R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7488713|pir||T08896 Sali3-2 protein, aluminium-induced - soybean
>gi|2317900|gb|AAB66369.1| (U89693) Sali3-2 [Glycine max]
Length = 276
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.45, P = 0.36
Identities = 14/15 (93%), Positives = 15/15 (100%), Frame = +2
Query: 5 PNLSMDTAYQTNVVV 49
PN+SMDTAYQTNVVV
Sbjct: 262 PNISMDTAYQTNVVV 276
>gi|7505979|pir||T25841 hypothetical protein M03F4.6 - Caenorhabditis elegans
>gi|1439652|gb|AAB04577.1| (U64601) M03F4.6 gene product
[Caenorhabditis elegans]
Length = 179
Frame 1 hits (HSPs): ________ ___
__________________________________________________
Database sequence: | | | | | 179
0 50 100 150
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 0.46, Sum P(2) = 0.37
Identities = 10/26 (38%), Positives = 13/26 (50%), Frame = +1
Query: 10 FIYGHCLSD*RCCLISPCICILGTIR 87
FIY C+ C+ C+C GT R
Sbjct: 7 FIY-RCVDPFNACIAGTCLCAPGTTR 31
Score = 33 (11.6 bits), Expect = 0.46, Sum P(2) = 0.37
Identities = 5/10 (50%), Positives = 6/10 (60%), Frame = +1
Query: 118 VCCARPGTSP 147
+CC RP P
Sbjct: 134 LCCPRPCRDP 143
>gi|7020918|dbj|BAA91319.1| (AK000675) unnamed protein product [Homo sapiens]
Length = 272
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 1.2, Sum P(2) = 0.70
Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = +1
Query: 22 HCLSD*RCCLISPCICILGTIR 87
HC D LI+PC C GT+R
Sbjct: 67 HCEGDEESPLITPCRCT-GTLR 87
Score = 36 (12.7 bits), Expect = 1.2, Sum P(2) = 0.70
Identities = 6/23 (26%), Positives = 11/23 (47%), Frame = +3
Query: 84 KIVYKINYGVLCMLCKTWNFTFL 152
KI + + V+ + C W+ L
Sbjct: 137 KIFCSVTFHVIAITCVVWSLYVL 159
>gi|2789644|gb|AAC27444.1| (AF034626) ribosomal protein S12 [Phytomonas
serpens]
Length = 89
Frame 3 hits (HSPs): ____________
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 89
0 20 40 60 80
Plus Strand HSPs:
Score = 39 (13.7 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 7/22 (31%), Positives = 14/22 (63%), Frame = +3
Query: 87 IVYKINYGVLCMLCKTWNFTFL 152
++Y +G C++C + +F FL
Sbjct: 48 VIYCFLFGC-CVICYSQSFYFL 68
Score = 33 (11.6 bits), Expect = 1.5, Sum P(2) = 0.77
Identities = 9/31 (29%), Positives = 15/31 (48%), Frame = +1
Query: 13 IYGHCLSD*---RCCLISPCICILGTIRLYI 96
+YG C+ C +SP + G R+Y+
Sbjct: 9 LYGFCVRFCFVFLCIYVSPRLPSSGNRRVYV 39
>gi|7292590|gb|AAF47990.1| (AE003484) CG1537 gene product [Drosophila
melanogaster]
Length = 135
Frame 3 hits (HSPs): ______ _____
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 8/14 (57%), Positives = 9/14 (64%), Frame = +3
Query: 105 YGVLCMLCKTWNFT 146
YG+LC TW FT
Sbjct: 85 YGILCNFKCTWFFT 98
Score = 32 (11.3 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 7/15 (46%), Positives = 8/15 (53%), Frame = +3
Query: 63 HLHLGHHKIVYKINY 107
H H G H I IN+
Sbjct: 46 HHHGGSHHIRRNINH 60
>gi|2769725|gb|AAC40337.1| (U92288) H88 [Human herpesvirus 6]
Length = 40
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | 40
0 20
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.0, P = 0.87
Identities = 13/30 (43%), Positives = 18/30 (60%), Frame = +1
Query: 43 CCLISPCICILGTIRLYIK*IMVCCVC-CAR 132
CC+ C+C+L L + + VCCVC C R
Sbjct: 9 CCVCVCCVCVLC---LCV--VFVCCVCVCER 34
>gi|7519366|pir||E71213 hypothetical protein PH1973 - Pyrococcus horikoshii
>gi|3258417|dbj|BAA31100.1| (AP000007) 107aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 107
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.0, P = 0.87
Identities = 17/42 (40%), Positives = 23/42 (54%), Frame = +3
Query: 15 LWTLPIRLTLLFN*SMHLHLGHHKIVYKINYGVLCMLCKTWN 140
LW L LTLLFN + +G + +I+ G+ C L K WN
Sbjct: 71 LWPLSANLTLLFNFRSSILVG---FILRIS-GISCHLVK-WN 107
>gi|485515|pir||S33622 ADR6 protein - soybean >gi|296445|emb|CAA49340.1|
(X69639) auxin down regulated [Glycine max]
>gi|2304955|gb|AAB65592.1| (U64866) similar to ADR6 encoded by
GenBank Accession Number X69639; aluminum induced [Glycine max]
Length = 272
Frame 2 hits (HSPs): ___
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM02982: 18..258
__________________
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 2.6, P = 0.92
Identities = 12/14 (85%), Positives = 14/14 (100%), Frame = +2
Query: 5 PNLSMDTAYQTNVV 46
PNLS+DTAYQTN+V
Sbjct: 258 PNLSVDTAYQTNIV 271
>gi|288324|emb|CAA39349.1| (X55823) T-cell receptor alpha-chain [Mus musculus]
Length = 95
Frame -2 hits (HSPs): ______
Frame -3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 10/31 (32%), Positives = 16/31 (51%), Frame = -3
Query: 150 ER*SSRSC-TTYTTHHNLFYIQSYGAQDADA 61
E+ SSR TY F++Q Q++D+
Sbjct: 30 EKGSSRGFEATYNKEATSFHLQKASVQESDS 60
Score = 29 (10.2 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 5/10 (50%), Positives = 5/10 (50%), Frame = -2
Query: 70 CRCMD*LNNN 41
C C NNN
Sbjct: 63 CYCASFFNNN 72
>gi|6580252|emb|CAB63324.1| (Z83129) predicted using Genefinder [Caenorhabditis
elegans]
Length = 101
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
Identities = 11/29 (37%), Positives = 16/29 (55%), Frame = +1
Query: 43 CCLISPCICILGTIRLYIK*IMVCCVCCA 129
CC C C+ G +R + + +CC CCA
Sbjct: 71 CC----CSCMHGVLRFFAE---LCCNCCA 92
>gi|4958931|dbj|BAA78101.1| (AB027465) Rep protein 3 [squash leaf curl virus]
Length = 136
Frame 3 hits (HSPs): ____ ___________
__________________________________________________
Database sequence: | | | | 136
0 50 100
Plus Strand HSPs:
Score = 38 (13.4 bits), Expect = 4.6, Sum P(2) = 0.99
Identities = 10/30 (33%), Positives = 19/30 (63%), Frame = +3
Query: 30 IRLTLLFN*SMHLHLGHHK--IVYKINYGV 113
I++ ++FN ++ LG HK I ++I G+
Sbjct: 48 IKVQVMFNHNLRKALGLHKCAITFQIWTGL 77
Score = 36 (12.7 bits), Expect = 4.6, Sum P(2) = 0.99
Identities = 4/7 (57%), Positives = 7/7 (100%), Frame = +3
Query: 9 IYLWTLP 29
+Y+WT+P
Sbjct: 20 VYIWTVP 26
>gi|4033371|sp|O51875|ATPD_BUCAP ATP SYNTHASE DELTA CHAIN
>gi|2827021|gb|AAC38113.1| (AF008210) ATP synthase subunit delta
[Buchnera aphidicola]
Length = 177
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
__________________
Annotated Domains:
PFAM OSCP: ATP synthase delta (OSCP) subunit 7..175
PRODOM PD001250: ATPD(41) ATPO(6) 1..174
__________________
Plus Strand HSPs:
Score = 42 (14.8 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 7/18 (38%), Positives = 13/18 (72%), Frame = +2
Query: 11 LSMDTAYQTNVVV*LVHA 64
L ++T+YQ N ++ L+ A
Sbjct: 97 LKLETSYQGNTIIELISA 114
Score = 33 (11.6 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 6/17 (35%), Positives = 11/17 (64%), Frame = +3
Query: 66 LHLGHHKIVYKINYGVL 116
+ L K +YKI++ +L
Sbjct: 132 IFLSKIKFIYKIDHQIL 148
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.90
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.155 0.588
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.150 0.564
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.358 0.163 0.681
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.158 0.578
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.362 0.164 0.644
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.361 0.154 0.555
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 51 50 10. 57 3 12 22 0.10 29
26 0.071 29
+2 0 51 50 10. 57 3 12 22 0.10 29
26 0.071 29
+1 0 51 50 10. 57 3 12 22 0.10 29
26 0.071 29
-1 0 51 51 10. 57 3 12 22 0.10 29
26 0.077 29
-2 0 51 50 10. 57 3 12 22 0.10 29
26 0.071 29
-3 0 51 50 10. 57 3 12 22 0.10 29
26 0.071 29
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 12
No. of states in DFA: 574 (57 KB)
Total size of DFA: 113 KB (128 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 73.07u 1.04s 74.11t Elapsed: 00:00:25
Total cpu time: 73.11u 1.08s 74.19t Elapsed: 00:00:25
Start: Wed Feb 14 23:39:36 2001 End: Wed Feb 14 23:40:01 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000