| Kingdom |
Category |
Genus/Species |
Count |
| Archaea |
|
|
95 |
| |
Crenarchaeota |
|
7 |
| |
|
Nitrosopumilus maritimus (nmr) |
1 |
| |
|
Staphylothermus marinus (smr) |
2 |
| |
|
Sulfolobus solfataricus (sso) |
2 |
| |
|
Thermofilum pendens (tpe) |
2 |
| |
Euryarchaeota |
|
88 |
| |
|
Halobacterium sp. NRC-1 (hal) |
2 |
| |
|
Haloarcula marismortui (hma) |
2 |
| |
|
Haloquadratum walsbyi (hwa) |
2 |
| |
|
Methanosarcina acetivorans (mac) |
7 |
| |
|
Methanococcus aeolicus (mae) |
2 |
| |
|
Methanosarcina barkeri (mba) |
10 |
| |
|
Methanococcoides burtonii (mbu) |
7 |
| |
|
Methanoculleus marisnigri (mem) |
4 |
| |
|
Methanospirillum hungatei (mhu) |
1 |
| |
|
Methanococcus jannaschii (mja) |
3 |
| |
|
Methanopyrus kandleri (mka) |
4 |
| |
|
Methanosarcina mazei (mma) |
7 |
| |
|
Methanococcus maripaludis S2 (mmp) |
1 |
| |
|
Methanococcus maripaludis C5 (mmq) |
5 |
| |
|
Methanococcus maripaludis C6 (mmx) |
1 |
| |
|
Methanococcus maripaludis C7 (mmz) |
1 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
2 |
| |
|
Methanosaeta thermophila (mtp) |
4 |
| |
|
Methanococcus vannielii (mvn) |
2 |
| |
|
Natronomonas pharaonis (nph) |
2 |
| |
|
Pyrococcus abyssi (pab) |
5 |
| |
|
Pyrococcus furiosus (pfu) |
6 |
| |
|
Pyrococcus horikoshii (pho) |
2 |
| |
|
Picrophilus torridus (pto) |
1 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
4 |
| |
|
Thermococcus kodakaraensis (tko) |
1 |
| Bacteria |
|
|
2028 |
| |
Acidobacteria |
|
7 |
| |
|
Acidobacteria bacterium (aba) |
6 |
| |
|
Solibacter usitatus (sus) |
1 |
| |
Actinobacteria |
|
46 |
| |
|
Arthrobacter aurescens (aau) |
1 |
| |
|
Acidothermus cellulolyticus (ace) |
2 |
| |
|
Arthrobacter sp. FB24 (art) |
1 |
| |
|
Bifidobacterium adolescentis (bad) |
4 |
| |
|
Frankia sp. EAN1pec (fre) |
1 |
| |
|
Kineococcus radiotolerans (kra) |
2 |
| |
|
Mycobacterium vanbaalenii (mva) |
1 |
| |
|
Nocardioides sp. JS614 (nca) |
4 |
| |
|
Rhodococcus sp. RHA1 (rha) |
3 |
| |
|
Renibacterium salmoninarum (rsa) |
1 |
| |
|
Rubrobacter xylanophilus (rxy) |
10 |
| |
|
Streptomyces coelicolor (sco) |
5 |
| |
|
Saccharopolyspora erythraea (sen) |
2 |
| |
|
Streptomyces avermitilis (sma) |
5 |
| |
|
Salinispora tropica (stp) |
1 |
| |
|
Thermobifida fusca (tfu) |
3 |
| |
Bacteroides |
|
27 |
| |
|
Bacteroides fragilis YCH46 (bfr) |
4 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
1 |
| |
|
Bacteroides vulgatus (bvu) |
1 |
| |
|
Cytophaga hutchinsonii (chu) |
4 |
| |
|
Flavobacterium johnsoniae (fjo) |
1 |
| |
|
Flavobacterium psychrophilum (fps) |
3 |
| |
|
Gramella forsetii (gfo) |
1 |
| |
|
Parabacteroides distasonis (pdi) |
4 |
| |
|
Porphyromonas gingivalis (pgi) |
1 |
| |
|
Salinibacter ruber (sru) |
7 |
| |
Chlamydia |
|
2 |
| |
|
Candidatus Protochlamydia amoebophila (pcu) |
2 |
| |
Cyanobacteria |
|
30 |
| |
|
Acaryochloris marina (amr) |
6 |
| |
|
Anabaena sp. PCC7120 (ana) |
1 |
| |
|
Anabaena variabilis (ava) |
3 |
| |
|
Cyanobacteria Yellowstone A-Prime (cya) |
1 |
| |
|
Cyanobacteria Yellowstone B-Prime (cyb) |
2 |
| |
|
Gloeobacter violaceus (gvi) |
3 |
| |
|
Prochlorococcus marinus SS120 (pma) |
1 |
| |
|
Prochlorococcus marinus MIT 9303 (pmf) |
1 |
| |
|
Prochlorococcus marinus MED4 (pmm) |
1 |
| |
|
Synechococcus elongatus PCC7942 (syf) |
1 |
| |
|
Synechocystis sp. PCC6803 (syn) |
7 |
| |
|
Trichodesmium erythraeum (ter) |
3 |
| |
Deinococcus-Thermus |
|
9 |
| |
|
Deinococcus geothermalis (dge) |
7 |
| |
|
Thermus thermophilus HB8 (ttj) |
2 |
| |
Firmicutes |
|
1545 |
| |
|
Alkaliphilus metalliredigens (amt) |
104 |
| |
|
Alkaliphilus oremlandii (aoe) |
65 |
| |
|
Bacillus anthracis Sterne (bat) |
2 |
| |
|
Bacillus amyloliquefaciens (bay) |
6 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
4 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
4 |
| |
|
Bacillus clausii (bcl) |
6 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
18 |
| |
|
Bacillus halodurans (bha) |
33 |
| |
|
Bacillus licheniformis DSM13 (bld) |
15 |
| |
|
Bacillus pumilus (bpu) |
4 |
| |
|
Bacillus subtilis (bsu) |
15 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
5 |
| |
|
Bacillus thuringiensis Al Hakam (btl) |
8 |
| |
|
Bacillus weihenstephanensis (bwe) |
8 |
| |
|
Clostridium acetobutylicum (cac) |
23 |
| |
|
Clostridium botulinum A ATCC 19397 (cba) |
2 |
| |
|
Clostridium beijerinckii (cbe) |
30 |
| |
|
Clostridium botulinum F (cbf) |
32 |
| |
|
Clostridium botulinum A Hall (cbh) |
16 |
| |
|
Clostridium botulinum A (cbo) |
2 |
| |
|
Clostridium difficile (cdf) |
25 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
102 |
| |
|
Clostridium kluyveri (ckl) |
12 |
| |
|
Clostridium novyi (cno) |
30 |
| |
|
Clostridium perfringens 13 (cpe) |
4 |
| |
|
Clostridium perfringens ATCC 13124 (cpf) |
8 |
| |
|
Clostridium perfringens SM101 (cpr) |
9 |
| |
|
Clostridium phytofermentans (cpy) |
19 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
52 |
| |
|
Clostridium tetani E88 (ctc) |
35 |
| |
|
Clostridium thermocellum (cth) |
106 |
| |
|
Desulfotomaculum reducens (drm) |
115 |
| |
|
Desulfitobacterium hafniense (dsy) |
42 |
| |
|
Enterococcus faecalis (efa) |
1 |
| |
|
Geobacillus kaustophilus (gka) |
20 |
| |
|
Geobacillus thermodenitrificans (gtn) |
24 |
| |
|
Lactobacillus delbrueckii ATCC BAA-365 (lbu) |
2 |
| |
|
Lactobacillus casei (lca) |
2 |
| |
|
Lactobacillus helveticus (lhe) |
1 |
| |
|
Listeria innocua (lin) |
1 |
| |
|
Lactococcus lactis subsp. cremoris MG1363 (llm) |
2 |
| |
|
Listeria monocytogenes EGD-e (lmo) |
6 |
| |
|
Lactobacillus plantarum (lpl) |
2 |
| |
|
Lactobacillus reuteri (lre) |
1 |
| |
|
Listeria welshimeri SLCC5334 (lwe) |
3 |
| |
|
Mycoplasma penetrans (mpe) |
1 |
| |
|
Moorella thermoacetica (mta) |
124 |
| |
|
Oceanobacillus iheyensis (oih) |
14 |
| |
|
Pediococcus pentosaceus (ppe) |
1 |
| |
|
Pelotomaculum thermopropionicum (pth) |
101 |
| |
|
Staphylococcus aureus Newman (sae) |
1 |
| |
|
Staphylococcus epidermidis RP62A (ser) |
1 |
| |
|
Streptococcus mutans (smu) |
2 |
| |
|
Streptococcus pneumoniae D39 (spd) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
26 |
| |
|
Syntrophomonas wolfei (swo) |
44 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
203 |
| |
Fusobacteria |
|
6 |
| |
|
Fusobacterium nucleatum (fnu) |
6 |
| |
Green nonsulfur bacteria |
|
25 |
| |
|
Chloroflexus aurantiacus (cau) |
3 |
| |
|
Dehalococcoides sp. BAV1 (deb) |
4 |
| |
|
Dehalococcoides sp. CBDB1 (deh) |
1 |
| |
|
Dehalococcoides ethenogenes (det) |
3 |
| |
|
Herpetosiphon aurantiacus (hau) |
6 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
4 |
| |
|
Roseiflexus sp. RS-1 (rrs) |
4 |
| |
Green sulfur bacteria |
|
7 |
| |
|
Chlorobium chlorochromatii (cch) |
1 |
| |
|
Chlorobium phaeobacteroides (cph) |
2 |
| |
|
Chlorobaculum tepidum (cte) |
1 |
| |
|
Pelodictyon luteolum (plt) |
1 |
| |
|
Prosthecochloris vibrioformis (pvi) |
2 |
| |
Hyperthermophilic bacteria |
|
138 |
| |
|
Aquifex aeolicus (aae) |
4 |
| |
|
Fervidobacterium nodosum (fno) |
11 |
| |
|
Petrotoga mobilis (pmo) |
57 |
| |
|
Thermotoga lettingae (tle) |
20 |
| |
|
Thermotoga maritima (tma) |
10 |
| |
|
Thermosipho melanesiensis (tme) |
19 |
| |
|
Thermotoga petrophila (tpt) |
17 |
| |
Planctomyces |
|
1 |
| |
|
Rhodopirellula baltica (rba) |
1 |
| |
Proteobacteria |
|
172 |
| |
|
Alcanivorax borkumensis (abo) |
1 |
| |
|
Acidiphilium cryptum JF-5 (acr) |
1 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
2 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
1 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
1 |
| |
|
Aeromonas hydrophila (aha) |
1 |
| |
|
Aeromonas salmonicida (asa) |
1 |
| |
|
Actinobacillus succinogenes (asu) |
1 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
1 |
| |
|
Azoarcus sp. BH72 (azo) |
3 |
| |
|
Bdellovibrio bacteriovorus (bba) |
3 |
| |
|
Burkholderia cenocepacia HI2424 (bch) |
1 |
| |
|
Burkholderia multivorans (bmu) |
1 |
| |
|
Campylobacter concisus 13826 (cco) |
1 |
| |
|
Campylobacter fetus (cff) |
1 |
| |
|
Colwellia psychrerythraea (cps) |
3 |
| |
|
Desulfovibrio desulfuricans (dde) |
4 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
5 |
| |
|
Desulfotalea psychrophila (dps) |
8 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
1 |
| |
|
Desulfovibrio vulgaris Hildenborough (dvu) |
1 |
| |
|
Azoarcus sp. EbN1 (eba) |
1 |
| |
|
Escherichia coli 536 (UPEC) (ecp) |
1 |
| |
|
Escherichia coli O157 Sakai (EHEC) (ecs) |
1 |
| |
|
Geobacter metallireducens (gme) |
7 |
| |
|
Geobacter sulfurreducens (gsu) |
9 |
| |
|
Geobacter uraniumreducens (gur) |
13 |
| |
|
Hahella chejuensis (hch) |
3 |
| |
|
Haemophilus influenzae PittEE (hip) |
1 |
| |
|
Lawsonia intracellularis (lip) |
1 |
| |
|
Methylococcus capsulatus (mca) |
2 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
2 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
1 |
| |
|
Myxococcus xanthus (mxa) |
4 |
| |
|
Nitrosomonas eutropha (net) |
2 |
| |
|
Nitrosospira multiformis (nmu) |
1 |
| |
|
Nitrosococcus oceani (noc) |
1 |
| |
|
Ochrobactrum anthropi (oan) |
3 |
| |
|
Pseudoalteromonas atlantica (pat) |
1 |
| |
|
Pelobacter carbinolicus (pca) |
9 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Polaromonas naphthalenivorans (pna) |
1 |
| |
|
Pelobacter propionicus (ppd) |
6 |
| |
|
Photobacterium profundum (ppr) |
4 |
| |
|
Rhizobium etli (ret) |
1 |
| |
|
Rhodoferax ferrireducens (rfr) |
1 |
| |
|
Rhizobium leguminosarum (rle) |
1 |
| |
|
Rickettsia massiliae (rms) |
1 |
| |
|
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
| |
|
Rhodopseudomonas palustris HaA2 (rpb) |
1 |
| |
|
Rhodospirillum rubrum (rru) |
1 |
| |
|
Sphingopyxis alaskensis (sal) |
1 |
| |
|
Syntrophus aciditrophicus (sat) |
13 |
| |
|
Sorangium cellulosum (scl) |
2 |
| |
|
Saccharophagus degradans (sde) |
2 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
3 |
| |
|
Shigella flexneri 8401 (serotype 5b) (sfv) |
1 |
| |
|
Shewanella sp. W3-18-1 (shw) |
1 |
| |
|
Shewanella loihica (slo) |
2 |
| |
|
Sinorhizobium medicae (smd) |
1 |
| |
|
Sinorhizobium meliloti (sme) |
4 |
| |
|
Shewanella oneidensis (son) |
1 |
| |
|
Serratia proteamaculans (spe) |
1 |
| |
|
Shewanella pealeana (spl) |
2 |
| |
|
Shewanella sediminis (sse) |
1 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
2 |
| |
|
Thiomicrospira crunogena (tcx) |
1 |
| |
|
Verminephrobacter eiseniae (vei) |
4 |
| |
|
Vibrio parahaemolyticus (vpa) |
1 |
| |
|
Vibrio vulnificus CMCP6 (vvu) |
1 |
| |
|
Wolinella succinogenes (wsu) |
2 |
| |
|
Xanthomonas axonopodis (xac) |
1 |
| |
|
Xanthomonas campestris pv. vesicatoria (xcv) |
1 |
| |
Spirochete |
|
13 |
| |
|
Borrelia burgdorferi (bbu) |
1 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
2 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
2 |
| |
|
Treponema denticola (tde) |
7 |
| |
|
Treponema pallidum (tpa) |
1 |
| Eukaryotes |
|
|
15 |
| |
Animals |
|
1 |
| |
|
Rattus norvegicus (rat) (rno) |
1 |
| |
Plants |
|
1 |
| |
|
Arabidopsis thaliana (thale cress) (ath) |
1 |
| |
Protists |
|
13 |
| |
|
Dictyostelium discoideum (ddi) |
4 |
| |
|
Plasmodium yoelii (pyo) |
2 |
| |
|
Tetrahymena thermophila (tet) |
4 |
| |
|
Trichomonas vaginalis (tva) |
3 |
| NULL |
|
|
192 |
| TOTAL |
|
|
2330 |
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}