R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|419768|pir||S29793 protein ORF 214 (atpA 3' region) - soybean mitochondrion
>gi|22740|emb|CAA78406.1| (Z14031) orf214 [Glycine max]
Length = 214
Frame 1 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM05819: 1..214
__________________
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 41/53 (77%), Positives = 44/53 (83%), Frame = +1
Query: 13 FGRHGQSSEEKVLNAQVKIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
FG ++KVLNAQVKIERAIEKALLSDGYSRDELSQR+KRDE R LFYR
Sbjct: 99 FGDLSDQQKDKVLNAQVKIERAIEKALLSDGYSRDELSQRNKRDEIRGFLFYR 151
>gi|320576|pir||S26980 hypothetical protein 209 - kidney bean mitochondrion
>gi|169319|gb|AAB01583.1| (M64246) ORF-209; putative [Phaseolus
vulgaris]
Length = 209
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM05819: 1..209
__________________
Plus Strand HSPs:
Score = 184 (64.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 39/48 (81%), Positives = 42/48 (87%), Frame = +1
Query: 28 QSSEEKVLNAQVKIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
+ +EKVL AQV+IERAIEKALLSDGYSRDELSQRSKRDE R LFYR
Sbjct: 109 EEKKEKVLLAQVQIERAIEKALLSDGYSRDELSQRSKRDEIRGFLFYR 156
>gi|388439|gb|AAB27469.1| paired box Pax-3 gene product [chickens, embryo,
Peptide Partial, 61 aa, segment 2 of 2]
Length = 61
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.18, P = 0.17
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 15 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 49
>gi|6002393|dbj|BAA84748.1| (AB015750) homeobox protein Rax1/Rx1 [Gallus
gallus]
Length = 228
Frame 2 hits (HSPs): ___
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 228
0 50 100 150 200
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 13/36 (36%), Positives = 23/36 (63%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
++ERA EK+ D YSR+EL+ + E R ++++
Sbjct: 50 ELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQ 85
Score = 30 (10.6 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 5/10 (50%), Positives = 7/10 (70%), Frame = +2
Query: 11 CSGDMVKARK 40
C GD+ + RK
Sbjct: 6 CEGDLGELRK 15
>gi|5106930|gb|AAD39893.1|AF107295_1 (AF107295) outer membrane protein [Rattus
norvegicus]
Length = 206
Frame -1 hits (HSPs): _____
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 10/17 (58%), Positives = 12/17 (70%), Frame = -1
Query: 114 PGIPVGEQSFLNGPFDF 64
PG P GEQS +NG D+
Sbjct: 52 PGFPPGEQSDMNGRVDY 68
Score = 33 (11.6 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 8/20 (40%), Positives = 8/20 (40%), Frame = -3
Query: 169 GRTTRSFFHLVCSFEKAHPG 110
G RS HL A PG
Sbjct: 34 GEAARSLIHLHLRRAPADPG 53
>gi|1633405|pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein
Bound To A Dna Oligonucleotide >gi|1633406|pdb|1FJL|B Chain B,
Homeodomain From The Drosophila Paired Protein Bound To A Dna
Oligonucleotide >gi|1633407|pdb|1FJL|C Chain C, Homeodomain From
The Drosophila Paired Protein Bound To A Dna Oligonucleotide
Length = 81
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.48, P = 0.38
Identities = 13/36 (36%), Positives = 24/36 (66%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
++ERA E+ D Y+R+EL+QR+ E R ++++
Sbjct: 32 ELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQ 67
>gi|2143469|pir||I52812 gene Pax-3 protein - mouse (fragment)
>gi|239201|gb|AAB20359.1| (S66429) Pax-3 [mice, C3H/HeJ, Peptide
Partial, 42 aa] [Mus sp.]
Length = 42
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 42
0 20 40
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.0, P = 0.63
Identities = 13/28 (46%), Positives = 20/28 (71%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDE 147
++ERA E+ D Y+R+EL+QR+K E
Sbjct: 15 ELERAFERTHYPDIYTREELAQRAKLTE 42
>gi|555819|gb|AAA80574.1| (U12259) paired box homeotic protein [Homo sapiens]
Length = 283
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 283
0 50 100 150 200 250
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.0, P = 0.64
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 37 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 71
>gi|2136302|pir||A45452 transcription factor PAX3 - human (fragments)
Length = 326
Frame 1 hits (HSPs): ______
Annotated Domains: _________
__________________________________________________
Database sequence: | | | | 326
0 150 300
__________________
Annotated Domains:
Entrez domain: homeobox homology #label HOX 67..123
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 99..122
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.2, P = 0.71
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 80 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 114
>gi|2462779|gb|AAB71983.1| (U72659) luteinizing hormone beta subunit
[Ceratotherium simum]
Length = 135
Frame 2 hits (HSPs): ____ _________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 49 (17.2 bits), Expect = 1.2, Sum P(2) = 0.71
Identities = 9/11 (81%), Positives = 9/11 (81%), Frame = +2
Query: 68 SKGPLRKLCSP 100
SKGPLR LC P
Sbjct: 15 SKGPLRPLCRP 25
Score = 29 (10.2 bits), Expect = 1.2, Sum P(2) = 0.71
Identities = 7/21 (33%), Positives = 9/21 (42%), Frame = +2
Query: 98 PTGIPGMSFLKGANEMKEGPC 160
P G+ M A + GPC
Sbjct: 87 PPGVDPMVSFPVALSCRCGPC 107
>gi|4102797|gb|AAD01589.1| (AF016318) cyclophilin 1 [Dirofilaria immitis]
Length = 99
Frame 3 hits (HSPs): ___________
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Plus Strand HSPs:
Score = 40 (14.1 bits), Expect = 1.4, Sum P(2) = 0.75
Identities = 9/21 (42%), Positives = 12/21 (57%), Frame = +3
Query: 9 IVRETWSKLGRKSAKRTSQNR 71
+ RET SK RKS R + +
Sbjct: 36 VTRETGSKQKRKSESRDHRGK 56
Score = 34 (12.0 bits), Expect = 1.4, Sum P(2) = 0.75
Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = +1
Query: 85 KALLSDGY---SRDELSQRSKRD 144
K++ DG SRD + Q +KR+
Sbjct: 64 KSIEEDGKRSTSRDRIDQITKRE 86
>gi|3193075|gb|AAC42641.1| (AF064335) envelope glycoprotein [Human
immunodeficiency virus type 2]
Length = 106
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 40 (14.1 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = +3
Query: 18 ETWSKLGRKSAKRTSQ 65
ETWS GR++ TSQ
Sbjct: 13 ETWSSAGRETT--TSQ 26
Score = 34 (12.0 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 9/25 (36%), Positives = 11/25 (44%), Frame = +1
Query: 55 AQVKIERAIEKALLSDGYSRDELSQ 129
A + +E IE G RDE Q
Sbjct: 50 AGIGLEEVIECQFNMTGLKRDESKQ 74
>gi|6679211 ref|NP_032807.1| paired box gene 3 >gi|129650|sp|P24610|PAX3_MOUSE
PAIRED BOX PROTEIN PAX-3 >gi|110793|pir||S15031 paired box
transcription factor Pax-3 - mouse >gi|53592|emb|CAA42008.1|
(X59358) DNA binding protein [Mus musculus]
Length = 479
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 2.1, P = 0.87
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 233 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 267
>gi|1172022|sp|P23760|PAX3_HUMAN PAIRED BOX PROTEIN PAX-3 (HUP2)
Length = 479
Frame 1 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00034A: 'Paired box' domain proteins. 34..84
BLOCKS BL00034B: 'Paired box' domain proteins. 88..124
BLOCKS BL00034C: 'Paired box' domain proteins. 129..159
BLOCKS BL00027: 'Homeobox' domain proteins. 234..276
BLOCKS BL00034D: 'Paired box' domain proteins. 347..357
DOMO DM00579: PAIREDBOX 31..126
DOMO DM08778: 'PAIREDBOX'DOMAIN 128..215
DOMO DM00009: HOMEOBOX 217..278
Entrez Domain: PAIRED BOX. 34..159
Entrez dna-binding site: HOMEOBOX. 219..278
Entrez Splicing variant: ASAPQSDEGSDIDSEPDLPL - 196..215
Entrez Splicing variant: MISSING (IN PAX3A). 216..479
Entrez Splicing variant: ASAPQSDEGSD -> GKALVSG 196..206
Entrez Splicing variant: MISSING (IN PAX3B). 207..479
PFAM PAX: 'Paired box' domain 34..159
PFAM homeobox: Homeobox domain 220..276
PRINTS PAIREDBOX1: Paired box motif I - 2 38..53
PRINTS PAIREDBOX2: Paired box motif II - 2 56..74
PRINTS PAIREDBOX3: Paired box motif III - 2 76..93
PRINTS PAIREDBOX4: Paired box motif IV - 2 94..111
PRODOM PD007232: PAX3(2) 1..32
PRODOM PD005124: PAX6(7) PAX2(3) PAX3(2) 34..68
PRODOM PD000643: PAX6(7) PAX2(3) PX8A(2) 70..109
PRODOM PD000685: PAX6(7) PAX2(3) PAX3(2) 112..162
PRODOM PD006608: PAX3(2) 181..217
PRODOM PD000010: HMP1(10) PAX6(7) DLX3(6) 219..276
PRODOM PD007328: PAX3(2) 278..393
PRODOM PD009296: PAX3(2) 395..472
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 252..275
PROSITE PAIRED_BOX: 'Paired box' domain signatur 68..84
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 2.1, P = 0.87
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 233 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 267
>gi|2145076|gb|AAB58415.1| (AF000673) paired-box transcription factor protein
[Coturnix coturnix]
Length = 479
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 2.1, P = 0.87
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 228 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 262
>gi|2909767|gb|AAC41254.1| (AF014367) transcription factor PAX7A [Danio rerio]
Length = 280
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 280
0 50 100 150 200 250
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 2.1, P = 0.88
Identities = 14/35 (40%), Positives = 23/35 (65%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R + Y
Sbjct: 234 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVRY 268
>gi|2909765|gb|AAC41253.1| (AF014366) transcription factor PAX3 [Danio rerio]
Length = 509
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 509
0 150 300 450
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 2.2, P = 0.89
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 234 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 268
>gi|6539648|gb|AAF15966.1|AF106915_1 (AF106915) luteinizing hormone beta
subunit [Phodopus sungorus]
Length = 128
Frame 2 hits (HSPs): _____ _________
__________________________________________________
Database sequence: | | | | 128
0 50 100
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +2
Query: 68 SKGPLRKLCSP 100
S+GPLR LC P
Sbjct: 21 SRGPLRPLCRP 31
Score = 29 (10.2 bits), Expect = 2.3, Sum P(2) = 0.90
Identities = 7/21 (33%), Positives = 9/21 (42%), Frame = +2
Query: 98 PTGIPGMSFLKGANEMKEGPC 160
P G+ M A + GPC
Sbjct: 93 PPGVDPMVSFPVALSCRCGPC 113
>gi|3193118|gb|AAC42661.1| (AF064358) envelope glycoprotein [Human
immunodeficiency virus type 2]
Length = 107
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Plus Strand HSPs:
Score = 40 (14.1 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = +3
Query: 18 ETWSKLGRKSAKRTSQ 65
ETWS GR++ TSQ
Sbjct: 13 ETWSSAGRETT--TSQ 26
Score = 33 (11.6 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 9/25 (36%), Positives = 11/25 (44%), Frame = +1
Query: 55 AQVKIERAIEKALLSDGYSRDELSQ 129
A + +E IE G RDE Q
Sbjct: 50 AGIGLEEMIECQFNMTGLKRDESKQ 74
>gi|126476|sp|P18842|LSHB_CANFA LUTROPIN BETA CHAIN PRECURSOR (LUTEINIZING
HORMONE) (LSH-B) (LH-B) >gi|89051|pir||S00512 lutropin beta chain
precursor - dog (fragment) >gi|860906|emb|CAA68572.1| (Y00518) LH
precursor [Canis familiaris]
Length = 138
Frame 2 hits (HSPs): ____ ________
Annotated Domains: _____________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
__________________
Annotated Domains:
Entrez glycosylation site: PROBABLE. 30
PFAM Cys_knot: Cystine-knot domain 26..110
PROSITE GLYCO_HORMONE_BETA_1: Glycoprotein hormo 51..57
PROSITE GLYCO_HORMONE_BETA_2: Glycoprotein hormo 100..127
__________________
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 3.0, Sum P(2) = 0.95
Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +2
Query: 68 SKGPLRKLCSP 100
S+GPLR LC P
Sbjct: 18 SRGPLRPLCRP 28
Score = 29 (10.2 bits), Expect = 3.0, Sum P(2) = 0.95
Identities = 7/21 (33%), Positives = 9/21 (42%), Frame = +2
Query: 98 PTGIPGMSFLKGANEMKEGPC 160
P G+ M A + GPC
Sbjct: 90 PPGVDPMVSFPVALSCRCGPC 110
>gi|3617823|gb|AAC36048.1| (AF024520) luteinizing hormone beta subunit
precursor [Ceratotherium simum] >gi|3617825|gb|AAC36049.1|
(AF024521) luteinizing hormone beta subunit precursor
[Ceratotherium simum]
Length = 141
Frame 2 hits (HSPs): ____ ________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 8/11 (72%), Positives = 9/11 (81%), Frame = +2
Query: 68 SKGPLRKLCSP 100
S+GPLR LC P
Sbjct: 21 SRGPLRPLCRP 31
Score = 29 (10.2 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 7/21 (33%), Positives = 9/21 (42%), Frame = +2
Query: 98 PTGIPGMSFLKGANEMKEGPC 160
P G+ M A + GPC
Sbjct: 93 PPGVDPMVSFPVALSCRCGPC 113
>gi|2909773|gb|AAC41257.1| (AF014370) transcription factor PAX7E [Danio rerio]
Length = 395
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 395
0 150 300
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 3.4, P = 0.97
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 234 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 268
>gi|1352721|sp|P47239|PAX7_MOUSE PAIRED BOX PROTEIN PAX-7
>gi|2137624|pir||I49265 Pax7 - mouse (fragment)
>gi|736381|gb|AAA64491.1| (U20792) Pax7 [Mus musculus]
Length = 290
Frame 1 hits (HSPs): _______
Annotated Domains: ______________________ ___________
__________________________________________________
Database sequence: | | | | | | | 290
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Domain: PAIRED BOX. 1..125
Entrez dna-binding site: HOMEOBOX. 181..240
PFAM PAX: 'Paired box' domain 1..125
PFAM homeobox: Homeobox domain 182..238
PROSITE PAIRED_BOX: 'Paired box' domain signatur 34..50
__________________
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 3.7, P = 0.97
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 195 ELEKAFERTHYPDIYTREELAQRTKLTEARFQVWF 229
>gi|560583|gb|AAB30807.1| PAX7-FKHR=chimeric transcription factor(FKHR, PAX7)
{translocation} [human, alveolar rhabdomyosarcoma patient, Peptide,
420 aa]
Length = 420
Frame 1 hits (HSPs): _____
Annotated Domains: ___ ____
__________________________________________________
Database sequence: | | | | 420
0 150 300
__________________
Annotated Domains:
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 223..246
PROSITE PAIRED_BOX: 'Paired box' domain signatur 39..55
__________________
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 3.7, P = 0.97
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 204 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 238
>gi|3193063|gb|AAC42635.1| (AF064329) envelope glycoprotein [Human
immunodeficiency virus type 2]
Length = 107
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Plus Strand HSPs:
Score = 40 (14.1 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = +3
Query: 18 ETWSKLGRKSAKRTSQ 65
ETWS GR++ TSQ
Sbjct: 13 ETWSSAGRETT--TSQ 26
Score = 31 (10.9 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 8/25 (32%), Positives = 11/25 (44%), Frame = +1
Query: 55 AQVKIERAIEKALLSDGYSRDELSQ 129
A + +E I+ G RDE Q
Sbjct: 50 AGIGLEEMIDCQFNMSGLKRDESKQ 74
>gi|431254|gb|AAC50053.1| (U02368) PAX3 protein-forkhead transcription factor
fusion [Homo sapiens] >gi|6636097|gb|AAF20054.1|AF178854_1
(AF178854) Pax3-forkhead fusion protein [synthetic construct]
Length = 836
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 836
0 150 300 450 600 750
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 4.0, P = 0.98
Identities = 14/35 (40%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+K E R +++
Sbjct: 233 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWF 267
>gi|6753740 ref|NP_034253.1| eukaryotic translation initiation factor 3
>gi|1083257|pir||S52391 centrosomin B - mouse
>gi|671560|emb|CAA59144.1| (X84651) centrosomin B [Mus musculus]
Length = 447
Frame 1 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | 447
0 150 300
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 4.1, Sum P(2) = 0.98
Identities = 10/33 (30%), Positives = 21/33 (63%), Frame = +1
Query: 73 RAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
+ E+ L + +SR E +R +++ER+ + +YR
Sbjct: 263 KQFEERLAEERHSRLEDRKRQRKEERK-ITYYR 294
Score = 40 (14.1 bits), Expect = 4.1, Sum P(2) = 0.98
Identities = 7/19 (36%), Positives = 13/19 (68%), Frame = +1
Query: 28 QSSEEKVLNAQVKIERAIE 84
Q EE++ Q++ E+A+E
Sbjct: 213 QQEEERITTMQLEREKALE 231
>gi|1172023|sp|P23759|PAX7_HUMAN PAIRED BOX PROTEIN PAX-7 (HUP1)
>gi|1085403|pir||S50115 transcription factor pax-7 - human
(fragment) >gi|602343|emb|CAA84513.1| (Z35141) PAX7 paired box
containing transcription factor [Homo sapiens]
Length = 467
Frame 1 hits (HSPs): _____
Annotated Domains: __________________ _______________________________
__________________________________________________
Database sequence: | | | | | 467
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00034A: 'Paired box' domain proteins. 34..84
BLOCKS BL00034B: 'Paired box' domain proteins. 88..124
BLOCKS BL00034C: 'Paired box' domain proteins. 129..159
BLOCKS BL00027: 'Homeobox' domain proteins. 232..274
BLOCKS BL00034D: 'Paired box' domain proteins. 383..393
DOMO DM00579: PAIREDBOX 31..145
DOMO DM00009: HOMEOBOX 213..276
Entrez Domain: PAIRED BOX. 34..161
Entrez dna-binding site: HOMEOBOX. 217..276
Entrez Domain: POLY-ALA. 340..346
PFAM PAX: 'Paired box' domain 34..161
PFAM homeobox: Homeobox domain 218..274
PRINTS PAIREDBOX1: Paired box motif I - 2 38..53
PRINTS PAIREDBOX2: Paired box motif II - 2 56..74
PRINTS PAIREDBOX3: Paired box motif III - 2 76..93
PRINTS PAIREDBOX4: Paired box motif IV - 2 94..111
PRODOM PD007232: PAX3(2) 1..32
PRODOM PD005124: PAX6(7) PAX2(3) PAX3(2) 34..68
PRODOM PD000643: PAX6(7) PAX2(3) PX8A(2) 70..107
PRODOM PD000685: PAX6(7) PAX2(3) PAX3(2) 112..164
PRODOM PD006608: PAX3(2) 180..215
PRODOM PD000010: HMP1(10) PAX6(7) DLX3(6) 217..274
PRODOM PD007328: PAX3(2) 276..385
PRODOM PD009296: PAX3(2) 389..466
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 250..273
PROSITE PAIRED_BOX: 'Paired box' domain signatur 68..84
__________________
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.2, P = 0.99
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 231 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 265
>gi|2909771|gb|AAC41256.1| (AF014369) transcription factor PAX7D [Danio rerio]
Length = 487
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.4, P = 0.99
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 234 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 268
>gi|7595813|gb|AAF64461.1|AF241311_1 (AF241311) transcription factor PaxD
[Acropora millepora]
Length = 342
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 342
0 150 300
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 4.6, P = 0.99
Identities = 16/51 (31%), Positives = 28/51 (54%), Frame = +1
Query: 19 RHGQSSEEKVLNAQVK-IERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
R + S K +AQ+ +E+A +K D Y+R+EL+ R E R +++
Sbjct: 233 RKQRRSRTKFTHAQLNALEKAFQKTQYPDVYTREELAHRLSLTEARVQVWF 283
>gi|2909769|gb|AAC41255.1| (AF014368) transcription factor PAX7C [Danio rerio]
Length = 507
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 507
0 150 300 450
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.7, P = 0.99
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 234 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 268
>gi|7524359 ref|NP_039236.1| paired box gene 7, isoform 2; paired domain gene 7
>gi|2570014|emb|CAA65521.1| (X96744) PAX7 [Homo sapiens]
Length = 518
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 518
0 150 300 450
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.8, P = 0.99
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 229 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 263
>gi|4505619 ref|NP_002575.1| paired box gene 7, isoform 1; paired domain gene 7
>gi|7446238|pir||S78502 paired box transcription factor PAX7, long
splice form - human >gi|2570015|emb|CAA65522.1| (X96744)
alternative [Homo sapiens] >gi|2570021|emb|CAA65520.1| (X96743)
paired box containing transcription factor [Homo sapiens]
>gi|3115988|emb|CAA16432.1| (AL021528) dJ394P21.1 (PAX-7) [Homo
sapiens]
Length = 520
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 520
0 150 300 450
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.8, P = 0.99
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 231 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 265
>gi|2576239|dbj|BAA23005.1| (D87838) PAX7 protein [Gallus gallus]
Length = 524
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 524
0 150 300 450
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.9, P = 0.99
Identities = 13/35 (37%), Positives = 24/35 (68%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++E+A E+ D Y+R+EL+QR+K E R +++
Sbjct: 229 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWF 263
>gi|420441|pir||S31628 MA28L protein - myxoma virus >gi|60612|emb|CAA79662.1|
(Z19600) unknown [Myxoma virus]
>gi|6523971|gb|AAF15004.1|AF170726_120 (AF170726) m116L [Myxoma
virus]
Length = 140
Frame -1 hits (HSPs): ___________
Frame -2 hits (HSPs): _______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 140
0 50 100
__________________
Annotated Domains:
DOMO DM03160: SHEEPPOXVIRUSHM3PROTEIN 1..140
__________________
Minus Strand HSPs:
Score = 44 (15.5 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 10/18 (55%), Positives = 12/18 (66%), Frame = -2
Query: 62 TCAFSTFSSEL*PCLPNN 9
T + ST SS L PC+P N
Sbjct: 109 TFSTSTHSSILNPCIPPN 126
Score = 29 (10.2 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 7/29 (24%), Positives = 13/29 (44%), Frame = -1
Query: 150 SFISFAPLRKLIPGIPVGEQSFLNGPFDF 64
S++S + G+ + LNG D+
Sbjct: 80 SYVSLSMFGYKADGVGIRRFRTLNGCIDY 108
>gi|3789862|gb|AAC67524.1| (AF067805) PspGI restriction endonuclease
[Pyrococcus sp. GI-H]
Length = 272
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 5.5, P = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Frame = +1
Query: 37 EEKVLNAQVKIERAIEKALLSDGYSRDELSQ 129
EEK + E+ + +A LS GYSR++L Q
Sbjct: 60 EEKAFEIYKEYEKQVREAYLSAGYSREKLEQ 90
>gi|7293597|gb|AAF48969.1| (AE003512) CG14202 gene product [Drosophila
melanogaster]
Length = 112
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 112
0 50 100
Plus Strand HSPs:
Score = 57 (20.1 bits), Expect = 5.6, P = 1.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLF 165
++E A K+ D Y R+EL++ +K +E R LF
Sbjct: 74 ELEAAFAKSHYPDIYCREELARTTKLNEARIQLF 107
>gi|2240026|gb|AAB62325.1| (AF001907) retinal homeobox protein [Danio rerio]
Length = 202
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 5.7, P = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
++ERA EK+ D YSR+EL+ + E R ++++
Sbjct: 23 ELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQ 58
>gi|3193042|gb|AAC42626.1| (AF064317) envelope glycoprotein [Human
immunodeficiency virus type 2]
Length = 107
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Plus Strand HSPs:
Score = 40 (14.1 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = +3
Query: 18 ETWSKLGRKSAKRTSQ 65
ETWS GR++ TSQ
Sbjct: 13 ETWSSAGRETT--TSQ 26
Score = 29 (10.2 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 8/25 (32%), Positives = 11/25 (44%), Frame = +1
Query: 55 AQVKIERAIEKALLSDGYSRDELSQ 129
A + +E I+ G RDE Q
Sbjct: 50 AGIGLEGMIDCQFNMSGLKRDESKQ 74
>gi|4138292|emb|CAA07775.1| (AJ007939) Rx2 protein [Oryzias latipes]
Length = 188
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 188
0 50 100 150
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 6.5, P = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
++ERA EK+ D YSR+EL+ + E R ++++
Sbjct: 24 ELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQ 59
>gi|2305107|gb|AAB65697.1| (AF009954) phytoene synthase [Arabidopsis thaliana]
Length = 422
Frame 1 hits (HSPs): _____ ___
__________________________________________________
Database sequence: | | | | 422
0 150 300
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 6.8, Sum P(2) = 1.0
Identities = 14/34 (41%), Positives = 16/34 (47%), Frame = +1
Query: 16 GRHGQSSEEKVLNAQVKIERAIEKALLSDGYSRD 117
G SSEEKV N +K + K L S Y D
Sbjct: 79 GEIALSSEEKVYNVVLKQAALVNKQLRSSSYDLD 112
Score = 29 (10.2 bits), Expect = 6.8, Sum P(2) = 1.0
Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = +1
Query: 112 RDELSQRSKRDE 147
+DEL+Q DE
Sbjct: 312 QDELAQAGLSDE 323
>gi|585748|sp|P37271|PSY_ARATH PHYTOENE SYNTHASE PRECURSOR
>gi|413732|gb|AAA32836.1| (L25812) phytoene synthase [Arabidopsis
thaliana]
Length = 423
Frame 1 hits (HSPs): _____ ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 423
0 150 300
__________________
Annotated Domains:
DOMO DM02244: SQUALENEANDPHYTOENESYNTHASES 1..124
DOMO DM00684: SQUALENEANDPHYTOENESYNTHASES 126..414
PFAM SQS_PSY: Squalene and phytoene synthases 140..414
PRODOM PD007377: PSY(5) 4..114
PRODOM PD001082: CRTB(10) FDFT(9) PSY(6) 128..379
PRODOM PD009861: PSY(5) O22375(1) PSY1(1) 381..416
PROSITE SQUALEN_PHYTOEN_SYN_1: Squalene and phyt 251..266
PROSITE SQUALEN_PHYTOEN_SYN_2: Squalene and phyt 287..312
__________________
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 6.8, Sum P(2) = 1.0
Identities = 14/34 (41%), Positives = 16/34 (47%), Frame = +1
Query: 16 GRHGQSSEEKVLNAQVKIERAIEKALLSDGYSRD 117
G SSEEKV N +K + K L S Y D
Sbjct: 79 GEIALSSEEKVYNVVLKQAALVNKQLRSSSYDLD 112
Score = 29 (10.2 bits), Expect = 6.8, Sum P(2) = 1.0
Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = +1
Query: 112 RDELSQRSKRDE 147
+DEL+Q DE
Sbjct: 313 QDELAQAGLSDE 324
>gi|4505315 ref|NP_003961.1| myomesin 2; titin-associated protein, 165 kD;
M-band protein >gi|1709093|sp|P54296|MYM2_HUMAN MYOMESIN 2
(M-PROTEIN) (165 KD TITIN-ASSOCIATED PROTEIN) (165 KD
CONNECTIN-ASSOCIATED PROTEIN) >gi|631048|pir||S43529 165K protein,
skeletal muscle - human >gi|407097|emb|CAA48832.1| (X69089) 165kD
protein [Homo sapiens]
Length = 1465
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 1465
0 500 1000
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 7.4, P = 1.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Frame = +2
Query: 20 DMVKARKKKC*THKSKSKGPLRKLCSPTGIPGMSFLKG-ANEMKEGPC 160
DM+ A + C KS PL+ LC+P GI F+K +EMK C
Sbjct: 1222 DMILAMSRVC----GKSASPLKVLCTPEGIRLQCFMKYFTDEMKVNWC 1265
>gi|7243783|gb|AAF43449.1|AF239614_1 (AF239614) M-Protein [Homo sapiens]
Length = 1465
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 1465
0 500 1000
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 7.4, P = 1.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Frame = +2
Query: 20 DMVKARKKKC*THKSKSKGPLRKLCSPTGIPGMSFLKG-ANEMKEGPC 160
DM+ A + C KS PL+ LC+P GI F+K +EMK C
Sbjct: 1222 DMILAMSRVC----GKSASPLKVLCTPEGIRLQCFMKYFTDEMKVNWC 1265
>gi|1743856|gb|AAB39104.1| (U57759) intrageneric coaggregation-relevant adhesin
[Streptococcus gordonii]
Length = 311
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 311
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 8.6, P = 1.0
Identities = 13/23 (56%), Positives = 17/23 (73%), Frame = +1
Query: 43 KVLNAQVKIERAIEKALLSDGYS 111
+VL Q +IE AIEKA+ +GYS
Sbjct: 228 EVLERQAEIEAAIEKAIADNGYS 250
>gi|6319412 ref|NP_009494.1| Ybl059wp >gi|465518|sp|P34224|YBF9_YEAST
HYPOTHETICAL 22.3 KD PROTEIN IN SKT5-SHP1 INTERGENIC REGION
>gi|542312|pir||S39829 probable membrane protein YBL059w - yeast
(Saccharomyces cerevisiae) >gi|313739|emb|CAA80788.1| (Z23261)
YBLO516 [Saccharomyces cerevisiae] >gi|602084|emb|CAA84879.1|
(Z35820) ORF YBL059w [Saccharomyces cerevisiae]
Length = 193
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 8.8, P = 1.0
Identities = 13/28 (46%), Positives = 18/28 (64%), Frame = -3
Query: 157 RSF-FHLVCSFEKAHPGNTRRRAELSQWP 74
RSF +++C E H NTRR+ E+ WP
Sbjct: 11 RSFSINVIC--ELKHNVNTRRKFEIKDWP 37
>gi|4519627|dbj|BAA75673.1| (AB017633) Djrax [Dugesia japonica]
Length = 268
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 8.9, P = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFYR 171
++ERA EK+ D YSR+EL+ + E R ++++
Sbjct: 101 ELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQ 136
>gi|7496121|pir||T29397 hypothetical protein C16C8.11 - Caenorhabditis elegans
>gi|1707098|gb|AAB37853.1| (U80452) weak similarity to ubiquitin
[Caenorhabditis elegans]
Length = 214
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 9.1, Sum P(2) = 1.0
Identities = 9/20 (45%), Positives = 12/20 (60%), Frame = +2
Query: 89 LCSPTGIPGMSFLKGANEMK 148
LC +PG F GAN+M+
Sbjct: 144 LCIAVSMPGRLFSIGANKME 163
Score = 31 (10.9 bits), Expect = 9.1, Sum P(2) = 1.0
Identities = 8/19 (42%), Positives = 11/19 (57%), Frame = +1
Query: 37 EEKVLNAQVKIERAIEKAL 93
E+KV + K R+ E AL
Sbjct: 114 EQKVGESSKKSPRSAESAL 132
>gi|7297914|gb|AAF53160.1| (AE003634) prd gene product [Drosophila
melanogaster]
Length = 590
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 590
0 150 300 450
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 9.2, P = 1.0
Identities = 13/35 (37%), Positives = 23/35 (65%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+ E R +++
Sbjct: 204 ELERAFERTQYPDIYTREELAQRTNLTEARIQVWF 238
>gi|123412|sp|P06601|HMPR_DROME SEGMENTATION PROTEIN PAIRED
>gi|85138|pir||A26062 paired box segmentation protein prd - fruit
fly (Drosophila melanogaster) >gi|158160|gb|AAB59221.1| (M14548)
segmentation protein [Drosophila melanogaster]
Length = 613
Frame 1 hits (HSPs): ____
Annotated Domains: _______________________ __________________________
__________________________________________________
Database sequence: | | | | | | 613
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00034A: 'Paired box' domain proteins. 27..77
BLOCKS BL00034B: 'Paired box' domain proteins. 81..117
BLOCKS BL00034C: 'Paired box' domain proteins. 121..151
BLOCKS BL00027: 'Homeobox' domain proteins. 228..270
BLOCKS BL00034D: 'Paired box' domain proteins. 594..604
DOMO DM00579: PAIREDBOX 24..139
DOMO DM00009: HOMEOBOX 211..272
Entrez Domain: PAIRED BOX. 27..151
Entrez dna-binding site: HOMEOBOX. 213..272
Entrez Domain: HIS/PRO-RICH REGION. 541..576
PFAM PAX: 'Paired box' domain 27..151
PFAM homeobox: Homeobox domain 214..270
PRINTS PAIREDBOX1: Paired box motif I - 2 31..46
PRINTS PAIREDBOX2: Paired box motif II - 2 49..67
PRINTS PAIREDBOX3: Paired box motif III - 2 69..86
PRINTS PAIREDBOX4: Paired box motif IV - 2 87..104
PRODOM PD062261: HMPR_DROME 1..22
PRODOM PD005124: PAX6(7) PAX2(3) PAX3(2) 24..61
PRODOM PD000643: PAX6(7) PAX2(3) PX8A(2) 63..102
PRODOM PD000685: PAX6(7) PAX2(3) PAX3(2) 104..154
PRODOM PD062278: HMPR_DROME 156..211
PRODOM PD000010: HMP1(10) PAX6(7) DLX3(6) 213..271
PRODOM PD117393: HMPR_DROME 306..541
PRODOM PD050377: HMPR_DROME 565..612
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 246..269
PROSITE PAIRED_BOX: 'Paired box' domain signatur 61..77
__________________
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 9.6, P = 1.0
Identities = 13/35 (37%), Positives = 23/35 (65%), Frame = +1
Query: 64 KIERAIEKALLSDGYSRDELSQRSKRDERRTLLFY 168
++ERA E+ D Y+R+EL+QR+ E R +++
Sbjct: 227 ELERAFERTQYPDIYTREELAQRTNLTEARIQVWF 261
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.148 0.466
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.144 0.494
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.316 0.134 0.348 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.153 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.148 0.461
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.342 0.147 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 56 56 10. 57 3 12 22 0.12 29
26 0.11 29
+2 0 56 55 10. 57 3 12 22 0.12 29
26 0.10 29
+1 0 57 56 10. 57 3 12 22 0.11 29
26 0.11 29
-1 0 57 56 10. 57 3 12 22 0.12 29
26 0.11 29
-2 0 56 56 10. 57 3 12 22 0.12 29
26 0.11 29
-3 0 56 56 10. 57 3 12 22 0.12 29
26 0.11 29
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 50
No. of states in DFA: 560 (55 KB)
Total size of DFA: 94 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 78.70u 1.10s 79.80t Elapsed: 00:00:27
Total cpu time: 78.73u 1.19s 79.92t Elapsed: 00:00:27
Start: Wed Feb 14 23:59:53 2001 End: Thu Feb 15 00:00:20 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000