BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGN_0056 probable conserved protein found in conjugate
transposon
(153 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29345494|ref|NP_808997.1| conserved protein found in con... 186 4e-46
gi|167752575|ref|ZP_02424702.1| hypothetical protein ALIPUT... 179 4e-44
gi|53712639|ref|YP_098631.1| conserved protein found in con... 179 6e-44
gi|60680752|ref|YP_210896.1| conserved hypothetical protein... 178 1e-43
gi|160887682|ref|ZP_02068685.1| hypothetical protein BACUNI... 173 3e-42
gi|34541140|ref|NP_905619.1| conjugative transposon protein... 171 2e-41
gi|150010442|ref|YP_001305185.1| conserved protein found in... 168 8e-41
gi|154491646|ref|ZP_02031272.1| hypothetical protein PARMER... 167 3e-40
gi|160890082|ref|ZP_02071085.1| hypothetical protein BACUNI... 166 3e-40
gi|150003244|ref|YP_001297988.1| conserved protein found in... 166 5e-40
gi|60681269|ref|YP_211413.1| conserved protein found in con... 165 7e-40
gi|150004137|ref|YP_001298881.1| conserved protein found in... 163 3e-39
gi|29348003|ref|NP_811506.1| conserved protein found in con... 162 5e-39
gi|160890740|ref|ZP_02071743.1| hypothetical protein BACUNI... 161 1e-38
gi|29347697|ref|NP_811200.1| conserved protein found in con... 160 3e-38
gi|53711404|ref|YP_097396.1| TraQ [Bacteroides fragilis YCH... 148 1e-34
gi|160889335|ref|ZP_02070338.1| hypothetical protein BACUNI... 145 1e-33
gi|46242776|gb|AAS83481.1| TraQ [Bacteroides fragilis] 142 8e-33
gi|10444281|gb|AAG17842.1|AF289050_17 TraQ [Bacteroides the... 142 1e-32
gi|167763560|ref|ZP_02435687.1| hypothetical protein BACSTE... 90 4e-17
gi|150004685|ref|YP_001299429.1| conserved protein found in... 89 8e-17
>gi|29345494|ref|NP_808997.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337386|gb|AAO75191.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 147
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 108/144 (75%), Gaps = 4/144 (2%)
Query: 3 KKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKR 62
+IL +VM L L G ACN ++DIQQ+YPF++ETMPV K + G+TAEIRC L R
Sbjct: 8 SRILIGCYVMAALLLVG----ACNDDVDIQQSYPFSIETMPVPKKLKVGETAEIRCQLHR 63
Query: 63 QGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVY 122
GRFE+ +Y IRYFQPDG G LKM+DGTV PND YPL E FRLYYTSAS+DQQT+DVY
Sbjct: 64 DGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPGETFRLYYTSASTDQQTVDVY 123
Query: 123 VEDNFGQTEKLSFEFNSQKDEEKE 146
+D+FGQ ++L+F FN+ +E+E
Sbjct: 124 FQDSFGQLQQLTFSFNNDSSKEEE 147
>gi|167752575|ref|ZP_02424702.1| hypothetical protein ALIPUT_00829 [Alistipes putredinis DSM 17216]
gi|167659644|gb|EDS03774.1| hypothetical protein ALIPUT_00829 [Alistipes putredinis DSM 17216]
Length = 152
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
Query: 11 VMGVLALAGVCL-SACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDA 69
+MG +A + L +ACN LDIQQAYPF++ET+PV K + G+TAEIRC L R G ++
Sbjct: 11 IMGCYIVAALVLVTACNDNLDIQQAYPFSIETLPVPKRLKVGETAEIRCRLVRGGYYQPT 70
Query: 70 RYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVEDNFGQ 129
Y IRYFQPDGKG+L+M++GTVF PND YPL KE FRLYYTSAS+DQQTID+Y+ D+FGQ
Sbjct: 71 TYQIRYFQPDGKGKLEMDNGTVFLPNDLYPLEKETFRLYYTSASTDQQTIDIYIIDSFGQ 130
Query: 130 TEKLSFEFNSQKDEEKEKT 148
++L+ FN+ EE +T
Sbjct: 131 MQQLTLSFNNDNSEEGTET 149
>gi|53712639|ref|YP_098631.1| conserved protein found in conjugate transposon TraQ [Bacteroides
fragilis YCH46]
gi|52215504|dbj|BAD48097.1| conserved protein found in conjugate transposon TraQ [Bacteroides
fragilis YCH46]
Length = 152
Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
Query: 11 VMGVLALAGVCL-SACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDA 69
+MG +A + L +ACN LDIQQAYPF++ET+PV K + G+TAEIRC L R G ++
Sbjct: 11 IMGCCIVAALVLVTACNDNLDIQQAYPFSIETLPVPKRLKVGETAEIRCQLVRGGYYQPT 70
Query: 70 RYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVEDNFGQ 129
Y IRYFQPDGKG+L+M++GTVF PND YPL KE FRLYYTSAS+DQQTID+Y+ D+FGQ
Sbjct: 71 TYQIRYFQPDGKGKLEMDNGTVFLPNDFYPLEKETFRLYYTSASTDQQTIDIYIIDSFGQ 130
Query: 130 TEKLSFEFNSQKDEEKEKT 148
++L+ FN+ EE +T
Sbjct: 131 MQQLTLSFNNDNSEEGTET 149
>gi|60680752|ref|YP_210896.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
gi|60492186|emb|CAH06951.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
Length = 149
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 104/136 (76%), Gaps = 2/136 (1%)
Query: 3 KKILNTIWVMGVLALAGVC-LSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLK 61
+KILN I +MG +A + + ACN ++DIQQ+YPF +ETMPV K + G+TAEIRC L
Sbjct: 4 RKILNRI-LMGCYVMAAILFVGACNDDVDIQQSYPFRIETMPVPKKLKVGETAEIRCQLH 62
Query: 62 RQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDV 121
R GRFE+ Y IRYFQPDG G LKM+DGTV PND YPL E FRLYYTSAS+DQQT+DV
Sbjct: 63 RDGRFEETMYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPGETFRLYYTSASTDQQTVDV 122
Query: 122 YVEDNFGQTEKLSFEF 137
Y +D+FGQ ++L+F F
Sbjct: 123 YFQDSFGQLQQLTFSF 138
>gi|160887682|ref|ZP_02068685.1| hypothetical protein BACUNI_00082 [Bacteroides uniformis ATCC 8492]
gi|156862813|gb|EDO56244.1| hypothetical protein BACUNI_00082 [Bacteroides uniformis ATCC 8492]
Length = 147
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 3 KKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKR 62
KK+ TI+V+G++ VC+ AC+ +LD+QQ Y F + T+PVQ IV G+ AEIRC L R
Sbjct: 2 KKMFETIFVLGLVLTGIVCVVACSDKLDVQQVYEFDMATLPVQNKIVIGEEAEIRCELVR 61
Query: 63 QGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVY 122
G + + +Y IRYFQPDGKG+L++ DGTV PND YPL +E FRLYY S S+DQQTID+Y
Sbjct: 62 GGTYVETKYFIRYFQPDGKGQLRLEDGTVLLPNDLYPLERETFRLYYKSMSTDQQTIDIY 121
Query: 123 VEDNFGQTEKLSFEFN--SQKDEEKE 146
V D+FGQ + SF FN SQ EE+E
Sbjct: 122 VVDSFGQMIQKSFSFNNESQDKEEEE 147
>gi|34541140|ref|NP_905619.1| conjugative transposon protein TraQ [Porphyromonas gingivalis W83]
gi|34397456|gb|AAQ66518.1| conjugative transposon protein TraQ [Porphyromonas gingivalis W83]
Length = 154
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
MK+K ++ +WVMGVL +AG CLSACN ELD+Q +PF V TMPV K I +G+T E+RC+L
Sbjct: 1 MKRKWIDALWVMGVLLMAGFCLSACNRELDVQTVFPFEVSTMPVPKQIKQGETVEVRCSL 60
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTID 120
+G F YT+R+FQ +GKG L++ G KPND YP+ K FRLYYTS S ++Q+++
Sbjct: 61 VSEGDFSGTCYTMRFFQTEGKGVLRIGRGVALKPNDCYPVGKGDFRLYYTSQSKERQSLE 120
Query: 121 VYVEDNFGQTEKLSFEFNS-QKDEEKEKTNG 150
+ EDN GQ++ + +FN + DE+KE+ G
Sbjct: 121 IVFEDNHGQSQTIVLDFNHKESDEDKEREAG 151
>gi|150010442|ref|YP_001305185.1| conserved protein found in conjugate transposon [Parabacteroides
distasonis ATCC 8503]
gi|149938866|gb|ABR45563.1| conserved protein found in conjugate transposon [Parabacteroides
distasonis ATCC 8503]
Length = 158
Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
MK+KI++ + + LA++ + L++C+ ELD+QQ YPFTVE+MPV I G+T EIR +
Sbjct: 1 MKRKIVDFMTFICCLAVSCLSLASCDSELDVQQEYPFTVESMPVVGKIADGETVEIRLEI 60
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSD-QQTI 119
K +G F YT+RYFQPDGKG LKM DGTV KPNDRY L + FRLYYTS S+D QTI
Sbjct: 61 KAEGNFSGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNELRFRLYYTSQSADASQTI 120
Query: 120 DVYVEDNFGQTEKLSFEFNSQKD--EEKEKTNG 150
D+Y EDN+G ++LS++FN+ EK+ T+G
Sbjct: 121 DLYFEDNWGNLQRLSYDFNADDTPLAEKDDTHG 153
>gi|154491646|ref|ZP_02031272.1| hypothetical protein PARMER_01257 [Parabacteroides merdae ATCC
43184]
gi|167764564|ref|ZP_02436685.1| hypothetical protein BACSTE_02954 [Bacteroides stercoris ATCC
43183]
gi|154088447|gb|EDN87492.1| hypothetical protein PARMER_01257 [Parabacteroides merdae ATCC
43184]
gi|167697233|gb|EDS13812.1| hypothetical protein BACSTE_02954 [Bacteroides stercoris ATCC
43183]
Length = 153
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 107/150 (71%), Gaps = 2/150 (1%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
MK++IL+ + + + + + L AC++ELDI+Q YPFTVE+MPV IV G+T EIR +
Sbjct: 1 MKRRILDFMMTVCCMVFSFLALVACDNELDIRQEYPFTVESMPVADEIVNGETVEIRLEI 60
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASS-DQQTI 119
K +G F YT+RYFQPDGKG LKM DGTV KPNDRY L + FRLYYTS S + QTI
Sbjct: 61 KPEGNFSGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSHSGKESQTI 120
Query: 120 DVYVEDNFGQTEKLSFEFNSQKDEEKEKTN 149
D+Y EDN+G ++L+++FN KD E+E N
Sbjct: 121 DLYFEDNWGNLQQLTYDFNG-KDAEEEDNN 149
>gi|160890082|ref|ZP_02071085.1| hypothetical protein BACUNI_02522 [Bacteroides uniformis ATCC 8492]
gi|156860470|gb|EDO53901.1| hypothetical protein BACUNI_02522 [Bacteroides uniformis ATCC 8492]
Length = 153
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
MK++IL+ + + + + L AC++ELDI+Q YPFTVE+MPV IV G+T EIR +
Sbjct: 1 MKRRILDFMMTACCMVFSFLALVACDNELDIRQEYPFTVESMPVADEIVNGETVEIRLEI 60
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASS-DQQTI 119
K +G F YT+RYFQPDGKG LKM DGTV KPNDRY L + FRLYYTS S + QTI
Sbjct: 61 KPEGNFSGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQSGKESQTI 120
Query: 120 DVYVEDNFGQTEKLSFEFNSQKDEEKEKTN 149
D+Y EDN+G ++L+++FN KD E+E N
Sbjct: 121 DLYFEDNWGNLQQLTYDFNG-KDAEEEDNN 149
>gi|150003244|ref|YP_001297988.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149931668|gb|ABR38366.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 152
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
MK+KIL+ + +A + + L AC++ELDI+Q YPFTVETMPV I G+T EIR +
Sbjct: 1 MKRKILDFMLTACCMAFSFLGLVACDNELDIRQEYPFTVETMPVADEITDGETVEIRLEI 60
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASS-DQQTI 119
K +G F YT+RYFQPDGKG LKM DGTV KPNDRY L + FRLYYTS S + QTI
Sbjct: 61 KPEGNFAGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQSGKESQTI 120
Query: 120 DVYVEDNFGQTEKLSFEFNSQK-DEEKEK 147
D+Y+EDN+G ++L+++FN + DEE K
Sbjct: 121 DLYLEDNWGNLQQLTYDFNGKDTDEENNK 149
>gi|60681269|ref|YP_211413.1| conserved protein found in conjugate transposon [Bacteroides
fragilis NCTC 9343]
gi|60492703|emb|CAH07476.1| conserved protein found in conjugate transposon [Bacteroides
fragilis NCTC 9343]
Length = 149
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
M KIL +++ L L ++ACN LDIQ YPFTVETMPV K + +TAEIRC L
Sbjct: 4 MIYKILTGCYIVAALVL----VAACNDGLDIQTKYPFTVETMPVPKELKVNETAEIRCEL 59
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTID 120
KR+GR+ED RYTIR+F DG+G LK++DGTV PNDRYPL KE FRLYYT S +Q
Sbjct: 60 KREGRWEDTRYTIRWFLFDGEGTLKLDDGTVLLPNDRYPLEKETFRLYYTPLSDEQSGFT 119
Query: 121 VYVEDNFGQTEKLSFEFNSQKDEE 144
V+VED+ GQ +L F+FN+ D+E
Sbjct: 120 VWVEDSDGQAVELEFDFNADNDKE 143
>gi|150004137|ref|YP_001298881.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149932561|gb|ABR39259.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 153
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 104/145 (71%), Gaps = 1/145 (0%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
MK++IL+ + +A++ + L+AC++ELDIQQ YPFTVE+MPV I +T EIR +
Sbjct: 1 MKRRILDMMMAACCMAVSFLGLAACDNELDIQQEYPFTVESMPVADEIAGDETVEIRLEI 60
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASS-DQQTI 119
K G F YT+RYFQPDGKG LKM DGTV KPNDRY L + FRLYYTS S + QTI
Sbjct: 61 KPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQSDKEAQTI 120
Query: 120 DVYVEDNFGQTEKLSFEFNSQKDEE 144
D+Y EDN+G ++L+++FN ++ EE
Sbjct: 121 DLYFEDNWGNLQQLTYDFNGKEAEE 145
>gi|29348003|ref|NP_811506.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|160882505|ref|ZP_02063508.1| hypothetical protein BACOVA_00456 [Bacteroides ovatus ATCC 8483]
gi|29339905|gb|AAO77700.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|156112086|gb|EDO13831.1| hypothetical protein BACOVA_00456 [Bacteroides ovatus ATCC 8483]
Length = 161
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 2/149 (1%)
Query: 3 KKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKR 62
KKIL+ I ++ +A A C + C+ +LDIQQ YPFTVE MPV I GQT EIR +
Sbjct: 9 KKILDQIMILCCMAAALFCFTFCSDDLDIQQEYPFTVEAMPVADKIAGGQTVEIRLEITE 68
Query: 63 QGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQ-QTIDV 121
+G F YT+RYFQPDG G LK+ DGTV KPNDRY L+++ FRLYYTS S+++ QTID+
Sbjct: 69 EGNFSGTLYTLRYFQPDGNGLLKLEDGTVLKPNDRYLLSEKKFRLYYTSRSTNEAQTIDL 128
Query: 122 YVEDNFGQTEKLSFEFNSQKDEEKEKTNG 150
Y E+N+ +LSF FN++ D EKT G
Sbjct: 129 YFENNWQDVRQLSFSFNNRND-GAEKTEG 156
>gi|160890740|ref|ZP_02071743.1| hypothetical protein BACUNI_03185 [Bacteroides uniformis ATCC 8492]
gi|156859739|gb|EDO53170.1| hypothetical protein BACUNI_03185 [Bacteroides uniformis ATCC 8492]
Length = 149
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 1 MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTL 60
M KI +++ L L ++ACN +LDIQ YPFTVETMPV K + +TAEIRC L
Sbjct: 4 MIYKIFTGCYIVAALVL----VAACNDKLDIQTKYPFTVETMPVPKELKVNETAEIRCEL 59
Query: 61 KRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTID 120
KR+GR+ED RYTIR+F DG+G LK++DGT PNDRYPL KE FRLY+T S +Q +
Sbjct: 60 KREGRWEDTRYTIRWFLFDGEGTLKLDDGTALLPNDRYPLEKETFRLYFTPLSDEQSSFT 119
Query: 121 VYVEDNFGQTEKLSFEFNSQKDEE 144
V+VED+ GQ +L ++FN+ D+E
Sbjct: 120 VWVEDSDGQAVELEYDFNADNDKE 143
>gi|29347697|ref|NP_811200.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339598|gb|AAO77394.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 145
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 103/144 (71%)
Query: 5 ILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQG 64
++ ++ + G + +A + ++AC+ +LD+QQ Y F + T+PVQ IVKG+ AEIRC L R G
Sbjct: 1 MIESMIIAGGMLVALLYMTACSDKLDVQQMYEFDLATLPVQTTIVKGEEAEIRCQLVRSG 60
Query: 65 RFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVE 124
++D +Y IRYFQP GKG L+M +GTV PND Y L +E FRLYY S +DQQ ID+Y+
Sbjct: 61 EYQDTKYFIRYFQPTGKGELRMENGTVLLPNDLYLLPEETFRLYYRSFGTDQQKIDIYIL 120
Query: 125 DNFGQTEKLSFEFNSQKDEEKEKT 148
D+FGQ + SF FN++ ++EKE T
Sbjct: 121 DSFGQVVQKSFAFNNEAEDEKEDT 144
>gi|53711404|ref|YP_097396.1| TraQ [Bacteroides fragilis YCH46]
gi|154490898|ref|ZP_02030839.1| hypothetical protein PARMER_00815 [Parabacteroides merdae ATCC
43184]
gi|167762718|ref|ZP_02434845.1| hypothetical protein BACSTE_01076 [Bacteroides stercoris ATCC
43183]
gi|52214269|dbj|BAD46862.1| TraQ [Bacteroides fragilis YCH46]
gi|154088646|gb|EDN87690.1| hypothetical protein PARMER_00815 [Parabacteroides merdae ATCC
43184]
gi|167699058|gb|EDS15637.1| hypothetical protein BACSTE_01076 [Bacteroides stercoris ATCC
43183]
Length = 167
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 93/137 (67%)
Query: 12 MGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDARY 71
+ ++A L +C+ ++DIQQ+YPFTVE MPV +VKGQT EIRC LK++G F Y
Sbjct: 19 LCLIAAMSFTLVSCDDDMDIQQSYPFTVEVMPVPNKVVKGQTVEIRCELKKEGDFSGTLY 78
Query: 72 TIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVEDNFGQTE 131
TIRYFQ +G+G LKM++G F PNDRY L E FRLYYT+A + V VEDNF +
Sbjct: 79 TIRYFQFEGEGSLKMDNGITFLPNDRYLLENEKFRLYYTAAGDEAHNFIVVVEDNFSNSY 138
Query: 132 KLSFEFNSQKDEEKEKT 148
+L F+FN++ ++ + T
Sbjct: 139 ELEFDFNNRNVKDDDLT 155
>gi|160889335|ref|ZP_02070338.1| hypothetical protein BACUNI_01758 [Bacteroides uniformis ATCC 8492]
gi|156861342|gb|EDO54773.1| hypothetical protein BACUNI_01758 [Bacteroides uniformis ATCC 8492]
Length = 168
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 87/131 (66%)
Query: 10 WVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDA 69
+ + A +C+ ++DIQQ+YPFTVETMPV + KGQT EIRC LK+ G F +
Sbjct: 17 LALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANT 76
Query: 70 RYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVEDNFGQ 129
YTIRYFQ +G+G LKM++G F PNDRY L E FRLYYT+ + V VEDNFG
Sbjct: 77 LYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGN 136
Query: 130 TEKLSFEFNSQ 140
+ +L F+FN++
Sbjct: 137 SYELEFDFNNR 147
>gi|46242776|gb|AAS83481.1| TraQ [Bacteroides fragilis]
Length = 168
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Query: 2 KKKILNTIWVMGVLALAGVCLSA--CNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCT 59
K K + + + A V L+A C+ ++DIQQ+YPFTVETMPV + KGQT EIRC
Sbjct: 7 KNKRTSIFKALALCLFAAVSLTAVSCDDDMDIQQSYPFTVETMPVPNKVSKGQTVEIRCE 66
Query: 60 LKRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTI 119
LK+ G F + YTIRYFQ +G G LKM G F PNDRY L E F+LYYT+ +
Sbjct: 67 LKKTGDFANTLYTIRYFQFEGDGTLKMAGGITFLPNDRYLLENEKFQLYYTAQGDEAHNF 126
Query: 120 DVYVEDNFGQTEKLSFEFNSQ 140
V VEDNFG + +L F+FN++
Sbjct: 127 IVVVEDNFGNSYELEFDFNNR 147
>gi|10444281|gb|AAG17842.1|AF289050_17 TraQ [Bacteroides thetaiotaomicron]
Length = 165
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 88/129 (68%)
Query: 12 MGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDARY 71
+ ++A L +C+ ++DIQQ+YPFTVE MPV + KGQT EIRC LK++G F + Y
Sbjct: 19 LCLIAAVSFTLVSCDDDMDIQQSYPFTVEVMPVPNKVTKGQTVEIRCELKKEGDFANTLY 78
Query: 72 TIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVEDNFGQTE 131
TIRYFQ +G+G+LKM++G F PNDRY L FRLYYT+ + V VEDNF +
Sbjct: 79 TIRYFQFEGEGKLKMDNGITFLPNDRYLLENGKFRLYYTAEGDEAHNFIVVVEDNFKNSY 138
Query: 132 KLSFEFNSQ 140
+L F+FN++
Sbjct: 139 ELEFDFNNR 147
>gi|167763560|ref|ZP_02435687.1| hypothetical protein BACSTE_01935 [Bacteroides stercoris ATCC
43183]
gi|167698854|gb|EDS15433.1| hypothetical protein BACSTE_01935 [Bacteroides stercoris ATCC
43183]
Length = 153
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 11/151 (7%)
Query: 7 NTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRF 66
N +++ LA + S+CN +DI+Q Y F++ + +QK I G+T EIR L R+G +
Sbjct: 3 NVLYICIGALLAVLAFSSCNDGIDIRQDYDFSLSSWYLQKQIATGETVEIRFYLDREGDY 62
Query: 67 EDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPL-----------TKEVFRLYYTSASSD 115
E A Y I Y Q +GKG + +G + PL K+VF L+Y S S+
Sbjct: 63 EKAEYEIGYIQMEGKGEVSDCEGVKLVNREVKPLAEVPGLDTENPVKQVFTLFYRSTSAR 122
Query: 116 QQTIDVYVEDNFGQTEKLSFEFNSQKDEEKE 146
+ + +V DNFGQ +++ F+++ +E
Sbjct: 123 RSELKFFVRDNFGQEREMTVTFDTESGTTEE 153
>gi|150004685|ref|YP_001299429.1| conserved protein found in conjugate transposon TraQ [Bacteroides
vulgatus ATCC 8482]
gi|149933109|gb|ABR39807.1| conserved protein found in conjugate transposon TraQ [Bacteroides
vulgatus ATCC 8482]
Length = 153
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 12/146 (8%)
Query: 12 MGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDARY 71
+G L LA + ++CN +DI+Q Y F++ + +QK I G+T EIR L R+G +E A Y
Sbjct: 9 IGAL-LAALAFNSCNDGIDIRQDYDFSLSSWYLQKQIATGETVEIRFYLDREGDYEKAEY 67
Query: 72 TIRYFQPDGKGRLKMNDGTVFKPNDRYPLT-----------KEVFRLYYTSASSDQQTID 120
I Y Q +GKG + ++G + PL K+VF L+Y S S+ + +
Sbjct: 68 EIGYIQMEGKGEVSDSEGIKLVNREVRPLAEVPGLDTENPVKQVFTLFYRSTSAKRSELK 127
Query: 121 VYVEDNFGQTEKLSFEFNSQKDEEKE 146
+V DNFG+ +++ F+ + KE
Sbjct: 128 FFVRDNFGREREMTVTFDLESTTAKE 153
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 884,634,002
Number of sequences in database: 2,620,852
Database: /apps/blastdb/nr.01
Posted date: May 10, 2008 4:52 AM
Number of letters in database: 976,814,986
Number of sequences in database: 2,761,530
Database: /apps/blastdb/nr.02
Posted date: May 10, 2008 4:46 AM
Number of letters in database: 360,829,861
Number of sequences in database: 1,132,722
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 679,982,460
Number of Sequences: 6515104
Number of extensions: 26814420
Number of successful extensions: 62192
Number of sequences better than 1.0e-04: 21
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62163
Number of HSP's gapped (non-prelim): 22
length of query: 153
length of database: 2,222,278,849
effective HSP length: 116
effective length of query: 37
effective length of database: 1,466,526,785
effective search space: 54261491045
effective search space used: 54261491045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)