Contactin 6 (Cntn6)

Restricted Expression:

spinal cord [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

brain; mixed; spinal cord; eye; embryonic tissue; ovary

NCBI

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Finding cDNAs

UGID:1120707 UniGene Mm.321671 Mus musculus (mouse) Cntn6

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Contactin 6 (Cntn6)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_059079.2	contactin 6	M. musculus	100.0	1027
NP_055276.1	contactin 6	H. sapiens	90.8	1027
NP_001085050.1	hypothetical protein LOC432118	X. laevis	59.4	1015
NP_001073520.1	hypothetical protein LOC571349	D. rerio	57.5	1020

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	6
	Map position:	6 E2

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AK052972.1	Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930005M21 product:contactin 6, full insert sequence	P
BC076594.1	Mus musculus contactin 6, mRNA (cDNA clone MGC:100179 IMAGE:30649661), complete cds	PA
AK140013.1	Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230039H12 product:contactin 6, full insert sequence
AB032602.1	Mus musculus mNB-3 mRNA for neural recognition molecule NB-3, complete cds	P
NM_017383.3	Mus musculus contactin 6 (Cntn6), mRNA	PA

EST sequences (10 of 30) [Show all sequences]

BY003549.1	Clone E530115C21	brain	5' read
BY078465.1	Clone K630014K07	mixed	5' read
BY078270.1	Clone K630013J08	brain	5' read
BY726811.1	Clone B230030N01	brain	5' read
BY726927.1	Clone B230039H12	brain	5' read
BY728665.1	Clone C230052M08	brain	5' read
CN461086.1	Clone IMAGE:30649661	eye	5' read	P
CO044392.1	Clone IMAGE:30649661	eye	3' read	PA
DV661364.1	Clone DS205A_F05	ovary	5' read	P
AI850988.1	Clone UI-M-BH0-ajv-a-03-0-UI	mixed	3' read	PA

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria