513-22. PMID: 15449940

17:  Ofek G, Tang M, Sambor A, Katinger H, Mascola JR, Wyatt R, Kwong PD.
Structure and mechanistic analysis of the anti-human immunodeficiency virus type 1 antibody 2F5 in complex with its gp41 epitope.
J Virol. 2004 Oct;78(19):10724-37. PMID: 15367639

18:  Zou Z, Sun PD.
Overexpression of human transforming growth factor-beta1 using a recombinant CHO cell expression system.
Protein Expr Purif. 2004 Oct;37(2):265-72. PMID: 15358346

19:  Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC.
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3)
involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
J Biol Chem. 2004 Oct 22;279(43):45185-93. PMID: 15304505

Item 2: Tips and Tricks in Crystallography

This section is always open for contributions. Click for Introduction and tips and tricks in Crystallization, Derivatization, Diffraction, Symmetry, Structure Solution, Structure Refinement, and Structure Analysis.

Recommended Readings:

(1) Anomalous-scatterer-mediated crystal-packing interactions

(2) Strategies in making cross-linked enzyme crystals

 

Item 3: Topic Discussion - Protein Expression and High-throughput Expression Systems

Click for previous discussions on: Parallel Protein Expression, Structural Genomics, NCS, Missing Atoms, Trends in Crystallography, and Absorption Correction.

 


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